|
Name |
Accession |
Description |
Interval |
E-value |
| Muskelin_N |
pfam06588 |
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in ... |
12-207 |
8.41e-128 |
|
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1. :
Pssm-ID: 284099 Cd Length: 197 Bit Score: 368.76 E-value: 8.41e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 12 ECRLLPYALHKWSSFSSTYLPENILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFG 91
Cdd:pfam06588 1 EYSVLPYEIHSYSSYSSVYLPENILVDDPNDQNSRWSTSTNSPPQYLILKLPRPAIVTTITFGKYEKMHVCNLKKFRVYG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 92 GMNEENMTELLSSGLKNDYNKETFTLKHKI-DEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSK 170
Cdd:pfam06588 81 GRDGEEMRELLCGGLKNDSNMETFNLLVKDyNEIYFPCQYIKIVPLLAWGPSFNFSIWYVELHGIDDPSAVSEFVKNYEM 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 767947841 171 YREQEAIRLCLKHFRQHNYTEAFESLQKKTKIALEHP 207
Cdd:pfam06588 161 VREGEAIRLCLKHFRQCGYLDIFEILQKRTSDKIEHP 197
|
|
| NanM super family |
cl34543 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
248-407 |
1.99e-08 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; The actual alignment was detected with superfamily member COG3055:
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 55.55 E-value: 1.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 248 KPRWSQIIPKSTKGdgednrpgmRGGHQMVidVQTETVYLFGGWDGTQD----LADFWAYSVKENQWTcisrdtEKENGP 323
Cdd:COG3055 47 TNTWSELAPLPGPP---------RHHAAAV--AQDGKLYVFGGFTGANPsstpLNDVYVYDPATNTWT------KLAPMP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 324 SARSCHKMCIDiqRRQIYTLGRYLDSSVRNskslksDFYRYDIDTNTWMLLSEDTAADggpklvfDHQMCMDSEKHMIYT 403
Cdd:COG3055 110 TPRGGATALLL--DGKIYVVGGWDDGGNVA------WVEVYDPATGTWTQLAPLPTPR-------DHLAAAVLPDGKILV 174
|
....
gi 767947841 404 FGGR 407
Cdd:COG3055 175 IGGR 178
|
|
| CTLH |
smart00668 |
C-terminal to LisH motif; Alpha-helical motif of unknown function. |
206-258 |
7.67e-03 |
|
C-terminal to LisH motif; Alpha-helical motif of unknown function. :
Pssm-ID: 128914 Cd Length: 58 Bit Score: 34.85 E-value: 7.67e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 767947841 206 HPMLTDIHDKLVLKGDFDACEELIEKAVNDGL-----FNQYISQQEYKPRWSQIIPKS 258
Cdd:smart00668 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLernskLEFELRKQKFLELVRQGKLEE 58
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Muskelin_N |
pfam06588 |
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in ... |
12-207 |
8.41e-128 |
|
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1.
Pssm-ID: 284099 Cd Length: 197 Bit Score: 368.76 E-value: 8.41e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 12 ECRLLPYALHKWSSFSSTYLPENILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFG 91
Cdd:pfam06588 1 EYSVLPYEIHSYSSYSSVYLPENILVDDPNDQNSRWSTSTNSPPQYLILKLPRPAIVTTITFGKYEKMHVCNLKKFRVYG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 92 GMNEENMTELLSSGLKNDYNKETFTLKHKI-DEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSK 170
Cdd:pfam06588 81 GRDGEEMRELLCGGLKNDSNMETFNLLVKDyNEIYFPCQYIKIVPLLAWGPSFNFSIWYVELHGIDDPSAVSEFVKNYEM 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 767947841 171 YREQEAIRLCLKHFRQHNYTEAFESLQKKTKIALEHP 207
Cdd:pfam06588 161 VREGEAIRLCLKHFRQCGYLDIFEILQKRTSDKIEHP 197
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
248-407 |
1.99e-08 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 55.55 E-value: 1.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 248 KPRWSQIIPKSTKGdgednrpgmRGGHQMVidVQTETVYLFGGWDGTQD----LADFWAYSVKENQWTcisrdtEKENGP 323
Cdd:COG3055 47 TNTWSELAPLPGPP---------RHHAAAV--AQDGKLYVFGGFTGANPsstpLNDVYVYDPATNTWT------KLAPMP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 324 SARSCHKMCIDiqRRQIYTLGRYLDSSVRNskslksDFYRYDIDTNTWMLLSEDTAADggpklvfDHQMCMDSEKHMIYT 403
Cdd:COG3055 110 TPRGGATALLL--DGKIYVVGGWDDGGNVA------WVEVYDPATGTWTQLAPLPTPR-------DHLAAAVLPDGKILV 174
|
....
