|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
89-261 |
2.86e-23 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 100.25 E-value: 2.86e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 89 KKLTKQDNLALIKSL-------NlslskdggkKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISK 161
Cdd:cd21340 12 KNITKIDNLSLCKNLkvlylydN---------KITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 162 IEGIENMCNLQKLNLAGNEIEhipvwLGKKL-----------KSLRVLNLKGNKISSLQDISKLKPLQDLI--------- 221
Cdd:cd21340 83 VEGLENLTNLEELHIENQRLP-----PGEKLtfdprslaalsNSLRVLNISGNNIDSLEPLAPLRNLEQLDasnnqisdl 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767956127 222 --------------SLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQ 261
Cdd:cd21340 158 eelldllsswpslrELDLTGNPVCKKPKYRDKIILASKSLEVLDGKEITDTERQ 211
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1346-2220 |
9.59e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 107.06 E-value: 9.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1346 RASKRQSEKEMEELHHN---IDDLLQEkksLECEVEELHRTVQKRQQQKDfidgnVESLMTELEIEKSLKHHEDIVDEIE 1422
Cdd:TIGR02168 171 KERRKETERKLERTRENldrLEDILNE---LERQLKSLERQAEKAERYKE-----LKAELRELELALLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1423 CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQ 1502
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1503 ADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRAEL 1582
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEE-------KLEELKEELESLEAELEELEAELEELESR-------LEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1583 EKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA-LRLGETEVTEKCNHIREVKSLLEELSFQKGELNV 1661
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1662 QISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQlENHELQGLKLQHDQRVSELEKTQVAVLEEKLELE 1741
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK-NQSGLSGILGVLSELISVDEGYEAAIEAALGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1742 nlQQI----SQQQKGEIEWQKQ----------LLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTK 1807
Cdd:TIGR02168 548 --QAVvvenLNAAKKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1808 RV---LAAAEENSKMEQSNL--------------------EKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1864
Cdd:TIGR02168 626 LVvddLDNALELAKKLRPGYrivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRK 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1865 AVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLV 1944
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1945 QQEMMFQRLQKERESEESKLEtskvtlkeqqhQLEKELTDQKSKLDQVLSKvlaaeervrtlqeeerwCESLEKTLSQTK 2024
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALD-----------ELRAELTLLNEEAANLRER-----------------LESLERRIAATE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2025 RQLSEREQQLVEKSGELLALQKEadsmRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKnlltinedserdssl 2104
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELEE--------------- 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2105 lskeqkqenscIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKD--LERRQMEISDAMRTLKSEVKD- 2181
Cdd:TIGR02168 899 -----------LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErlSEEYSLTLEEAEALENKIEDDe 967
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 767956127 2182 -EIRTSLKNLNQFLPEL-PADLEAILE------RNENLEGELESLKE 2220
Cdd:TIGR02168 968 eEARRRLKRLENKIKELgPVNLAAIEEyeelkeRYDFLTAQKEDLTE 1014
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-345 |
9.70e-21 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 97.31 E-value: 9.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQ 172
Cdd:COG4886 134 NLTNLKELDLS-----NNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLE 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 173 KLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQDISKLKPLQdliSLILVENPVVTLPHYLQFTifHLRSLeSLEG 252
Cdd:COG4886 209 ELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLPELGNLTNLE---ELDLSNNQLTDLPPLANLT--NLKTL-DLSN 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 253 QPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKN 332
Cdd:COG4886 282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
|
250
....*....|...
gi 767956127 333 ELLKQKTIELTRA 345
Cdd:COG4886 362 LLTLLLTLGLLGL 374
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
435-1058 |
5.60e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.70 E-value: 5.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAgkdllykQLSGRLQLVNKLRQEALD 514
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA-------RLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 LELQMEKQKQEIAGKQKEIKDLQIAIdsldskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEEL-------------EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 595 LEEQLTEGQIAANEALKKDLEgvisglqeylgtIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMR 674
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEE------------LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 675 KELAELESALQEQhevnaslQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNA 754
Cdd:COG1196 452 AELEEEEEALLEL-------LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 755 LGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLV--RPEEVAARVDELRRKLKLGTGEMNIHSP 832
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 833 SDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQM 912
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 913 ENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATA 992
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 993 ---ELTIAKDQLKSLhGTVmkiNQERAEELQEA-ERFSRKAAQAArDLTRAEAEIELL-QNLLRQKGEQFR 1058
Cdd:COG1196 765 lerELERLEREIEAL-GPV---NLLAIEEYEELeERYDFLSEQRE-DLEEARETLEEAiEEIDRETRERFL 830
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
443-1123 |
3.53e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.00 E-value: 3.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 443 EKKISAAQTRLSELHDEIEKAEQQI--L----RATEEFKQLEEAIQLKKISEAGkdLLYKQLSGRLQlvnKLRQEALDLE 516
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQLepLerqaEKAERYRELKEELKELEAELLL--LKLRELEAELE---ELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 517 LQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLE 596
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEEL-----------------ELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 597 EQLTEgqiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaENMRKE 676
Cdd:COG1196 316 ERLEE-----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE------EELEEL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 677 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALG 756
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 757 KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHspsdvl 836
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG-------FLEGVKAALLLAGLRGLAGAVAVLIG------ 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 837 gksladlqkqfseilarskWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFdkrqhEARIQQMENEI 916
Cdd:COG1196 532 -------------------VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF-----LPLDKIRARAA 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 917 HYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVfgldkelkklkkAVATSDKLATAELTI 996
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV------------TLAGRLREVTLEGEG 655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 997 AKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEmektgvgtgansqVLE 1076
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE-------------ELE 722
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 767956127 1077 IEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRREV 1123
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1321-2081 |
4.14e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.12 E-value: 4.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1400
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1401 LMTELeiekslkhhEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:TIGR02168 314 LERQL---------EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1481 ERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERN 1560
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1561 EDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLD------RQLGHKKEELHLLQG---SMVQAKADLQEALR-- 1629
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvKALLKNQSGLSGILGvlsELISVDEGYEAAIEaa 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1630 LGETE---VTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDML- 1705
Cdd:TIGR02168 543 LGGRLqavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLl 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1706 -------QLENHELQGLKLQHDQRVSELEKTQVAVLEEKLelenlqqisqqqKGEIEWQKQLLERdKREIERMTAESRAL 1778
Cdd:TIGR02168 623 ggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGGVIT------------GGSAKTNSSILER-RREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1779 QSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQ 1858
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1859 LQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1938
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1939 NKLKLVQQEMMFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEerwCESLEK 2018
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEELRELESKRSELRRE---LEELRE 922
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767956127 2019 TLSQTKRQLSEREQQLVEKSGELLALQK-EADSMRAdfslLRNQFLTERKKAEKQVASLKEALK 2081
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEA----LENKIEDDEEEARRRLKRLENKIK 982
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
55-250 |
3.11e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 89.61 E-value: 3.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 55 QVEIADENNMLLDYQDHKGADSHAGVRYITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSY 134
Cdd:COG4886 43 LSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSG 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 135 NLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQD-I 211
Cdd:COG4886 123 NQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDLPEpL 201
|
170 180 190
....*....|....*....|....*....|....*....
