|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
373-1026 |
1.79e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 373 LERVDQVVREKEK----LRSDLDKAEKLKSLMASEVD-DHHAAIERRNEYNLRKldEEYKERIAALKNELRQEREQI--- 444
Cdd:COG1196 188 LERLEDILGELERqlepLERQAEKAERYRELKEELKElEAELLLLKLRELEAEL--EELEAELEELEAELEELEAELael 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 445 ---LQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENV---LAEKFGD 518
Cdd:COG1196 266 eaeLEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeeLEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 519 LDPSSAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLpcQNALSEELDGHGDGIEQDQEpgsgec 598
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE--LAAQLEELEEAEEALLERLE------ 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 599 nplnmSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIAD 678
Cdd:COG1196 418 -----RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 679 LQGQAAVLKEAHHK-ASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKAR 757
Cdd:COG1196 493 LLLLLEAEADYEGFlEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 758 SLTRdleqshqeQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETEcnRRVSQIEAQFQADCEKVTERCEQTLQSL 837
Cdd:COG1196 573 RATF--------LPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR--YYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 838 EGRYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHKERLAILSMEREQLL 917
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 918 QDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEhvlcqtGVSEQLGSQQLARLqvehEQERREMaGKI--AALESAh 995
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPE------PPDLEELERELERL----EREIEAL-GPVnlLAIEEY- 790
|
650 660 670
....*....|....*....|....*....|.
gi 672056291 996 rvscERADQEKAEMSAEIRRLQSTVKDLQQA 1026
Cdd:COG1196 791 ----EELEERYDFLSEQREDLEEARETLEEA 817
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
425-1100 |
2.53e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 2.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 425 EYKERIAALKNELRQEREQ------ILQQVGKQRVELEQEIEKAKTeenyirdrlALSLKEnnrlENELLENAEKLAEYE 498
Cdd:COG1196 169 KYKERKEEAERKLEATEENlerledILGELERQLEPLERQAEKAER---------YRELKE----ELKELEAELLLLKLR 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 499 NLTSKLQRSLENVLAEKfgdldpssaeffLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQgrvlrlpcQNALSE 578
Cdd:COG1196 236 ELEAELEELEAELEELE------------AELEELEAELAELEAELEELRLELEELELELEEAQAE--------EYELLA 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 579 ELDGHGDGIEQDQEpgsgecnplnMSIEAELVIEQLKEQhhrdlchlRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKy 658
Cdd:COG1196 296 ELARLEQDIARLEE----------RRRELEERLEELEEE--------LAELEEELEELEEELEELEEELEEAEEELEEA- 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 659 EQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESF 738
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 739 RQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQRELQegrEEMETECNRRVSQIEAQ 818
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL---LEAEADYEGFLEGVKAA 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 819 FQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERsqwefekdeLTQECTEAQEQLEEVLQR--EKATALARSQEQE 896
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI---------VVEDDEVAAAAIEYLKAAkaGRATFLPLDKIRA 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 897 TLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVlcQTGVSEQLGSQQLARLQVE 976
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA--GRLREVTLEGEGGSAGGSL 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 977 HEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLLVlqggcRATAGEEAEGNGALSLLQQG 1056
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL-----EEELEEEALEEQLEAEREEL 737
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 672056291 1057 EQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKLEP 1100
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
656-1233 |
6.00e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 6.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 656 QKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQmvfdeektQLQEELRLEHEQelKARLQQAE 735
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE--------EAQAEEYELLAE--LARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 736 ESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQI 815
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 816 EAQfQADCEKVTERCEQTLQSLEGRyRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQ 895
Cdd:COG1196 385 AEE-LLEALRAAAELAAQLEELEEA-EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 896 ETLEKTHKERLailsmEREQLLQDLKDLQNTSERQHSLLSdQMLELKRSQERELREPEHVLCQTGVSEQLGsqqlARLQV 975
Cdd:COG1196 463 ELLAELLEEAA-----LLEAALAELLEELAEAAARLLLLL-EAEADYEGFLEGVKAALLLAGLRGLAGAVA----VLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 976 EHEQERremAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEG-NGALSLLQ 1054
Cdd:COG1196 533 EAAYEA---ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1055 QGEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKLEPGSAISSCLEERMTEISGSSREHAEpvmkrgtatk 1134
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA---------- 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1135 hFLSDPGDHEAQGLGSTGTSSVQRQECRTEESEASLECFSELENSEDTRTESWDLKSQIIQLQEQLTVLRADcdrASERK 1214
Cdd:COG1196 680 -ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE---EALEE 755
|
570
....*....|....*....
gi 672056291 1215 RDLLFDISVLKKKLKMLER 1233
Cdd:COG1196 756 LPEPPDLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-926 |
7.16e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 7.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 344 LALENELLVTKNGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRN--EYNLRK 421
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQaeEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 422 LDEEYKERIAALKnELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLT 501
Cdd:COG1196 296 ELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 502 SKLQRSLENVLAEKFGDLDpssaefflQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELD 581
Cdd:COG1196 375 AEAEEELEELAEELLEALR--------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 582 GHGDGIEQDQEpgsgecnpLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQG 661
Cdd:COG1196 447 AAEEEAELEEE--------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 662 MRTLEKQISELQS-EIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQ 740
Cdd:COG1196 519 LRGLAGAVAVLIGvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 741 E-REGLAQAAAWTEEKAR-----SLTRDLEQSHQEQLLSLMEKHALEKEELRKEL-------SEYHQRELQEGREEMETE 807
Cdd:COG1196 599 AaVDLVASDLREADARYYvlgdtLLGRTLVAARLEAALRRAVTLAGRLREVTLEGeggsaggSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 808 CNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKAT 887
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 672056291 888 ALARSQEQETLEKTH--------------------KERLAILSMEREQLLQDLKDLQNT 926
Cdd:COG1196 759 PPDLEELERELERLEreiealgpvnllaieeyeelEERYDFLSEQREDLEEARETLEEA 817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-951 |
1.40e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 358 HQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIER-RNEYN-LRKLDEEYKERIAALKN 435
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEElKEELEsLEAELEELEAELEELES 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 436 ELRQEREQILQQVGKqRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRS-LENVLAE 514
Cdd:TIGR02168 373 RLEELEEQLETLRSK-VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEeLEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 515 KFGDLDPSSAEFFLQEERLAQMRNE---YEQQCRLLQDQVDELQSELEEYQAQGR------------------------- 566
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQAldaAERELAQLQARLDSLERLQENLEGFSEgvkallknqsglsgilgvlselisv 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 567 ----------VLRLPCQNALSEELDGHGDGIEQDQEPGSGECNPLNMSIEAELVIEQLKE---QHHRDLCHLRLELEDKV 633
Cdd:TIGR02168 532 degyeaaieaALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDReilKNIEGFLGVAKDLVKFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 634 RHYEKQ----LDHTRVACEKEQ-VAMKQKYEQGMR----------------------------------TLEKQISELQS 674
Cdd:TIGR02168 612 PKLRKAlsylLGGVLVVDDLDNaLELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrreieELEEKIEELEE 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 675 EIADLQGQAAVLKEAH--------------HKASCRHEEEKKQLQMvfdEEKTQLQEELRLEHEQELKARLQQAEESFRQ 740
Cdd:TIGR02168 692 KIAELEKALAELRKELeeleeeleqlrkelEELSRQISALRKDLAR---LEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 741 EREGLAQAAAWTEEKARSLTRDLEQsHQEQLLSLMEKHalekEELRKELSEyHQRELQEGREEMEtECNRRVSQIEAQFQ 820
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQ-LKEELKALREAL----DELRAELTL-LNEEAANLRERLE-SLERRIAATERRLE 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 821 aDCEKVTERCEQTLQSLEGRYRQ------ELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKAtALARSQE 894
Cdd:TIGR02168 842 -DLEEQIEELSEDIESLAAEIEEleelieELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE-LRRELEE 919
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 672056291 895 QETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELRE 951
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
354-1100 |
4.00e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 4.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 354 KNGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAI-ERRNEYN-LRKLDEEYKERIA 431
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVsELEEEIEeLQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 432 ALKNELRQEREQiLQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYEnltsKLQRSLENV 511
Cdd:TIGR02168 299 RLEQQKQILRER-LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE----AELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 512 LAEKFGDLDPSSAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELDGHGDGIEQDQ 591
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 592 EPGSGECNPLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTR---------------VACEKEQVAMKQ 656
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEgvkallknqsglsgiLGVLSELISVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 657 KYEQG-------------MRTLEKQISELQSEIADLQGQAAVL---------KEAHHKASCRHEEEKKQLQMVFDEEKTQ 714
Cdd:TIGR02168 534 GYEAAieaalggrlqavvVENLNAAKKAIAFLKQNELGRVTFLpldsikgteIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 715 LQEEL-----------RLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQ-EQLLSLMEKHALEK 782
Cdd:TIGR02168 614 LRKALsyllggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREiEELEEKIEELEEKI 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 783 EELRKELSEYhqRELQEGREEMETECNRRVSQIEAQFqADCEKVTERCEQTLQSLEGRYRQELKDLLDQhleersqwEFE 862
Cdd:TIGR02168 694 AELEKALAEL--RKELEELEEELEQLRKELEELSRQI-SALRKDLARLEAEVEQLEERIAQLSKELTEL--------EAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 863 KDELTQECTEAQEQLEEVLQrEKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELK 942
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 943 RSQERELREPEHVLCQTGVSEQLGsQQLARLQVEHEQERREMAGKIAALESAHRvsceradqEKAEMSAEIRRLQSTVKD 1022
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELE-ELIEELESELEALLNERASLEEALALLRS--------ELEELSEELRELESKRSE 912
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672056291 1023 LQQATSLLVLQGGCRATAGEEAEGNgalsLLQQGEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKLEP 1100
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVR----IDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP 986
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1424-1743 |
2.95e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 2.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1424 VILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKqkdapsqgeEEEELKAVMHDLQITCGEMQRK 1503
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK---------ELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1504 VELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQ 1583
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1584 LDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENESLKE--ELDRYKVQTSTLVSSLEAELSEVKL 1661
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEleALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1662 QTHIVEQENLLLKDELERLKQLhrcpdLSDFQQKMCS----ILSYNENLLKEKEVLSEELKSCADKL-AESSLLEHRIAT 1736
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREK-----LAQLELRLEGlevrIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKR 976
|
....*..
gi 672056291 1737 IKEEREA 1743
Cdd:TIGR02168 977 LENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1447-1771 |
4.60e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 4.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1447 AELELEK-----QKLQELTRNLRERVTTLAKQKDAPSQ----GEEEEELKAV-----MHDLQITCGEMQRKVELLRYESE 1512
Cdd:COG1196 177 AERKLEAteenlERLEDILGELERQLEPLERQAEKAERyrelKEELKELEAEllllkLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1513 KLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELS 1592
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1593 QKNSQNKEELKTLNQRLAEMLCQKEDpgtcTSEKWEQENESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLL 1672
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAE----AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1673 LKDELERLKQLHRCPDlsdfqqkmcSILSYNENLLKEKEVLSEELKSCADKLAESSLLEHRIATIKEEREAWEEQSQDLK 1752
Cdd:COG1196 413 LERLERLEEELEELEE---------ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330
....*....|....*....
gi 672056291 1753 SQLALSQEKVQNLEDILKN 1771
Cdd:COG1196 484 EELAEAAARLLLLLEAEAD 502
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1015-1968 |
8.01e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.37 E-value: 8.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1015 RLQSTVKDLQQATSLLVLQGGCRATAGEEAEgngalSLLQQGEQLLEENGDVLISLQKAHERAVKENAKMATEISRlqqr 1094
Cdd:pfam15921 146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLR-----KMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFR---- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1095 lkklEPGSAISSCLEERMTEISgssrehaepvmkrgtatkhFLSD---PGDHEAQGLGSTGTSSV----QRQECRTEE-- 1165
Cdd:pfam15921 217 ----SLGSAISKILRELDTEIS-------------------YLKGrifPVEDQLEALKSESQNKIelllQQHQDRIEQli 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1166 SEASLECFSELENSEDTRTESWDLKSQIIQLQEQLtvlRADCDRASERKRDLLFDISVLKKKLKMLERLpeasskykvlY 1245
Cdd:pfam15921 274 SEHEVEITGLTEKASSARSQANSIQSQLEIIQEQA---RNQNSMYMRQLSDLESTVSQLRSELREAKRM----------Y 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1246 EDAAREnacLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKM----------------------EEVTGTFLS---L 1300
Cdd:pfam15921 341 EDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladlhkrekelslekeqnkrlwDRDTGNSITidhL 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1301 ENSYDEVKLENEKLSALVLRLQGKMEEVLER--AALQGDSYSLWEGPSENLEVTSDEKMLElhQTEEECTPEVMSRHHii 1378
Cdd:pfam15921 418 RRELDDRNMEVQRLEALLKAMKSECQGQMERqmAAIQGKNESLEKVSSLTAQLESTKEMLR--KVVEELTAKKMTLES-- 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1379 eecrqetrcCEQGSTQLLAGIKAHEiawfrRKIE-THQEKPSVQNRVILE-ESAALLGLQGTHLQHEATIAE-LEL---E 1452
Cdd:pfam15921 494 ---------SERTVSDLTASLQEKE-----RAIEaTNAEITKLRSRVDLKlQELQHLKNEGDHLRNVQTECEaLKLqmaE 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1453 KQKLQELTRNLRERVTTLAKQ--KDAPSQGEEEEELKAVMHDlqitcgemqRKVELLRYESEKLQEENSILRneittlnE 1530
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVGQhgRTAGAMQVEKAQLEKEIND---------RRLELQEFKILKDKKDAKIRE-------L 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1531 EDSISNLKLEEL---NGSQEELwQKIETIEQEKASIQKMVEKLKKQVSDLklknqqldSENKELSQKNSQNK-EELKTln 1606
Cdd:pfam15921 624 EARVSDLELEKVklvNAGSERL-RAVKDIKQERDQLLNEVKTSRNELNSL--------SEDYEVLKRNFRNKsEEMET-- 692
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1607 qrlaemlcqkedpgtcTSEKWEQENESLKEELDrykvQTSTLVSSLEAElsevklQTHIVEQENLLLKDELERLKQLhrc 1686
Cdd:pfam15921 693 ----------------TTNKLKMQLKSAQSELE----QTRNTLKSMEGS------DGHAMKVAMGMQKQITAKRGQI--- 743
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1687 pdlSDFQQKMCSILSYNENLLKEKEVLSEElkscadklaeSSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLE 1766
Cdd:pfam15921 744 ---DALQSKIQFLEEAMTNANKEKHFLKEE----------KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1767 DILKNVNLQMAQIESDLQvtRQEKEalkqevmSLHLQLQNAIDkdwvsetathLSGLQGQQKRLSWNKLDHLMseEPELL 1846
Cdd:pfam15921 811 VALDKASLQFAECQDIIQ--RQEQE-------SVRLKLQHTLD----------VKELQGPGYTSNSSMKPRLL--QPASF 869
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1847 CQESKRLQTvVQNTQADLTHSREKIRQLESNllPTKHQKQLNQSCTVKPIEQEKLALKRECEQSRKERSPTSRKVSQMSS 1926
Cdd:pfam15921 870 TRTHSNVPS-SQSTASFLSHHSRKTNALKED--PTRDLKQLLQELRSVINEEPTVQLSKAEDKGRAPSLGALDDRVRDCI 946
|
970 980 990 1000
....*....|....*....|....*....|....*....|....*
gi 672056291 1927 LEREL--ETIHLENEGLKKKQVRLDEKLM-EMQPLRSAGTHSPSS 1968
Cdd:pfam15921 947 IESSLrsDICHSSSNSLQTEGSKSSETCSrEPVLLHAGELEDPSS 991
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-933 |
9.05e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 9.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 606 EAELVIEQLKEQHHRdlchLRLELEDKVRhYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAV 685
Cdd:TIGR02169 188 RLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 686 LKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRleheqELKARLQQAEESFRQEREGLAQAAAwteekarsltrdleq 765
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG-----ELEAEIASLERSIAEKERELEDAEE--------------- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 766 sHQEQLLSLMEKHALEKEELRKELSEYHQR------ELQEGREEMEtECNRRVSQIEAQFQADCEKVTERcEQTLQSLeG 839
Cdd:TIGR02169 323 -RLAKLEAEIDKLLAEIEELEREIEEERKRrdklteEYAELKEELE-DLRAELEEVDKEFAETRDELKDY-REKLEKL-K 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 840 RYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKThkerLAILSMEREQLLQD 919
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL----AADLSKYEQELYDL 474
|
330
....*....|....
gi 672056291 920 LKDLQNTSERQHSL 933
Cdd:TIGR02169 475 KEEYDRVEKELSKL 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
840-1612 |
9.55e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 9.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 840 RYRQELKDL--------LDQHLEERSQWEFEKDELTQECTEAQEQLEEV-------------LQREKATALARSQEQETL 898
Cdd:TIGR02168 217 ELKAELRELelallvlrLEELREELEELQEELKEAEEELEELTAELQELeekleelrlevseLEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 899 EKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQER-ELREPEHVLCQTGVSEQLG-SQQLARLQVE 976
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKlEELKEELESLEAELEELEAeLEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 977 HEQERREMAGKIAALEsahrvsceradQEKAEMSAEIRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQG 1056
Cdd:TIGR02168 377 LEEQLETLRSKVAQLE-----------LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1057 EQLLEEngdvlisLQKAHERAVKENAKMATEISRLQQRLKKLEPGSAISS----CLEERMTEISGSSREHAEPVMKR--- 1129
Cdd:TIGR02168 446 EEELEE-------LQEELERLEEALEELREELEEAEQALDAAERELAQLQarldSLERLQENLEGFSEGVKALLKNQsgl 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1130 ----GTATKHFLSDPGDHEA--QGLGSTGTSSVqrqecrTEESEASLECFSELENSEDTRteswdlksqiiqlqeqLTVL 1203
Cdd:TIGR02168 519 sgilGVLSELISVDEGYEAAieAALGGRLQAVV------VENLNAAKKAIAFLKQNELGR----------------VTFL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1204 RADCDRASERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDaarenaclqeelRLMEMRYADSLDSNKELTAEVYRL 1283
Cdd:TIGR02168 577 PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSY------------LLGGVLVVDDLDNALELAKKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1284 Q-------DEMKKMEEVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEvleraalqgdsyslwegpsenLEVTSDEK 1356
Cdd:TIGR02168 645 YrivtldgDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE---------------------LEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1357 MLELHQTEEEctpevmsrhhiIEECRQETRCCEQGSTQLLAGIKAHEiawfrRKIETHQEKPSVQNRVILEESAALLGLQ 1436
Cdd:TIGR02168 704 RKELEELEEE-----------LEQLRKELEELSRQISALRKDLARLE-----AEVEQLEERIAQLSKELTELEAEIEELE 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1437 GTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDapsqgeeeeELKAVMHDLQITCGEMQRKVELLRYESEKLQE 1516
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD---------ELRAELTLLNEEAANLRERLESLERRIAATER 838
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1517 ENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNS 1596
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
810
....*....|....*.