gi 767947841 404 FGGR 407
Cdd:COG3055 175 IGGR 178
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
282-334 |
2.49e-07 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 47.28 E-value: 2.49e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 767947841 282 TETVYLFGGWD--GTQDLADFWAYSVKENQWTCISrdtekeNGPSARSCHKMCID 334
Cdd:pfam13415 1 GDKLYIFGGLGfdGQTRLNDLYVYDLDTNTWTQIG------DLPPPRSGHSATYI 49
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
285-376 |
2.60e-06 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 49.21 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 285 VYLFGGWDGTQDLADFWAYSVKENQWTCISRdTEKENGPSARSCHKMCIDiqRRQIYTLGRYLDSSVRNSKSLKSDFYRY 364
Cdd:PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTK-LDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAY 164
|
90
....*....|..
gi 767947841 365 DIDTNTWMLLSE 376
Cdd:PLN02153 165 NIADGKWVQLPD 176
|
|
| Kelch |
smart00612 |
Kelch domain; |
285-311 |
8.70e-04 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 37.15 E-value: 8.70e-04
10 20
....*....|....*....|....*..
gi 767947841 285 VYLFGGWDGTQDLADFWAYSVKENQWT 311
Cdd:smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWT 28
|
|
| LisH |
smart00667 |
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, ... |
172-202 |
4.87e-03 |
|
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Pssm-ID: 128913 Cd Length: 34 Bit Score: 34.72 E-value: 4.87e-03
10 20 30
....*....|....*....|....*....|.
gi 767947841 172 REQEAIRLCLKHFRQHNYTEAFESLQKKTKI 202
Cdd:smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
|
| CTLH |
smart00668 |
C-terminal to LisH motif; Alpha-helical motif of unknown function. |
206-258 |
7.67e-03 |
|
C-terminal to LisH motif; Alpha-helical motif of unknown function.
Pssm-ID: 128914 Cd Length: 58 Bit Score: 34.85 E-value: 7.67e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 767947841 206 HPMLTDIHDKLVLKGDFDACEELIEKAVNDGL-----FNQYISQQEYKPRWSQIIPKS 258
Cdd:smart00668 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLernskLEFELRKQKFLELVRQGKLEE 58
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Muskelin_N |
pfam06588 |
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in ... |
12-207 |
8.41e-128 |
|
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1.
Pssm-ID: 284099 Cd Length: 197 Bit Score: 368.76 E-value: 8.41e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 12 ECRLLPYALHKWSSFSSTYLPENILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFG 91
Cdd:pfam06588 1 EYSVLPYEIHSYSSYSSVYLPENILVDDPNDQNSRWSTSTNSPPQYLILKLPRPAIVTTITFGKYEKMHVCNLKKFRVYG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 92 GMNEENMTELLSSGLKNDYNKETFTLKHKI-DEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSK 170
Cdd:pfam06588 81 GRDGEEMRELLCGGLKNDSNMETFNLLVKDyNEIYFPCQYIKIVPLLAWGPSFNFSIWYVELHGIDDPSAVSEFVKNYEM 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 767947841 171 YREQEAIRLCLKHFRQHNYTEAFESLQKKTKIALEHP 207
Cdd:pfam06588 161 VREGEAIRLCLKHFRQCGYLDIFEILQKRTSDKIEHP 197
|
|
| F5_F8_type_C |
pfam00754 |
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family. |
24-152 |
7.81e-09 |
|
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
Pssm-ID: 459925 [Multi-domain] Cd Length: 127 Bit Score: 53.61 E-value: 7.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 24 SSFSSTYLPENiLVDkpNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLS 103
