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Conserved domains on  [gi|767953475|ref|XP_011515543|]
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sperm-associated antigen 1 isoform X2 [Homo sapiens]

Protein Classification

RNA-polymerase II-associated C-terminal domain-containing protein( domain architecture ID 13518948)

RNA-polymerase II-associated C-terminal domain-containing protein with tetratricopeptide repeats (TPRs), similar to human sperm-associated antigen 1 (SPAG1)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 748-839 4.13e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 4.13e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  748 PNNAYEFGQIINALstRKDKEACAHLLAITAPKDLPMFLSNKLEGDTFLLLIQSLKNNLIEK-DPSLVYQHLLYLSKAER 826
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 767953475  827 FKMMLTLISKGQK 839
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 141-339 9.21e-19

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 91.20  E-value: 9.21e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  141 GKEKYSKRPT-KKKTPRDYAEWDKFDVEKECLKIDEDYKEKTVIDKSHLSKIETRiDTAGLTEKEKDFLATREKEKGNEA 219
Cdd:TIGR00990  59 GQQQRESKPKiSKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDES-SVANLSEEERKKYAAKLKEKGNKA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  220 FNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDL 299
Cdd:TIGR00990 138 YRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 767953475  300 SKVLDVEPDNDlaKKTLSEVERDLKN---SEAASETQTKGKRM 339
Cdd:TIGR00990 218 TASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL 258
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
481-705 5.10e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 5.10e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 481 EIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDcgLQLAnDS 560
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD--PDDA-EA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 561 VNRLSRILMELdgpnwreklspipavpasvplqawhpakemiskqagdssshrqqgitdektfkalkeegnqcvndKNYK 640
Cdd:COG0457   79 LNNLGLALQAL-----------------------------------------------------------------GRYE 93

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767953475 641 DALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGLK 705
Cdd:COG0457   94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 748-839 4.13e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 4.13e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  748 PNNAYEFGQIINALstRKDKEACAHLLAITAPKDLPMFLSNKLEGDTFLLLIQSLKNNLIEK-DPSLVYQHLLYLSKAER 826
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 767953475  827 FKMMLTLISKGQK 839
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 141-339 9.21e-19

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 91.20  E-value: 9.21e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  141 GKEKYSKRPT-KKKTPRDYAEWDKFDVEKECLKIDEDYKEKTVIDKSHLSKIETRiDTAGLTEKEKDFLATREKEKGNEA 219
Cdd:TIGR00990  59 GQQQRESKPKiSKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDES-SVANLSEEERKKYAAKLKEKGNKA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  220 FNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDL 299
Cdd:TIGR00990 138 YRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 767953475  300 SKVLDVEPDNDlaKKTLSEVERDLKN---SEAASETQTKGKRM 339
Cdd:TIGR00990 218 TASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL 258
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
215-329 5.10e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 5.10e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 215 KGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLR 293
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 767953475 294 EATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAA 329
Cdd:COG0457   94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
481-705 5.10e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 5.10e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 481 EIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDcgLQLAnDS 560
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD--PDDA-EA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 561 VNRLSRILMELdgpnwreklspipavpasvplqawhpakemiskqagdssshrqqgitdektfkalkeegnqcvndKNYK 640
Cdd:COG0457   79 LNNLGLALQAL-----------------------------------------------------------------GRYE 93

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767953475 641 DALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGLK 705
Cdd:COG0457   94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 446-699 1.05e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.47  E-value: 1.05e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  446 AGLKSQGNELFRSGQFAEAAGKYSAAIALLEPagseiaddlSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLL 525
Cdd:TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  526 RRAMAYETLEQYGKAYVDYkTVLQIDCGLQLANdSVNRLSRILMELDGPNWREKLSPIPA-VPASVPLQAWHPAKEMISK 604
Cdd:TIGR00990 199 RRANAYDGLGKYADALLDL-TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEnLPSVTFVGNYLQSFRPKPR 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  605 QAGDSSSHRqqgiTDEKTFKALKEEGNQCVNDK---NYKDALSKYSECLKINN---KECAIYTNRALCYLKLCQFEEAKQ 678
Cdd:TIGR00990 277 PAGLEDSNE----LDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALDLGKlgeKEAIALNLRGTFKCLKGKHLEALA 352