gi 767956127 212 SKLKPLQdliSLILVENPVVTLPHylqfTIFHLRSLESL 250
Cdd:COG4886 202 GNLTNLE---ELDLSGNQLTDLPE----PLANLTNLETL 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1536-2267 |
3.11e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.96 E-value: 3.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1536 LSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKeseVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQG 1615
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLV---LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1616 SMVQAKADLQEAlrlgETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQvvlrQMSKHK 1695
Cdd:TIGR02168 275 EVSELEEEIEEL----QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA----ELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1696 TELKNILDMLQLENHELQGLKLQHDQRVSELEKtqvAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAES 1775
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEE---QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1776 RALQScvECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENskmeqsnLEKLELNVRKLQQELDQLNRDKLSLHNDISAM 1855
Cdd:TIGR02168 424 EELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA-------LEELREELEEAEQALDAAERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1856 QQQLQEKREAVNSLQEELAN------------------------------------VQDHLNLAKQDLLHTTKHQDVLLS 1899
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALLKNqsglsgilgvlselisvdegyeaaieaalggrlqavVVENLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1900 -------EQTRLQKDISEWANRFEDCQ---KEEETKQQQLQVLQN------------EIEENKLKLVQQEMMF------- 1950
Cdd:TIGR02168 575 flpldsiKGTEIQGNDREILKNIEGFLgvaKDLVKFDPKLRKALSyllggvlvvddlDNALELAKKLRPGYRIvtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1951 ----------------QRLQKERESEEskLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCE 2014
Cdd:TIGR02168 655 vrpggvitggsaktnsSILERRREIEE--LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2015 SLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQ---LEKNL 2091
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldeLRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2092 LTINEDSERDSSLLSKEQKQENSCiQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMA---NQKDLERRQMEI 2168
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAAT-ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEallNERASLEEALAL 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2169 SDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENLPftmnegpfeEKLNFSQVHIMDEHWR 2248
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS---------EEYSLTLEEAEALENK 962
|
810
....*....|....*....
gi 767956127 2249 GEALREKLRHREDRLKAQL 2267
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
435-1119 |
5.86e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 5.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQlvnKLRQEALD 514
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE---ELESKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 595 LEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMR 674
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 675 KELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDaeanqlKEELEKVTRLTQLEQSALQAELEKERQAL--- 751
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE------GYEAAIEAALGGRLQAVVVENLNAAKKAIafl 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 752 -KNALGKAQFSEE---KEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEM 827
Cdd:TIGR02168 566 kQNELGRVTFLPLdsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGY 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 828 NIHSPSDVL---------GKSLADLQKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEAR 897
Cdd:TIGR02168 646 RIVTLDGDLvrpggvitgGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 898 -----MNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEkkKKLEDAKSQEQVFGL 972
Cdd:TIGR02168 726 rqisaLRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE--AQIEQLKEELKALRE 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 973 DKELKKLKKAvATSDKLATAELTIA--KDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLL 1050
Cdd:TIGR02168 804 ALDELRAELT-LLNEEAANLRERLEslERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1051 RQKGEQF-RLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTgsdnKGGFENVLEEIAEL 1119
Cdd:TIGR02168 883 ASLEEALaLLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
509-821 |
1.81e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.18 E-value: 1.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 509 RQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 588
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ---LRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 589 TEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 666
Cdd:TIGR02168 753 SKELTELEAEIEEleERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 667 AMDAENMRKELAE-LESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEanqlkEELEKVTRLTQLEQSALQAELE 745
Cdd:TIGR02168 833 IAATERRLEDLEEqIEELSEDIESLAAEIEELEELIEELESELEALLNERASL-----EEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767956127 746 KERQALKNALGKAQFSEEKEQEN-SELHAKLKHLQDdnNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLK 821
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRlEGLEVRIDNLQE--RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1800-2061 |
1.43e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1879
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1880 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERES 1959
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1960 EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSG 2039
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260
....*....|....*....|..