Cdd:pfam00754 6 SSYSGEGPAAA-ALD--GDPNTAWSAWSGDDPQWIQVDLGKPKKITGVVTQGRQDGSNGYVTSYKIEYSLDGENWTTVKD 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 767947841 104 SGLKNDYNKETftlkhkIDEQMFPC----RFIKIVPlLSWGPSFNFSIWyVEL 152
Cdd:pfam00754 83 EKIPGNNDNNT------PVTNTFDPpikaRYVRIVP-TSWNGGNGIALR-AEL 127
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
248-407 |
1.99e-08 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 55.55 E-value: 1.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 248 KPRWSQIIPKSTKGdgednrpgmRGGHQMVidVQTETVYLFGGWDGTQD----LADFWAYSVKENQWTcisrdtEKENGP 323
Cdd:COG3055 47 TNTWSELAPLPGPP---------RHHAAAV--AQDGKLYVFGGFTGANPsstpLNDVYVYDPATNTWT------KLAPMP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 324 SARSCHKMCIDiqRRQIYTLGRYLDSSVRNskslksDFYRYDIDTNTWMLLSEDTAADggpklvfDHQMCMDSEKHMIYT 403
Cdd:COG3055 110 TPRGGATALLL--DGKIYVVGGWDDGGNVA------WVEVYDPATGTWTQLAPLPTPR-------DHLAAAVLPDGKILV 174
|
....
gi 767947841 404 FGGR 407
Cdd:COG3055 175 IGGR 178
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
284-407 |
1.94e-07 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 52.47 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 284 TVYLFGGWDGTQDLADFWAYSVKENQWtcisrdTEKENGPSARSCHKMCIdIQRRQIYTLGRYldSSVRNSKSLKSDFYR 363
Cdd:COG3055 24 KVYVAGGLSGGSASNSFEVYDPATNTW------SELAPLPGPPRHHAAAV-AQDGKLYVFGGF--TGANPSSTPLNDVYV 94
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 767947841 364 YDIDTNTWmllsedTAADGGPKLVFDHQMCMDSEKhmIYTFGGR 407
Cdd:COG3055 95 YDPATNTW------TKLAPMPTPRGGATALLLDGK--IYVVGGW 130
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
282-334 |
2.49e-07 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 47.28 E-value: 2.49e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 767947841 282 TETVYLFGGWD--GTQDLADFWAYSVKENQWTCISrdtekeNGPSARSCHKMCID 334
Cdd:pfam13415 1 GDKLYIFGGLGfdGQTRLNDLYVYDLDTNTWTQIG------DLPPPRSGHSATYI 49
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
285-376 |
2.60e-06 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 49.21 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 285 VYLFGGWDGTQDLADFWAYSVKENQWTCISRdTEKENGPSARSCHKMCIDiqRRQIYTLGRYLDSSVRNSKSLKSDFYRY 364
Cdd:PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTK-LDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAY 164
|
90
....*....|..
gi 767947841 365 DIDTNTWMLLSE 376
Cdd:PLN02153 165 NIADGKWVQLPD 176
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
270-314 |
3.89e-06 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 43.75 E-value: 3.89e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 767947841 270 MRGGHQMVidVQTETVYLFGGWDGTQDLADFWAYSVKENQWTCIS 314
Cdd:pfam01344 1 RRSGAGVV--VVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKLP 43
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
268-422 |
1.58e-05 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 46.69 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 268 PGMRGGHQMVidVQTETVYLFGGWDGTQDLADFWAYSVKENQWTCIS-----RD-------------------------- 316
Cdd:COG3055 109 PTPRGGATAL--LLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQLAplptpRDhlaaavlpdgkilviggrngsgfsnt 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 317 -TEKENGPSARSCHKMCIDIQRrqIYTLGRYLDSSvrnskslkSDFYRYDIDTNTWMLLSEDTAADGGPKLVfdhqmcmd 395
Cdd:COG3055 187 wTTLAPLPTARAGHAAAVLGGK--ILVFGGESGFS--------DEVEAYDPATNTWTALGELPTPRHGHAAV-------- 248
|
170 180
....*....|....*....|....*..