gi 672056291 1597 QNKEELKTLNQRLAEM 1612
Cdd:TIGR02168 919 ELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1521-1810 |
1.46e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1521 LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKE 1600
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1601 ELKTLNQRLAEMLCQKEDpgtcTSEKWEQENESLKEELDRYKVQTSTLvSSLEAELSEVKLQTHIVEQENLLLKDELERL 1680
Cdd:TIGR02168 762 EIEELEERLEEAEEELAE----AEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1681 KQLhrcpdlsdfqqkmcsilsyNENLLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAWEEQSQDLKSQLALSQE 1760
Cdd:TIGR02168 837 ERR-------------------LEDLEEQIEELSEDIESLAAEIEE---LEELIEELESELEALLNERASLEEALALLRS 894
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 672056291 1761 KVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAIDK 1810
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1508-1830 |
2.27e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 2.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1508 RYESEKLQEensiLRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSE 1587
Cdd:TIGR02169 670 RSEPAELQR----LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1588 NKELSQKNSQNKEELKTLNQRLAEMlcqkedpgTCTSEKWEQENESLKEELDRYKVQTST-LVSSLEAELSEVKLQTHIV 1666
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEEL--------EEDLHKLEEALNDLEARLSHSRIPEIQaELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1667 EQE--NLLLKDELERLKQLHRCPDLSDFQQKMCSILSYNENLLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAW 1744
Cdd:TIGR02169 818 EQKlnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD---LESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1745 EEQ--------------SQDLKSQLALSQEKVQNLEDILKNVNLQMAQIES------DLQVTRQEKEALKQEVMSLHLQL 1804
Cdd:TIGR02169 895 EAQlrelerkieeleaqIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelSLEDVQAELQRVEEEIRALEPVN 974
|
330 340
....*....|....*....|....*.
gi 672056291 1805 QNAIDKdwVSETATHLSGLQGQQKRL 1830
Cdd:TIGR02169 975 MLAIQE--YEEVLKRLDELKEKRAKL 998
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1503-1955 |
2.69e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.35 E-value: 2.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1503 KVELLRYESEKLQEENSI--LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQ------- 1573
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIdkFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKllklell 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1574 VSDLKLKNQ---QLDSENKELSQKNSQNKEELKTLNQRLAEM---LCQKEDPGTCTSEKWEQENESLKEELDRYKvQTST 1647
Cdd:TIGR04523 203 LSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKtteISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1648 LVSSLEAELSEVKLQTHIVEQE-----NLLLKDELERLKQLHRC--PDLSDFQQKMCSILSYNENLLKEKEVLSEELKSC 1720
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEiqNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1721 ADKLAESsllEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSL 1800
Cdd:TIGR04523 362 QRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1801 HLQLQNAIDKDWVsetathlsglqgqqKRLSWNKLDHLMSEEP---ELLCQESKRLQTVVQNTQADLTHSREKIRQLesn 1877
Cdd:TIGR04523 439 NSEIKDLTNQDSV--------------KELIIKNLDNTRESLEtqlKVLSRSINKIKQNLEQKQKELKSKEKELKKL--- 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1878 llpTKHQKQLNQscTVKPIEQEKLALKRECEQSRKERsptSRKVSQMSSLERELETIH--LENEGLKKKQVRLDEKLMEM 1955
Cdd:TIGR04523 502 ---NEEKKELEE--KVKDLTKKISSLKEKIEKLESEK---KEKESKISDLEDELNKDDfeLKKENLEKEIDEKNKEIEEL 573
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
627-1570 |
2.86e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 2.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 627 LELEDKVRHYEKQLdhtrvacekeQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQM 706
Cdd:TIGR02168 216 KELKAELRELELAL----------LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 707 VFDEEKTQLQEELRLEHE-QELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRdleqsHQEQLLSLMEKHALEKEEL 785
Cdd:TIGR02168 286 LQKELYALANEISRLEQQkQILRERLANLERQLEELEAQLEELESKLDELAEELAE-----LEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 786 RKELSEYHQRE--LQEGREEMETEcNRRVSQIEAQfQADCEKVTERCEQTLQSLEGRyRQELKDLLDQHLEERSqwEFEK 863
Cdd:TIGR02168 361 EELEAELEELEsrLEELEEQLETL-RSKVAQLELQ-IASLNNEIERLEARLERLEDR-RERLQQEIEELLKKLE--EAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 864 DELTQECTEAQEQLEEVLQREKAtalarsqeqetlektHKERLAILSMEREQLLQDLKDLqntsERQHSLLSDQMLELKR 943
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELER---------------LEEALEELREELEEAEQALDAA----ERELAQLQARLDSLER 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 944 SQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVSCERADQEKaemsaeirrlqstvkdl 1023
Cdd:TIGR02168 497 LQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAK----------------- 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1024 qQATSLLVLQGGCRATAGEEAEGNGALSLLQQGEQLLEENG--DVLISLQKAHERAVK------ENAKMATEISRLQQRL 1095
Cdd:TIGR02168 560 -KAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGflGVAKDLVKFDPKLRKalsyllGGVLVVDDLDNALELA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1096 KKLEPGSAISScleermteisgssrEHAEPVMKRGTATKhflsdpgdheaqglGSTGTSSVqRQECRTEESEASlECFSE 1175
Cdd:TIGR02168 639 KKLRPGYRIVT--------------LDGDLVRPGGVITG--------------GSAKTNSS-ILERRREIEELE-EKIEE 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1176 LENSEDtrteswDLKSQIIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEassKYKVLYEDAARENACL 1255
Cdd:TIGR02168 689 LEEKIA------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE---QLEERIAQLSKELTEL 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1256 QEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEvtgTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLERAALQ 1335
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE---ELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1336 GDSyslwegpsenlevtsdekMLELHQTEEECTPEVMSRHHIIEECRQetrcceqgstqllagikahEIAWFRRKIETHQ 1415
Cdd:TIGR02168 837 ERR------------------LEDLEEQIEELSEDIESLAAEIEELEE-------------------LIEELESELEALL 879
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1416 EKPSVQNRVILEESAALLGLqgthlqhEATIAELELEKQKLQELTRNLRERVTTLAKQKDApSQGEEEEELKAVMHDLQI 1495
Cdd:TIGR02168 880 NERASLEEALALLRSELEEL-------SEELRELESKRSELRRELEELREKLAQLELRLEG-LEVRIDNLQERLSEEYSL 951
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672056291 1496 TCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKL 1570
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1407-1683 |
3.17e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 3.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1407 FRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEEL 1486
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1487 KAVMHDLQITcgEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKM 1566
Cdd:TIGR02168 317 QLEELEAQLE--ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1567 VEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENESLKEELDRYKVQTS 1646
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270
....*....|....*....|....*....|....*..
gi 672056291 1647 TLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQL 1683
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
355-896 |
3.94e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.24 E-value: 3.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 355 NGIHQAALasfKA-EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS-----EVDDHHAAIERRNEyNLRKLDEEY-- 426
Cdd:COG4913 238 ERAHEALE---DArEQIELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRA-ELARLEAELer 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 427 -KERIAALKNELRQEREQILQQVGKQRVELEQEIEKAKTEenyiRDRLALSLKENNRLENEL-LENAEKLAEYENLTSKL 504
Cdd:COG4913 314 lEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE----LEERERRRARLEALLAALgLPLPASAEEFAALRAEA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 505 QRSLENVlaekfgdldpsSAEFFLQEERLAQMRNEYEQqcrlLQDQVDELQSELEEYQAQG-----RVLRLpcQNALSEE 579
Cdd:COG4913 390 AALLEAL-----------EEELEALEEALAEAEAALRD----LRRELRELEAEIASLERRKsnipaRLLAL--RDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 580 LdghgdGIEQDQEPgsgecnplnmsIEAELVieQLKEQHH-------RDLCHLRLEL------EDKVRHYEKQLdHTRVA 646
Cdd:COG4913 453 L-----GLDEAELP-----------FVGELI--EVRPEEErwrgaieRVLGGFALTLlvppehYAAALRWVNRL-HLRGR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 647 CEKEQVAMKQKYEQGMRTLEKQISE------------LQSEIADLQGQAAVLKEA----HHKA----------SCRHE-- 698
Cdd:COG4913 514 LVYERVRTGLPDPERPRLDPDSLAGkldfkphpfrawLEAELGRRFDYVCVDSPEelrrHPRAitragqvkgnGTRHEkd 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 699 ---EEKKQLQMVFD-----EEKTQLQEELRLEHE--QELKARLQQAEESFRQEREGLAQAA--AWTEEKARSLTRDLEQs 766
Cdd:COG4913 594 drrRIRSRYVLGFDnraklAALEAELAELEEELAeaEERLEALEAELDALQERREALQRLAeySWDEIDVASAEREIAE- 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 767 hQEQLLSLMEKHALEKEELRKELSEyHQRELQEGREEMEtECNRRVSQIEAQfQADCEKVTERCEQTLQSLEGRYRQELK 846
Cdd:COG4913 673 -LEAELERLDASSDDLAALEEQLEE-LEAELEELEEELD-ELKGEIGRLEKE-LEQAEEELDELQDRLEAAEDLARLELR 748
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 672056291 847 DLLDQHLEERSQWEFEKdeltqectEAQEQLEEvlQREKATALARSQEQE 896
Cdd:COG4913 749 ALLEERFAAALGDAVER--------ELRENLEE--RIDALRARLNRAEEE 788
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-1126 |
4.50e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 4.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 360 AALASFKAEIRHLLERVDQVVREKEKLRSDLDkaEKLKSLMASEVDDHHAaiERRNEYNLRKLDEEYKERIAAlKNELRQ 439
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIID--EKRQQLERLRREREKA--ERYQALLKEKREYEGYELLKE-KEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 440 EREQILQQVGKQRVELEQ---EIEKAKTEENYIRDRLA-LSLKENNRLENELLENAEKLAEYENLTSKLQRSLEnVLAEK 515
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKlteEISELEKRLEEIEQLLEeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA-EKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 516 FGDLDPSSAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQnALSEELDGHGDGIEQDQEPGS 595
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE-EVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 596 GECNPLNMSIEAELVIEQLKEQHHRDLCHLRLELED-KVRHYEKQLDHTRVACE--------KEQVAMKQKYEQGMRTLE 666
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGiEAKINELEEEKEDKALEikkqewklEQLAADLSKYEQELYDLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 667 KQISELQSEIADLQGQAAVLkEAHHKASCRHEEEKKQLQMVFDE----------EKTQLQEELRLEHEQELKARLQ---- 732
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEA-EAQARASEERVRGGRAVEEVLKAsiqgvhgtvaQLGSVGERYATAIEVAAGNRLNnvvv 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 733 -------QAEESFRQEREGLAQAAAWTeeKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQ-----RELQEG 800
Cdd:TIGR02169 555 eddavakEAIELLKRRKAGRATFLPLN--KMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGdtlvvEDIEAA 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 801 REEM--------ETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYR-QELKDLLDQHLEERSQWEFEKDELTQECT 871
Cdd:TIGR02169 633 RRLMgkyrmvtlEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERlEGLKRELSSLQSELRRIENRLDELSQELS 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 872 EAQEQLEEVLQREKATALARSQEQETLEKThKERLAILSMEREQLLQDLKDLQntserqhSLLSDQMLELKRSQErELRE 951
Cdd:TIGR02169 713 DASRKIGEIEKEIEQLEQEEEKLKERLEEL-EEDLSSLEQEIENVKSELKELE-------ARIEELEEDLHKLEE-ALND 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 952 PEHVLCQTGVseqlgsQQLARLQVEHEQERREMAGKIAALESA-HRVSCER--ADQEKAEMSAEIRRLQSTVKDLQQATS 1028
Cdd:TIGR02169 784 LEARLSHSRI------PEIQAELSKLEEEVSRIEARLREIEQKlNRLTLEKeyLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1029 LlvLQGGCRATAGEEAEGNGALSLLQQGEQLLEENGDVLISLQKAHERAVKEnakMATEISRLQQRLKKLEpgsAISSCL 1108
Cdd:TIGR02169 858 N--LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE---LEAQIEKKRKRLSELK---AKLEAL 929
|
810
....*....|....*...
gi 672056291 1109 EERMTEISGSSREHAEPV 1126
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIP 947
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
359-956 |
6.63e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 6.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLDEEYKERIAALkNELR 438
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK-RRDKLTEEYAELKEEL-EDLR 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 439 QEREQILQQVGKQRVEL---EQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENV---L 512
Cdd:TIGR02169 371 AELEEVDKEFAETRDELkdyREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKaleI 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 513 AEKFGDLDPSSAEFFLQEERLAQMRNEYEQqcrlLQDQVDELQSELEEYQAQGRVLR--LPCQNALSEELDGHGDGI--- 587
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDR----VEKELSKLQRELAEAEAQARASEerVRGGRAVEEVLKASIQGVhgt 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 588 --------EQDQEP----GSGECNplNMSIEAELV----IEQLKE---------------QHHRDLCHLRL--------- 627
Cdd:TIGR02169 527 vaqlgsvgERYATAievaAGNRLN--NVVVEDDAVakeaIELLKRrkagratflplnkmrDERRDLSILSEdgvigfavd 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 628 --ELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEI-------ADLQGQAAVLKEAHHKASCRHE 698
Cdd:TIGR02169 605 lvEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMtggsrapRGGILFSRSEPAELQRLRERLE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 699 EEKKQLQMVFDE------EKTQLQEELRLEHEQ--ELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDleQSHQEQ 770
Cdd:TIGR02169 685 GLKRELSSLQSElrrienRLDELSQELSDASRKigEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV--KSELKE 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 771 LLSLMEKHALEKEELRKELSEYHQRELQEGREEMETEcnrrVSQIEAQFQaDCEKVTERCEQTLQSLEGRyRQELKDLLD 850
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE----LSKLEEEVS-RIEARLREIEQKLNRLTLE-KEYLEKEIQ 836
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 851 QHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHKER------LAILSMEREQL---LQDLK 921
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERdeleaqLRELERKIEELeaqIEKKR 916
|
650 660 670
....*....|....*....|....*....|....*
gi 672056291 922 DLQNTSERQHSLLSDQMLELKRSQERELREPEHVL 956
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1394-1679 |
1.12e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1394 QLLAGIKAHEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQ 1473
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1474 KD-----APSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEE 1548
Cdd:COG1196 304 IArleerRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1549 LWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMlcqkedpgtctsEKWE 1628
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA------------AEEE 451
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 672056291 1629 QENESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELER 1679
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1423-1772 |
3.04e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1423 RVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKdapSQGEEEEELKAVMHDLQITC----- 1497
Cdd:TIGR02168 158 RAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQA---EKAERYKELKAELRELELALlvlrl 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1498 GEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDL 1577
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1578 KLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDpgtctSEKWEQENESLKEELDRYKVQTSTLVSSLEAELS 1657
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES-----LEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1658 EVKLQTHIVEQENLLLKDELERLKqlHRCPDLSDFQQKMCSILSYNEnLLKEKEVLSEELKSCADKLAESSLLEHRIATI 1737
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLE--DRRERLQQEIEELLKKLEEAE-LKELQAELEELEEELEELQEELERLEEALEEL 466
|
330 340 350
....*....|....*....|....*....|....*
gi 672056291 1738 KEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNV 1772
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
659-1099 |
5.17e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 5.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 659 EQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEEL---------RLEHEQELKA 729
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIerlereleeRERRRARLEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 730 RLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKE--ELRKELSEYHQR------ELQEGR 801
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRElrELEAEIASLERRksnipaRLLALR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 802 EEMETECNrrVSQIEAQFQADCEKVTERCEQTLQSLEG-------------RYRQELKDLLDQ-HLEERSQWEFEK---- 863
Cdd:COG4913 447 DALAEALG--LDEAELPFVGELIEVRPEEERWRGAIERvlggfaltllvppEHYAAALRWVNRlHLRGRLVYERVRtglp 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 864 -------------DELTQECTEAQEQLEEVLQREKATALARSQEQetLEKTHK--------------------------- 903
Cdd:COG4913 525 dperprldpdslaGKLDFKPHPFRAWLEAELGRRFDYVCVDSPEE--LRRHPRaitragqvkgngtrhekddrrrirsry 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 904 -------ERLAILSMEREQL---LQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQlgSQQLARL 973
Cdd:COG4913 603 vlgfdnrAKLAALEAELAELeeeLAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAEL--EAELERL 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 974 QVEHeQERREMAGKIAALESAHrvscERADQEKAEMSAEIRRLQSTVKDLQQatsllvLQGGCRATAgEEAEGNGALSLL 1053
Cdd:COG4913 681 DASS-DDLAALEEQLEELEAEL----EELEEELDELKGEIGRLEKELEQAEE------ELDELQDRL-EAAEDLARLELR 748
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 672056291 1054 QQGEQLLEENgdvlisLQKAHERAVKENakMATEISRLQQRLKKLE 1099
Cdd:COG4913 749 ALLEERFAAA------LGDAVERELREN--LEERIDALRARLNRAE 786
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
403-1202 |
8.40e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 8.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 403 EVDDHHAAIERRNEYNLRKLDEEYKERIAALK------NELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRLALS 476
Cdd:pfam15921 60 ELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQrrlnesNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 477 LKE-NNRLENEL--LENAEKLAE--YENLTSKLQR------SLENVLAEKFG---DLDPSSAEFFLQEERLAQMR----- 537
Cdd:pfam15921 140 QEDlRNQLQNTVheLEAAKCLKEdmLEDSNTQIEQlrkmmlSHEGVLQEIRSilvDFEEASGKKIYEHDSMSTMHfrslg 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 538 NEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELDGHGDGIEQ------------DQEPGSGECNPLNMSI 605
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQliseheveitglTEKASSARSQANSIQS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 606 EAELVIEQLKEQHHRDLCHLRlELEDKVRHYEKQLDHTrvacekeqvamKQKYEQGMRTLEKQISELQSEIADlqgqaav 685
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLS-DLESTVSQLRSELREA-----------KRMYEDKIEELEKQLVLANSELTE------- 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 686 lkeahhkasCRHEEEKkqlqmvFDEEKTQLQEELrleheQELKARLQQAEESFRQEREglAQAAAWTEEKARSLTRD-LE 764
Cdd:pfam15921 361 ---------ARTERDQ------FSQESGNLDDQL-----QKLLADLHKREKELSLEKE--QNKRLWDRDTGNSITIDhLR 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 765 QSHQEQLLSLMEKHALEKeELRKELSeyHQRELQEGREEMETECNRRVSQIEAQFQADCE---KVTERCEQTLQSLEGRY 841
Cdd:pfam15921 419 RELDDRNMEVQRLEALLK-AMKSECQ--GQMERQMAAIQGKNESLEKVSSLTAQLESTKEmlrKVVEELTAKKMTLESSE 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 842 RQeLKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEV--LQREKATALARSQEQETLEKTHKERLAILSMEREQlLQD 919
Cdd:pfam15921 496 RT-VSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELqhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQ-IEN 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 920 LKDLQNtserQHSLLSDQMLELKRSQERELREpehvlcqtgvsEQLGSQQLARLQVEHEQERREMAGKIAALE------- 992
Cdd:pfam15921 574 MTQLVG----QHGRTAGAMQVEKAQLEKEIND-----------RRLELQEFKILKDKKDAKIRELEARVSDLElekvklv 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 993 ---SAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSllVLQGGCRATAGE-EAEGNGALSLLQQGEQLLEENGDVLI 1068
Cdd:pfam15921 639 nagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE--VLKRNFRNKSEEmETTTNKLKMQLKSAQSELEQTRNTLK 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1069 SLQKAHERAVKENAKMATEISRLQQRLKKLEpgsaisscleermteisgSSREHAEPVMKRGTATKHFLSDPGDHEAQGL 1148
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQIDALQ------------------SKIQFLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 672056291 1149 GSTGTSS---------VQRQECRTEESEASLECfsELENSEDTRTESWDlksqIIQLQEQLTV 1202
Cdd:pfam15921 779 STVATEKnkmagelevLRSQERRLKEKVANMEV--ALDKASLQFAECQD----IIQRQEQESV 835
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
873-1611 |
1.08e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 873 AQEQLEEVLQREKatalarsqEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELRep 952
Cdd:TIGR02169 175 ALEELEEVEENIE--------RLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER-- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 953 ehvlcqtgvseqlgsqQLARLQVEHEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLLVl 1032
Cdd:TIGR02169 245 ----------------QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE- 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1033 qggcRATAGEEAEGNGALSLLQQGEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKlepgsaisscLEERM 1112
Cdd:TIGR02169 308 ----RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED----------LRAEL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1113 TEISGSSREHAEPVMKRGTATKHFLSDPGDHeaQGLGSTGTSSVQRQECRTEESEASLECFSELENSEDTRTEswDLKSQ 1192
Cdd:TIGR02169 374 EEVDKEFAETRDELKDYREKLEKLKREINEL--KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE--DKALE 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1193 IIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDAARENACLQEELRL----------- 1261
Cdd:TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvaq 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1262 ---MEMRYADSLDSNKELTAEVYRLQDE---------MKKMEEVTGTFLSL-----ENSYDEVKLEN------------- 1311
Cdd:TIGR02169 530 lgsVGERYATAIEVAAGNRLNNVVVEDDavakeaielLKRRKAGRATFLPLnkmrdERRDLSILSEDgvigfavdlvefd 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1312 ---EKLSALVLRLQGKME-------------------EVLERA-ALQGDSYSLWEGPSENLEVTSDEKML-----ELHQT 1363
Cdd:TIGR02169 610 pkyEPAFKYVFGDTLVVEdieaarrlmgkyrmvtlegELFEKSgAMTGGSRAPRGGILFSRSEPAELQRLrerleGLKRE 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1364 EEECTPEVMSRHHIIEECRQETRCCEQ--GSTQLLAGIKAHEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQ 1441
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRkiGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1442 HEATIAELELEKQKLQEltRNLRERVTTLAKQKDapSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSIL 1521
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEA--RLSHSRIPEIQAELS--KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1522 RNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEE 1601
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
810
....*....|
gi 672056291 1602 LKTLNQRLAE 1611
Cdd:TIGR02169 926 LEALEEELSE 935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1446-1805 |
1.25e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1446 IAELELEKQKLQELTRNLRERVTTLAKQKDapsQGEEEEELKAVMHDLQITcgEMQRKVELLRYESEKLQEENSILRNEI 1525
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRRERE---KAERYQALLKEKREYEGY--ELLKEKEALERQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1526 TTLNEEDSISNLKLEELNGSQEELWQKIETI-EQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELkt 1604
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1605 lnqrlaemlcqkedpgtctsEKWEQENESLKEELDRYKVQTSTL---VSSLEAELSEVKLQTHIVEQENLLLKDELERLK 1681
Cdd:TIGR02169 332 --------------------DKLLAEIEELEREIEEERKRRDKLteeYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1682 QlhrcpDLSDFQQKMCSILSYNENLLKEKEVLSEELkscadklaesSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEK 1761
Cdd:TIGR02169 392 E-----KLEKLKREINELKRELDRLQEELQRLSEEL----------ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 672056291 1762 VQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQ 1805
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1501-1772 |
3.52e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 3.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1501 QRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQvsdLKLK 1580
Cdd:TIGR04523 418 QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE---LKSK 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1581 NQQLD---SENKELSQKNSQNKEELKTLNQRLAEMlcqkedpgtcTSEKWEQENE--SLKEELDrykvqtstlvsSLEAE 1655
Cdd:TIGR04523 495 EKELKklnEEKKELEEKVKDLTKKISSLKEKIEKL----------ESEKKEKESKisDLEDELN-----------KDDFE 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1656 LSEVKLQTHIVEQENlllkdELERLKQLHRCPDLSDFQQkmcsilsynENLLKEKEVLSEELKS-CADKLAESSLLEHRI 1734
Cdd:TIGR04523 554 LKKENLEKEIDEKNK-----EIEELKQTQKSLKKKQEEK---------QELIDQKEKEKKDLIKeIEEKEKKISSLEKEL 619
|
250 260 270
....*....|....*....|....*....|....*...