gi 767956127 2040 ELLALQKEADSMRADFSLLRNQ 2061
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEA 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1744-2268 |
2.90e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 2.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1744 QQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSN 1823
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1824 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTR 1903
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1904 LQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELT 1983
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE----EEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1984 DQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLA---LQKEADSMRADFSLLRN 2060
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAE---ADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2061 QFLTERKKAEKQVASLKEAL----------KIQRSQLEKNLLTINEdSERDSSLLSKEQKQENSCIQKEMATI--ELVAQ 2128
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKagratflpldKIRARAALAAALARGA-IGAAVDLVASDLREADARYYVLGDTLlgRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2129 DNHERARRLMKELNQMQYEYT------------ELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPE 2196
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTlegeggsaggslTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 2197 LPADLEAILERNENLEGELESLKENLPFTMNEGPFEEKLNFSQVHIMDEhwrgEALREKLRHREDRLKAQLR 2268
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE----PPDLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1319-1983 |
1.02e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 1.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1319 HNLENEVSRLEDIMQHLKSKKREerwMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNV 1398
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDE---LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1399 ESLmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAE-SELSCTKEKTKNAVEKFTDAKRSLLQTESDA 1477
Cdd:TIGR02168 389 AQL--ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEEL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1478 EELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLS------KKKEK--------- 1542
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSelisvdEGYEAaieaalggr 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1543 ----LTEELQKLQKDIEMAERNEDHHLQVLkeseVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELH-----LL 1613
Cdd:TIGR02168 547 lqavVVENLNAAKKAIAFLKQNELGRVTFL----PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyLL 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1614 QGSMV----QAKADLQEALRLGETEVTEKCNHIREVKSlleeLSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLR 1689
Cdd:TIGR02168 623 GGVLVvddlDNALELAKKLRPGYRIVTLDGDLVRPGGV----ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1690 QMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIE 1769
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1770 RMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1849
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1850 NDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanrfedCQKEEETKQQQL 1929
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE-------LREKLAQLELRL 931
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 1930 QVLQNEIEENKLKL-VQQEMMFQrlqkERESEESKLETSKVTLKEQQHQLEKELT 1983
Cdd:TIGR02168 932 EGLEVRIDNLQERLsEEYSLTLE----EAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1349-1938 |
1.03e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1349 KRQSEKEMEELHHN---IDDLLQEK----KSLE--CEVEELHRTVQKRQQQKDfidgnveSLMTELEIEKSLKHHEDIVD 1419
Cdd:COG1196 174 KEEAERKLEATEENlerLEDILGELerqlEPLErqAEKAERYRELKEELKELE-------AELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1420 EIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLR 1499
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1500 SLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKR 1579
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1580 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGEL 1659
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1660 NVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILD----------------MLQLENHE--------LQGL 1715
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaayeaaleaalaaALQNIVVEddevaaaaIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1716 KLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEk 1795
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR- 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1796 cdiWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN 1875
Cdd:COG1196 646 ---LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956127 1876 VQDHLNLAKQDLLHttkhqdvLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1938
Cdd:COG1196 723 EEALEEQLEAEREE-------LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1353-2163 |
1.11e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.42 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1353 EKEMEELHHNIDDLLQEKKSLECEVEELHR--TVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLK 1430
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1431 RRSELREADRLLAEAESELSCTKEKTKNAV-EKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLE 1509
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1510 QhkikqeeilkeinkivaakdsDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV 1589
Cdd:TIGR02169 343 R---------------------EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1590 TSQQQEMavldRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1669
Cdd:TIGR02169 402 NELKREL----DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1670 LTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVleEKLELENLQQISQQ 1749
Cdd:TIGR02169 478 YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAI--EVAAGNRLNNVVVE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1750 QKGEIEWQKQLLERdkREIERMT----AESRALQSCVECLSKEKE-----DLQEKCDIWEKKLAQ------------TKR 1808
Cdd:TIGR02169 556 DDAVAKEAIELLKR--RKAGRATflplNKMRDERRDLSILSEDGVigfavDLVEFDPKYEPAFKYvfgdtlvvedieAAR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1809 VLAAAEENSKMEQSNLEK-------------LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN 1875
Cdd:TIGR02169 634 RLMGKYRMVTLEGELFEKsgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1876 vqdhlnlAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRL-Q 1954
Cdd:TIGR02169 714 -------ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1955 KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWC-----------ESLEKTLSQT 2023
Cdd:TIGR02169 787 RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLkeqiksiekeiENLNGKKEEL 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2024 KRQLSEREQQLVEKSGELLALQKEADSMRADFSLLR---NQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSER 2100
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELErkiEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 2101 DSSLLSKEQKQEN-SCIQKEMATIELV---AQDNHERARRLMKEL----NQMQYEYTELKKQMANQKDLER 2163
Cdd:TIGR02169 947 PEEELSLEDVQAElQRVEEEIRALEPVnmlAIQEYEEVLKRLDELkekrAKLEEERKAILERIEEYEKKKR 1017
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
130-279 |
1.70e-13 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 70.95 E-value: 1.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 130 LNLSYNLIGKIEKLDKLL-KLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL 208
Cdd:pfam14580 24 LDLRGYKIPIIENLGATLdQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQEL 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 209 QDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDL 279
Cdd:pfam14580 104 GDLDPLASLKKLTFLSLLRNPVTNKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMFRSKQGKQLAKEI 174
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
255-1044 |
3.01e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 3.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 255 VTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNEL 334
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 335 LKQKTIELTRACQKQYELEQELAfyKIDAKFeplnyypsEYAEIDkapdespyigKSRYKRNMFATESYIIDSAQAVQIK 414
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIA--SLNNEI--------ERLEAR----------LERLEDRRERLQQEIEELLKKLEEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 415 KMEPDEQLRNDhmnlrghtpLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI--------QLKKI 486
Cdd:TIGR02168 434 ELKELQAELEE---------LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdslerlqeNLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 487 SEAGKDLLYKQ--LSGRLQLVNKLRQEALDLELQMEKQKQEIAGkQKEIKDLQIA---IDSLDSKDPKHSHMKAQKSGKE 561
Cdd:TIGR02168 505 SEGVKALLKNQsgLSGILGVLSELISVDEGYEAAIEAALGGRLQ-AVVVENLNAAkkaIAFLKQNELGRVTFLPLDSIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 562 QQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQL-------TEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQ 634
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 635 AQNEcrklrdEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEqhevnasLQQTQGDLSAYEAELEARLNL 714
Cdd:TIGR02168 664 GSAK------TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEEELEQLRKELEELSRQISA 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 715 RDAEANQLKEELEKVTRLTQLEQSALqAELEKERQALKNALGKAQFS-EEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 793
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKEL-TELEAEIEELEERLEEAEEElAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 794 nhlnhvvdglvrpeevaARVDELRRKL-KLGTGEMNIHSPSDVLGKSLADLQKQF---SEILARSKWERDEAQVRERKLQ 869
Cdd:TIGR02168 810 -----------------AELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELE 872
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 870 EEMALQQEKLATGQEEFRQAceralearmNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILA 949
Cdd:TIGR02168 873 SELEALLNERASLEEALALL---------RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 950 QLRElEKKKKLEDAKSQEQvfgldkelkklkkAVATSDKLATAELTIAKDQLKSLhGTVmkiNQERAEELQE-AERFSRK 1028
Cdd:TIGR02168 944 RLSE-EYSLTLEEAEALEN-------------KIEDDEEEARRRLKRLENKIKEL-GPV---NLAAIEEYEElKERYDFL 1005
|
810
....*....|....*.
