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Conserved domains on  [gi|767940487|ref|XP_011513101|]
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vacuolar protein sorting-associated protein 52 homolog isoform X2 [Homo sapiens]

Protein Classification

Vps52 domain-containing protein( domain architecture ID 10514074)

Vps52 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Vps52 pfam04129
Vps52 / Sac2 family; Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex ...
27-534 0e+00

Vps52 / Sac2 family; Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events.


:

Pssm-ID: 282044  Cd Length: 508  Bit Score: 775.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487   27 IEQKSIRDYIQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVD 106
Cdd:pfam04129   1 NEDKSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQLRLENRQAVESKLSPFVD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  107 GLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPM 186
Cdd:pfam04129  81 DLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQSFKSSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  187 TNYQIPQTALLKYRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVEDTAKKGFF 266
Cdd:pfam04129 161 TNYQIIQNALLKYKFIFPFLLDNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMGVETTAKGLFF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  267 SKP-SLRSRNTIFTLGTRGSVISPtELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFVVSGPAAH 345
Cdd:pfam04129 241 SKPvSLKKRNTIFTIGKRGNILTM-QLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNATSEYLFLKEFFAVSGDQAE 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  346 DLFHAVMGRTLSMTLKHLDSYLADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVR 425
Cdd:pfam04129 320 DIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINRLQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLR 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  426 STDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLINNYDMML 505
Cdd:pfam04129 400 KANITTLVEPDTRPHYLTRRYAEFLSSFVTLSVTHPNEIVERLLNRLQREVEDFILRLAKCFPKRKSQLRFLINNYDLLL 479
                         490       500
                  ....*....|....*....|....*....
gi 767940487  506 GVLMERAADDSKEVESFQQLLNARTQEFI 534
Cdd:pfam04129 480 GVLMELHLDLSKEQEDFQEYLNSNTENFV 508
 
Name Accession Description Interval E-value
Vps52 pfam04129
Vps52 / Sac2 family; Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex ...
27-534 0e+00

Vps52 / Sac2 family; Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events.


Pssm-ID: 282044  Cd Length: 508  Bit Score: 775.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487   27 IEQKSIRDYIQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVD 106
Cdd:pfam04129   1 NEDKSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQLRLENRQAVESKLSPFVD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  107 GLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPM 186
Cdd:pfam04129  81 DLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQSFKSSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  187 TNYQIPQTALLKYRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVEDTAKKGFF 266
Cdd:pfam04129 161 TNYQIIQNALLKYKFIFPFLLDNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMGVETTAKGLFF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  267 SKP-SLRSRNTIFTLGTRGSVISPtELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFVVSGPAAH 345
Cdd:pfam04129 241 SKPvSLKKRNTIFTIGKRGNILTM-QLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNATSEYLFLKEFFAVSGDQAE 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  346 DLFHAVMGRTLSMTLKHLDSYLADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVR 425
Cdd:pfam04129 320 DIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINRLQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLR 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  426 STDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLINNYDMML 505
Cdd:pfam04129 400 KANITTLVEPDTRPHYLTRRYAEFLSSFVTLSVTHPNEIVERLLNRLQREVEDFILRLAKCFPKRKSQLRFLINNYDLLL 479
                         490       500
                  ....*....|....*....|....*....
gi 767940487  506 GVLMERAADDSKEVESFQQLLNARTQEFI 534
Cdd:pfam04129 480 GVLMELHLDLSKEQEDFQEYLNSNTENFV 508
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
13-173 2.70e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 2.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487   13 LRHYSKQVELELQQIEQKSIRDYIQESEN-IASLHNQITACDAVLERME-QMLGAFQSDLSSISSEIRTLQEQsgamnir 90
Cdd:COG4913   281 LRLWFAQRRLELLEAELEELRAELARLEAeLERLEARLDALREELDELEaQIRGNGGDRLEQLEREIERLERE------- 353
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487   91 LRNRQAVRGKLGELVDGLVvpsalvtaiLEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTK 170
Cdd:COG4913   354 LEERERRRARLEALLAALG---------LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424

                  ...
gi 767940487  171 IRE 173
Cdd:COG4913   425 EAE 427
 
Name Accession Description Interval E-value
Vps52 pfam04129
Vps52 / Sac2 family; Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex ...
27-534 0e+00

Vps52 / Sac2 family; Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events.


Pssm-ID: 282044  Cd Length: 508  Bit Score: 775.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487   27 IEQKSIRDYIQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVD 106
Cdd:pfam04129   1 NEDKSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQLRLENRQAVESKLSPFVD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  107 GLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPM 186
Cdd:pfam04129  81 DLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQSFKSSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  187 TNYQIPQTALLKYRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVEDTAKKGFF 266
Cdd:pfam04129 161 TNYQIIQNALLKYKFIFPFLLDNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMGVETTAKGLFF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  267 SKP-SLRSRNTIFTLGTRGSVISPtELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFVVSGPAAH 345
Cdd:pfam04129 241 SKPvSLKKRNTIFTIGKRGNILTM-QLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNATSEYLFLKEFFAVSGDQAE 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  346 DLFHAVMGRTLSMTLKHLDSYLADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVR 425
Cdd:pfam04129 320 DIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINRLQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLR 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487  426 STDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLINNYDMML 505
Cdd:pfam04129 400 KANITTLVEPDTRPHYLTRRYAEFLSSFVTLSVTHPNEIVERLLNRLQREVEDFILRLAKCFPKRKSQLRFLINNYDLLL 479
                         490       500
                  ....*....|....*....|....*....
gi 767940487  506 GVLMERAADDSKEVESFQQLLNARTQEFI 534
Cdd:pfam04129 480 GVLMELHLDLSKEQEDFQEYLNSNTENFV 508
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
13-173 2.70e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 2.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487   13 LRHYSKQVELELQQIEQKSIRDYIQESEN-IASLHNQITACDAVLERME-QMLGAFQSDLSSISSEIRTLQEQsgamnir 90
Cdd:COG4913   281 LRLWFAQRRLELLEAELEELRAELARLEAeLERLEARLDALREELDELEaQIRGNGGDRLEQLEREIERLERE------- 353
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487   91 LRNRQAVRGKLGELVDGLVvpsalvtaiLEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTK 170
Cdd:COG4913   354 LEERERRRARLEALLAALG---------LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424

                  ...
gi 767940487  171 IRE 173
Cdd:COG4913   425 EAE 427
Sec3_C pfam09763
Exocyst complex component Sec3; This entry is the conserved middle and C-terminus of the Sec3 ...
18-134 4.39e-04

Exocyst complex component Sec3; This entry is the conserved middle and C-terminus of the Sec3 protein. Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.


Pssm-ID: 401638  Cd Length: 696  Bit Score: 43.47  E-value: 4.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767940487   18 KQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAV 97
Cdd:pfam09763   8 ERLSRELSKLEYANIKSLLESDKRVNELMKHIDKALKECDELDPTLTLYSMELSTLSDDIEYIESQNNGLQVQSANQKLL 87
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 767940487   98 RGKLGELVDGLVVPSALVTAILEAPVTEPRFLEQLQE 134
Cdd:pfam09763  88 YKELESLLNTVSLPESDLHALLEGPLSSPNGLEALEA 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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