gi 672056291 1735 ATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNV 1772
Cdd:TIGR04523 620 EKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEI 657
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1436-2117 |
5.04e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 5.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1436 QGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEE-EELKAVMHdlqitcgEMQRKVELLRYESEKL 1514
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKlEELRLEVS-------ELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1515 QEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQK 1594
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1595 NSQNKEELKTLNQRLAEMlcqkedpgtctsekwEQENESLKEELDRYKVQTSTLVSSLEAELSEVK-LQTHIVEQENLLL 1673
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQL---------------ELQIASLNNEIERLEARLERLEDRRERLQQEIEeLLKKLEEAELKEL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1674 KDELERLKQLHrcpdlsdfqqkmcsilsynENLLKEKEVLSEELKScadklaesslLEHRIATIKEEREAWEEQSQDLKS 1753
Cdd:TIGR02168 439 QAELEELEEEL-------------------EELQEELERLEEALEE----------LREELEEAEQALDAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1754 QLALSQEKVQNLEDILKNVNLQMAQIE---------SDLQVTRQEKEALKQEVMSLHLQLQNAIDKDWVSETATHLSglQ 1824
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLK--Q 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1825 GQQKRLSWNKLDHLMSEEPELLCQESKRLQTVVQNTQADLTHSREKIRQLESNLLPTKH-----QKQLNQSctvKPIEQE 1899
Cdd:TIGR02168 568 NELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddlDNALELA---KKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1900 KLALKRECEQSRKERSPTSRKVSQMSS-LERELETIHLENEgLKKKQVRLDEKLMEMQPLRSAGTHSPSSHWDLQLLQQQ 1978
Cdd:TIGR02168 645 YRIVTLDGDLVRPGGVITGGSAKTNSSiLERRREIEELEEK-IEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1979 AcpmvpREQFLQLQQQLLQAEKRSQHLQEELDNRTSEPNTVQGSQEHLvnlmEERMIEVEQKLKLVKR---LLQEKVNQL 2055
Cdd:TIGR02168 724 L-----SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL----EERLEEAEEELAEAEAeieELEAQIEQL 794
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672056291 2056 KEQLCKN----SKTDAMVKDLYVENAQLLKALEMTEQRQKTAEKKNFLLEEKIASLSTIVRNLAPA 2117
Cdd:TIGR02168 795 KEELKALrealDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
359-564 |
5.41e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 5.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDkaeklkslmasEVDDHHAAIERRNEYNLRKLD-EEYKERIAALKNEL 437
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-----------ALQERREALQRLAEYSWDEIDvASAEREIAELEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 438 RQERE--QILQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLenvLAEK 515
Cdd:COG4913 678 ERLDAssDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL---LEER 754
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 672056291 516 FGDLdpssaeffLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQ 564
Cdd:COG4913 755 FAAA--------LGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
690-996 |
6.63e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 6.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 690 HHKASCRHEEEKKQLQMvfdEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQE 769
Cdd:pfam17380 280 HQKAVSERQQQEKFEKM---EQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 770 QLLSLMEKhaLEKEELRKELSEYH-------QRELQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYR 842
Cdd:pfam17380 357 ERKRELER--IRQEEIAMEISRMRelerlqmERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 843 QELkdlldQHLEERSQWEFEKdeLTQECTEAQEQLEEVLQRE---KATALARSQEQETLEKTHKERLAILSMEREQLLQD 919
Cdd:pfam17380 435 REV-----RRLEEERAREMER--VRLEEQERQQQVERLRQQEeerKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 920 LKDLQN--------TSERQHSLLSDQMlelKRSQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERREMAGKIAAL 991
Cdd:pfam17380 508 MIEEERkrkllekeMEERQKAIYEEER---RREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVES 584
|
....*
gi 672056291 992 ESAHR 996
Cdd:pfam17380 585 EKARA 589
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
665-895 |
1.56e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.48 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 665 LEKQISELQSEIADLQGQAAVLKEAHhkascrheeekkqLQMVFDEEKTQLQEELrleheQELKARLQQAEESFRQEREG 744
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKN-------------GLVDLSEEAKLLLQQL-----SELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 745 LAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYH------QRELQEGREEMETECNRRVSQIEAQ 818
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHpdvialRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672056291 819 FQAdcekvTERCEQTLQSLEGRYRQELKDLldqhleerSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQ 895
Cdd:COG3206 322 LEA-----LQAREASLQAQLAQLEARLAEL--------PELEAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
368-581 |
1.86e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 53.01 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALkNELRQEREQILQQ 447
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEI-SELENEIKELEQE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 448 vgKQRVE----LEQEIEKAKTEENYIrdRLALSLKENNRLENELLENAEKLAEYENLTSKL------QRSLENVLAEKFG 517
Cdd:PRK05771 123 --IERLEpwgnFDLDLSLLLGFKYVS--VFVGTVPEDKLEELKLESDVENVEYISTDKGYVyvvvvvLKELSDEVEEELK 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672056291 518 DLDPSSAEFFlQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELD 581
Cdd:PRK05771 199 KLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1545-1832 |
1.96e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1545 SQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMlcqkedpgtcts 1624
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL------------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1625 ekwEQENESLKEELDRYKVQTSTLVSSLEaelsevklQTHIVEQENLLLKDElerlkqlhrcpDLSDFQQKMCSILSYNE 1704
Cdd:COG4942 89 ---EKEIAELRAELEAQKEELAELLRALY--------RLGRQPPLALLLSPE-----------DFLDAVRRLQYLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1705 NLLKEKEVLSEELkscadklaessllehriATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQ 1784
Cdd:COG4942 147 ARREQAEELRADL-----------------AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELA 209
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 672056291 1785 VTRQEKEALKQEVMSLHLQLQNAIDKDWVSETATHLSGLQGQQKRLSW 1832
Cdd:COG4942 210 ELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
671-900 |
2.35e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 671 ELQSEIADLQGQAAVLKEAHHKAscrhEEEKKQLQmvfdeektqlqeelRLEHEQELKARLQQAEESFRQEREGLAQAAA 750
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEAL----EDAREQIE--------------LLEPIRELAERYAAARERLAELEYLRAALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 751 WTEEKARSLTRDLEQSHQEQLLSLMEKHAL---EKEELRKELSEYHQRELQEGREEMEtECNRRVSQIEAQfQADCEKVT 827
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERleaRLDALREELDELEAQIRGNGGDRLE-QLEREIERLERE-LEERERRR 361
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672056291 828 ERCEQTLQSLEGRY---RQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEvLQREKATAlarSQEQETLEK 900
Cdd:COG4913 362 ARLEALLAALGLPLpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD-LRRELREL---EAEIASLER 433
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
438-882 |
2.50e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.03 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 438 RQEREQILQQVGKQRVELeQEIEKAKTEENYIRDRLALSLKENNRLENELLenaeklAEYENLTSKLQRSLENV-LAEKF 516
Cdd:COG3096 277 ANERRELSERALELRREL-FGARRQLAEEQYRLVEMARELEELSARESDLE------QDYQAASDHLNLVQTALrQQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 517 G--DLDPSSAEFFLQE-----ERLAQMRNEYEQQCRLLQDQVDELQSELEEYQA-----QGRVLRLpcQNALseeldghg 584
Cdd:COG3096 350 EryQEDLEELTERLEEqeevvEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQaldvqQTRAIQY--QQAV-------- 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 585 dgieQDQEPGSGECNplnmsiEAELVIEQLKEQHHRDLCHLRlELEDKVRHYEKQLDHTRVAcekeqvamKQKYEQGMRT 664
Cdd:COG3096 420 ----QALEKARALCG------LPDLTPENAEDYLAAFRAKEQ-QATEEVLELEQKLSVADAA--------RRQFEKAYEL 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 665 LEKQISELQSEIADLQGQAAVlkeahhkasCRHEEEKKQLQMVfdeektqlqeelrleheQELKARLQQAEESFRQEREg 744
Cdd:COG3096 481 VCKIAGEVERSQAWQTARELL---------RRYRSQQALAQRL-----------------QQLRAQLAELEQRLRQQQN- 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 745 laqaaawteekARSLTRDLEQSHQEQLLS--LMEKHALEKEELRKELSEYhQRELQEGREEMETE---CNRRVSQIEAQ- 818
Cdd:COG3096 534 -----------AERLLEEFCQRIGQQLDAaeELEELLAELEAQLEELEEQ-AAEAVEQRSELRQQleqLRARIKELAARa 601
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672056291 819 ---FQADcEKVTERCEQTLQSLEGryRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQ 882
Cdd:COG3096 602 pawLAAQ-DALERLREQSGEALAD--SQEVTAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1501-1810 |
2.61e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1501 QRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQ---------------------- 1558
Cdd:TIGR04523 292 QLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKeltnsesensekqreleekqne 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1559 ------EKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQEN- 1631
Cdd:TIGR04523 372 ieklkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSv 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1632 -ESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHRCPD--LSDFQQKMCSILSYNENLLK 1708
Cdd:TIGR04523 452 kELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEekVKDLTKKISSLKEKIEKLES 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1709 EKEVLSEELKSCADKLAE------SSLLEHRIATIKEEREAW---------------------EEQSQDLKSQLALSQEK 1761
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKddfelkKENLEKEIDEKNKEIEELkqtqkslkkkqeekqelidqkEKEKKDLIKEIEEKEKK 611
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 672056291 1762 VQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAIDK 1810
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
736-1616 |
3.34e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 736 ESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQI 815
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 816 EAqfqadcekvTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQ 895
Cdd:pfam02463 246 LR---------DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 896 ETLEKTHKERLAILSMEREQLLQDLKDLQNtSERQHSLLSDQMLELKRSQERELREPEHVLcqtgVSEQLGSQQLARLQV 975
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKE-LEIKREAEEEEEEELEKLQEKLEQLEEELL----AKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 976 EHEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLqqatsllvlqggcratagEEAEGNGALSLLQQ 1055
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESI------------------ELKQGKLTEEKEEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1056 GEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKLEPGSAISSCLEERMTEISGSSRehaePVMKRGTATKH 1135
Cdd:pfam02463 454 EKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKD----GVGGRIISAHG 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1136 FLSDPGDHEAQGLGSTGTSSVQRQECRTEESEASLECFSELENSED----TRTESWDLKSQIIQLQEQLTVLRADCDRAS 1211
Cdd:pfam02463 530 RLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLgarkLRLLIPKLKLPLKSIAVLEIDPILNLAQLD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1212 ERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDAARENACLQEELRLMEMRYadsldsNKELTAEVYRLQDEMKKME 1291
Cdd:pfam02463 610 KATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEV------KASLSELTKELLEIQELQE 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1292 EVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLERAALQGDSYSLWEGPSENLEVTSDEKMLELHQTEEECTPEV 1371
Cdd:pfam02463 684 KAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKE 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1372 MSRHHIIEecrQETRCCEQGSTQLLAGIKAHEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELEL 1451
Cdd:pfam02463 764 EEKSELSL---KEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1452 EKQKLQELTRNLRERVTTLAK--QKDAPSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLN 1529
Cdd:pfam02463 841 ELKEEQKLEKLAEEELERLEEeiTKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1530 EEDSISNLKLEELNGSQEELW-----------QKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQN 1598
Cdd:pfam02463 921 ERIKEEAEILLKYEEEPEELLleeadekekeeNNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
|
890
....*....|....*...
gi 672056291 1599 KEELKTLNQRLAEMLCQK 1616
Cdd:pfam02463 1001 EEEKKKLIRAIIEETCQR 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-851 |
3.39e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 404 VDDHHAAIERRNEYNlrkldeeYKERIAALKNEL----------RQEREQILQQVGKQRVELEQEIEKAKTEEnyirdrl 473
Cdd:TIGR02168 628 VDDLDNALELAKKLR-------PGYRIVTLDGDLvrpggvitggSAKTNSSILERRREIEELEEKIEELEEKI------- 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 474 alslkenNRLENELLENAEKLAEYENLTSKLQRslenvlaekfgDLDPSSAEFFLQEERLAQMRNEYEQqcrlLQDQVDE 553
Cdd:TIGR02168 694 -------AELEKALAELRKELEELEEELEQLRK-----------ELEELSRQISALRKDLARLEAEVEQ----LEERIAQ 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 554 LQSELEEYQAQgRVLRLPCQNALSEELDGHGDGIEQDQEPgsgecnPLNMSIEAELVIEQLKEQhHRDLCHLRLELEDKV 633
Cdd:TIGR02168 752 LSKELTELEAE-IEELEERLEEAEEELAEAEAEIEELEAQ------IEQLKEELKALREALDEL-RAELTLLNEEAANLR 823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 634 RHYEkQLDHTRVACEKEQVAMKQKYEQgmrtLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLqMVFDEEKT 713
Cdd:TIGR02168 824 ERLE-SLERRIAATERRLEDLEEQIEE----LSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL-ALLRSELE 897
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 714 QLQEELRlEHEQELKA------RLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEqllsLMEKHALEKEELRK 787
Cdd:TIGR02168 898 ELSEELR-ELESKRSElrreleELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA----LENKIEDDEEEARR 972
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 672056291 788 ELSEyHQRELQE-GR------EEMEtECNRRVSQIEAQFqADCEKVTERCEQTLQSLEGRYRQELKDLLDQ 851
Cdd:TIGR02168 973 RLKR-LENKIKElGPvnlaaiEEYE-ELKERYDFLTAQK-EDLTEAKETLEEAIEEIDREARERFKDTFDQ 1040
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
414-884 |
3.41e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 52.65 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 414 RNEYNLRKLDEEykerIAALKNELRQEREQI-------------LQQVGKQRVELEQEIEKAkteenyiRDRLALSlken 480
Cdd:PRK04863 276 RHANERRVHLEE----ALELRRELYTSRRQLaaeqyrlvemareLAELNEAESDLEQDYQAA-------SDHLNLV---- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 481 nrleNELLENAEKLAEYENLTSKLQRSLEnvlaekfgdldpsSAEFFLQEerLAQMRNEYEQQCRLLQDQVDELQSELEE 560
Cdd:PRK04863 341 ----QTALRQQEKIERYQADLEELEERLE-------------EQNEVVEE--ADEQQEENEARAEAAEEEVDELKSQLAD 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 561 YQ-----AQGRVLRLpcQNALseeldghgdgieQDQEPGSGECNPLNMSIE-AELVIEQLKEQHHrdlchlrlELEDKVR 634
Cdd:PRK04863 402 YQqaldvQQTRAIQY--QQAV------------QALERAKQLCGLPDLTADnAEDWLEEFQAKEQ--------EATEELL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 635 HYEKQLDHTRVAcekeqvamKQKYEQGMRTLEKQISELQSEIADLQGQAAVLkeahhkascRHEEEKKQLQMVfdeektq 714
Cdd:PRK04863 460 SLEQKLSVAQAA--------HSQFEQAYQLVRKIAGEVSRSEAWDVARELLR---------RLREQRHLAEQL------- 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 715 lqeelrleheQELKARLQQAEESFRQEREglaqaaawteekARSLTRDLEQSHQEQLL--SLMEKHALEKEELRKELSEY 792
Cdd:PRK04863 516 ----------QQLRMRLSELEQRLRQQQR------------AERLLAEFCKRLGKNLDdeDELEQLQEELEARLESLSES 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 793 hQRELQEGREEMETECN------RRVSQIEAQFQADCEKVTERCEQTLQSLEGRyrQELKDLLDQHLEERSQWEFEKDEL 866
Cdd:PRK04863 574 -VSEARERRMALRQQLEqlqariQRLAARAPAWLAAQDALARLREQSGEEFEDS--QDVTEYMQQLLERERELTVERDEL 650
|
490
....*....|....*...