gi 767956127 1029 AAQAArDLTRAEAEIE 1044
Cdd:TIGR02168 1006 TAQKE-DLTEAKETLE 1020
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1477-2076 |
3.21e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 3.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1477 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1556
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1557 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLgetevt 1636
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE------ 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1637 ekcnhIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLK 1716
Cdd:COG1196 374 -----LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1717 LQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRAlqscveclSKEKEDLQEKC 1796
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG--------VKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1797 DIWEKK--LAQTKRVLAAAEENSkMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELA 1874
Cdd:COG1196 521 GLAGAVavLIGVEAAYEAALEAA-LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1875 NVQDHLNLAKQDLLHTTKHQDVLLSEqtrlqkdiSEWANRFEDCQKEEETKQQQLQVLQNEIEEnklkLVQQEMMFQRLQ 1954
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGR--------TLVAARLEAALRRAVTLAGRLREVTLEGEG----GSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1955 KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwceslEKTLSQTKRQLSEREQQL 2034
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE------EALEEQLEAEREELLEEL 741
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 767956127 2035 VEKSGELLALQKEADSMRADFSLLRnqflTERKKAEKQVASL 2076
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELE----RELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
583-963 |
5.58e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 5.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 583 SRIAKETEEIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 660
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKEleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 661 DQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYEA---ELEARLNLRDAEANQLKEELEKVT-RLTQL 735
Cdd:TIGR02168 757 TELEAEIEELEERLEEAeEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLErRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 736 EQSALQAELEKERQALKNALGKAQFSEEKEQENsELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDE 815
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSE 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 816 LRRKLKLgtgemnihspsdvlgksladLQKQFSEILARskweRDEAQVRERKLQEEMALQQEKLATGQEEfrqaceraLE 895
Cdd:TIGR02168 913 LRRELEE--------------------LREKLAQLELR----LEGLEVRIDNLQERLSEEYSLTLEEAEA--------LE 960
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 896 ARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEEiqgltdlqLQEADEEKERILAQLRELEK-KKKLEDA 963
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPvNLAAIEE--------YEELKERYDFLTAQKEDLTEaKETLEEA 1022
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
430-953 |
1.11e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 430 RGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNKLR 509
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE----------AELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 510 QEALDLELQMEKQKQEIAGKQKEIKDLQiaidsldskdpkhshmkaqksgkeqqldimnKQYQQLESRLDEILSRIAKET 589
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELA-------------------------------AQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 590 EEIKDLEEQLTEGQIAANEALKKDLEgvisgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMD 669
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEE-----AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 670 AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQ 749
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 750 ALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNI 829
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 830 HSPsdvlGKSLADLQKQFSEILARSKwERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARI 909
Cdd:COG1196 656 GSA----GGSLTGGSRRELLAALLEA-EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 767956127 910 QQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRE 953
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1350-2034 |
1.15e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1350 RQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKhhEDIVDEIECIEKTLL 1429
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR--DKLTEEYAELKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1430 KRRSELREADRLLAEaeselscTKEKTKNAVEKFTDAKRSLlqtesdaEELERRAQETAVNLVKADQQLRSLQADAKDLE 1509
Cdd:TIGR02169 368 DLRAELEEVDKEFAE-------TRDELKDYREKLEKLKREI-------NELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1510 QHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV 1589
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1590 T---SQQQEMAVLDRQLGHKKEELHL---------LQGSMVQAKADLQEALRLGETEVTEKC-----NHIREVKSLLEEL 1652
Cdd:TIGR02169 514 EvlkASIQGVHGTVAQLGSVGERYATaievaagnrLNNVVVEDDAVAKEAIELLKRRKAGRAtflplNKMRDERRDLSIL 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1653 SfQKGELN-----VQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKtelknildMLQLENHELQ--------GLKLQH 1719
Cdd:TIGR02169 594 S-EDGVIGfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYR--------MVTLEGELFEksgamtggSRAPRG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1720 DQRVSELEKTQVAVLEEKLELENLQQISQQQkgEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIW 1799
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQS--ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLslhndisamQQQLQEKREAVNSLQEELANVQDH 1879
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEAR 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1880 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE- 1958
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDe 893
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956127 1959 --SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKtLSQTKRQLSEREQQL 2034
Cdd:TIGR02169 894 leAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1665-2220 |
1.39e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 1.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1665 ERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQvavleeKLELENLQ 1744
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ------AEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1745 QISQQQKGEIEwQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNL 1824
Cdd:COG1196 296 ELARLEQDIAR-LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1825 EKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRL 1904
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1905 QKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEmmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTD 1984
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1985 QKSKLDQVLSKVLAA--EERVRTLQEEERWCESLEKT-----------LSQTKRQLSEREQQLVEKSGELLALQKEADSM 2051
Cdd:COG1196 532 VEAAYEAALEAALAAalQNIVVEDDEVAAAAIEYLKAakagratflplDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2052 RADFSLLRNQFL--------------------TERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQ 2111
Cdd:COG1196 612 DARYYVLGDTLLgrtlvaarleaalrravtlaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2112 ENSCIQKEMATIELVAQDNHERARRLMKELNQMQYE-YTELKKQMANQKDLERRQMEISDAMRTLKSEVK-DEIRTSLKN 2189
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEeQLEAEREELLEELLEEEELLEEEALEELPEPPDlEELERELER 771
|
570 580 590
....*....|....*....|....*....|....*...
