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Conserved domains on  [gi|672079573|ref|XP_008769301|]
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occludin/ELL domain-containing protein 1 isoform X2 [Rattus norvegicus]

Protein Classification

Occludin_ELL superfamily-containing protein( domain architecture ID 8456)

Occludin_ELL superfamily-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Occludin_ELL super family cl06365
Occludin homology domain; This domain represents a conserved region approximately 100 residues ...
 113-166 2.73e-15

Occludin homology domain; This domain represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localizes to tight junctions, while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA. This shared domain is thought to mediate protein interactions.


The actual alignment was detected with superfamily member pfam07303:

Pssm-ID: 462140 [Multi-domain]  Cd Length: 101  Bit Score: 69.10  E-value: 2.73e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 672079573  113 YPPVTSRRDRSRYAAVFQDQYEEFLELQRQVGAMQAKLQQLEALLLSLPPPRSQ 166
Cdd:pfam07303   1 YPPITSDEQRQRYKQEFNAEYDEYKELHAELDAVSRKFQKLDRELKSLPEGSKE 54
 
Name Accession Description Interval E-value
Occludin_ELL pfam07303
Occludin homology domain; This domain represents a conserved region approximately 100 residues ...
 113-166 2.73e-15

Occludin homology domain; This domain represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localizes to tight junctions, while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA. This shared domain is thought to mediate protein interactions.


Pssm-ID: 462140 [Multi-domain]  Cd Length: 101  Bit Score: 69.10  E-value: 2.73e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 672079573  113 YPPVTSRRDRSRYAAVFQDQYEEFLELQRQVGAMQAKLQQLEALLLSLPPPRSQ 166
Cdd:pfam07303   1 YPPITSDEQRQRYKQEFNAEYDEYKELHAELDAVSRKFQKLDRELKSLPEGSKE 54
 
Name Accession Description Interval E-value
Occludin_ELL pfam07303
Occludin homology domain; This domain represents a conserved region approximately 100 residues ...
 113-166 2.73e-15

Occludin homology domain; This domain represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localizes to tight junctions, while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA. This shared domain is thought to mediate protein interactions.


Pssm-ID: 462140 [Multi-domain]  Cd Length: 101  Bit Score: 69.10  E-value: 2.73e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 672079573  113 YPPVTSRRDRSRYAAVFQDQYEEFLELQRQVGAMQAKLQQLEALLLSLPPPRSQ 166
Cdd:pfam07303   1 YPPITSDEQRQRYKQEFNAEYDEYKELHAELDAVSRKFQKLDRELKSLPEGSKE 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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