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Conserved domains on  [gi|685948009|ref|XP_009268312|]
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Mitotic spindle-associated MMXD complex subunit MIP18 [Wallemia ichthyophaga EXF-994]

Protein Classification

iron-sulfur cluster assembly protein( domain architecture ID 1838)

iron-sulfur cluster assembly protein such as MIP18 family proteins, which are involved in the assembly of iron-sulfur (Fe-S) clusters essential for the function of many proteins, including enzymes that catalyze metabolic reactions.

Gene Ontology:  GO:0016226|GO:0106035

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG5133 super family cl00941
Uncharacterized conserved protein [Function unknown];
3-185 5.14e-54

Uncharacterized conserved protein [Function unknown];


The actual alignment was detected with superfamily member COG5133:

Pssm-ID: 470001  Cd Length: 181  Bit Score: 169.79  E-value: 5.14e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685948009   3 AEKINANPIIHQ------TVEESERNVYSDSDPWSTDFLAPDAQVGDINPDyanananatlektpaqAIDADELFHLLKD 76
Cdd:COG5133    2 AEFLNENPDIKEmnqlpfRAESEEDLLLGSSLEERHPIESENGVLQNEEPD----------------LIDQQEIYDLIAD 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685948009  77 INDPEHPLTLEQLAVVSKAQITVDD--EQNE---ATILFTPTIPHCSMSTLIGLCLRVRLIRSLPPRFKVDVRVREGTHM 151
Cdd:COG5133   66 IRDPEHPLTLEQLSVVSLEDISVPDgiAPNVircVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHVQVHIKKGTHI 145
                        170       180       190
                 ....*....|....*....|....*....|....
gi 685948009 152 QEAAINKQLNDKERVAAALENGHLIDVVQQCLST 185
Cdd:COG5133  146 SERQVNKQLNDKERVAAACENEQLLDVMEKMLPT 179
 
Name Accession Description Interval E-value
COG5133 COG5133
Uncharacterized conserved protein [Function unknown];
3-185 5.14e-54

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 227462  Cd Length: 181  Bit Score: 169.79  E-value: 5.14e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685948009   3 AEKINANPIIHQ------TVEESERNVYSDSDPWSTDFLAPDAQVGDINPDyanananatlektpaqAIDADELFHLLKD 76
Cdd:COG5133    2 AEFLNENPDIKEmnqlpfRAESEEDLLLGSSLEERHPIESENGVLQNEEPD----------------LIDQQEIYDLIAD 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685948009  77 INDPEHPLTLEQLAVVSKAQITVDD--EQNE---ATILFTPTIPHCSMSTLIGLCLRVRLIRSLPPRFKVDVRVREGTHM 151
Cdd:COG5133   66 IRDPEHPLTLEQLSVVSLEDISVPDgiAPNVircVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHVQVHIKKGTHI 145
                        170       180       190
                 ....*....|....*....|....*....|....
gi 685948009 152 QEAAINKQLNDKERVAAALENGHLIDVVQQCLST 185
Cdd:COG5133  146 SERQVNKQLNDKERVAAACENEQLLDVMEKMLPT 179
FeS_assembly_P pfam01883
Iron-sulfur cluster assembly protein; This family has an alpha/beta topology, with 13 ...
74-138 6.43e-06

Iron-sulfur cluster assembly protein; This family has an alpha/beta topology, with 13 conserved hydrophobic residues at its core and a putative active site containing a highly conserved cysteine. Members of this family are involved in a range of physiological functions. The family includes PaaJ (PhaH) from Pseudomonas putida. PaaJ forms a complex with PaaG (PhaF), PaaI (PhaG) and PaaK (PhaI), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. It also includes PaaD from Escherichia coli, a member of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation. Furthermore, several members of this family are shown to be involved in iron-sulfur (FeS) cluster assembly. Iron-sulfur (FeS) clusters are inorganic co-factors that are are able to transfer electrons and act as catalysts. They are involved in diverse cellular processes including cellular respiration, DNA replication and repair, antibiotic resistance, and dinitrogen fixation. The biogenesis of such clusters from elemental iron and sulfur is an enzymatic process that requires a set of specialized proteins. Proteins containing this domain include the chloroplast protein HCF101 (high chlorophyll fluorescence 101), which has been described as an essential and specific factor for assembly of [4Fe-4S]-cluster-containing protein complexes such as the membrane complex Photosystem I (PSI) and the heterodimeric FTR (ferredoxin-thioredoxin reductase) complex and is involved in the assembly of [4Fe-4S] clusters and their transfer to apoproteins. The mature HCF101 protein contains this domain at the N-terminal as well as eight cysteine residues along the sequence. All cysteine residues are conserved among higher plants, but of the two cysteine residues located in this domain only Cys128 is highly conserved and is present in the highly conserved P-loop domain of the plant HCF101 (CKGGVGKS). SufT protein from Staphylococcus aureus is composed of this domain solely and is shown to be involved in the maturation of FeS proteins. Given all this data, it is hypothesized that this domain might play a role in FeS cluster assembly.