gi 767956127 2190 LNQFLPELPA-------DLEAILERNENLEGELESLKE 2220
Cdd:COG1196 772 LEREIEALGPvnllaieEYEELEERYDFLSEQREDLEE 809
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1339-2080 |
2.40e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.84 E-value: 2.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1339 KREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHH--ED 1416
Cdd:pfam15921 88 KDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmlED 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1417 IVDEIECIEKTLLKRRSELREADRLLAEAEsELSCTKEKTKNAVEkfTDAKRSLLQTESDA-EELERRAQETAVNLVKAD 1495
Cdd:pfam15921 168 SNTQIEQLRKMMLSHEGVLQEIRSILVDFE-EASGKKIYEHDSMS--TMHFRSLGSAISKIlRELDTEISYLKGRIFPVE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1496 QQLRSLQADAKD-----LEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERnedhhlQVLKE 1570
Cdd:pfam15921 245 DQLEALKSESQNkiellLQQHQDRIEQLISE-------HEVEITGLTEKASSARSQANSIQSQLEIIQE------QARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1571 SEVLLQakraELEKLKSQVTSQQQEMAVLDRQLGHKKEElhlLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLE 1650
Cdd:pfam15921 312 NSMYMR----QLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1651 ELSFQKGELNVQiserKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQ 1730
Cdd:pfam15921 385 DLHKREKELSLE----KEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1731 VAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRvl 1810
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN-- 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1811 aaAEENSKMEQSNLEKLELN-------VRKLQQELDQLNR--------------DKLSLHNDISAMQQQLQE----KREA 1865
Cdd:pfam15921 539 --EGDHLRNVQTECEALKLQmaekdkvIEILRQQIENMTQlvgqhgrtagamqvEKAQLEKEINDRRLELQEfkilKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1866 VNSLQEELANVQDhLNLAKQDLLHTTkhqdvllSEQTRLQKDIS----EWANRFEDCQKEEETKQQQLQVLQNEIEEnkl 1941
Cdd:pfam15921 617 DAKIRELEARVSD-LELEKVKLVNAG-------SERLRAVKDIKqerdQLLNEVKTSRNELNSLSEDYEVLKRNFRN--- 685
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1942 KLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQ----------LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 2011
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKH 765
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956127 2012 WCESLEKTLSQtkrqlsereqqlveksgELLALQKEADSMRADFSLLRNQfltERKKAEKqVASLKEAL 2080
Cdd:pfam15921 766 FLKEEKNKLSQ-----------------ELSTVATEKNKMAGELEVLRSQ---ERRLKEK-VANMEVAL 813
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1317-1844 |
3.15e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 3.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1317 EHHNLENEVSRLEDIMQHLKSKKREERwmrASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFidg 1396
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE---AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR--- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1397 nveslmTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESD 1476
Cdd:COG1196 307 ------LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1477 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1556
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1557 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMV----------QAKADLQE 1626
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavavligvEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1627 ALRLGETEVTEKCNHIREVKSLLEELSFQKGE------LNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN 1700
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1701 ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQS 1780
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 1781 CVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLEL-----------NVRKLQQELDQLNRD 1844
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEeealeelpeppDLEELERELERLERE 775
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-250 |
3.37e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 71.12 E-value: 3.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 83 ITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNkiski 162
Cdd:COG4886 32 LLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 163 EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQdiSKLKPLQDLISLILVENPVVTLPHylqfTIF 242
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPE----ELG 179
|
....*...
gi 767956127 243 HLRSLESL 250
Cdd:COG4886 180 NLTNLKEL 187
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
443-1060 |
2.48e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.56 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 443 EKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkISEAGKDllYKQLSGRLQlvnklRQEALDLELQMEKQ 522
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIELLEP------IRELAER--YAAARERLA-----ELEYLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 523 KQEIAGKQKEIKDLQIAIDSLDskdpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEIlsriakETEEIKDLEEqlteg 602
Cdd:COG4913 287 QRRLELLEAELEELRAELARLE----------AELERLEARLDALREELDELEAQIRGN------GGDRLEQLER----- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 603 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNE----CRKLRDEKETLLQRLTEVEQERDQLEIvamDAENMRKELA 678
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEA---ALRDLRRELR 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 679 ELESALqeqhevnASLQQTQGDLSAYE----AELEARLNLRDAEAN------QLKEE-------LEKV---TRLTQLeqs 738
Cdd:COG4913 423 ELEAEI-------ASLERRKSNIPARLlalrDALAEALGLDEAELPfvgeliEVRPEeerwrgaIERVlggFALTLL--- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 739 alqAELEKERQALK--NAL---GKAQFSEEKEQENSELHAKLkhlqDDNNLL-KQQLKD--FQNHLNHVvdgLVRPEEVA 810
Cdd:COG4913 493 ---VPPEHYAAALRwvNRLhlrGRLVYERVRTGLPDPERPRL----DPDSLAgKLDFKPhpFRAWLEAE---LGRRFDYV 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 811 --ARVDELRR-----------KLKLGTGEMNIHSPSD---VLGKS----LADLQKQfseiLARSKWERDEAQVRERKLQE 870
Cdd:COG4913 563 cvDSPEELRRhpraitragqvKGNGTRHEKDDRRRIRsryVLGFDnrakLAALEAE----LAELEEELAEAEERLEALEA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 871 EMALQQEKlatgqeefRQACERALEARMNF-DKRQHEARIQQMENEihyLQENLKSMEEIQGLTDlQLQEADEEKERILA 949
Cdd:COG4913 639 ELDALQER--------REALQRLAEYSWDEiDVASAEREIAELEAE---LERLDASSDDLAALEE-QLEELEAELEELEE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 950 QLRELEKK-----KKLEDAKSQEQvfgldkelkklkkavATSDKLATAELTIAKDQLKSLhgtvmkinQERAEELQEAER 1024
Cdd:COG4913 707 ELDELKGEigrleKELEQAEEELD---------------ELQDRLEAAEDLARLELRALL--------EERFAAALGDAV 763
|
650 660 670
....*....|....*....|....*....|....*.
gi 767956127 1025 FSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLE 1060
Cdd:COG4913 764 ERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1369-2011 |
4.38e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 68.92 E-value: 4.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1369 EKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEK--------SLKHHEDIVDEIECIEKTLLKRRSELREADR 1440
Cdd:TIGR00606 406 EAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKeilekkqeELKFVIKELQQLEGSSDRILELDQELRKAER 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1441 LLAEAE--SELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEI 1518
Cdd:TIGR00606 486 ELSKAEknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1519 LKEINKIVAAKDSdFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLL-------------QAKRAELEKL 1585
Cdd:TIGR00606 566 LGYFPNKKQLEDW-LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLssyedklfdvcgsQDEESDLERL 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1586 KSQVTSQQQEMAVLD----------RQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQ 1655
Cdd:TIGR00606 645 KEEIEKSSKQRAMLAgatavysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKR 724
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1656 KGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLK-LQHDQRVSElektQVAVL 1734
Cdd:TIGR00606 725 RDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvCLTDVTIME----RFQME 800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1735 EEKLELENLQQISQQQKGEIEWQKQLLERDKREIERmtaESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAE 1814
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQH---ELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1815 ENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKH- 1893
Cdd:TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYm 957
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1894 -------QDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK---------LKLVQQEMMFQRLQKER 1957
Cdd:TIGR00606 958 kdienkiQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKiqerwlqdnLTLRKRENELKEVEEEL 1037
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 1958 ESEESKLETSKVTLKEQQHQ-LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 2011
Cdd:TIGR00606 1038 KQHLKEMGQMQVLQMKQEHQkLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-280 |
6.31e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 66.88 E-value: 6.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKL 174
Cdd:COG4886 203 NLTNLEELDLS-----GNQLTDLpEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 175 NLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQP 254
Cdd:COG4886 278 DLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLN 357
|
170 180
....*....|....*....|....*.