gi 672056291 867 TQECTEAQEQLEEVLQRE 884
Cdd:PRK04863 651 AARKQALDEEIERLSQPG 668
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1502-1781 |
3.49e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 52.24 E-value: 3.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1502 RKVELL---RYES---EKLQEENSIlrnEITTLNEEdsISNLKLEELNGSQEELWQKIETIEQ-------EKASIQKM-V 1567
Cdd:PRK05771 7 KKVLIVtlkSYKDevlEALHELGVV---HIEDLKEE--LSNERLRKLRSLLTKLSEALDKLRSylpklnpLREEKKKVsV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1568 EKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQK---EDP-------------GTCTSEKWE--- 1628
Cdd:PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGnfdLDLslllgfkyvsvfvGTVPEDKLEelk 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1629 QENESLKEELDRYKVQTSTLVSSLEAELSEvklqthivEQENLLLKDELERLKqlhrCPDLSDFQQKMCSILSYNENLLK 1708
Cdd:PRK05771 162 LESDVENVEYISTDKGYVYVVVVVLKELSD--------EVEEELKKLGFERLE----LEEEGTPSELIREIKEELEEIEK 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1709 EKEVLSEELKSCADKLAEssllehRIATIKEEREAwEEQSQDLKSQLALSQ-----------EKVQNLEDILKNVNLQMA 1777
Cdd:PRK05771 230 ERESLLEELKELAKKYLE------ELLALYEYLEI-ELERAEALSKFLKTDktfaiegwvpeDRVKKLKELIDKATGGSA 302
|
....
gi 672056291 1778 QIES 1781
Cdd:PRK05771 303 YVEF 306
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
711-1030 |
4.59e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.05 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 711 EKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAaawTEEKARSLTR--DLEQSHQEQLLSLMEKHALEKEELRke 788
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQE---KEEKAREVERrrKLEEAEKARQAEMDRQAAIYAEQER-- 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 789 LSEYHQRELQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEER------SQWEFE 862
Cdd:pfam17380 342 MAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEerqrkiQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 863 KDELTQECTEAQEQLEEVLQREKATALARSQEQEtlekthkerlailsMEREQLLQDLKDLQNTSERQHSLLSDQMLELK 942
Cdd:pfam17380 422 MEQIRAEQEEARQREVRRLEEERAREMERVRLEE--------------QERQQQVERLRQQEEERKRKKLELEKEKRDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 943 RSQERELREPEHVLCQTgvSEQLGSQQLARLQVEHEQERREMAgkIAALESAHRVSCERADQEKAEmsaEIRRLQSTVKD 1022
Cdd:pfam17380 488 RAEEQRRKILEKELEER--KQAMIEEERKRKLLEKEMEERQKA--IYEEERRREAEEERRKQQEME---ERRRIQEQMRK 560
|
....*...
gi 672056291 1023 LQQATSLL 1030
Cdd:pfam17380 561 ATEERSRL 568
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
529-982 |
4.75e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 4.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 529 QEERLAQMRNEYEQqCRLLQDQVDELQSELEEYQAQGRVLRLPcQNALSEELDGHGDGIEQDQepgsgecnplnmsIEAE 608
Cdd:COG4717 76 LEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREE-LEKLEKLLQLLPLYQELEA-------------LEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 609 LVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKE 688
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 689 AHHKASCRHEEEKKQLQMVFDEEK-TQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAA---WTEEKARSLTRDLE 764
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLgllALLFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 765 QSHQEQLLSLMEKHALEKEELRKELSEYH-QRELQEGREEMETECNRRVSQIEAQFQADCEKVT-ERCEQTLQSLEGRYR 842
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEEELQlEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 843 QELKDLLDQHLEERSQWEfekdELTQECTEAQEQLEEvlQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKD 922
Cdd:COG4717 381 VEDEEELRAALEQAEEYQ----ELKEELEELEEQLEE--LLGELEELLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 923 LQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERR 982
Cdd:COG4717 455 LAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1174-1682 |
4.94e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 4.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1174 SELENSEDTRTESWDLKSQIIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLE----RLPEAsSKYKVLYEDAA 1249
Cdd:PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEekvkELKEL-KEKAEEYIKLS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1250 RENACLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKlENEKLSALVLRLQGKMEEVL 1329
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1330 ERAAlqgdsyslwegpseNLEVTSDEKMLELHQTEEEctpEVMSRhhiIEECRQETRCCEQGSTQLLAGIKAHEIAwfrr 1409
Cdd:PRK03918 379 KRLT--------------GLTPEKLEKELEELEKAKE---EIEEE---ISKITARIGELKKEIKELKKAIEELKKA---- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1410 kiethQEKPSVQNRVILEESAALLgLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEELKAV 1489
Cdd:PRK03918 435 -----KGKCPVCGRELTEEHRKEL-LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1490 MHDLQ-ITCGEMQRKVEllryESEKLQEENSILRNEITTLNEEDSisnlKLEELNGSQEELWQKIETIEQEKASIQKMVE 1568
Cdd:PRK03918 509 EEKLKkYNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1569 KLK-KQVSDLKLKNQQLDSENKE-LSQKNS-QNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENESLKEELDRYKVQT 1645
Cdd:PRK03918 581 ELGfESVEELEERLKELEPFYNEyLELKDAeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 672056291 1646 -----------STLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQ 1682
Cdd:PRK03918 661 yeelreeylelSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
361-846 |
6.47e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 6.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 361 ALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLR-----KLDEEYKERIAALKN 435
Cdd:PRK02224 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDllaeaGLDDADAEAVEARRE 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 436 ELRQEREQILQQVGKQRV---ELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENvL 512
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE-L 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 513 AEKFGDL--DPSSAEFFLQE-----ERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQgrvlrlPCQNALSEEldGHGD 585
Cdd:PRK02224 397 RERFGDApvDLGNAEDFLEElreerDELREREAELEATLRTARERVEEAEALLEAGKCP------ECGQPVEGS--PHVE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 586 GIEQDQEPGSgecnplnmSIEAELviEQLKEQhhRDLCHLRLELEDKVRHYEKQLDHTRvacEKEQVAMKQKYEQGMRTL 665
Cdd:PRK02224 469 TIEEDRERVE--------ELEAEL--EDLEEE--VEEVEERLERAEDLVEAEDRIERLE---ERREDLEELIAERRETIE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 666 EK--QISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQmVFDEEKTQLQEEL----RLEHEQELKARLQQAEESFR 739
Cdd:PRK02224 534 EKreRAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA-ELNSKLAELKERIesleRIRTLLAAIADAEDEIERLR 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 740 QEREGLAQAAAWTEEK---ARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYhQRELQEGREEMETECNRRVSQIE 816
Cdd:PRK02224 613 EKREALAELNDERRERlaeKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK-LDELREERDDLQAEIGAVENELE 691
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 672056291 817 --AQFQADCEKVTERCE---------QTLQSLEGRYRQELK 846
Cdd:PRK02224 692 elEELRERREALENRVEalealydeaEELESMYGDLRAELR 732
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1443-1667 |
6.49e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 6.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1443 EATIAELELEKQKLQELTRNLRERVTTLAKQKDA------PSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQE 1516
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEElnkkikDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1517 ENSILRNEITTLNEEDSISNLKLEELNGSQ--------------EELWQKIETIE-------QEKASIQKMVEKLKKQVS 1575
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRdklteeyaelkeelEDLRAELEEVDkefaetrDELKDYREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1576 DLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKwEQENESLKEELDRYKVQ---TSTLVSSL 1652
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ-EWKLEQLAADLSKYEQElydLKEEYDRV 481
|
250
....*....|....*
gi 672056291 1653 EAELSEVKLQTHIVE 1667
Cdd:TIGR02169 482 EKELSKLQRELAEAE 496
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1427-1797 |
7.14e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 7.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1427 EESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEELKAVMHDLQITCGEMQRKVEL 1506
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1507 ---LRYESEKLQEENSILRNEITTLNEEDSISNLK-LEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLklknq 1582
Cdd:COG4717 158 lreLEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL----- 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1583 QLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTS-------------------EKWEQENESLKEELDRYKV 1643
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllallflllAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1644 QTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHRcpDLSDFQQKM--CSILSYNENLLKEKEVLSEE----- 1716
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR--EAEELEEELqlEELEQEIAALLAEAGVEDEEelraa 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1717 ---LKSCADKLAESSLLEHRIATIKEER---------EAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESD-- 1782
Cdd:COG4717 391 leqAEEYQELKEELEELEEQLEELLGELeellealdeEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDge 470
|
410
....*....|....*
gi 672056291 1783 LQVTRQEKEALKQEV 1797
Cdd:COG4717 471 LAELLQELEELKAEL 485
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
431-909 |
8.18e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 8.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 431 AALKNELRQEREQILQQVGKQRVELEQEIEKAKTEenyiRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLEN 510
Cdd:COG4717 45 AMLLERLEKEADELFKPQGRKPELNLKELKELEEE----LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 511 VlaekfgdldpssaEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRlpcqnALSEELDGHGDGIEQD 590
Cdd:COG4717 121 L-------------EKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELE-----ELEAELAELQEELEEL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 591 QEPGSGEC-NPLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKvrhyEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQI 669
Cdd:COG4717 183 LEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEEL----EEELEQLENELEAAALEERLKEARLLLLIAAAL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 670 SELQSEIADLQGQA----------------AVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQ 733
Cdd:COG4717 259 LALLGLGGSLLSLIltiagvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 734 AEESFRQEREGLAQAAAWTEEKARsltRDLEQSHQEQLLSLMEKHALEKEELRKELSEYhqRELQEGREEMEtECNRRVS 813
Cdd:COG4717 339 LLELLDRIEELQELLREAEELEEE---LQLEELEQEIAALLAEAGVEDEEELRAALEQA--EEYQELKEELE-ELEEQLE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 814 QIEAQFQADCEKVT-ERCEQTLQSLEGRyRQELKDLLDQHLEERSQWEFEK---------DELTQECTEAQEQLEEVLQR 883
Cdd:COG4717 413 ELLGELEELLEALDeEELEEELEELEEE-LEELEEELEELREELAELEAELeqleedgelAELLQELEELKAELRELAEE 491
|
490 500
....*....|....*....|....*.
gi 672056291 884 EKATALARSQEQETLEKTHKERLAIL 909
Cdd:COG4717 492 WAALKLALELLEEAREEYREERLPPV 517
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1450-1772 |
9.88e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 9.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1450 ELEKQKLQELTRNLRERVTTLAKQkdapSQGEEEEELKAvmhdlqitcgEMQRKVELLRYESEKLQEENSILRNEITTLN 1529
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEE----AKKAEEAKIKA----------EELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1530 EEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKlKNQQLDSENKELSQKNSQNKEElKTLNQRL 1609
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEELKKA-EEENKIK 1731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1610 AEMLCQKEDpgtctsEKWEQENESLKEELDRYKVQtsTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHRCPDL 1689
Cdd:PTZ00121 1732 AEEAKKEAE------EDKKKAEEAKKDEEEKKKIA--HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1690 SDFQQKMcsILSYNENLL---KEKEVLSEELKSCADklAESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKvQNLE 1766
Cdd:PTZ00121 1804 FDNFANI--IEGGKEGNLvinDSKEMEDSAIKEVAD--SKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK-DLKE 1878
|
....*.
gi 672056291 1767 DILKNV 1772
Cdd:PTZ00121 1879 DDEEEI 1884
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
377-1022 |
1.03e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 377 DQVVREKEKLRSDLDKAEKLKSLMASEV--DDHHAAIERRNEYNLRK-------LDEEYKERIAALKNELRQEREQILQQ 447
Cdd:PTZ00121 1039 DDVLKEKDIIDEDIDGNHEGKAEAKAHVgqDEGLKPSYKDFDFDAKEdnradeaTEEAFGKAEEAKKTETGKAEEARKAE 1118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 448 VGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLEnvlAEKFGDLDPSSAEFF 527
Cdd:PTZ00121 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA---ARKAEEVRKAEELRK 1195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 528 LQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVlRLPCQNALSEELDGHGDGIEQDQEPGSGECNPLNMSIEA 607
Cdd:PTZ00121 1196 AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA-KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 608 ElviEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVA--MKQKYEQGMRTLEKqiSELQSEIADLQGQAAV 685
Cdd:PTZ00121 1275 E---EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA--AKKKAEEAKKAAEAAK 1349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 686 LKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKA-RLQQAEESFRQEREGLAQAAAwTEEKARSLTRDLE 764
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdEAKKKAEEDKKKADELKKAAA-AKKKADEAKKKAE 1428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 765 QSHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADcEKVTERCEQTLQSLEGRYRQE 844
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 845 LK---DLLDQHLEERSQWEFEKDELTQECTEAQ--EQLEEVLQREKATALARSQEQETLEKTHKERlailsMEREQLLQD 919
Cdd:PTZ00121 1508 AKkkaDEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAEEAKKAE-----EDKNMALRK 1582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 920 LKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQtgvSEQLGSQQLARLQVEHEQERREMAGKIA-ALESAHRVS 998
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK---AEELKKAEEEKKKVEQLKKKEAEEKKKAeELKKAEEEN 1659
|
650 660
....*....|....*....|....
gi 672056291 999 CERADQEKAEMSAEIRRLQSTVKD 1022
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEAKKA 1683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
347-1030 |
1.08e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 347 ENELLVTKNGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERrneynlrkldeey 426
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG------------- 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 427 kerIAALKNELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRlalslkennrlenellenAEKLAEYENLTSKLQR 506
Cdd:TIGR02169 432 ---IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL------------------KEEYDRVEKELSKLQR 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 507 SLENVLAEKfGDLDPSSAEFFLQEERLaqmrneyEQQCRLLQDQVDELQSELEEYQAQGRVL---RLpcQNALSEELDGH 583
Cdd:TIGR02169 491 ELAEAEAQA-RASEERVRGGRAVEEVL-------KASIQGVHGTVAQLGSVGERYATAIEVAagnRL--NNVVVEDDAVA 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 584 GDGIE--QDQEPGSGECNPLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQG 661
Cdd:TIGR02169 561 KEAIEllKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYR 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 662 MRTLEkqiselqSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDeektqlqeelRLEHEQELKARLQQAEESFRQE 741
Cdd:TIGR02169 641 MVTLE-------GELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRE----------RLEGLKRELSSLQSELRRIENR 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 742 REGLAQAAAWTEEKARSLTRDLEQshqeqllsLMEKHALEKEELrkELSEYHQRELQEGREEMETECNRRVSQIEAQfQA 821
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQ--------LEQEEEKLKERL--EELEEDLSSLEQEIENVKSELKELEARIEEL-EE 772
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 822 DCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFEKDELTQEcTEAQEQLEEVLQREKATALARSQEQETLEKT 901
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK-LNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 902 HKERLAILSMEREQLLQDLKDLQNtSERQhslLSDQMLELKRsqERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQER 981
Cdd:TIGR02169 852 IEKEIENLNGKKEELEEELEELEA-ALRD---LESRLGDLKK--ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 672056291 982 REmagkIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLL 1030
Cdd:TIGR02169 926 LE----ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
528-951 |
1.24e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.72 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 528 LQEERLAQMRNEYEQQcrllqdqvDELQSELE-EYQAQGRVLRLpCQNALseeldGHGDGIEQDQEpgsgECNPLNMSI- 605
Cdd:COG3096 303 EEQYRLVEMARELEEL--------SARESDLEqDYQAASDHLNL-VQTAL-----RQQEKIERYQE----DLEELTERLe 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 606 EAELVIEQLKEQHHRdlCHLRLEL-EDKVRHYEKQLDHTRVACEKEQVAMKQkYEQGMRTLEKqiSELQSEIADLQGQAA 684
Cdd:COG3096 365 EQEEVVEEAAEQLAE--AEARLEAaEEEVDSLKSQLADYQQALDVQQTRAIQ-YQQAVQALEK--ARALCGLPDLTPENA 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 685 VLKEAHHKAscrheEEKKQLQMVFD-EEKTQLQEELRLEHEQELKARLQQAEESFRqereglaqAAAWteEKARSLTRDL 763
Cdd:COG3096 440 EDYLAAFRA-----KEQQATEEVLElEQKLSVADAARRQFEKAYELVCKIAGEVER--------SQAW--QTARELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 764 -EQSHQEQLLslmekhalekEELRKELSEYHQRELQegreemetecnrrvsQIEAQFQAdcekvTERCEQTLQSLEGRyr 842
Cdd:COG3096 505 rSQQALAQRL----------QQLRAQLAELEQRLRQ---------------QQNAERLL-----EEFCQRIGQQLDAA-- 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 843 qelkDLLDQHLEErsqWEFEKDELTQECTEAQEQLEEVLQREKATAlARSQEQETLE---KTHKERLAILSMEREQLLQD 919
Cdd:COG3096 553 ----EELEELLAE---LEAQLEELEEQAAEAVEQRSELRQQLEQLR-ARIKELAARApawLAAQDALERLREQSGEALAD 624
|
410 420 430
....*....|....*....|....*....|....*...
