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Conserved domains on  [gi|767944693|ref|XP_011513354|]
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protein SPMIP7 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPATA48 super family cl20943
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 307-420 1.52e-64

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


The actual alignment was detected with superfamily member pfam15073:

Pssm-ID: 434439  Cd Length: 128  Bit Score: 203.08  E-value: 1.52e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767944693  307 VKPINF--------------GHVQSTNADDVDNPLGDIASLAKQRYSKPLYTNTSRAANIPGYTGKVHFTATHPANSNIP 372
Cdd:pfam15073   1 AKPINFvspssrskyiplytGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 767944693  373 STTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVTTVRPYNPFNKKDKE 420
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Name Accession Description Interval E-value
SPATA48 pfam15073
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 307-420 1.52e-64

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


Pssm-ID: 434439  Cd Length: 128  Bit Score: 203.08  E-value: 1.52e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767944693  307 VKPINF--------------GHVQSTNADDVDNPLGDIASLAKQRYSKPLYTNTSRAANIPGYTGKVHFTATHPANSNIP 372
Cdd:pfam15073   1 AKPINFvspssrskyiplytGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 767944693  373 STTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVTTVRPYNPFNKKDKE 420
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Name Accession Description Interval E-value
SPATA48 pfam15073
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 307-420 1.52e-64

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


Pssm-ID: 434439  Cd Length: 128  Bit Score: 203.08  E-value: 1.52e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767944693  307 VKPINF--------------GHVQSTNADDVDNPLGDIASLAKQRYSKPLYTNTSRAANIPGYTGKVHFTATHPANSNIP 372
Cdd:pfam15073   1 AKPINFvspssrskyiplytGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 767944693  373 STTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVTTVRPYNPFNKKDKE 420
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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