gi 767956127 255 VTTQDRQEAFERFSLEEVERLERDLE 280
Cdd:COG4886 358 LLSLLLTLLLTLGLLGLLEATLLTLA 383
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1324-2153 |
1.32e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.30 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1324 EVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEV------------EELHRTVQKRQQQK 1391
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyldylklneERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1392 DFIDGNVESLMTELEI-EKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSL 1470
Cdd:pfam02463 251 EEIESSKQEIEKEEEKlAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1471 LQTESDAEELERRAQE----TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE 1546
Cdd:pfam02463 331 KKEKEEIEELEKELKEleikREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1547 LQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQE 1626
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1627 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRqmskHKTELKNILDMLQ 1706
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV----SATADEVEERQKL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1707 LENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLS 1786
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1787 KEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAV 1866
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1867 NSLQEELANVQdhLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQ 1946
Cdd:pfam02463 727 VQEAQDKINEE--LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1947 EMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQ 2026
Cdd:pfam02463 805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2027 LSEREQQLVEKSGELLALQKEadsmradfsLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLS 2106
Cdd:pfam02463 885 KDELESKEEKEKEEKKELEEE---------SQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 767956127 2107 KEQKQENSCIQKEMATIELV-------AQDNHERARRLMKELNQMQYEYTELKK 2153
Cdd:pfam02463 956 EEEEERNKRLLLAKEELGKVnlmaieeFEEKEERYNKDELEKERLEEEKKKLIR 1009
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1321-2179 |
1.98e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 66.61 E-value: 1.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHH---NIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGN 1397
Cdd:TIGR00606 212 LKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNrlkEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1398 VESLM--TELEIEKSLKHHEDIVDEIE----CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFT--DAKRS 1469
Cdd:TIGR00606 292 MEKVFqgTDEQLNDLYHNHQRTVREKErelvDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRarDSLIQ 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1470 LLQTESDAEELER-----RAQETAVNLVKADQQlRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLT 1544
Cdd:TIGR00606 372 SLATRLELDGFERgpfseRQIKNFHTLVIERQE-DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1545 EELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRaELEKLKSQVTSQQQEMAVLdrqlghkkeelhllqgSMVQAKADL 1624
Cdd:TIGR00606 451 KKQEELKFVIKELQQLEGSSDRILELDQELRKAER-ELSKAEKNSLTETLKKEVK----------------SLQNEKADL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1625 QEALRlGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDM 1704
Cdd:TIGR00606 514 DRKLR-KLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDR 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1705 LQLENHELQGLKLQHDQRVSELEKTQvAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVEC 1784
Cdd:TIGR00606 593 LAKLNKELASLEQNKNHINNELESKE-EQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1785 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1864
Cdd:TIGR00606 672 LTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1865 AVNSLQEELANVQDHLnlakqdllhttkhqdvllSEQTRLQKDISEWANRFEDCQKEEETKQQqlqvLQNEIEENKLKLV 1944
Cdd:TIGR00606 752 KLQKVNRDIQRLKNDI------------------EEQETLLGTIMPEEESAKVCLTDVTIMER----FQMELKDVERKIA 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1945 QQEmmfqrlqkereseeSKLETSKVTLKEQQhqLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTK 2024
Cdd:TIGR00606 810 QQA--------------AKLQGSDLDRTVQQ--VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2025 RQLSEREQQLVEKSGELLALQKEADSMradfsllrnqfLTERKKAEKQVASLKEALKiQRSQLEKNLLTINEDSERDSSL 2104
Cdd:TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSL-----------IREIKDAKEQDSPLETFLE-KDQQEKEELISSKETSNKKAQD 941
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 2105 LSKEQKQENSCIQKEMATIELVAQDNHERarrlmkelnQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEV 2179
Cdd:TIGR00606 942 KVNDIKEKVKNIHGYMKDIENKIQDGKDD---------YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
459-1076 |
2.01e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 2.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 459 EIEKAEQQILRATEEFKQLEEAiqlKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLElqmEKQKQEIAGKQKEIKDLQI 538
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEA---KKAEEERNNEEIRKFEEARMAHFARRQAAIKAE---EARKADELKKAEEKKKADE 1294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 539 AIDSLDSKDPKHSHMKAQKSGKEQQLdimNKQYQQLESRLDEILSRI--AKETEEIKDLEEQLTEGQIAANEALKKDLEG 616
Cdd:PTZ00121 1295 AKKAEEKKKADEAKKKAEEAKKADEA---KKKAEEAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 617 VISGLQEYLGTIKGQATQAQ--NECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKElAELESALQEQHEVNASL 694
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADEAK 1450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 695 QQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQ-LEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 773
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKkAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 774 KLKHLQDDNNLLKQQLKdfqnhlnhvVDGLVRPEEVaaRVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILAR 853
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKK---------ADELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 854 SKWERDEAQVRERKLQEEMALQQEKLATGQEEfRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLT 933
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 934 DLQLQEADEEKerilaqlRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSlhgtvmkiNQ 1013
Cdd:PTZ00121 1679 EAKKAEEDEKK-------AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE--------DK 1743
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956127 1014 ERAEELQEAERFSRKAAQAARDLTRAEAEIE-----LLQNLLRQKGEQFRLEMEKTGVGTGANSQVLE 1076
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRkekeaVIEEELDEEDEKRRMEVDKKIKDIFDNFANII 1811
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
419-1138 |
3.23e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 66.02 E-value: 3.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 419 DEQLRNDHMNLRGHTpldTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISeagKDLLYKQL 498
Cdd:pfam12128 229 DIQAIAGIMKIRPEF---TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRT---LDDQWKEK 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 499 SGRLqlvnKLRQEALDLELQMEKQKQEIAGKQKEI---KDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLE 575
Cdd:pfam12128 303 RDEL----NGELSAADAAVAKDRSELEALEDQHGAfldADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 576 SRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEylgtikgqatQAQNECRKLRDEKETLLQRLTE 655
Cdd:pfam12128 379 RRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELRE----------QLEAGKLEFNEEEYRLKSRLGE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 656 VEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEA---ELEARLNLRDAEANQLKEELEKVTRL 732
Cdd:pfam12128 449 LKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKrrdQASEALRQASRRLEERQSALDELELQ 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 733 TQLEQSALQAELEKERQALKNALGKAQFSEekeqensELHAKLKHLQDDNNLLKQQLKDFQNHLNhvVDGLVRPEEVAAR 812
Cdd:pfam12128 529 LFPQAGTLLHFLRKEAPDWEQSIGKVISPE-------LLHRTDLDPEVWDGSVGGELNLYGVKLD--LKRIDVPEWAASE 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 813 vDELRRKLklgtgemnihspsDVLGKSL---ADLQKQFSEILARSKWERDEAQVRE---RKLQEEMALQQEKLATGQEEF 886
Cdd:pfam12128 600 -EELRERL-------------DKAEEALqsaREKQAAAEEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQSE 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 887 RQACERALEARmnfdKRQHEARIQQMENEIHYLQENLKSMEEIQgltDLQLQEADEEKeriLAQLRELEKKKKLEDAKSQ 966
Cdd:pfam12128 666 KDKKNKALAER----KDSANERLNSLEAQLKQLDKKHQAWLEEQ---KEQKREARTEK---QAYWQVVEGALDAQLALLK 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 967 EQVFGLDKELKKLKKAVATS-----DKLATAELTIAK--DQLKSLHGTVMKINQERAEELQ----EAERFSRKAAQAARD 1035
Cdd:pfam12128 736 AAIAARRSGAKAELKALETWykrdlASLGVDPDVIAKlkREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQ 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1036 LTRAEAEIELLQNLLRQKGEQFRLEMEKTGVGTGANSQVLeiEKLNETMERQRTEIARLQNV-LDLTGSDNKGGFENVLE 1114
Cdd:pfam12128 816 LSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQ--VRLSENLRGLRCEMSKLATLkEDANSEQAQGSIGERLA 893
|
730 740
....*....|....*....|....