gi 672056291 920 LKDLQNT------SERQHSLLSDQMLELKRSQERELRE 951
Cdd:COG3096 625 SQEVTAAmqqlleREREATVERDELAARKQALESQIER 662
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1502-1952 |
1.48e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1502 RKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDlklKN 1581
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE---KQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1582 QQLDSENKELSQKNSQNKE---ELKTLNQrlaemlcQKEDPGTCTSEKWEQENESLKEELDRYKVQTSTLVSSLEAELSE 1658
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQlksEISDLNN-------QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1659 VKLQTHIVEQENLLLKDELERLKQLhrcpdLSDFQQKMCSILSYNENLLKEKEVLSEELKscaDKLAESSLLEHRIATIK 1738
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEEKQNE-----IEKLKKENQSYKQEIKNLESQINDLESKIQ---NQEKLNQQKDEQIKKLQ 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1739 EEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNaIDKDWVSETaT 1818
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ-KQKELKSKE-K 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1819 HLSGLQGQQKRLSwNKLDHLMSEEPELLcQESKRLQTVVQNTQADLTHSREKIRQLESNLLPTKHQKQLNQSC-TVKPIE 1897
Cdd:TIGR04523 497 ELKKLNEEKKELE-EKVKDLTKKISSLK-EKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNkEIEELK 574
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672056291 1898 QEKLALKRECEQSRKE-----------RSPTSRKVSQMSSLERELETIHLENEGLKKKQVRLDEKL 1952
Cdd:TIGR04523 575 QTQKSLKKKQEEKQELidqkekekkdlIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKK 640
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1403-1954 |
1.49e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1403 EIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEE 1482
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1483 E-----EELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLK-----LEELNGSQEELWQK 1552
Cdd:TIGR02168 376 EleeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeLEELEEELEELQEE 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1553 IETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQ-------------KNSQNKEELKTLNQRLAEMLCQKEDP 1619
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkALLKNQSGLSGILGVLSELISVDEGY 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1620 GTC---------------TSEKWEQENESLKE---------ELDRYKVQ--TSTLVSSLEAELSEVKLQTHIVEQENLLL 1673
Cdd:TIGR02168 536 EAAieaalggrlqavvveNLNAAKKAIAFLKQnelgrvtflPLDSIKGTeiQGNDREILKNIEGFLGVAKDLVKFDPKLR 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1674 KDELERLKQLHRCPDLSDFQQkMCSILSYNENL--LKEKEVLSEELKSCADKLAESSLLEHR--IATIKEEREAWEEQSQ 1749
Cdd:TIGR02168 616 KALSYLLGGVLVVDDLDNALE-LAKKLRPGYRIvtLDGDLVRPGGVITGGSAKTNSSILERRreIEELEEKIEELEEKIA 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1750 DLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAidkdwvsetatHLSGLQGQQKR 1829
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL-----------SKELTELEAEI 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1830 LSWNKLDHLMSEEPELLCQESKRLQTVVQNTQADLTHSREKIRQLESNLLPTKhQKQLNQSCTVKPIEQEKLALKRECEQ 1909
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-EEAANLRERLESLERRIAATERRLED 842
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 672056291 1910 SRKERSPTSRKVS----QMSSLERELETIHLENEGLKKKQVRLDEKLME 1954
Cdd:TIGR02168 843 LEEQIEELSEDIEslaaEIEELEELIEELESELEALLNERASLEEALAL 891
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1441-1956 |
2.24e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1441 QHEATIAELELEKQKLQELTRNLRERVTTLAKQKDapSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSI 1520
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD--KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1521 LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKE 1600
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1601 ELKTLNQRLAEMlcQKEdpgtctSEKWEQENESLKEELDRYKVQTSTLVSSLE------AELSEVK-------------- 1660
Cdd:TIGR02169 477 EYDRVEKELSKL--QRE------LAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvAQLGSVGeryataievaagnr 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1661 LQTHIVEQENL------LLKDE---------LERLKQLHRCP-------------DLSDFQQKMCSILSYN-------EN 1705
Cdd:TIGR02169 549 LNNVVVEDDAVakeaieLLKRRkagratflpLNKMRDERRDLsilsedgvigfavDLVEFDPKYEPAFKYVfgdtlvvED 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1706 LLKEKEVL------------------------------------SEELKSCADKL----AESSLLEHRIATIKEEREAWE 1745
Cdd:TIGR02169 629 IEAARRLMgkyrmvtlegelfeksgamtggsraprggilfsrsePAELQRLRERLeglkRELSSLQSELRRIENRLDELS 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1746 EQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSL-----HLQLQNAIDKDWVSETATHL 1820
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELearieELEEDLHKLEEALNDLEARL 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1821 SGLQGQQKRLSWNKLDhlmseepellcQESKRLQTVVQNTQADLthsreKIRQLESNLLPTKHQKQLNQsctVKPIEQEK 1900
Cdd:TIGR02169 789 SHSRIPEIQAELSKLE-----------EEVSRIEARLREIEQKL-----NRLTLEKEYLEKEIQELQEQ---RIDLKEQI 849
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 672056291 1901 LALKRECEQSRKERSPTSRKVSQMSSLERELETihlENEGLKKKQVRLDEKLMEMQ 1956
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEAALRDLES---RLGDLKKERDELEAQLRELE 902
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
848-1685 |
2.50e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 848 LLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDL--QN 925
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLlqEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 926 TSERQHSLLSDQMLELKRSQERELREPEHVLCQTgvSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVScERADQE 1005
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK--EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL-KESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1006 KAEMSAEIRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQGEQLL------EENGDVLISLQKAHERAVK 1079
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAkkklesERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1080 ENAKMATEISRLQQRLKKLEPGSAISSCLEERMTEISGSSREHAEPV-MKRGTATKHFLSDPGDHEAQGLGSTGTSSVQR 1158
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1159 QECRTEESEASLECFSELENSEDTRTESWDLKSQIIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEAS 1238
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1239 SKYKVLYEDAARENAcLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKLENEKLSALV 1318
Cdd:pfam02463 563 RQKLVRALTELPLGA-RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1319 LRLQGKMEEVLERAALQGDSYSLWEGPSENLEVTSDEKMLELHQTEEECTPEVMSRHHIIEECRQETRCCEQGSTQLLAG 1398
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1399 IKAHEIAWFRRKIETHQEKpsvQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPS 1478
Cdd:pfam02463 722 LLADRVQEAQDKINEELKL---LKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1479 QGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSIsnlKLEELNGSQEELWQKIETIEQ 1558
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE---ELERLEEEITKEELLQELLLK 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1559 EKASIQKMVEKLKKQVsdLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENE-----S 1633
Cdd:pfam02463 876 EEELEEQKLKDELESK--EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEkekeeN 953
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 672056291 1634 LKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHR 1685
Cdd:pfam02463 954 NKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKK 1005
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1446-1961 |
3.23e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1446 IAELELEKQKLQELTRNLRERVTTLAKQ-KDAPSQGEEEEELKAVMhDLQITCGEMQRKVELLRYESEKLQEENSILRNE 1524
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEiEELEEKVKELKELKEKA-EEYIKLSEFYEEYLDELREIEKRLSRLEEEING 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1525 ITTLNEEDSISNLKLEELNGSQEELWQKIETIE------QEKASIQKMVEKLKKQVSDLKLknQQLDSENKELSQKNSQN 1598
Cdd:PRK03918 326 IEERIKELEEKEERLEELKKKLKELEKRLEELEerhelyEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEI 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1599 KEELKTLNQRLAEMLCQKED-----------PGTCTSEKWEQENESLKEELDRYKVQtstlVSSLEAELSEVKLQTHIVE 1667
Cdd:PRK03918 404 EEEISKITARIGELKKEIKElkkaieelkkaKGKCPVCGRELTEEHRKELLEEYTAE----LKRIEKELKEIEEKERKLR 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1668 QENLLLKDELERLKQLHRCPDLSDFQQKMCSILS-YNENLLKEKEVLSEELKSCADKLaessllEHRIATIKEEREAWEE 1746
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKkYNLEELEKKAEEYEKLKEKLIKL------KGEIKSLKKELEKLEE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1747 qsqdLKSQLALSQEKVQNLEDILKNVNLQMAQI----ESDLQVTRQEKEALKQEVMSLhlqlqnaidKDWVSEtathlsg 1822
Cdd:PRK03918 554 ----LKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPFYNEYLEL---------KDAEKE------- 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1823 LQGQQKRLSWNKLDHLMSEEPellcqeskrlqtvVQNTQADLTHSREKIRQLESNLLPTKHQKqlnqsctvkpIEQEKLA 1902
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEE-------------LAETEKRLEELRKELEELEKKYSEEEYEE----------LREEYLE 670
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 672056291 1903 LKREceqsrkerspTSRKVSQMSSLERELETIHLENEGLKKKQVRLDEKLMEMQPLRSA 1961
Cdd:PRK03918 671 LSRE----------LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
450-803 |
3.51e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 450 KQRVELEQEIEKakTEENYirDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENVLAEKFGDLDPSSAEFFLQ 529
Cdd:TIGR02168 172 ERRKETERKLER--TRENL--DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 530 EERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQgrvlrlpcQNALSEELDGHGDGIEqdqepgsgecnplnmsiEAEL 609
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEE--------IEELQKELYALANEIS-----------------RLEQ 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 610 VIEQLKEQHHRdlchlrleLEDKVRHYEKQLDHTRvacekeqvAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEA 689
Cdd:TIGR02168 303 QKQILRERLAN--------LERQLEELEAQLEELE--------SKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 690 HHKASCRHEEEKKQLQM----VFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQ 765
Cdd:TIGR02168 367 LEELESRLEELEEQLETlrskVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
330 340 350
....*....|....*....|....*....|....*...
gi 672056291 766 SHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREE 803
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1730-1956 |
3.89e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1730 LEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAID 1809
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1810 KDWVSETATHLSGLqgqqkrlswnkldhLMSEEPELLCQESKRLQTVVQNTQADLTHSREKIRQLEsnllpTKHQKQLNQ 1889
Cdd:COG4942 112 ALYRLGRQPPLALL--------------LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA-----ALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672056291 1890 SCTVKPIEQEKLALKRECEQSRKERSptsrkvSQMSSLERELETIHLENEGLKKKQVRLDEKLMEMQ 1956
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQ------KLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
307-505 |
4.52e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 307 VERILDTWQEEGIE-NSQEILKALDFsLDGNINLTELTL-ALENELLVTKNgihQAALASFKAEIRHLLERVDQVVREKE 384
Cdd:COG3206 154 ANALAEAYLEQNLElRREEARKALEF-LEEQLPELRKELeEAEAALEEFRQ---KNGLVDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 385 KLRSDLDKAE----------KLKSLMASEVDDHHAAIERRNEYN-----LRKLDEEYKER---IAALKNELRQEREQILQ 446
Cdd:COG3206 230 EARAELAEAEarlaalraqlGSGPDALPELLQSPVIQQLRAQLAeleaeLAELSARYTPNhpdVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 672056291 447 QVGKQRVELEQEIEKAKTEENYIRDRLAlslkennRLENELLENAEKLAEYENLTSKLQ 505
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLA-------QLEARLAELPELEAELRRLEREVE 361
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
523-1020 |
5.61e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 523 SAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELDGHGDGIEQDQEPGSGECNPLN 602
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKM 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 603 MSIEAELVIEQLKEQHHRDLCHLRLELEDKVR-HYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQG 681
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSqEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 682 QAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHE--------QELKARLQQAEESFRQEREGLAQaaawtE 753
Cdd:TIGR00618 401 ELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCaaaitctaQCEKLEKIHLQESAQSLKEREQQ-----L 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 754 EKARSLTRDLEQSHQEQLLSLMEkHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQT 833
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLE-LQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 834 LQSLEgRYRQELKDLLDQHLEERSQWEFEKDE---LTQECTEAQEQLEEVLQREKATALA-RSQEQETLEKTHKERLAIL 909
Cdd:TIGR00618 555 RKQRA-SLKEQMQEIQQSFSILTQCDNRSKEDipnLQNITVRLQDLTEKLSEAEDMLACEqHALLRKLQPEQDLQDVRLH 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 910 SMEREQLLQDLK--------DLQNTSERQHSLLSDQM-LELKRSQERELREPEHVLCQ-TGVSEQLG-SQQLARLQVEHE 978
Cdd:TIGR00618 634 LQQCSQELALKLtalhalqlTLTQERVREHALSIRVLpKELLASRQLALQKMQSEKEQlTYWKEMLAqCQTLLRELETHI 713
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 672056291 979 QERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTV 1020
Cdd:TIGR00618 714 EEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV 755
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1441-1726 |
5.72e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1441 QHEATIAELELEKQKLQELTRNLRERVTTLAKQKDapSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSI 1520
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK--DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1521 LRNEITTLNEEdsisnlkleelngsqeelwqkIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKE 1600
Cdd:TIGR04523 487 KQKELKSKEKE---------------------LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1601 ELKTLNQRLAEMLCQKE-DPGTCTSEKWEQENESLKEELDrykvQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELER 1679
Cdd:TIGR04523 546 ELNKDDFELKKENLEKEiDEKNKEIEELKQTQKSLKKKQE----EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEK 621
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 672056291 1680 LKQLHRcpdlsDFQQKMCSILSYNENLLKEKEVLSEELKSCADKLAE 1726
Cdd:TIGR04523 622 AKKENE-----KLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
315-983 |
6.28e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 315 QEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNGIHQAALAsfKAEIRHLLERVDQVVREKEKLRSDLDKAE 394
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK--KAEKELKKEKEEIEELEKELKELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 395 KLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRLA 474
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 475 LSLKENNRLENELLENAEKLAEYENLTSKLQRSLENV-----------------LAEKFGDLDPSSAEFFLQEERLAQMR 537
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSedllketqlvklqeqleLLLSRQKLEERSQKESKARSGLKVLL 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 538 NEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELdghGDGIEQDQEPGSGECNPLNMSIEAELVIEQLKEQ 617
Cdd:pfam02463 514 ALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSAT---ADEVEERQKLVRALTELPLGARKLRLLIPKLKLP 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 618 HHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRH 697
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 698 EEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEE----SFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLS 773
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKeelkKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 774 LMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADCEKVTERcEQTLQSLEGRYRQELKDLLDQHL 853
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRAL-EEELKEEAELLEEEQLLIEQEEK 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 854 EERSQWEFEKDELtQECTEAQEQLEEVLQREKATALARSQEQETLEKTHK---ERLAILSMEREQLLQDLKDLQNTSERQ 930
Cdd:pfam02463 830 IKEEELEELALEL-KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEEleeQKLKDELESKEEKEKEEKKELEEESQK 908
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 672056291 931 HSLLSDQMLELKRSQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERRE 983
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1453-2082 |
6.39e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 6.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1453 KQKLQELTRNLRERVTTLAKQKDAPSQGEEEEE--LKAVMHDLQITCGEMQRK----VELLRYESEKLQEENSILRNeit 1526
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKfyLRQSVIDLQTKLQEMQMErdamADIRRRESQSQEDLRNQLQN--- 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1527 TLNEEDSISNLKLEELNGSQEElwqkIETIEQEKASIQKMVEKLKKQVSDLKlknqqlDSENKELSQKNSQNKEELKTLN 1606
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQ----IEQLRKMMLSHEGVLQEIRSILVDFE------EASGKKIYEHDSMSTMHFRSLG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1607 QRLAEMLcqkedpgtctsekweqenESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENlllKDELERLKQLHRC 1686
Cdd:pfam15921 220 SAISKIL------------------RELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQH---QDRIEQLISEHEV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1687 pDLSDFQQKMCSILSYNENLLKEKEVLSEELKScadklaESSLLEHRIATIkeereawEEQSQDLKSQLalsQEKVQNLE 1766
Cdd:pfam15921 279 -EITGLTEKASSARSQANSIQSQLEIIQEQARN------QNSMYMRQLSDL-------ESTVSQLRSEL---REAKRMYE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1767 DILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAIDKdwVSETATHLSGLQGQQKRLsWNK-------LDHLM 1839
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD--LHKREKELSLEKEQNKRL-WDRdtgnsitIDHLR 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1840 SEEPELlCQESKRLQTVVQNTQADLTHSREkiRQLESnlLPTKHQKQLNQSCTVKPIEQEKLALKRECEQSRKER---SP 1916
Cdd:pfam15921 419 RELDDR-NMEVQRLEALLKAMKSECQGQME--RQMAA--IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKmtlES 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1917 TSRKVSQMS-SLERELETIHLENEGLKKKQVRLDEKLMEMQPLRSAGTHSPSSHWDLQLLQQQACpmvprEQFLQLQQQL 1995
Cdd:pfam15921 494 SERTVSDLTaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMA-----EKDKVIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1996 LQAEKRSQHLQEEldNRTSEPNTVQGSQehLVNLMEERMIEVeQKLKLVKRLLQEKVNQLkeqlcknsktDAMVKDLYVE 2075
Cdd:pfam15921 569 QQIENMTQLVGQH--GRTAGAMQVEKAQ--LEKEINDRRLEL-QEFKILKDKKDAKIREL----------EARVSDLELE 633
|
....*..
gi 672056291 2076 NAQLLKA 2082
Cdd:pfam15921 634 KVKLVNA 640
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
396-1096 |
7.34e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 7.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 396 LKSLMASEVDDHHAAIERRNEYN--LRKLDEEYKERIAALKNEL-------RQEREQILQQVGKQRVELEQEIEKAKTEE 466
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNqlLRTLDDQWKEKRDELNGELsaadaavAKDRSELEALEDQHGAFLDADIETAAADQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 467 NYIrDRLALSLKENNRLENELLENAEKL-AEYENLTSKLQRSLENVLAEKFGDLDPSSAEFFLQeerLAQMRNEYEQQCR 545
Cdd:pfam12128 347 EQL-PSWQSELENLEERLKALTGKHQDVtAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQ---LAVAEDDLQALES 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 546 LLQDQVDELQSELEEyQAQGRVLRLpcqnalsEELDGHGDGIEQDQEpgsgecNPLNMSIEAELVIEQLKEQHHRDLCHL 625
Cdd:pfam12128 423 ELREQLEAGKLEFNE-EEYRLKSRL-------GELKLRLNQATATPE------LLLQLENFDERIERAREEQEAANAEVE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 626 RLELEDKV--RHYEKQLDHTRVaCEKEQVAMKQKYEQGMRTLEKQISELqseIADLQGQAAVLKEAHHKASCRHEEEKKQ 703
Cdd:pfam12128 489 RLQSELRQarKRRDQASEALRQ-ASRRLEERQSALDELELQLFPQAGTL---LHFLRKEAPDWEQSIGKVISPELLHRTD 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 704 LQMVFDEEKT--------------QLQEELRLEHEQELKARLQQAEESFRQEREGLAQAaawtEEKARSLTRDLEQSHQE 769
Cdd:pfam12128 565 LDPEVWDGSVggelnlygvkldlkRIDVPEWAASEEELRERLDKAEEALQSAREKQAAA----EEQLVQANGELEKASRE 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 770 QLLSlmeKHALEKEELR-KELSEYHQRE---LQEGREEMETECNRRVSQIEAQfqadcekvterceqtLQSLEGRYRQEL 845
Cdd:pfam12128 641 ETFA---RTALKNARLDlRRLFDEKQSEkdkKNKALAERKDSANERLNSLEAQ---------------LKQLDKKHQAWL 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 846 KDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTH-------KERLAILSMEREQLLQ 918
Cdd:pfam12128 703 EEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDlaslgvdPDVIAKLKREIRTLER 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 919 DLKDLQntSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQlgSQQLARLQVEHEQERREMAGKIAALESAHrvs 998
Cdd:pfam12128 783 KIERIA--VRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISEL--QQQLARLIADTKLRRAKLEMERKASEKQQ--- 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 999 cERADQEKAEMSAEIRRLqSTVKDLQQAtsllvlqggcratagEEAEGNGALSlLQQGEQLLEENGDVLISLQKAHERAV 1078
Cdd:pfam12128 856 -VRLSENLRGLRCEMSKL-ATLKEDANS---------------EQAQGSIGER-LAQLEDLKLKRDYLSESVKKYVEHFK 917
|
730
....*....|....*....