                         250       260
                  ....*....|....*....|.
gi 767953475  679 DCDQALQLADGNVKAFYRRAL 699
Cdd:TIGR00990 353 DLSKSIELDPRVTQSYIKRAS 373
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 214-284 1.09e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 60.96  E-value: 1.09e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767953475 214 EKGNEAFNSGDYEEAVMYYTRSISALPTVVA-YNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRAT 284
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAElYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 448-604 1.22e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.87  E-value: 1.22e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 448 LKSQGNELFRSGQFAEAAGKYSAAIALlEPAGSEiaddlsiLYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRR 527
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDL-DPNNAE-------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767953475 528 AMAYETLEQYGKAyvdyKTVLQIdcGLQLA-NDSvnRLSRILMELDGPNWREKLSPIPAVPASVPLQAWHPAKEMISK 604
Cdd:PLN03088  77 GTACMKLEEYQTA----KAALEK--GASLApGDS--RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADA 146
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 659-690 1.67e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 1.67e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767953475   659 IYTNRALCYLKLCQFEEAKQDCDQALQLADGN 690
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
659-690 1.75e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 1.75e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 767953475  659 IYTNRALCYLKLCQFEEAKQDCDQALQLADGN 690
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 215-574 9.32e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 9.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  215 KGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLR 293
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDfFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  294 EATEDLSKVLDVEPDNDLAKKTLSEVER---DLKNSEAASETQTKGKRMVIQ--------EIENSEDEEGKSG-RKHEDG 361
Cdd:TIGR02917 551 EAVAWLEKAAELNPQEIEPALALAQYYLgkgQLKKALAILNEAADAAPDSPEawlmlgraQLAAGDLNKAVSSfKKLLAL 630

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  362 GGDKKPAEPAGAARAAqpcVMGNIQKKLTGKAEGGKR-PARGAPQRGQTPEAGADKRsprrasaaaAAGGGATGHPGGGQ 440
Cdd:TIGR02917 631 QPDSALALLLLADAYA---VMKNYAKAITSLKRALELkPDNTEAQIGLAQLLLAAKR---------TESAKKIAKSLQKQ 698

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  441 GAENPAGLKSQGNELFRSGQFAEAAGKYSAAIAlLEPAgseiadDLSILYSNRAacYLKEGNCSGCIQDCNRALELHPFS 520
Cdd:TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-RAPS------SQNAIKLHRA--LLASGNTAEAVKTLEAWLKTHPND 769

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 767953475  521 MKPLLRRAMAYETLEQYGKAYVDYKTVlqidcgLQLANDSV---NRLSRILMELDGP 574
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYQTV------VKKAPDNAvvlNNLAWLYLELKDP 820
TPR_1 pfam00515
Tetratricopeptide repeat;
242-275 3.44e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 3.44e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767953475  242 VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGN 275
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 242-275 4.37e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 4.37e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767953475   242 VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGN 275
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 748-839 4.13e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 4.13e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  748 PNNAYEFGQIINALstRKDKEACAHLLAITAPKDLPMFLSNKLEGDTFLLLIQSLKNNLIEK-DPSLVYQHLLYLSKAER 826
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 767953475  827 FKMMLTLISKGQK 839
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 141-339 9.21e-19

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 91.20  E-value: 9.21e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  141 GKEKYSKRPT-KKKTPRDYAEWDKFDVEKECLKIDEDYKEKTVIDKSHLSKIETRiDTAGLTEKEKDFLATREKEKGNEA 219
Cdd:TIGR00990  59 GQQQRESKPKiSKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDES-SVANLSEEERKKYAAKLKEKGNKA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  220 FNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDL 299
Cdd:TIGR00990 138 YRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 767953475  300 SKVLDVEPDNDlaKKTLSEVERDLKN---SEAASETQTKGKRM 339
Cdd:TIGR00990 218 TASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL 258
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
215-329 5.10e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 5.10e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 215 KGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLR 293
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 767953475 294 EATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAA 329
Cdd:COG0457   94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
216-331 8.01e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.04  E-value: 8.01e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 216 GNEAFNSGDYEEAVMYYTRSISALPTVV-AYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLRE 294
Cdd:COG0457   49 GLAYLRLGRYEEALADYEQALELDPDDAeALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 767953475 295 ATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAASE 331
Cdd:COG0457  129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
214-328 1.04e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 71.48  E-value: 1.04e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 214 EKGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKL 292
Cdd:COG4785   78 ERGVAYDSLGDYDLAIADFDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 767953475 293 REATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEA 328
Cdd:COG4785  158 ELAIADLEKALELDPNDPERALWLYLAERKLDPEKA 193
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
481-705 5.10e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 5.10e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 481 EIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDcgLQLAnDS 560
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD--PDDA-EA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 561 VNRLSRILMELdgpnwreklspipavpasvplqawhpakemiskqagdssshrqqgitdektfkalkeegnqcvndKNYK 640
Cdd:COG0457   79 LNNLGLALQAL-----------------------------------------------------------------GRYE 93