gi 767956127 1115 EIAELRREVSYQNDYISSMADPFK 1138
Cdd:pfam12128 894 QLEDLKLKRDYLSESVKKYVEHFK 917
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
515-799 |
3.24e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 3.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 LELQMEKQKQEIAgKQKEIKDLQIAI--DSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEI 592
Cdd:TIGR02168 205 LERQAEKAERYKE-LKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 593 KDLEEQLTEGQIaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIvamDAEN 672
Cdd:TIGR02168 284 EELQKELYALAN-----EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE---ELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 673 MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELE----KVTRLTQLEQSALQAELEKER 748
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErledRRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 767956127 749 QALKNALG-KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHV 799
Cdd:TIGR02168 436 KELQAELEeLEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1773-2101 |
6.02e-10 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 64.92 E-value: 6.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1773 AESRALQScVECLSKEKEDLQEKCDIWEKKLAQT-KRVLAAAEENSKME--QSNLEKLELN-----------VRKLQQEL 1838
Cdd:PLN02939 150 ARLQALED-LEKILTEKEALQGKINILEMRLSETdARIKLAAQEKIHVEilEEQLEKLRNEllirgateglcVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1839 DQLNRDKLSLHNDISAMQQQLQEKREAVNSLqeelanvqdhLNLAKQDLLHTTKHQDvLLSEQTRLQKDISEWANRFEDC 1918
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVAETEERV----------FKLEKERSLLDASLRE-LESKFIVAQEDVSKLSPLQYDC 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1919 QKEE-ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEE----SKLETSKVTLKEQQHQLEKELTDQKSKldQVL 1993
Cdd:PLN02939 298 WWEKvENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKeanvSKFSSYKVELLQQKLKLLEERLQASDH--EIH 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1994 SKVLAAEERVRTLQeeerwcESLEKTLSQTKRQlsereqqlveksgellALQKEADSMRADF----SLLRNQFLTERKKA 2069
Cdd:PLN02939 376 SYIQLYQESIKEFQ------DTLSKLKEESKKR----------------SLEHPADDMPSEFwsriLLLIDGWLLEKKIS 433
|
330 340 350
....*....|....*....|....*....|..
gi 767956127 2070 EKQVASLKEALKIQRSQLEKNLLTINEDSERD 2101
Cdd:PLN02939 434 NNDAKLLREMVWKRDGRIREAYLSCKGKNERE 465
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
629-959 |
7.89e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 7.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 629 KGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYE-- 705
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEqe 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 706 --------AELEARLNLRDAEANQLKEELEKVTRLTQLEQ----SALQAELEKERQALKNALGKAQFSEEKEQENSE-LH 772
Cdd:TIGR02169 753 ienvkselKELEARIEELEEDLHKLEEALNDLEARLSHSRipeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEyLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 773 AKLKHLQDDNNLLKQQLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLK-LGTGEMNIHSPSDVLGKSLADLQKQFSEIl 851
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIE---NLNGKKEELEEELEELEAALRdLESRLGDLKKERDELEAQLRELERKIEEL- 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 852 arsKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACEralEARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEE-- 928
Cdd:TIGR02169 909 ---EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE---IPEEELSLEDVQAELQRVEEEIRALEPvNMLAIQEye 982
|
330 340 350
....*....|....*....|....*....|....*
gi 767956127 929 --IQGLTDLQLQEA--DEEKERILAQLRELEKKKK 959
Cdd:TIGR02169 983 evLKRLDELKEKRAklEEERKAILERIEEYEKKKR 1017
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
275-955 |
8.66e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 64.68 E-value: 8.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 275 LERDLEKKMIETEELKSKQTRFLEEIKNQDKLnksLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELtracqKQYELEQ 354
Cdd:TIGR00606 442 IELKKEILEKKQEELKFVIKELQQLEGSSDRI---LELDQELRKAERELSKAEKNSLTETLKKEVKSL-----QNEKADL 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 355 ELAFYKIDAKFEPLNYYPSEYAEI-----DKA-PDESPYIGKSRYKRNM------FATESYIIDSAQAVQIKKMEPDEQL 422
Cdd:TIGR00606 514 DRKLRKLDQEMEQLNHHTTTRTQMemltkDKMdKDEQIRKIKSRHSDELtsllgyFPNKKQLEDWLHSKSKEINQTRDRL 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 423 RNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEI---EKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLS 499
Cdd:TIGR00606 594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 500 GRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSH-MKAQKSGKEQQLDIMNKQYQQLESRL 578
Cdd:TIGR00606 674 DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDeMLGLAPGRQSIIDLKEKEIPELRNKL 753
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 579 DEILSRIAKETEEIKDLEEQLteGQIAANEALKKDLE---GVISGLQEYLGTIKGQATQAQNECRKLrDEKETLLQRLTE 655
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLL--GTIMPEEESAKVCLtdvTIMERFQMELKDVERKIAQQAAKLQGS-DLDRTVQQVNQE 830
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 656 VEQERDQLEIVAMDAENMRKelaelesALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVtrltql 735
Cdd:TIGR00606 831 KQEKQHELDTVVSKIELNRK-------LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV------ 897
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 736 eQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEvaarvDE 815
Cdd:TIGR00606 898 -QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD-----DY 971
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 816 LRRKlklgtgEMNIHSPSDVLGKSlADLQKQFSEILARSKWERDEAQVRERKLQEEMALQ--QEKLATGQEEFRQacera 893
Cdd:TIGR00606 972 LKQK------ETELNTVNAQLEEC-EKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRkrENELKEVEEELKQ----- 1039
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 894 learmnFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELE 955
Cdd:TIGR00606 1040 ------HLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1800-2033 |
1.04e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.86 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1879
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1880 LN--LAKQDLLHTTKHQDVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEEnklklvqqemmFQRLQKER 1957
