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Conserved domains on  [gi|767910818|ref|XP_011508425|]
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nuclear pore membrane glycoprotein 210-like isoform X3 [Homo sapiens]

Protein Classification

YjdB and Big_2 domain-containing protein( domain architecture ID 11475468)

YjdB and Big_2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 1083-1157 2.38e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


:

Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 49.70  E-value: 2.38e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767910818  1083 PPFRLLPEKMTLIPMNMMQVMSEGGPQPQSI--VHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDTGKVI 1157
Cdd:pfam02368    1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDkkVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 495-545 9.53e-03

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


:

Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 40.83  E-value: 9.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 767910818  495 NFTWTSSNETVVIVTTKGVVTAGQVrGNSTVLARdVQNPFRYGEIKIHVLK 545
Cdd:COG5492   378 NVTWSSSDPSVATVDSNGLVTAVAA-GTATITAT-TKDGGKTATCTVTVTA 426
 
Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 1083-1157 2.38e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 49.70  E-value: 2.38e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767910818  1083 PPFRLLPEKMTLIPMNMMQVMSEGGPQPQSI--VHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDTGKVI 1157
Cdd:pfam02368    1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDkkVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
BID_2 smart00635
Bacterial Ig-like domain 2;
1081-1156 1.84e-04

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 41.62  E-value: 1.84e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767910818   1081 VFPPFRLLPEKMTLIPMN----MMQVMSEGGPQpQSIVHFSISNQTVA-VVNRRGQ-VTGKIVGTAVVHGTIQTVNEDTG 1154
Cdd:smart00635    1 VVTSVTVTPTTASVKKGLtlqlTATVTPSSAGV-TGKVTWTSSNPSVAtVVNASGLvVTAVAAGTATITATSGDGSSATG 79


                    ..
gi 767910818   1155 KV 1156
Cdd:smart00635   80 VI 81
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 495-545 9.53e-03

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 40.83  E-value: 9.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 767910818  495 NFTWTSSNETVVIVTTKGVVTAGQVrGNSTVLARdVQNPFRYGEIKIHVLK 545
Cdd:COG5492   378 NVTWSSSDPSVATVDSNGLVTAVAA-GTATITAT-TKDGGKTATCTVTVTA 426
 
Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 1083-1157 2.38e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 49.70  E-value: 2.38e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767910818  1083 PPFRLLPEKMTLIPMNMMQVMSEGGPQPQSI--VHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDTGKVI 1157
Cdd:pfam02368    1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDkkVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
BID_2 smart00635
Bacterial Ig-like domain 2;
1081-1156 1.84e-04

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 41.62  E-value: 1.84e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767910818   1081 VFPPFRLLPEKMTLIPMN----MMQVMSEGGPQpQSIVHFSISNQTVA-VVNRRGQ-VTGKIVGTAVVHGTIQTVNEDTG 1154
Cdd:smart00635    1 VVTSVTVTPTTASVKKGLtlqlTATVTPSSAGV-TGKVTWTSSNPSVAtVVNASGLvVTAVAAGTATITATSGDGSSATG 79


                    ..
gi 767910818   1155 KV 1156
Cdd:smart00635   80 VI 81
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 495-545 9.53e-03

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 40.83  E-value: 9.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 767910818  495 NFTWTSSNETVVIVTTKGVVTAGQVrGNSTVLARdVQNPFRYGEIKIHVLK 545
Cdd:COG5492   378 NVTWSSSDPSVATVDSNGLVTAVAA-GTATITAT-TKDGGKTATCTVTVTA 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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