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767953475 641 DALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGLK 705
Cdd:COG0457   94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 446-699 1.05e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.47  E-value: 1.05e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  446 AGLKSQGNELFRSGQFAEAAGKYSAAIALLEPagseiaddlSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLL 525
Cdd:TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  526 RRAMAYETLEQYGKAYVDYkTVLQIDCGLQLANdSVNRLSRILMELDGPNWREKLSPIPA-VPASVPLQAWHPAKEMISK 604
Cdd:TIGR00990 199 RRANAYDGLGKYADALLDL-TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEnLPSVTFVGNYLQSFRPKPR 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  605 QAGDSSSHRqqgiTDEKTFKALKEEGNQCVNDK---NYKDALSKYSECLKINN---KECAIYTNRALCYLKLCQFEEAKQ 678
Cdd:TIGR00990 277 PAGLEDSNE----LDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALDLGKlgeKEAIALNLRGTFKCLKGKHLEALA 352

                         250       260
                  ....*....|....*....|.
gi 767953475  679 DCDQALQLADGNVKAFYRRAL 699
Cdd:TIGR00990 353 DLSKSIELDPRVTQSYIKRAS 373
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 207-329 1.50e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 68.10  E-value: 1.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 207 FLATREKEKGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATT 285
Cdd:COG3914   76 LLAALLELAALLLQALGRYEEALALYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 767953475 286 YKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAA 329
Cdd:COG3914  156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA 199
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 209-331 2.21e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 2.21e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 209 ATREKEKGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYK 287
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 767953475 288 HQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAASE 331
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 216-312 3.07e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.94  E-value: 3.07e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 216 GNEAFNSGDYEEAVMYYTRSISALP-TVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLRE 294
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                         90
                 ....*....|....*...
gi 767953475 295 ATEDLSKVLDVEPDNDLA 312
Cdd:COG3914  199 AIAAYRRALELDPDNADA 216
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 214-329 3.32e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.75  E-value: 3.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 214 EKGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKL 292
Cdd:COG2956  149 ELAELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 767953475 293 REATEDLSKVLDVEPDNDlAKKTLSEVERDLKNSEAA 329
Cdd:COG2956  229 EEALELLRKALELDPSDD-LLLALADLLERKEGLEAA 264
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
451-551 7.63e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.01  E-value: 7.63e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 451 QGNELFRSGQFAEAAGKYSAAIALlEPagseiadDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMA 530
Cdd:COG4785   79 RGVAYDSLGDYDLAIADFDQALEL-DP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                         90       100
                 ....*....|....*....|.
gi 767953475 531 YETLEQYGKAYVDYKTVLQID 551
Cdd:COG4785  151 LYYLGRYELAIADLEKALELD 171
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 216-310 9.37e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.40  E-value: 9.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 216 GNEAFNSGDYEEAVMYYTRSISALP-TVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLRE 294
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                         90
                 ....*....|....*.
gi 767953475 295 ATEDLSKVLDVEPDND 310
Cdd:COG4235  104 AIAAWQKLLALLPADA 119
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 215-309 3.85e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.66  E-value: 3.85e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 215 KGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLR 293
Cdd:COG4783   44 LGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123