gi 767947841 396 sekhmiyTFGGRILTCNGSVDDSRASE 422
Cdd:COG3055 249 -------LTDGKVYVIGGETKPGVRTP 268
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
284-386 |
5.92e-05 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 45.33 E-value: 5.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 284 TVYLFGGWDGTQDLADFWAYSVKENQWTCIsrdTEKENGPSARSCHKMCIDiqRRQIYTLGRYldSSVRNSKSLKSdfyr 363
Cdd:PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLL---TPVEEGPTPRSFHSMAAD--EENVYVFGGV--SATARLKTLDS---- 298
|
90 100
....*....|....*....|....*.
gi 767947841 364 YDIDTNTWMLLS---EDTAADGGPKL 386
Cdd:PLN02193 299 YNIVDKKWFHCStpgDSFSIRGGAGL 324
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
307-461 |
1.17e-04 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 44.21 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 307 ENQWtcISRDTEKENGPSARSCHKMCIdiQRRQIYTLGryldSSVRNSKSLKSDFYRYDIDTNTWMLlsedTAADGGPKL 386
Cdd:PLN02153 6 QGGW--IKVEQKGGKGPGPRCSHGIAV--VGDKLYSFG----GELKPNEHIDKDLYVFDFNTHTWSI----APANGDVPR 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767947841 387 VFDHQMCMDSEKHMIYTFGGRiltcngsvDDSRAsepqFSGLFAFNCQCQTWKLLREDSCNAGPEdiqSRIGHCM 461
Cdd:PLN02153 74 ISCLGVRMVAVGTKLYIFGGR--------DEKRE----FSDFYSYDTVKNEWTFLTKLDEEGGPE---ARTFHSM 133
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
318-441 |
2.79e-04 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 43.41 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767947841 318 EKENGPSARSCHkmciDIQR--RQIYTLGRYLDSSVRNSKSLksdfYRYDIDTNTWMLlsedTAADGGPKLVFDHQMCMD 395
Cdd:PLN02193 158 QKGEGPGLRCSH----GIAQvgNKIYSFGGEFTPNQPIDKHL----YVFDLETRTWSI----SPATGDVPHLSCLGVRMV 225
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 767947841 396 SEKHMIYTFGGRiltcngsvDDSRasepQFSGLFAFNCQCQTWKLL 441
Cdd:PLN02193 226 SIGSTLYVFGGR--------DASR----QYNGFYSFDTTTNEWKLL 259
|
|
| Kelch_4 |
pfam13418 |
Galactose oxidase, central domain; |
271-314 |
3.19e-04 |
|
Galactose oxidase, central domain;
Pssm-ID: 433191 [Multi-domain] Cd Length: 49 Bit Score: 38.36 E-value: 3.19e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 767947841 271 RGGHQMVIdVQTETVYLFGG--WDGTQdLADFWAYSVKENQWTCIS 314
Cdd:pfam13418 2 RAYHTSTS-IPDDTIYLFGGegEDGTL-LSDLWVFDLSTNEWTRLG 45
|
|
| Kelch |
smart00612 |
Kelch domain; |
285-311 |
8.70e-04 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 37.15 E-value: 8.70e-04
10 20
....*....|....*....|....*..
gi 767947841 285 VYLFGGWDGTQDLADFWAYSVKENQWT 311
Cdd:smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWT 28
|
|
| LisH |
smart00667 |
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, ... |
172-202 |
4.87e-03 |
|
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Pssm-ID: 128913 Cd Length: 34 Bit Score: 34.72 E-value: 4.87e-03
10 20 30
....*....|....*....|....*....|.
gi 767947841 172 REQEAIRLCLKHFRQHNYTEAFESLQKKTKI 202
Cdd:smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
|
| CTLH |
smart00668 |
C-terminal to LisH motif; Alpha-helical motif of unknown function. |
206-258 |
7.67e-03 |
|
C-terminal to LisH motif; Alpha-helical motif of unknown function.
Pssm-ID: 128914 Cd Length: 58 Bit Score: 34.85 E-value: 7.67e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 767947841 206 HPMLTDIHDKLVLKGDFDACEELIEKAVNDGL-----FNQYISQQEYKPRWSQIIPKS 258
Cdd:smart00668 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLernskLEFELRKQKFLELVRQGKLEE 58
|
|
|