Pssm-ID: 460370  Cd Length: 73  Bit Score: 42.24  E-value: 6.43e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 685948009   74 LKDINDPEHPLTLEQLAVVSKaqitVDDEQNEATILFTPTIPHCSMSTLIGLCLRvRLIRSLPPR 138
Cdd:pfam01883   8 LRTVIDPETGVDLVSLGLVRN----IDIEGGKVSVDITLTYPACPAAEAIRADAE-AALRALPGE 67
 
Name Accession Description Interval E-value
COG5133 COG5133
Uncharacterized conserved protein [Function unknown];
3-185 5.14e-54

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 227462  Cd Length: 181  Bit Score: 169.79  E-value: 5.14e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685948009   3 AEKINANPIIHQ------TVEESERNVYSDSDPWSTDFLAPDAQVGDINPDyanananatlektpaqAIDADELFHLLKD 76
Cdd:COG5133    2 AEFLNENPDIKEmnqlpfRAESEEDLLLGSSLEERHPIESENGVLQNEEPD----------------LIDQQEIYDLIAD 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685948009  77 INDPEHPLTLEQLAVVSKAQITVDD--EQNE---ATILFTPTIPHCSMSTLIGLCLRVRLIRSLPPRFKVDVRVREGTHM 151
Cdd:COG5133   66 IRDPEHPLTLEQLSVVSLEDISVPDgiAPNVircVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHVQVHIKKGTHI 145
                        170       180       190
                 ....*....|....*....|....*....|....
gi 685948009 152 QEAAINKQLNDKERVAAALENGHLIDVVQQCLST 185
Cdd:COG5133  146 SERQVNKQLNDKERVAAACENEQLLDVMEKMLPT 179
FeS_assembly_P pfam01883
Iron-sulfur cluster assembly protein; This family has an alpha/beta topology, with 13 ...
74-138 6.43e-06

Iron-sulfur cluster assembly protein; This family has an alpha/beta topology, with 13 conserved hydrophobic residues at its core and a putative active site containing a highly conserved cysteine. Members of this family are involved in a range of physiological functions. The family includes PaaJ (PhaH) from Pseudomonas putida. PaaJ forms a complex with PaaG (PhaF), PaaI (PhaG) and PaaK (PhaI), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. It also includes PaaD from Escherichia coli, a member of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation. Furthermore, several members of this family are shown to be involved in iron-sulfur (FeS) cluster assembly. Iron-sulfur (FeS) clusters are inorganic co-factors that are are able to transfer electrons and act as catalysts. They are involved in diverse cellular processes including cellular respiration, DNA replication and repair, antibiotic resistance, and dinitrogen fixation. The biogenesis of such clusters from elemental iron and sulfur is an enzymatic process that requires a set of specialized proteins. Proteins containing this domain include the chloroplast protein HCF101 (high chlorophyll fluorescence 101), which has been described as an essential and specific factor for assembly of [4Fe-4S]-cluster-containing protein complexes such as the membrane complex Photosystem I (PSI) and the heterodimeric FTR (ferredoxin-thioredoxin reductase) complex and is involved in the assembly of [4Fe-4S] clusters and their transfer to apoproteins. The mature HCF101 protein contains this domain at the N-terminal as well as eight cysteine residues along the sequence. All cysteine residues are conserved among higher plants, but of the two cysteine residues located in this domain only Cys128 is highly conserved and is present in the highly conserved P-loop domain of the plant HCF101 (CKGGVGKS). SufT protein from Staphylococcus aureus is composed of this domain solely and is shown to be involved in the maturation of FeS proteins. Given all this data, it is hypothesized that this domain might play a role in FeS cluster assembly.


Pssm-ID: 460370  Cd Length: 73  Bit Score: 42.24  E-value: 6.43e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 685948009   74 LKDINDPEHPLTLEQLAVVSKaqitVDDEQNEATILFTPTIPHCSMSTLIGLCLRvRLIRSLPPR 138
Cdd:pfam01883   8 LRTVIDPETGVDLVSLGLVRN----IDIEGGKVSVDITLTYPACPAAEAIRADAE-AALRALPGE 67
PaaD COG2151
Metal-sulfur cluster biosynthetic enzyme [Posttranslational modification, protein turnover, ...
59-145 5.29e-04

Metal-sulfur cluster biosynthetic enzyme [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441754  Cd Length: 102  Bit Score: 37.78  E-value: 5.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685948009  59 KTPAQAIDADELFHLLKDINDPEHPLTLEQLAVVSKAQItvdDEQNEATILFTPTIPHCSMSTLIGLCLRVRLiRSLPPR 138
Cdd:COG2151    1 SEETAEPLEEEVWEALKTVYDPEIPVNIVDLGLIYDVEV---DDDGRVKVTMTLTTPGCPAADVIPDDVEEAL-EEVPGV 76

                 ....*..
gi 685948009 139 FKVDVRV 145
Cdd:COG2151   77 EDVEVEL 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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