gi 672056291 1079 KE-NAKMATEISRLQQRLK 1096
Cdd:pfam12128 918 NViADHSGSGLAETWESLR 936
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1414-1952 |
7.60e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.79 E-value: 7.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1414 HQEKPSVQNRVILEesAALLGLQGTHLQHEATIAELELEKQKLQELTR--NLRERVTTLAKQKDAPSQGE------EEEE 1485
Cdd:pfam05483 103 QKENKLQENRKIIE--AQRKAIQELQFENEKVSLKLEEEIQENKDLIKenNATRHLCNLLKETCARSAEKtkkyeyEREE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1486 LKAVMHDLQITCGEMqrkveLLRYESEKLQEENSILRNEITTLNEEDSISNLKLE---ELNGSQEE---LWQKIETIEQE 1559
Cdd:pfam05483 181 TRQVYMDLNNNIEKM-----ILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEykkEINDKEKQvslLLIQITEKENK 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1560 KASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKE------DPGTCTSEKWEQENES 1633
Cdd:pfam05483 256 MKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKaleedlQIATKTICQLTEEKEA 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1634 LKEELDRYKVQTSTLVSSLEAELSEVKLqthiveqenlLLKDELERLKQLHRCPDLSDFQ-QKMCSILSYNENLLKEKEV 1712
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEE----------LLRTEQQRLEKNEDQLKIITMElQKKSSELEEMTKFKNNKEV 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1713 LSEELKSCadkLAESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQ--VTRQEK 1790
Cdd:pfam05483 406 ELEELKKI---LAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEdlKTELEK 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1791 EALKQEVMSLHLQLQNAIDKDWVSETATHLSGLQGQQKRLSWNKldhlmsEEPELLCQESKRLQTVVQNTQADLTHSREK 1870
Cdd:pfam05483 483 EKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCK------KQEERMLKQIENLEEKEMNLRDELESVREE 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1871 IRQLESNL---LPTKHQKQLNQSCTVKPIEQEKLALKRECEQSRKersptsrkvsQMSSLERELETIHLENEGLKKKQVR 1947
Cdd:pfam05483 557 FIQKGDEVkckLDKSEENARSIEYEVLKKEKQMKILENKCNNLKK----------QIENKNKNIEELHQENKALKKKGSA 626
|
....*
gi 672056291 1948 LDEKL 1952
Cdd:pfam05483 627 ENKQL 631
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
358-883 |
9.97e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 9.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 358 HQAALASFKAEIRHLLERVDQVvrEKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYN--LRKLDEEYKERIAALKn 435
Cdd:COG4913 307 LEAELERLEARLDALREELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEalLAALGLPLPASAEEFA- 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 436 ELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRLAlslkennRLENEL--LENAEKlaeyeNLTSKLQRSLEnVLA 513
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR-------ELEAEIasLERRKS-----NIPARLLALRD-ALA 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 514 EKFGdLDPSSAEFFLQeerLAQMRNEYE------------QQCRLL--QDQVDELQSELEEYQAQGRVlrlpcqnalsee 579
Cdd:COG4913 451 EALG-LDEAELPFVGE---LIEVRPEEErwrgaiervlggFALTLLvpPEHYAAALRWVNRLHLRGRL------------ 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 580 ldgHGDGIEQDQEPGSGECNPLNmSIEAELVIEQ------LKEQHHRDLCHLRLELEDKVRHYEK------QLDHTRVAC 647
Cdd:COG4913 515 ---VYERVRTGLPDPERPRLDPD-SLAGKLDFKPhpfrawLEAELGRRFDYVCVDSPEELRRHPRaitragQVKGNGTRH 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 648 EKE-QVAMKQKY------EQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKT-QLQEEL 719
Cdd:COG4913 591 EKDdRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVaSAEREI 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 720 -RLEHE-----------QELKARLQQAEESF---RQEREGLAQAAAWTEEKARSLTRDLEQShQEQLLSLMEKHALE--- 781
Cdd:COG4913 671 aELEAElerldassddlAALEEQLEELEAELeelEEELDELKGEIGRLEKELEQAEEELDEL-QDRLEAAEDLARLElra 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 782 ------KEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGR--YRQELKDLLDQHL 853
Cdd:COG4913 750 lleerfAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLpeYLALLDRLEEDGL 829
|
570 580 590
....*....|....*....|....*....|....*.
gi 672056291 854 EE-RSQW-----EFEKDELTQECTEAQEQLEEVLQR 883
Cdd:COG4913 830 PEyEERFkellnENSIEFVADLLSKLRRAIREIKER 865
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1510-2110 |
1.25e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.20 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1510 ESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENK 1589
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKS 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1590 ELSQKNSQnKEELKTLNQRLAEMLCQKEDPgtctsekwEQENESLKEELDRYKVQTSTLVSSLEAELSE-VKLQTHIVEQ 1668
Cdd:PRK01156 240 ALNELSSL-EDMKNRYESEIKTAESDLSME--------LEKNNYYKELEERHMKIINDPVYKNRNYINDyFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1669 ENLL--LKDELERLKQLHRcpDLSDFQQkmcsilSYNENLLKEKEVlsEELKSCADKLAESSL--------LEHRIATIK 1738
Cdd:PRK01156 311 KQILsnIDAEINKYHAIIK--KLSVLQK------DYNDYIKKKSRY--DDLNNQILELEGYEMdynsylksIESLKKKIE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1739 EEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAIDKDWVSETAT 1818
Cdd:PRK01156 381 EYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGT 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1819 HLSGlqgqqkrlswNKLDHLMSEEPEllcqESKRLQTVVQNTQADLTHSREKIRQLESnllptkhqkqlnqsctvkpieq 1898
Cdd:PRK01156 461 TLGE----------EKSNHIINHYNE----KKSRLEEKIREIEIEVKDIDEKIVDLKK---------------------- 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1899 eklaLKRECEQSRKERSPTSRKvsQMSSLERELETIHLENEGLKKKQVRLDEKLMEMQPLRSAGTHSPSSHWDLQLLQQQ 1978
Cdd:PRK01156 505 ----RKEYLESEEINKSINEYN--KIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVIS 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1979 ACPM-VPREQFLQLQQQLLQAEKRSQHLQEELDNRTSEPNTVQGSQEHLVNLMEERMIEVEQKlKLVKRLLQEKVNQLKE 2057
Cdd:PRK01156 579 LIDIeTNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQEN-KILIEKLRGKIDNYKK 657
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 672056291 2058 QLcknSKTDAMVKDLYVENAQLLKALEMTEQRQKTAEKKNFLLEEKIASLSTI 2110
Cdd:PRK01156 658 QI---AEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEIL 707
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1467-1764 |
1.81e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.82 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1467 VTTLAKQKDAPSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQ 1546
Cdd:PLN02939 33 VSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAID 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1547 EELWQKIETIEQEkASIQ-----KMVEKLKKQVSDL-KLKNQQLDSENKELSQKNSQNKEeLKTLNQRLAE-----MLCQ 1615
Cdd:PLN02939 113 NEQQTNSKDGEQL-SDFQledlvGMIQNAEKNILLLnQARLQALEDLEKILTEKEALQGK-INILEMRLSEtdariKLAA 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1616 KEDPGTctsEKWEQENESLKEELDRYKVQTSTLVSSLEAELSEVKLqthiveqENLLLKDELERLKQlhrcpDLSDFQQK 1695
Cdd:PLN02939 191 QEKIHV---EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKE-------ENMLLKDDIQFLKA-----ELIEVAET 255
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 672056291 1696 MCSILSynenLLKEKEVLSEELKSCADKLAESSLLEHRIATIKEerEAWEEQSQDLKSQLALSQEKVQN 1764
Cdd:PLN02939 256 EERVFK----LEKERSLLDASLRELESKFIVAQEDVSKLSPLQY--DCWWEKVENLQDLLDRATNQVEK 318
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
827-1018 |
2.48e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 827 TERCEQTLQSLEGRYRQ-----ELKDLLDQHLEERSQW--EFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLE 899
Cdd:COG4913 247 AREQIELLEPIRELAERyaaarERLAELEYLRAALRLWfaQRRLELLEAELEELRAELARLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 900 KTHKERLAILSMEREQLLQDLKDLQNTSERqhsllsdqmlelkrsQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQ 979
Cdd:COG4913 327 ELEAQIRGNGGDRLEQLEREIERLERELEE---------------RERRRARLEALLAALGLPLPASAEEFAALRAEAAA 391
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 672056291 980 ERREMAGKIAALESA---HRVSCERADQEKAEMSAEIRRLQS 1018
Cdd:COG4913 392 LLEALEEELEALEEAlaeAEAALRDLRRELRELEAEIASLER 433
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
626-1365 |
2.60e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 626 RLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISEL--------QSEIADLQGQAAVLKEAHHKASCRH 697
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIarkaedarKAEEARKAEDAKKAEAARKAEEVRK 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 698 EEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEK 777
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ 1269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 778 HALEKEELRKELSEYHQRELQEGREEMETECNRRVsqieaqfqadcEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERS 857
Cdd:PTZ00121 1270 AAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA-----------DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 858 QWEFEKDELTQ-ECTEAQEQLEEVLQREKATALARSQEQETLEKTHKErlailsMEREQLLQDLKDLQNTSERQHSLLSD 936
Cdd:PTZ00121 1339 EEAKKAAEAAKaEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK------AEEKKKADEAKKKAEEDKKKADELKK 1412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 937 QMLELKRSQERELREPEhvlcqTGVSEQLGSQQLARLQVEHEQERREMAGKIaalESAHRVSCERADQEKAEMSAEIRRL 1016
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEE-----KKKADEAKKKAEEAKKADEAKKKAEEAKKA---EEAKKKAEEAKKADEAKKKAEEAKK 1484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1017 QSTVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQGEQLLE-ENGDVLISLQKAHERAVKENAKMATEISRLQQRL 1095
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1096 KKLEPGSAissclEERMTEISGSSREHAEPVMKRGTATKHFLSDPGDHEAQGLGSTGTSSVQRQECRTEESEASLECFSE 1175
Cdd:PTZ00121 1565 KAEEAKKA-----EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1176 LENSEDTRteswdlKSQIIQLQEQLTVLRAD--CDRASERKR---DLLFDISVLKKKLKMLERLPEASSKYKVLYEDAAR 1250
Cdd:PTZ00121 1640 KKEAEEKK------KAEELKKAEEENKIKAAeeAKKAEEDKKkaeEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1251 ENAcLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLE 1330
Cdd:PTZ00121 1714 EKK-KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 672056291 1331 RAALQ-------GDSYSLWEGPSENLEVTSDEKMLELHQTEE 1365
Cdd:PTZ00121 1793 RMEVDkkikdifDNFANIIEGGKEGNLVINDSKEMEDSAIKE 1834
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
682-1317 |
2.92e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 682 QAAVLKEAHHKASCRHEEEKKQLQMVFDEEKT--------QLQEELRLEHEQELKARLQQAEES----FRQEREGLAQAA 749
Cdd:COG5022 794 RLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTikrekklrETEEVEFSLKAEVLIQKFGRSLKAkkrfSLLKKETIYLQS 873
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 750 AWTEEKARSLTRDLEQ-----SHQEQLLSLMEKHALEkeeLRKELSEYHQRELQEGREEMeTECNRRVSQIEAQFQADCE 824
Cdd:COG5022 874 AQRVELAERQLQELKIdvksiSSLKLVNLELESEIIE---LKKSLSSDLIENLEFKTELI-ARLKKLLNNIDLEEGPSIE 949
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 825 KVTERCEQTLQSLEGRYRQ---ELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKT 901
Cdd:COG5022 950 YVKLPELNKLHEVESKLKEtseEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQ 1029
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 902 HKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREpEHVLCQTGVSEQLgsqqLARLQVEHEQER 981
Cdd:COG5022 1030 SASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLD-DKQLYQLESTENL----LKTINVKDLEVT 1104
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 982 REMAGKIAALESAHRVSCERADqEKAEMSAEIRRLQSTVKDLQQATS--LLVLQGGCRATAGEEAEGNGALSLLQQGE-- 1057
Cdd:COG5022 1105 NRNLVKPANVLQFIVAQMIKLN-LLQEISKFLSQLVNTLEPVFQKLSvlQLELDGLFWEANLEALPSPPPFAALSEKRly 1183
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1058 --QLLEENGDVLISLQKAHERAVKEnakMATEISRLQQRLKKLEPGSAISSCLEERMTEISGSSREHAEPVMKRGTATKH 1135
Cdd:COG5022 1184 qsALYDEKSKLSSSEVNDLKNELIA---LFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEK 1260
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1136 FLSDPGDHEAQGLGSTGTSSVQRQECRTEESEASLECFSEL--------------ENSEDTRTESWDLKSQIIQLQEQLT 1201
Cdd:COG5022 1261 LLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALrtkasslrwksateVNYNSEELDDWCREFEISDVDEELE 1340
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1202 VLRadcdRASERKRDLLFDISVLKKKLKMLERL-PEASSKYKVLYEDAARENACLQEELRLMEMRYADS-LDSNKELTAE 1279
Cdd:COG5022 1341 ELI----QAVKVLQLLKDDLNKLDELLDACYSLnPAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQeLQLSLEGKDE 1416
|
650 660 670
....*....|....*....|....*....|....*...
gi 672056291 1280 VYRLQDEMKKMEEvtgTFLSLENSYDEVKLENEKLSAL 1317
Cdd:COG5022 1417 TEVHLSEIFSEEK---SLISLDRNSIYKEEVLSSLSAL 1451
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
528-777 |
3.21e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 528 LQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQ-NALSEELDghgdgieqdqepgsgecnplnmSIE 606
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEaKLLLQQLS----------------------ELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 607 AELVieQLKEQhhrdlchlRLELEDKVRHYEKQLDhtrvacEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQgqaAVL 686
Cdd:COG3206 226 SQLA--EARAE--------LAEAEARLAALRAQLG------SGPDALPELLQSPVIQQLRAQLAELEAELAELS---ARY 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 687 KEAHHKAScRHEEEKKQLQMVFDEEKTQLQEELRLEhEQELKARLQQAEESFRQEREGLAQAAAwTEEKARSLTRDLEqS 766
Cdd:COG3206 287 TPNHPDVI-ALRAQIAALRAQLQQEAQRILASLEAE-LEALQAREASLQAQLAQLEARLAELPE-LEAELRRLEREVE-V 362
|
250
....*....|.
gi 672056291 767 HQEQLLSLMEK 777
Cdd:COG3206 363 ARELYESLLQR 373
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
381-855 |
3.22e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 381 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYnlrkldEEYKERIAALKNELRQEREQILQQvgKQRVELEQEIE 460
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL------EEELEELEAELEELREELEKLEKL--LQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 461 KAKTEENYIRDRLalslkenNRLENELLENAEKLAEYENLTSKLQRsLENVLAEKFGDLDPSSAEfflQEERLAQMRNEY 540
Cdd:COG4717 136 ALEAELAELPERL-------EELEERLEELRELEEELEELEAELAE-LQEELEELLEQLSLATEE---ELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 541 EQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELDGHGD-------GIEQDQEPGSGECNPLNMSIEAELVIEQ 613
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaaALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 614 LkeqhhrdLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAmKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKA 693
Cdd:COG4717 285 L-------LALLFLLLAREKASLGKEAEELQALPALEELE-EEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 694 ScrhEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEEsFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLS 773
Cdd:COG4717 357 E---ELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 774 LMEKHALEKEELRKELSEYHQR--ELQEGREEMETEcnRRVSQIEAQFqadcekvtERCEQTLQSLEGRYR--QELKDLL 849
Cdd:COG4717 433 ELEELEEELEELEEELEELREElaELEAELEQLEED--GELAELLQEL--------EELKAELRELAEEWAalKLALELL 502
|
....*.