                         90
                 ....*....|....*.
gi 767953475 294 EATEDLSKVLDVEPDN 309
Cdd:COG4783  124 EAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
443-701 6.91e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 6.91e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 443 ENPAGLKSQGNELFRSGQFAEAAGKYSAAIallepagsEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMK 522
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKAL--------ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 523 PLLRRAMAYETLEQYGKAYVDYKTVLQIDcglqlandsvnrlsrilmeldgPNwreklspipavpasvplqawhpakemi 602
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALELD----------------------PD--------------------------- 108

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 603 skqagDSSSHRQQGItdektfkALKEEGnqcvndkNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQ 682
Cdd:COG0457  109 -----DAEALYNLGL-------ALLELG-------RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                        250
                 ....*....|....*....
gi 767953475 683 ALQLADGNVKAFYRRALAH 701
Cdd:COG0457  170 LEAAALAALLAAALGEAAL 188
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 214-284 1.09e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 60.96  E-value: 1.09e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767953475 214 EKGNEAFNSGDYEEAVMYYTRSISALPTVVA-YNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRAT 284
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAElYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 204-307 1.20e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 57.66  E-value: 1.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 204 EKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRR 282
Cdd:COG5010   49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNL 128

                         90       100
                 ....*....|....*....|....*
gi 767953475 283 ATTYKHQNKLREATEDLSKVLDVEP 307
Cdd:COG5010  129 AALLLSLGQDDEAKAALQRALGTSP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
244-329 1.32e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 1.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 244 AYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDL 323
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89


                 ....*.
gi 767953475 324 KNSEAA 329
Cdd:COG0457   90 GRYEEA 95
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
621-704 1.53e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.16  E-value: 1.53e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 621 KTFKALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALA 700
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150


                 ....
gi 767953475 701 HKGL 704
Cdd:COG4785  151 LYYL 154
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
223-351 1.58e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 1.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 223 GDYEEAVMYYTRSISALPTVV-AYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSK 301
Cdd:COG0457   90 GRYEEALEDYDKALELDPDDAeALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 767953475 302 VLDVEPDNDLAKKTLSEVERDLKNSEAASETQTKGKRMVIQEIENSEDEE 351
Cdd:COG0457  170 LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
219-308 2.70e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 2.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 219 AFNSGDYEEAVMYYTRSISALP-TVVAYNNRAQAEIKLQNWNSAFQdCEKVLELEPGNVKALLRRATTYKHQNKLREATE 297
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|.
gi 767953475 298 DLSKVLDVEPD 308
Cdd:COG3063   81 YLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 222-331 2.75e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.97  E-value: 2.75e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 222 SGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLS 300
Cdd:COG2956  123 EGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202

                         90       100       110
                 ....*....|....*....|....*....|.
gi 767953475 301 KVLDVEPDNDLAKKTLSEVERDLKNSEAASE 331
Cdd:COG2956  203 RALEQDPDYLPALPRLAELYEKLGDPEEALE 233
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
224-312 4.75e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 57.62  E-value: 4.75e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 224 DYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVL 303
Cdd:COG4785   55 AAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134


                 ....*....
gi 767953475 304 DVEPDNDLA 312
Cdd:COG4785  135 ELDPDYAYA 143
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 448-604 1.22e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.87  E-value: 1.22e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 448 LKSQGNELFRSGQFAEAAGKYSAAIALlEPAGSEiaddlsiLYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRR 527
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDL-DPNNAE-------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767953475 528 AMAYETLEQYGKAyvdyKTVLQIdcGLQLA-NDSvnRLSRILMELDGPNWREKLSPIPAVPASVPLQAWHPAKEMISK 604
Cdd:PLN03088  77 GTACMKLEEYQTA----KAALEK--GASLApGDS--RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADA 146
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 244-329 5.02e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 5.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 244 AYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDL 323
Cdd:COG4235   19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQ 98


                 ....*.
gi 767953475 324 KNSEAA 329
Cdd:COG4235   99 GDYAEA 104
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 216-331 6.64e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 6.64e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 216 GNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLRE 294
Cdd:COG2956   49 GNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 767953475 295 ATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAASE 331
Cdd:COG2956  129 AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIE 165
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 625-704 7.24e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 56.15  E-value: 7.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  625 ALKEEGNQCVNDKNYKDALSKYSECLkINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGL 704
Cdd:TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 214-329 2.89e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 2.89e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 214 EKGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKL 292
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 767953475 293 REATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAA 329
Cdd:COG2956  161 DEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEA 197
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
440-551 3.07e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 52.22  E-value: 3.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 440 QGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLE-PAGSEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHP 518
Cdd:COG4785   25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAErIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP 104

