zinc finger CCHC domain-containing protein 8 isoform X2 [Mus musculus]
C2HC-type zinc finger protein( domain architecture ID 10646723)
C2HC-type zinc finger protein similar to caulimoviridae capsid protein
List of domain hits
Name | Accession | Description | Interval | E-value | ||
PSP super family | cl02643 | PSP; Proline rich domain found in numerous spliceosome associated proteins. |
66-118 | 1.68e-19 | ||
PSP; Proline rich domain found in numerous spliceosome associated proteins. The actual alignment was detected with superfamily member smart00581: Pssm-ID: 470641 Cd Length: 54 Bit Score: 82.02 E-value: 1.68e-19
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ZnF_C2HC | smart00343 | zinc finger; |
12-26 | 1.53e-03 | ||
zinc finger; : Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 35.88 E-value: 1.53e-03
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Name | Accession | Description | Interval | E-value | ||
PSP | smart00581 | proline-rich domain in spliceosome associated proteins; |
66-118 | 1.68e-19 | ||
proline-rich domain in spliceosome associated proteins; Pssm-ID: 128850 Cd Length: 54 Bit Score: 82.02 E-value: 1.68e-19
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PSP | pfam04046 | PSP; Proline rich domain found in numerous spliceosome associated proteins. |
70-116 | 1.17e-16 | ||
PSP; Proline rich domain found in numerous spliceosome associated proteins. Pssm-ID: 461145 Cd Length: 46 Bit Score: 73.63 E-value: 1.17e-16
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CUS1 | COG5182 | Splicing factor 3b, subunit 2 [RNA processing and modification]; |
70-105 | 4.26e-04 | ||
Splicing factor 3b, subunit 2 [RNA processing and modification]; Pssm-ID: 227509 [Multi-domain] Cd Length: 429 Bit Score: 42.67 E-value: 4.26e-04
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ZnF_C2HC | smart00343 | zinc finger; |
12-26 | 1.53e-03 | ||
zinc finger; Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 35.88 E-value: 1.53e-03
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zf-CCHC | pfam00098 | Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ... |
10-27 | 1.64e-03 | ||
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger. Pssm-ID: 395050 [Multi-domain] Cd Length: 18 Bit Score: 35.97 E-value: 1.64e-03
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Name | Accession | Description | Interval | E-value | ||
PSP | smart00581 | proline-rich domain in spliceosome associated proteins; |
66-118 | 1.68e-19 | ||
proline-rich domain in spliceosome associated proteins; Pssm-ID: 128850 Cd Length: 54 Bit Score: 82.02 E-value: 1.68e-19
|
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PSP | pfam04046 | PSP; Proline rich domain found in numerous spliceosome associated proteins. |
70-116 | 1.17e-16 | ||
PSP; Proline rich domain found in numerous spliceosome associated proteins. Pssm-ID: 461145 Cd Length: 46 Bit Score: 73.63 E-value: 1.17e-16
|
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CUS1 | COG5182 | Splicing factor 3b, subunit 2 [RNA processing and modification]; |
70-105 | 4.26e-04 | ||
Splicing factor 3b, subunit 2 [RNA processing and modification]; Pssm-ID: 227509 [Multi-domain] Cd Length: 429 Bit Score: 42.67 E-value: 4.26e-04
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ZnF_C2HC | smart00343 | zinc finger; |
12-26 | 1.53e-03 | ||
zinc finger; Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 35.88 E-value: 1.53e-03
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zf-CCHC | pfam00098 | Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ... |
10-27 | 1.64e-03 | ||
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger. Pssm-ID: 395050 [Multi-domain] Cd Length: 18 Bit Score: 35.97 E-value: 1.64e-03
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Blast search parameters | ||||
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