gi 672056291 850 DQHLEE 855
Cdd:COG4717 503 EEAREE 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1400-1610 |
3.61e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1400 KAHEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQeltRNLRERVTTLAKQKDAPSQ 1479
Cdd:COG4942 39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR---AELEAQKEELAELLRALYR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1480 GEEEEELKAVMHdlQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQE 1559
Cdd:COG4942 116 LGRQPPLALLLS--PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEAL 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 672056291 1560 KASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLA 1610
Cdd:COG4942 194 KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
735-951 |
4.18e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 735 EESFRQEREGLAQAAAWTEEKARSLTRDLEQShQEQLLSLMEKHAL-----EKEELRKELSEYhQRELQEGREEMEtECN 809
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEA-EAALEEFRQKNGLvdlseEAKLLLQQLSEL-ESQLAEARAELA-EAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 810 RRVSQIEAQFQADCEKVTE--------RCEQTLQSLEGRYRQELKDLLDQH-----LEErsqwefEKDELTQECTEAQEQ 876
Cdd:COG3206 240 ARLAALRAQLGSGPDALPEllqspviqQLRAQLAELEAELAELSARYTPNHpdviaLRA------QIAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672056291 877 LEEVLQREKATALARSQEQETLEKTHKERLAILSmEREQLLQDLKDLQNTSERQHSLLsdqmleLKRSQERELRE 951
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELP-ELEAELRRLEREVEVARELYESL------LQRLEEARLAE 381
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
419-1138 |
4.68e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 419 LRKLDEE----------YKERIAALKNELRQEREQILQQvgkQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELl 488
Cdd:pfam15921 226 LRELDTEisylkgrifpVEDQLEALKSESQNKIELLLQQ---HQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 489 ENAEKLAEYENltSKLQRSLENVlaekfgdldpssaefflqEERLAQMRNEYEQQCRLLQDQVDELQSELeeyqaqgrVL 568
Cdd:pfam15921 302 EIIQEQARNQN--SMYMRQLSDL------------------ESTVSQLRSELREAKRMYEDKIEELEKQL--------VL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 569 rlpcqnALSEELDGHGDGIEQDQEPGsgecnplNMSIEAELVIEQLkeqhHRDLCHLRLELEDKVRHYEKQLDHTrvace 648
Cdd:pfam15921 354 ------ANSELTEARTERDQFSQESG-------NLDDQLQKLLADL----HKREKELSLEKEQNKRLWDRDTGNS----- 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 649 keqvamkqkyeqgmRTLEKQISELQSEIADLQGQAAVLKEAhhKASCRHEEEKkqlQMVFDEEKTQlqeelRLEHEQELK 728
Cdd:pfam15921 412 --------------ITIDHLRRELDDRNMEVQRLEALLKAM--KSECQGQMER---QMAAIQGKNE-----SLEKVSSLT 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 729 ARLQQAEESFRQEREGLAQAAAWTEEKARSLTrDLEQSHQEQLLSLMEKHAlEKEELRKELsEYHQRELQEGREE----- 803
Cdd:pfam15921 468 AQLESTKEMLRKVVEELTAKKMTLESSERTVS-DLTASLQEKERAIEATNA-EITKLRSRV-DLKLQELQHLKNEgdhlr 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 804 -METECNRRVSQIeaqfqADCEKVTERCEQTLQSlegryrqeLKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEV-L 881
Cdd:pfam15921 545 nVQTECEALKLQM-----AEKDKVIEILRQQIEN--------MTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFkI 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 882 QREKATALARSQEQET----LEKTH-----KERLAI---LSMEREQLLQDLKdlqnTSERQHSLLSDQMLELKRSQEREL 949
Cdd:pfam15921 612 LKDKKDAKIRELEARVsdleLEKVKlvnagSERLRAvkdIKQERDQLLNEVK----TSRNELNSLSEDYEVLKRNFRNKS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 950 REPEhvlcqtgVSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVSCERADQEKAEmSAEIRRLQSTVKDLQQATSL 1029
Cdd:pfam15921 688 EEME-------TTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAK-RGQIDALQSKIQFLEEAMTN 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1030 L------------VLQGGCRATAGEEAEGNGALSLLQQGEQLLEE---NGDVLI---SLQKAHERAVKENAKMATEISRL 1091
Cdd:pfam15921 760 AnkekhflkeeknKLSQELSTVATEKNKMAGELEVLRSQERRLKEkvaNMEVALdkaSLQFAECQDIIQRQEQESVRLKL 839
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 672056291 1092 QQRL--KKLE-PGSAISSCLEERMTEISGSSREHAEpvMKRGTATKHFLS 1138
Cdd:pfam15921 840 QHTLdvKELQgPGYTSNSSMKPRLLQPASFTRTHSN--VPSSQSTASFLS 887
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
359-560 |
5.06e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLdeeyKERIAALKNELR 438
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA-ELAEL----EKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 439 QEREQILQQVGKQ-----------------------RVELEQEIEKAKTEEnyiRDRLALSLKENNRLENELLENAEKLA 495
Cdd:COG4942 101 AQKEELAELLRALyrlgrqpplalllspedfldavrRLQYLKYLAPARREQ---AEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672056291 496 EYENLTSKLQRSLENVLAEKFGDLDPSSAEFFLQEERLAQMRNEYEQqcrlLQDQVDELQSELEE 560
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE----LEALIARLEAEAAA 238
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
656-1095 |
5.26e-04 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 44.90 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 656 QKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAE 735
Cdd:COG5278 79 EPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEIRARL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 736 ESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQI 815
Cdd:COG5278 159 LLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAAL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 816 EAQFQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQ 895
Cdd:COG5278 239 ALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAA 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 896 ETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQLGSQQLARLQV 975
Cdd:COG5278 319 AAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAA 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 976 EHEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQ 1055
Cdd:COG5278 399 AAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALA 478
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 672056291 1056 GEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRL 1095
Cdd:COG5278 479 AAAAALAEAEAAAALAAAAALSLALALAALLLAAAEAALA 518
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
725-929 |
5.38e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 725 QELKARLQQAEESFRQEREGLAQaaawTEEKARSLTRDLEQSHQEQLLSLMEKHALEKE--ELRKELSEYHQR--ELQEG 800
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAA----LKKEEKALLKQLAALERRIAALARRIRALEQElaALEAELAELEKEiaELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 801 REEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLE-----GRYRQELKDLLDQHLEERSQWEFEKDELTQEcTEAQE 875
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRrlqylKYLAPARREQAEELRADLAELAALRAELEAE-RAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 672056291 876 QLEEVLQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSER 929
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
654-1094 |
5.91e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 654 MKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKkQLQMVFDEEKTQLQEELRLEHEQEL------ 727
Cdd:TIGR00618 213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ-LLKQLRARIEELRAQEAVLEETQERinrark 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 728 KARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQ--SHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEM- 804
Cdd:TIGR00618 292 AAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKraAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIs 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 805 --ETECNRRVSQIEAQFQADCEKvtercEQTLQSLEGRYRQELKDLLDQHLEERSqwefEKDELTQecTEAQEQLEEVLQ 882
Cdd:TIGR00618 372 cqQHTLTQHIHTLQQQKTTLTQK-----LQSLCKELDILQREQATIDTRTSAFRD----LQGQLAH--AKKQQELQQRYA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 883 REKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQ---ERELREPEHVLCQT 959
Cdd:TIGR00618 441 ELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplCGSCIHPNPARQDI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 960 GVSEQLGSQQLARLQ--VEHEQERREMAGK-IAALESAHRVS--CERADQEKAEMSAEIRRLQSTVKDLQQATSLLVLQG 1034
Cdd:TIGR00618 521 DNPGPLTRRMQRGEQtyAQLETSEEDVYHQlTSERKQRASLKeqMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT 600
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 672056291 1035 gcraTAGEEAEGNGALSLLQQGEQLLEENGDVLISL---QKAHERAVKENAKMATEISRLQQR 1094
Cdd:TIGR00618 601 ----EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLhlqQCSQELALKLTALHALQLTLTQER 659
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
466-1015 |
5.95e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 466 ENYIRDRLALSLKENNRLENELLENAEKlaEYENLTSKLQRSlenvlaeKFGDLDPSSAEFFLQEERlAQMRNEYEQQCR 545
Cdd:pfam12128 224 EHWIRDIQAIAGIMKIRPEFTKLQQEFN--TLESAELRLSHL-------HFGYKSDETLIASRQEER-QETSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 546 LLQDQVDELQSELEE---------YQAQGRVLRLPCQNALSEELDGHGDGIEQDQEPG-SGECNPLNMSIEAEL-VIEQL 614
Cdd:pfam12128 294 TLDDQWKEKRDELNGelsaadaavAKDRSELEALEDQHGAFLDADIETAAADQEQLPSwQSELENLEERLKALTgKHQDV 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 615 KEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKqkyeqgmrtlekqiselqseiADLQGQAAVLKEAHHKAS 694
Cdd:pfam12128 374 TAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAE---------------------DDLQALESELREQLEAGK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 695 CRHEEEKKQLQMVFDEEKTQL-------QEELRLEHEQELKARLQQAEESFRQEREGL----AQAAAWTEEKARSLTR-- 761
Cdd:pfam12128 433 LEFNEEEYRLKSRLGELKLRLnqatatpELLLQLENFDERIERAREEQEAANAEVERLqselRQARKRRDQASEALRQas 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 762 ----DLEQSHQEQLLSLMEKHALEKEELRKELSEYHQ-------RELQeGREEMETECNR--------------RVSQIE 816
Cdd:pfam12128 513 rrleERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvisPELL-HRTDLDPEVWDgsvggelnlygvklDLKRID 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 817 AQFQADCEKVTER----CEQTLQSLEGRYRQELKDL--LDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKataLA 890
Cdd:pfam12128 592 VPEWAASEEELRErldkAEEALQSAREKQAAAEEQLvqANGELEKASREETFARTALKNARLDLRRLFDEKQSEK---DK 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 891 RSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQlgSQQL 970
Cdd:pfam12128 669 KNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARR--SGAK 746
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 672056291 971 ARLQVEHEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRR 1015
Cdd:pfam12128 747 AELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRR 791
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
651-888 |
6.13e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 651 QVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQmVFDEEKTQLQEELRleheqELKAR 730
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELA-----ELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 731 LQQAEESFRQEREGLAQ--AAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEY--HQRELQEGREEMET 806
Cdd:COG4942 92 IAELRAELEAQKEELAEllRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELraDLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 807 ECNRRVSQIEAQfqadcekvtERCEQTLQSLegryRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKA 886
Cdd:COG4942 172 ERAELEALLAEL---------EEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
..
gi 672056291 887 TA 888
Cdd:COG4942 239 AA 240
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1499-1770 |
7.18e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.04 E-value: 7.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1499 EMQRKVELLRYeSEKLQEENSILRNEITTLneEDSISNLkleelngsQEELWQKIETIEQEKASIQKMVEKLKKQVSDL- 1577
Cdd:TIGR01612 1088 EIKEKLKHYNF-DDFGKEENIKYADEINKI--KDDIKNL--------DQKIDHHIKALEEIKKKSENYIDEIKAQINDLe 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1578 KLKNQQLDSENKELSQKNSQN-----------KEELKTLNQRLAEMLCQK---EDPGTCTSEKWEQENESLKEELDRYKV 1643
Cdd:TIGR01612 1157 DVADKAISNDDPEEIEKKIENivtkidkkkniYDEIKKLLNEIAEIEKDKtslEEVKGINLSYGKNLGKLFLEKIDEEKK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1644 QTSTLVSSLEA---ELSEVKLQTHIVEQENLLLKDELERLKQLhrcpDLSDFQQKMCSILSYNENllkekEVLSEeLKSC 1720
Cdd:TIGR01612 1237 KSEHMIKAMEAyieDLDEIKEKSPEIENEMGIEMDIKAEMETF----NISHDDDKDHHIISKKHD-----ENISD-IREK 1306
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 672056291 1721 ADKLAESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILK 1770
Cdd:TIGR01612 1307 SLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILK 1356
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1514-2114 |
8.33e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1514 LQEENSILRNEITTLNEEDSISNLKLEELNgsqeelwqkietieqekasiqkmvEKLKKQVSDLKLKNQQ---LDSENKE 1590
Cdd:TIGR04523 73 SNNKIKILEQQIKDLNDKLKKNKDKINKLN------------------------SDLSKINSEIKNDKEQknkLEVELNK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1591 LSQKNSQNKEELKTLNQRLaemlcqkedpgtctsEKWEQENESLKEELDRYKVQTSTLvssleaELSEVKLQTHIVEQEN 1670
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEI---------------KKKEKELEKLNNKYNDLKKQKEEL------ENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1671 LLLKDELERLKQLHRCPDLSDFQQKMCSILSYNENLLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAWEEQSQD 1750
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE---KTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1751 LKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEA-----LKQEVMSLHLQLQNAidKDWVSETATHLSGLQG 1825
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEI--QNQISQNNKIISQLNE 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1826 QQKRLSwNKLDHLMSEEPEL---LCQESKRLQTVVQNTQADLTHSRE---KIRQLESNLLPTKHQKQLNQScTVKPIEQE 1899
Cdd:TIGR04523 343 QISQLK-KELTNSESENSEKqreLEEKQNEIEKLKKENQSYKQEIKNlesQINDLESKIQNQEKLNQQKDE-QIKKLQQE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1900 KLALKRECEQSRKERSPTSrkvSQMSSLERELETIHLENEGLKKKQVRLDEKLMEMqpLRSAGTHSPSSHWDLQLLQQ-- 1977
Cdd:TIGR04523 421 KELLEKEIERLKETIIKNN---SEIKDLTNQDSVKELIIKNLDNTRESLETQLKVL--SRSINKIKQNLEQKQKELKSke 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1978 QACPMVPREQFLQLQQQLLQAEKRSQHL--QEELDNRTSEPNTVQGSQEHLVNLMEERMieVEQKLKLVKRLLQEKVNQL 2055
Cdd:TIGR04523 496 KELKKLNEEKKELEEKVKDLTKKISSLKekIEKLESEKKEKESKISDLEDELNKDDFEL--KKENLEKEIDEKNKEIEEL 573
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 672056291 2056 KEQ----LCKNSKTDAMVKDLYVENAQLLKALEMTEQRQKTAEKKNFLLEEKIASLSTIVRNL 2114
Cdd:TIGR04523 574 KQTqkslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1481-1678 |
8.69e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 8.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1481 EEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEK 1560
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1561 ASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENESLKEELDR 1640
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLK 190
|
170 180 190
....*....|....*....|....*....|....*...
gi 672056291 1641 YKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELE 1678
Cdd:COG4372 191 EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLE 228
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
380-964 |
1.05e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 380 VREKEKLR--SDLDKAEKLKSLMASEVDDHHA--AIERRNEYNLRKLDE----EYKERIAALKNELRQEREQILQQVGKQ 451
Cdd:PTZ00121 1211 ERKAEEARkaEDAKKAEAVKKAEEAKKDAEEAkkAEEERNNEEIRKFEEarmaHFARRQAAIKAEEARKADELKKAEEKK 1290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 452 RV-ELEQEIEKAKTEENYIR---DRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENVLAEKFGDLDPSSAEFF 527
Cdd:PTZ00121 1291 KAdEAKKAEEKKKADEAKKKaeeAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 528 LQEERLAQMRNEYEQQCRLLQdQVDELQSELEEYQAQGRVLRLpcqnalSEELDGHGDGIEQDQEPGSgecnplnmsiEA 607
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKK-KADEAKKKAEEDKKKADELKK------AAAAKKKADEAKKKAEEKK----------KA 1433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 608 ELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACE-KEQVAMKQKYEQGMRTLE--KQISELQSEIADLQGQAA 684
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEaKKKAEEAKKADEAKKKAEeaKKKADEAKKAAEAKKKAD 1513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 685 VLKEAHHKascRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLE 764
Cdd:PTZ00121 1514 EAKKAEEA---KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 765 QSHQEQLLSLMEKHALEK-EELRKELSEYHQRElQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYRQ 843
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKaEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 844 ELKDLLDQHlEERSQWEFEKDELTQECTEAQEQLE-EVLQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKD 922
Cdd:PTZ00121 1670 AEEDKKKAE-EAKKAEEDEKKAAEALKKEAEEAKKaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 672056291 923 LQNTSERQHSLLSDQMLELKRSQerELREPEHVLCQTGVSEQ 964
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAE--EIRKEKEAVIEEELDEE 1788
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1442-1805 |
1.26e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1442 HEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEE-EELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSI 1520
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREElETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1521 LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNS---- 1596
Cdd:PRK02224 291 LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAeles 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1597 ----------QNKEELKTLNQRLAEMLCQKEDPGTcTSEKWEQENESLKEELDRYKVQtstlVSSLEAELSEVklqthiv 1666
Cdd:PRK02224 371 eleeareaveDRREEIEELEEEIEELRERFGDAPV-DLGNAEDFLEELREERDELRER----EAELEATLRTA------- 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1667 eQENLllkDELERLKQLHRCPD-------------LSDFQQKMCSIlsynENLLKEKEVLSEELKSCADKLAESSLLEHR 1733
Cdd:PRK02224 439 -RERV---EEAEALLEAGKCPEcgqpvegsphvetIEEDRERVEEL----EAELEDLEEEVEEVEERLERAEDLVEAEDR 510
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 672056291 1734 IATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQ 1805
Cdd:PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA 582
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
696-844 |
1.28e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 43.70 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 696 RHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQ--------SH 767
Cdd:PRK00106 50 KAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENlsskektlES 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 768 QEQLLSLMEKHALEKEELRKELSEYHQRELQ--------EGREEMETECNRRVSQIEAQFQADCEK-VTERCE------- 831
Cdd:PRK00106 130 KEQSLTDKSKHIDEREEQVEKLEEQKKAELErvaalsqaEAREIILAETENKLTHEIATRIREAEReVKDRSDkmakdll 209
|
170
....*....|....
gi 672056291 832 -QTLQSLEGRYRQE 844
Cdd:PRK00106 210 aQAMQRLAGEYVTE 223
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
404-770 |
1.71e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 404 VDDHHAAIERRNEYNLRKLDEEykeriaalknELRQEREQILQQVGKQRveleqEIEKAKTEENYIRDRLALSLKENNRL 483
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQE----------RLRQEKEEKAREVERRR-----KLEEAEKARQAEMDRQAAIYAEQERM 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 484 ENELLENAEKLAEYENltsklQRSLENVLAEKFG-DLDPSSAEFFLQEERlaQMRNEYEQQ----CRLLQDQVDELQSEL 558
Cdd:pfam17380 343 AMERERELERIRQEER-----KRELERIRQEEIAmEISRMRELERLQMER--QQKNERVRQeleaARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 559 EEYQAQGRVLRLPCQNALSEELdghgdgieqdqepgsgecnplnmsieaelviEQLKEQHHRDLCHLRLELEDK------ 632
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQREV-------------------------------RRLEEERAREMERVRLEEQERqqqver 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 633 VRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISElqseiadlqGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEK 712
Cdd:pfam17380 465 LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE---------RKQAMIEEERKRKLLEKEMEERQKAIYEEERR 535
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 672056291 713 TQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAaawteEKARSLTRDLEQSHQEQ 770
Cdd:pfam17380 536 REAEEERRKQQEMEERRRIQEQMRKATEERSRLEAM-----EREREMMRQIVESEKAR 588
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
773-922 |
1.83e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 773 SLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADcekVTERcEQTLQSLEGRYRQElKDLLDQH 852
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKE---LRER-RNELQKLEKRLLQK-EENLDRK 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672056291 853 LEErsqwefekdeLTQECTEAQEQLEEVLQREKaTALARSQEQETLEKTHKERL---AILSME--REQLLQDLKD 922
Cdd:PRK12704 102 LEL----------LEKREEELEKKEKELEQKQQ-ELEKKEEELEELIEEQLQELeriSGLTAEeaKEILLEKVEE 165
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
631-996 |
2.62e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 631 DKVRHYEKQLDHTRVACEKEQVAMKQKYEQgmRTLEKQISELQSEIADLQGQAAVLKEAHHKAS---------CRHEEEK 701
Cdd:COG3096 272 DYMRHANERRELSERALELRRELFGARRQL--AEEQYRLVEMARELEELSARESDLEQDYQAASdhlnlvqtaLRQQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 702 KQLQMVFDE--EKTQLQEELRLE-HEQ--ELKARLQQAEESFRQEREGLA----------------QAAAWTEEKARSLT 760
Cdd:COG3096 350 ERYQEDLEEltERLEEQEEVVEEaAEQlaEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiqyQQAVQALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 761 rDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQReLQEGREEmetecnrrVSQIEAQFQADC----EKVTERCEQTLQS 836
Cdd:COG3096 430 -GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQK-LSVADAA--------RRQFEKAYELVCkiagEVERSQAWQTARE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 837 LEGRYRqELKDLLDQHLEERSQW-EFEKDELTQEctEAQEQLEEVLQR-----EKATALARSQ-EQETLEKTHKERLAIL 909
Cdd:COG3096 500 LLRRYR-SQQALAQRLQQLRAQLaELEQRLRQQQ--NAERLLEEFCQRigqqlDAAEELEELLaELEAQLEELEEQAAEA 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 910 SMEREQLLQDLKDLQntseRQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQLGS--QQLARLQVEHEQERREMAGK 987
Cdd:COG3096 577 VEQRSELRQQLEQLR----ARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAamQQLLEREREATVERDELAAR 652
|
....*....