                         90       100       110
                 ....*....|....*....|....*....|...
gi 767953475 519 FSMKPLLRRAMAYETLEQYGKAYVDYKTVLQID 551
Cdd:COG4785  105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELD 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 207-335 3.52e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 3.52e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 207 FLATREKEKGNEAFNSGDYEEAVMYYTRSISALP-TVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATT 285
Cdd:COG2956    6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPeTVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 767953475 286 YKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAASETQTK 335
Cdd:COG2956   86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 443-551 3.77e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.84  E-value: 3.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 443 ENPAGLKSQGNELFRSGQFAEAAGKYSAAIALlepagseiADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMK 522
Cdd:COG3914  110 DNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE 181

                         90       100
                 ....*....|....*....|....*....
gi 767953475 523 PLLRRAMAYETLEQYGKAYVDYKTVLQID 551
Cdd:COG3914  182 ALNNLGNALQDLGRLEEAIAAYRRALELD 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 442-571 6.52e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.07  E-value: 6.52e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 442 AENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPAgSEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSM 521
Cdd:COG3914   68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRA-LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFA 146

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 767953475 522 KPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLANdsvNRLSRILMEL 571
Cdd:COG3914  147 EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEAL---NNLGNALQDL 193
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 218-321 7.45e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.45  E-value: 7.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 218 EAFNSGDYEEAVMYYTRSISALP----TVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVK---ALLRRATTYKHQN 290
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPnsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 767953475 291 KLREATEDLSKVLDVEPDNDLAKKTLSEVER 321
Cdd:COG1729   82 DYDKARATLEELIKKYPDSEAAKEARARLAR 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 637-701 1.47e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.80  E-value: 1.47e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767953475 637 KNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAH 701
Cdd:COG5010   68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
443-580 2.15e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 2.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 443 ENPAGLKSQGNELFRSGQFAEAAGKYSAAIallepagsEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMK 522
Cdd:COG0457   74 DDAEALNNLGLALQALGRYEEALEDYDKAL--------ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 767953475 523 PLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLANDSVNRLSRILMELDGPNWREKL 580
Cdd:COG0457  146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 443-551 2.65e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 2.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 443 ENPAGLKSQGNELFRSGQFAEAAGKYSAAIALlepagseiADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMK 522
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86

                         90       100
                 ....*....|....*....|....*....
gi 767953475 523 PLLRRAMAYETLEQYGKAYVDYKTVLQID 551
Cdd:COG4235   87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 216-328 9.26e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.70  E-value: 9.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  216 GNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREA 295
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789

                          90       100       110
                  ....*....|....*....|....*....|...
gi 767953475  296 TEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEA 328
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRA 822
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 464-551 1.44e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 1.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 464 AAGKYSAAIALLEPAgSEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVD 543
Cdd:COG5010   66 KLGDFEESLALLEQA-LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144


                 ....*...
gi 767953475 544 YKTVLQID 551
Cdd:COG5010  145 LQRALGTS 152
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 624-700 1.57e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.45  E-value: 1.57e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767953475 624 KALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALA 700
Cdd:COG3914   79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 625-705 1.72e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 625 ALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGL 704
Cdd:COG4783   40 AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119


                 .
gi 767953475 705 K 705
Cdd:COG4783  120 G 120
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
251-329 2.05e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 2.05e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767953475 251 AEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREAtEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAA 329
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEA 78
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 443-551 2.12e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 2.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 443 ENPAGLKSQGNELFRSGQFAEAAGKYSAAIALlepagseiADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMK 522
Cdd:COG4783   36 DNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                         90       100
                 ....*....|....*....|....*....
gi 767953475 523 PLLRRAMAYETLEQYGKAYVDYKTVLQID 551
Cdd:COG4783  108 AYLRLARAYRALGRPDEAIAALEKALELD 136
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 224-329 2.64e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 2.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 224 DYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVL 303
Cdd:COG5010   36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                         90       100
                 ....*....|....*....|....*.
gi 767953475 304 DVEPDNDLAKKTLSEVERDLKNSEAA 329
Cdd:COG5010  116 ALSPDNPNAYSNLAALLLSLGQDDEA 141
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 612-705 3.55e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.30  E-value: 3.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 612 HRQQGIT-DEKTFKALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGN 690
Cdd:COG3914  100 LYRRALAlNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179