gi 672056291 988 IAALESAHR 996
Cdd:COG3096 653 KQALESQIE 661
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
854-1680 |
2.83e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 854 EERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHKERlailsmeREQLLQDLKDLQNTSERQHSL 933
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAK-------RVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 934 LSDQMLELKRSQEreLREPEHVLCQTGVSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVsceRADQEKAEMSAEI 1013
Cdd:PTZ00121 1174 DAKKAEAARKAEE--VRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA---KKDAEEAKKAEEE 1248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1014 RRLQSTVKDLQQATSLLVlqggcRATAGEEAEGNGALSLLQQGEQLLEENgdvliSLQKAHE-RAVKENAKMATEISRLQ 1092
Cdd:PTZ00121 1249 RNNEEIRKFEEARMAHFA-----RRQAAIKAEEARKADELKKAEEKKKAD-----EAKKAEEkKKADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1093 QRLKKLEPGSAISSCLEERMTEisgsSREHAEPVMKRGTATKHflsdpgdhEAQGLGSTGTSSVQRQECRTEESEASLEC 1172
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEE----AKKAAEAAKAEAEAAAD--------EAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1173 FSELENSEDTRTESWDLKSQIIQLQ----EQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDA 1248
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKKKADELKkaaaAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1249 ARENACLQEELRLMEMRYADSLDSNKEltaEVYRLQDEMKKMEEVTGTFLSLENS-----YDEVKLENEKLSALVLRlqg 1323
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEAKKAAEAKKKADEAKKAeeakkADEAKKAEEAKKADEAK--- 1540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1324 KMEEVLERAALQgdsyslwegPSENLEVTSDEKMLELHQTEEECTPEVMSRHHI---IEECRQETRC----------CEQ 1390
Cdd:PTZ00121 1541 KAEEKKKADELK---------KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEakkAEEARIEEVMklyeeekkmkAEE 1611
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1391 GSTQLLAGIKAHEIawfrRKIETHQEKPSVQNRVILEESAALLGLQGthlQHEATIAELELEKQKLQELTRNLRERVTTL 1470
Cdd:PTZ00121 1612 AKKAEEAKIKAEEL----KKAEEEKKKVEQLKKKEAEEKKKAEELKK---AEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1471 AKQKDAPSQGEEEEELKAVMHDLQITCGEMQRKVELLRyeseKLQEENSILRNEITTLNEEDsisNLKLEELNGSQEELw 1550
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK----KAEEENKIKAEEAKKEAEED---KKKAEEAKKDEEEK- 1756
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1551 QKIETIEQEKASIQKMVEKLKKQV--SDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEML-CQKEDPGTCTSEKW 1627
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAVieEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVInDSKEMEDSAIKEVA 1836
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 672056291 1628 EQENESLKE--ELDRYKVQTSTLVSSLEAELSEVKLQTHIVE--QENLLLKDELERL 1680
Cdd:PTZ00121 1837 DSKNMQLEEadAFEKHKFNKNNENGEDGNKEADFNKEKDLKEddEEEIEEADEIEKI 1893
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
424-564 |
2.83e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 424 EEYKERIAALKNELRQEREQiLQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSK 503
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKE-LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672056291 504 LQRSLENVL--AEKFGDLDPS----SAEFFLQEERLAQMRNEYEQQcrlLQDQVDELQSELEEYQAQ 564
Cdd:COG4942 102 QKEELAELLraLYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPA---RREQAEELRADLAELAAL 165
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1634-1914 |
2.86e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1634 LKEELDRYKVQTSTL--------VSSLEAELSEVKLQTHIVEQENLLLKDELERLKQlhrcpDLSDFQQKMCSILSYNEN 1705
Cdd:COG1196 218 LKEELKELEAELLLLklreleaeLEELEAELEELEAELEELEAELAELEAELEELRL-----ELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1706 LLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQV 1785
Cdd:COG1196 293 LLAELARLEQDIARLEERRRE---LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1786 TRQEKEALKQEVMSLHLQLQNAIDKdwVSETATHLSGLQGQQKRLSwNKLDHLMSEEPELLcQESKRLQTVVQNTQADLT 1865
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALL-ERLERLEEELEELE-EALAELEEEEEEEEEALE 445
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 672056291 1866 HSREKIRQLESNLLptKHQKQLNQSCTVKPIEQEKLALKRECEQSRKER 1914
Cdd:COG1196 446 EAAEEEAELEEEEE--ALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
368-1031 |
3.43e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 368 EIRHLLERVDQvvrekekLRSDLDKAEKLkslmaseVDDHHAAIERRNEYNLR-KLDEEYKERIAALKNELRQEREQILQ 446
Cdd:COG3096 506 SQQALAQRLQQ-------LRAQLAELEQR-------LRQQQNAERLLEEFCQRiGQQLDAAEELEELLAELEAQLEELEE 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 447 QV---GKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLEnvlaekfgdldpss 523
Cdd:COG3096 572 QAaeaVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLE-------------- 637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 524 aefflQEERLAQMRNEYEQQCRLLQDQVDELQseleeyQAQG----RVLRLpcQNALSEEL--DGHGDGIEQDQEPGSGE 597
Cdd:COG3096 638 -----REREATVERDELAARKQALESQIERLS------QPGGaedpRLLAL--AERLGGVLlsEIYDDVTLEDAPYFSAL 704
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 598 CNPLNMSI---EAELVIEQLkeqHHRDLCHLRLEL--------EDKVRHYEKQLDHTRVACEKEQVamkqKYEQ------ 660
Cdd:COG3096 705 YGPARHAIvvpDLSAVKEQL---AGLEDCPEDLYLiegdpdsfDDSVFDAEELEDAVVVKLSDRQW----RYSRfpevpl 777
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 661 -GMRTLEKQISELQSEiadlqgqAAVLKEAHHKAScrheeekkqlqmvFDEEKTQlqeelRLEH--EQELKARLQQA--- 734
Cdd:COG3096 778 fGRAAREKRLEELRAE-------RDELAEQYAKAS-------------FDVQKLQ-----RLHQafSQFVGGHLAVAfap 832
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 735 --EESFRQEREGLAQAaawteEKARSLTRDLEQSHQEQLLSLMEKHALekeeLRKELS-------EYHQRELQEGREEME 805
Cdd:COG3096 833 dpEAELAALRQRRSEL-----ERELAQHRAQEQQLRQQLDQLKEQLQL----LNKLLPqanlladETLADRLEELREELD 903
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 806 tecnrrvsqiEAQfqaDCEKVTERCEQTLQSLEgryrqELKDLLDQHLEERSQWEFEKDELTQECTEAQEQ---LEEVLQ 882
Cdd:COG3096 904 ----------AAQ---EAQAFIQQHGKALAQLE-----PLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQifaLSEVVQ 965
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 883 REkaTALARSQEQETLEKTH------KERLAILSMEREQLLQDLKDLQNTSERQHSLLSDqmleLKRSQE---RELREPE 953
Cdd:COG3096 966 RR--PHFSYEDAVGLLGENSdlneklRARLEQAEEARREAREQLRQAQAQYSQYNQVLAS----LKSSRDakqQTLQELE 1039
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 672056291 954 HVLCQTGVSEQLGSQQLARLQV-EHEQERREMAGKIAALEsAHRVSCEradqekAEMSAEIRRLQSTVKDLQQATSLLV 1031
Cdd:COG3096 1040 QELEELGVQADAEAEERARIRRdELHEELSQNRSRRSQLE-KQLTRCE------AEMDSLQKRLRKAERDYKQEREQVV 1111
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1538-1756 |
3.74e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1538 KLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKE 1617
Cdd:COG4942 35 EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALY 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1618 DPGTCTSEKWEQENESLKEELDRYKVqTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHrcpdlsdfqqkmc 1697
Cdd:COG4942 115 RLGRQPPLALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELEAERAELEALL------------- 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 672056291 1698 silsynENLLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAWEEQSQDLKSQLA 1756
Cdd:COG4942 181 ------AELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIA 230
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1452-1951 |
3.86e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1452 EKQKLQELTRNLRERVTTLAKQKdaPSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEE 1531
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1532 DSISNLKLEELNGSQEELWQKIEtiEQEKA-SIQKMVEKLKKQVSDLKLK---NQQLDSENKELSQKNSQNKEELKTLNQ 1607
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAE--EKKKAdEAKKKAEEDKKKADELKKAaaaKKKADEAKKKAEEKKKADEAKKKAEEA 1443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1608 RLAEMLCQKEDPGTCTSEKWEQENESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLK--DELERLKQLHR 1685
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKK 1523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1686 CPDLSDFQQKMcsilsynenllKEKEVLSEELKSCADKL--AESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQ 1763
Cdd:PTZ00121 1524 ADEAKKAEEAK-----------KADEAKKAEEKKKADELkkAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1764 NLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAIDKDWVSETATHLSGLQGQQKRLSWNKLDHLMSEEP 1843
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1844 E-LLCQESKRLQTVVQNTQADLTHSREKIRQLESnlLPTKHQKQLNQSCTVKPIEQEKlalKRECEQSRKERSPTSRKVS 1922
Cdd:PTZ00121 1673 DkKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE--LKKKEAEEKKKAEELKKAEEEN---KIKAEEAKKEAEEDKKKAE 1747
|
490 500 510
....*....|....*....|....*....|
gi 672056291 1923 QMSSLERELETI-HLENEGLKKKQVRLDEK 1951
Cdd:PTZ00121 1748 EAKKDEEEKKKIaHLKKEEEKKAEEIRKEK 1777
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1541-1791 |
4.04e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.32 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1541 ELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLnqrlaemlcqkedpg 1620
Cdd:pfam05667 311 EAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEEL--------------- 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1621 tctsekwEQENESLKEEldrYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLkdELERLKQLHRCPDLSDFQQkmcsil 1700
Cdd:pfam05667 376 -------KEQNEELEKQ---YKVKKKTLDLLPDAEENIAKLQALVDASAQRLV--ELAGQWEKHRVPLIEEYRA------ 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1701 synenllkEKEVLSEELKSCADKLAESSLLEHRIATIKEEREAWEEQSQDLKSQL-ALSQEK-----VQNLEDILKNVNL 1774
Cdd:pfam05667 438 --------LKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKEELYKQLVAEYeRLPKDVsrsayTRRILEIVKNIKK 509
|
250
....*....|....*...
gi 672056291 1775 QMAQIESDLQVTR-QEKE 1791
Cdd:pfam05667 510 QKEEITKILSDTKsLQKE 527
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1499-2107 |
4.13e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1499 EMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETieqEKASIQKMVEKLKKQVSDLK 1578
Cdd:TIGR04523 37 QLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKK---NKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1579 LKNQQ---LDSENKELSQKNSQNKEELKTLNQRLaemlcqkedpgtctsEKWEQENESLKEELDRYKVQTSTLvssleaE 1655
Cdd:TIGR04523 114 NDKEQknkLEVELNKLEKQKKENKKNIDKFLTEI---------------KKKEKELEKLNNKYNDLKKQKEEL------E 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1656 LSEVKLQTHIVEQENLLLKDELERLKQLHRCPDLSDFQQKMCSILSYNENLLKEKEVLSEELKSCADKLAEsslLEHRIA 1735
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE---KTTEIS 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1736 TIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEAlkqevmslhlqlqnaidkDWVSE 1815
Cdd:TIGR04523 250 NTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ------------------DWNKE 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1816 TATHLSGLQGQqkrlswnkldhlmseepellcqeskrlqtvVQNTQADLTHSREKIRQLE---SNLLPTKHQKQLNQSCT 1892
Cdd:TIGR04523 312 LKSELKNQEKK------------------------------LEEIQNQISQNNKIISQLNeqiSQLKKELTNSESENSEK 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1893 VKPIEQEKLALKRECEQSRKERSPTSRKVSQMSSLERELETIHLEN----EGLKKKQVRLDEKLMEMQPLRSAGTHSPSS 1968
Cdd:TIGR04523 362 QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNqqkdEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1969 HWDLQllqqqacpmvprEQFLQLQQQLLQAEKRSQHLQEELDNRTSEPNtvqgsqehlvnlmeermiEVEQKLKLVKRLL 2048
Cdd:TIGR04523 442 IKDLT------------NQDSVKELIIKNLDNTRESLETQLKVLSRSIN------------------KIKQNLEQKQKEL 491
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 672056291 2049 QEKVNQLKEQLCKNSKTDAMVKDLYVENAQLLKALEMTEQRQKTAEKKNFLLEEKIASL 2107
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKD 550
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
316-903 |
4.40e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 316 EEGIENSQEILKALDFSLDGNINLTELTLALENELlvtknGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEK 395
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELI-----KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 396 LKSLMAsevddhhaaierrneyNLRKLDEEYKERIAALKNELRQEREQIlqqvgkqrVELEQEIEKAKTEENYIRDrLAL 475
Cdd:PRK03918 236 LKEEIE----------------ELEKELESLEGSKRKLEEKIRELEERI--------EELKKEIEELEEKVKELKE-LKE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 476 SLKENNRLENELLENAEKLAEYENLTSKLQRSLENVlAEKFGDLDPSSAEFFLQEERLAQMRNEYE--QQCRLLQDQVDE 553
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI-EERIKELEEKEERLEELKKKLKELEKRLEelEERHELYEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 554 LQSELEEYQAQGRVLRLPCQNALSEELDGHGDGIEQDQEPGSGECNPLNMSI-EAELVIEQLKEQHHR-DLCHLRLELED 631
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIkELKKAIEELKKAKGKcPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 632 KVRHYEK-QLDHTRVACEKEQVAMK-QKYEQGMRTLEKQISElQSEIADLQGQAAVLKEAhhkascrhEEEKKQLQMVFD 709
Cdd:PRK03918 450 RKELLEEyTAELKRIEKELKEIEEKeRKLRKELRELEKVLKK-ESELIKLKELAEQLKEL--------EEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 710 EEKTQLQEELRlEHEQELKARLQQAEESFRQErEGLAQAAAWTEEKARSLTRDLEQSHQEqLLSLMEKHALEKEELRKEL 789
Cdd:PRK03918 521 EKKAEEYEKLK-EKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKE-LEELGFESVEELEERLKEL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 790 SEYHQR--ELQEGREEMETECNRRVS---QIEAQFQ--ADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFE 862
Cdd:PRK03918 598 EPFYNEylELKDAEKELEREEKELKKleeELDKAFEelAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 672056291 863 KDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHK 903
Cdd:PRK03918 678 LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
384-946 |
4.62e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 384 EKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLDEEYKERIAALKNELRQErEQILQQVGKQRVELEQEIEKAK 463
Cdd:pfam01576 144 EDQNSKLSKERKLLEERISEFTSNLAEEEEKAK-SLSKLKNKHEAMISDLEERLKKE-EKGRQELEKAKRKLEGESTDLQ 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 464 TEENYIRDRLALSLKENNRLENEL---LENAEKLAEYENLTSKLQRSLENVLAEKFGDLdpssaefflqeERLAQMRNEY 540
Cdd:pfam01576 222 EQIAELQAQIAELRAQLAKKEEELqaaLARLEEETAQKNNALKKIRELEAQISELQEDL-----------ESERAARNKA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 541 EQQCRLLQDQVDELQSELEEyqaqgrvlrlpcqnalseeldghgdgieqdqepgsgecnplnmSIEAELVIEQLKEQHHR 620
Cdd:pfam01576 291 EKQRRDLGEELEALKTELED-------------------------------------------TLDTTAAQQELRSKREQ 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 621 DLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMR---TLEKQISELQSEIADLQGQAAVLKEAHHKASCRH 697
Cdd:pfam01576 328 EVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnkaNLEKAKQALESENAELQAELRTLQQAKQDSEHKR 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 698 EEEKKQLQmvfdeektqlqeELRLEHEQELKARLQQAEESFR--QEREGLAQAAAWTEEKARSLTRDLEQSHQEqllsLM 775
Cdd:pfam01576 408 KKLEGQLQ------------ELQARLSESERQRAELAEKLSKlqSELESVSSLLNEAEGKNIKLSKDVSSLESQ----LQ 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 776 EKHALEKEELRKELSEYHQ-----------RELQEGREEMETECNRRVSQIEAQFqADCEKVTERCEQTLQSLEGRYRQE 844
Cdd:pfam01576 472 DTQELLQEETRQKLNLSTRlrqledernslQEQLEEEEEAKRNVERQLSTLQAQL-SDMKKKLEEDAGTLEALEEGKKRL 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 845 LKDL--LDQHLEERSQ----WEFEKDELTQECTEA-----------------QEQLEEVLQREKATALARSQEQETLEKT 901
Cdd:pfam01576 551 QRELeaLTQQLEEKAAaydkLEKTKNRLQQELDDLlvdldhqrqlvsnlekkQKKFDQMLAEEKAISARYAEERDRAEAE 630
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 672056291 902 HKERLA-ILSMEREqlLQDLKDLQNTSERQHSLLSDQMLELKRSQE 946
Cdd:pfam01576 631 AREKETrALSLARA--LEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
653-913 |
4.75e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.98 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 653 AMKQKYEQgMRTLEKQISELQSEIADLQGQAAVLKEAHhkascrheEEKKQLQMVFDEEkTQLQEEL-RLEHEQELKARL 731
Cdd:COG0497 159 EYREAYRA-WRALKKELEELRADEAERARELDLLRFQL--------EELEAAALQPGEE-EELEEERrRLSNAEKLREAL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 732 QQAEESFRQEreglaqaaawteekarsltrdlEQSHQEQLLSLMekHALEK-EELRKELSEYHQReLQEGREEMEtECNR 810
Cdd:COG0497 229 QEALEALSGG----------------------EGGALDLLGQAL--RALERlAEYDPSLAELAER-LESALIELE-EAAS 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 811 RVSQIEAQFQAD---CEKVTERCeQTLQSLEGRYRQELKDLLDQH------LEERSQWEFEKDELTQECTEAQEQLeevl 881
Cdd:COG0497 283 ELRRYLDSLEFDperLEEVEERL-ALLRRLARKYGVTVEELLAYAeelraeLAELENSDERLEELEAELAEAEAEL---- 357
|
250 260 270
....*....|....*....|....*....|....
gi 672056291 882 qREKATAL--ARSQEQETLEKTHKERLAILSMER 913
Cdd:COG0497 358 -LEAAEKLsaARKKAAKKLEKAVTAELADLGMPN 390
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1514-1796 |
5.02e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.44 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1514 LQEENSILRNEITTLNEEDSISNLKLEELNGSQ-EELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQqldsenKELS 1592
Cdd:pfam00038 23 LEQQNKLLETKISELRQKKGAEPSRLYSLYEKEiEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYE------DELN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1593 QKNSQnKEELKTLNQRLAEMLCQKEDpgtctsekWEQENESLKEELDRYKVQTSTLVSSLEAELSEvklQTHIVEQENLL 1672
Cdd:pfam00038 97 LRTSA-ENDLVGLRKDLDEATLARVD--------LEAKIESLKEELAFLKKNHEEEVRELQAQVSD---TQVNVEMDAAR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1673 ----------LKDELERLKQLHRCPDLSDFQQKMcsilsynENLLKEKEVLSEELKSCADKLAESSL----LEHRIATIK 1738
Cdd:pfam00038 165 kldltsalaeIRAQYEEIAAKNREEAEEWYQSKL-------EELQQAAARNGDALRSAKEEITELRRtiqsLEIELQSLK 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 672056291 1739 EEREAWEEQSQDLKSQLALSQEKVQNledilknvnlQMAQIESDLQVTRQEKEALKQE 1796
Cdd:pfam00038 238 KQKASLERQLAETEERYELQLADYQE----------LISELEAELQETRQEMARQLRE 285
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
831-1092 |
5.12e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 831 EQTLQSLEGRYRQELK-DLLDQHLEErsqwefekdeLTQECTEAQEQLEevlqrekatALARSQEQETLEKTHKERLAIL 909
Cdd:PRK11281 66 EQTLALLDKIDRQKEEtEQLKQQLAQ----------APAKLRQAQAELE---------ALKDDNDEETRETLSTLSLRQL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 910 SMEREQLLQDLKDLQNT--------------SERQHSLLSDQmleLKRSQE------------RELREPEHVLCQTgvse 963
Cdd:PRK11281 127 ESRLAQTLDQLQNAQNDlaeynsqlvslqtqPERAQAALYAN---SQRLQQirnllkggkvggKALRPSQRVLLQA---- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 964 qlgsqQLARLQVEHEQERREMAG--KIAALESAHRvsceradqekAEMSAEIRRLQSTVKDLQ-------------QATS 1028
Cdd:PRK11281 200 -----EQALLNAQNDLQRKSLEGntQLQDLLQKQR----------DYLTARIQRLEHQLQLLQeainskrltlsekTVQE 264
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672056291 1029 LLVLQGGCRATAG----EEAEGNGALS--LLQQGEQLLEENGD------VLISLQKAhERAVKEnakmatEISRLQ 1092
Cdd:PRK11281 265 AQSQDEAARIQANplvaQELEINLQLSqrLLKATEKLNTLTQQnlrvknWLDRLTQS-ERNIKE------QISVLK 333
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
709-821 |
6.08e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 41.02 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 709 DEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKarslTRDLEQSHQEQLLSLMEKHALEKEELRKE 788
Cdd:cd16269 181 AEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLEEQQRELEQK----LEDQERSYEEHLRQLKEKMEEERENLLKE 256
|
90 100 110
....*....|....*....|....*....|...
gi 672056291 789 LSEYHQRELQEGREEMETECNRRVSQIEAQFQA 821
Cdd:cd16269 257 QERALESKLKEQEALLEEGFKEQAELLQEEIRS 289
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1188-1680 |
8.23e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1188 DLKSQIIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDAARENACLQEELRLMEMRY- 1266
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAl 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1267 ADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLERAALQGDSYSLWEGPS 1346
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1347 ENLEVTSDEKMLELHQTEeectpevmSRHHIIEECRqetrccEQGSTQLLAGIKAHEIAWFRRKIETHQEKPSVQNRVIL 1426
Cdd:COG1196 473 ALLEAALAELLEELAEAA--------ARLLLLLEAE------ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1427 EESAALLGlqgthLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEELKAVMHDLQITCGEMQRKVEL 1506
Cdd:COG1196 539 ALEAALAA-----ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1507 LRYESEKLQEENSIL-------RNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKL 1579
Cdd:COG1196 614 RYYVLGDTLLGRTLVaarleaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672056291 1580 KNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEdpgtctsekwEQENESLKEELDRYKVQTSTLVSSLEAELSEV 1659
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE----------AEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
490 500
....*....|....*....|.
gi 672056291 1660 KLQTHIVEqenllLKDELERL 1680
Cdd:COG1196 764 ELERELER-----LEREIEAL 779
|
|
| |