                         90
                 ....*....|....*
gi 767953475 691 VKAFYRRALAHKGLK 705
Cdd:COG3914  180 AEALNNLGNALQDLG 194
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 456-702 6.02e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 6.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 456 FRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYsNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLE 535
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL-ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 536 QYGKAYVDYKTVLQIDcglQLANDSVNRLSRILMELDgpNWREklspipAVPASVPLQAWHPAKEMISKQAGDssSHRQQ 615
Cdd:COG2956   91 LLDRAEELLEKLLELD---PDDAEALRLLAEIYEQEG--DWEK------AIEVLERLLKLGPENAHAYCELAE--LYLEQ 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 616 GITDE--KTFKALKEEGNQCV-----------NDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQ 682
Cdd:COG2956  158 GDYDEaiEALEKALKLDPDCArallllaelylEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRK 237

                        250       260
                 ....*....|....*....|
gi 767953475 683 ALQLADGNVKAFYRRALAHK 702
Cdd:COG2956  238 ALELDPSDDLLLALADLLER 257
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 455-551 6.65e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.49  E-value: 6.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 455 LFRSGQFAEAAGKYSAAIALLEPAgSEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETL 534
Cdd:COG2956  113 LRLLAEIYEQEGDWEKAIEVLERL-LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191

                         90
                 ....*....|....*..
gi 767953475 535 EQYGKAYVDYKTVLQID 551
Cdd:COG2956  192 GDYEEAIAALERALEQD 208
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 442-700 6.73e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.52  E-value: 6.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 442 AENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYLKE-GNCSGCIQDCNRALELHPFS 520
Cdd:COG3914   32 LEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAlGRYEEALALYRRALALNPDN 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 521 MKPLLRRAMAYETLEQYGKAYVDYKTVLQIDcglqlandsvnrlsrilmeldgPNWreklspipavpasvpLQAWHPake 600
Cdd:COG3914  112 AEALFNLGNLLLALGRLEEALAALRRALALN----------------------PDF---------------AEAYLN--- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 601 miskqagdssshrqQGitdektfKALKEEGNqcvndknYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDC 680
Cdd:COG3914  152 --------------LG-------EALRRLGR-------LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203

                        250       260
                 ....*....|....*....|
gi 767953475 681 DQALQLADGNVKAFYRRALA 700
Cdd:COG3914  204 RRALELDPDNADAHSNLLFA 223
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 455-551 7.53e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.49  E-value: 7.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 455 LFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYsNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETL 534
Cdd:COG2956   79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALR-LLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157

                         90
                 ....*....|....*..
gi 767953475 535 EQYGKAYVDYKTVLQID 551
Cdd:COG2956  158 GDYDEAIEALEKALKLD 174
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
625-712 1.09e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.52  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 625 ALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGL 704
Cdd:COG4785  109 AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188


                 ....*...
gi 767953475 705 KVNEGKEE 712
Cdd:COG4785  189 DPEKALAL 196
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 450-551 1.24e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 450 SQGNELFRSGQFAEAAGKYSAAIALLEPAgSEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAM 529
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKA-LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100
                 ....*....|....*....|..
gi 767953475 530 AYETLEQYGKAYVDYKTVLQID 551
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLD 102
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
462-551 1.34e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 462 AEAAGKYSAAIALLEPAgSEIADDLSILYSNRAACYLKEGNCSGCIQdCNRALELHPFSMKPLLRRAMAYETLEQYGKAY 541
Cdd:COG3063    2 YLKLGDLEEAEEYYEKA-LELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|
gi 767953475 542 VDYKTVLQID 551
Cdd:COG3063   80 AYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
637-701 1.39e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.39e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767953475 637 KNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQdCDQALQLADGNVKAFYRRALAH 701
Cdd:COG3063    6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELL 69
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 659-690 1.67e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 1.67e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 767953475   659 IYTNRALCYLKLCQFEEAKQDCDQALQLADGN 690
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
650-705 1.72e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 1.72e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 767953475 650 LKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGLK 705
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG 56
TPR_1 pfam00515
Tetratricopeptide repeat;
659-690 1.75e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 1.75e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 767953475  659 IYTNRALCYLKLCQFEEAKQDCDQALQLADGN 690
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 454-567 2.51e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 2.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 454 ELFRSGQFAEAAGKYSAAIALLepAGSEIADDlsILYsNRAACYLKEGNCSGCIQDCNRALELHPFSMK---PLLRRAMA 530
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRY--PNSPLAPD--ALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLS 76

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 767953475 531 YETLEQYGKAYVDYKTVLQIDCGLQLANDSVNRLSRI 567
Cdd:COG1729   77 YLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 638-701 3.91e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 3.91e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767953475 638 NYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAH 701
Cdd:COG4235   32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 454-551 4.82e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 4.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 454 ELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYET 533
Cdd:COG5010   21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100

                         90
                 ....*....|....*...
gi 767953475 534 LEQYGKAYVDYKTVLQID 551
Cdd:COG5010  101 SGDKDEAKEYYEKALALS 118
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 261-331 4.88e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 4.88e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767953475 261 AFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAASE 331
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE 72
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 215-574 9.32e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 9.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  215 KGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLR 293
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDfFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  294 EATEDLSKVLDVEPDNDLAKKTLSEVER---DLKNSEAASETQTKGKRMVIQ--------EIENSEDEEGKSG-RKHEDG 361
Cdd:TIGR02917 551 EAVAWLEKAAELNPQEIEPALALAQYYLgkgQLKKALAILNEAADAAPDSPEawlmlgraQLAAGDLNKAVSSfKKLLAL 630

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  362 GGDKKPAEPAGAARAAqpcVMGNIQKKLTGKAEGGKR-PARGAPQRGQTPEAGADKRsprrasaaaAAGGGATGHPGGGQ 440
Cdd:TIGR02917 631 QPDSALALLLLADAYA---VMKNYAKAITSLKRALELkPDNTEAQIGLAQLLLAAKR---------TESAKKIAKSLQKQ 698

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475  441 GAENPAGLKSQGNELFRSGQFAEAAGKYSAAIAlLEPAgseiadDLSILYSNRAacYLKEGNCSGCIQDCNRALELHPFS 520
Cdd:TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-RAPS------SQNAIKLHRA--LLASGNTAEAVKTLEAWLKTHPND 769

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 767953475  521 MKPLLRRAMAYETLEQYGKAYVDYKTVlqidcgLQLANDSV---NRLSRILMELDGP 574
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYQTV------VKKAPDNAvvlNNLAWLYLELKDP 820
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 625-701 1.83e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 1.83e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767953475 625 ALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAH 701
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
TPR_1 pfam00515
Tetratricopeptide repeat;
242-275 3.44e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 3.44e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767953475  242 VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGN 275
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 490-518 4.16e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 4.16e-03
                           10        20
                   ....*....|....*....|....*....
gi 767953475   490 YSNRAACYLKEGNCSGCIQDCNRALELHP 518
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 242-275 4.37e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 4.37e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767953475   242 VVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGN 275
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
269-329 4.39e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.99  E-value: 4.39e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767953475 269 LELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAA 329
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEA 61
TPR_17 pfam13431
Tetratricopeptide repeat;
265-295 5.17e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.21  E-value: 5.17e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 767953475  265 CEKVLELEPGNVKALLRRATTYKHQNKLREA 295
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETA 32
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
452-549 8.27e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.09  E-value: 8.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767953475 452 GNELFRSGQFAEAAGKYSAAIAllepagSEIADDLSILYSnRAACYLKEGNCSGCIQDCNRALELHPFSMKP---LLrRA 528
Cdd:COG4700   96 ADALLELGRYDEAIELYEEALT------GIFADDPHILLG-LAQALFELGRYAEALETLEKLIAKNPDFKSSdahLL-YA 167

                         90       100
                 ....*....|....*....|.
gi 767953475 529 MAYETLEQYGKAYVDYKTVLQ 549
Cdd:COG4700  168 RALEALGDLEAAEAELEALAR 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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