Cdd:COG4942 106 LAelLRALYRLGRQPPLALLLS-----PEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 1958 ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQ 2033
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA---EELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1787-2222 |
1.05e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.91 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1787 KEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNV---RKLQQELDQLNRDKLSLHNDISAMQQQLQEKR 1863
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLeehEERREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1864 EAVNSLQEELANVQDHLNlakqDLLHTTKHQDvllSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKL 1943
Cdd:PRK02224 279 EEVRDLRERLEELEEERD----DLLAEAGLDD---ADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1944 VQQEMMFQRLQKERESEESKLETSKVTL---KEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTL 2020
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVedrREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2021 SQTKRQLSEReqqlVEKSGELLAL-------QKEADSMRADFsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKNLLT 2093
Cdd:PRK02224 432 EATLRTARER----VEEAEALLEAgkcpecgQPVEGSPHVET-------IEEDRERVEELEAELEDLEEEVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2094 INEDSERDSSLLSKEQKQENscIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMR 2173
Cdd:PRK02224 501 AEDLVEAEDRIERLEERRED--LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 767956127 2174 TLKSEVKDEIrtslknlnqflpELPADLEAILERNENLEGELESLKENL 2222
Cdd:PRK02224 579 SKLAELKERI------------ESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1316-1910 |
1.99e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1316 PEHHNLENEVSRLEDIMQHLKSKKR--EERWMRASKRQSEKEMEELHHN--IDDLLQEKKSLECEVEELH---RTVQKRQ 1388
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEelEEQLETLRSKVAQLELQIASLNneIERLEARLERLEDRRERLQqeiEELLKKL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1389 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTkEKTKNAVEKFTDAKR 1468
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVK 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1469 SLLQTESD--------AEELERRAQ-ETAVNLVKAD--QQLRSLQADAKDLEQHKIKQEEI---------------LKEI 1522
Cdd:TIGR02168 510 ALLKNQSGlsgilgvlSELISVDEGyEAAIEAALGGrlQAVVVENLNAAKKAIAFLKQNELgrvtflpldsikgteIQGN 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1523 NKIVAAKDSDFQCLSKKKEKLTEELQK--------------LQKDIEMAERNEDHHLQVLKESEVL-------------- 1574
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVrpggvitggsaktn 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1575 --LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEEL 1652
Cdd:TIGR02168 670 ssILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1653 SFQKGELNVQISERKTQLTlikqeiekeeenlqvvlrQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVA 1732
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEE------------------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1733 VLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAEsralqscVECLSKEKEDLQEKCDIWEKKLAQTKRVLAA 1812
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELIEELESELEALLNERAS 884
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1813 AEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN-VQDHLNLAKQDLLHTT 1891
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIE 964
|
650
....*....|....*....
gi 767956127 1892 KHQDVLLSEQTRLQKDISE 1910
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1800-2180 |
2.21e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 2.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNR------------------DKLSLHNDISAMQQQLQE 1861
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyegyellkEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1862 KREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS-EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIeenk 1940
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL---- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1941 lklvqqemmfQRLQKERESEESKLEtskvtlkeqqhQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEerwCESLEKTL 2020
Cdd:TIGR02169 325 ----------AKLEAEIDKLLAEIE-----------ELEREIEEERKRRDKLTEEYAELKEELEDLRAE---LEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2021 SQTKRQLSEREQQLVEKSGELLALQKEADSMradfsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKnlltiNEDSER 2100
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRL-----------QEELQRLSEELADLNAAIAGIEAKINE-----LEEEKE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2101 DSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQmanQKDLERRQMEISDAMRTLKSEVK 2180
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ---ARASEERVRGGRAVEEVLKASIQ 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-959 |
2.78e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 2.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 259 DRQEAFERFSLEEVERLERDLEKKmIETEELKSKqtrfLEEIKNQDKLNKSLKEEAMLqkqscEELKSDLNTKNELLKQK 338
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKA-ERYQALLKE----KREYEGYELLKEKEALERQK-----EAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 339 TIELTRACQKQYELEQELAfyKIDAKFEPLNyyPSEYAEIdKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQIKKMEP 418
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLE--ELNKKIKDLG--EEEQLRV-KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 419 DEQLRNdhmnlrgHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQL-EEAIQLKKISEAGKDLLY-- 495
Cdd:TIGR02169 332 DKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETrDELKDYREKLEKLKREINel 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 496 -KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSkdpKHSHMKAQKSGKEQQLDIMNKQYQQL 574
Cdd:TIGR02169 405 kRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW---KLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 575 ESRLDEILSRIAkETEEIKDLEEQLTEGQIAANEALKKDLEGVIsGLQEYLGTIKGQ----------------------- 631
Cdd:TIGR02169 482 EKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLKASIQGVH-GTVAQLGSVGERyataievaagnrlnnvvveddav 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 632 ATQAQNECRKLRDEKETLLQrLTEVEQERDQLEIVAMDA--------------------------------ENMRKELAE 679
Cdd:TIGR02169 560 AKEAIELLKRRKAGRATFLP-LNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvediEAARRLMGK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 680 LESALQEQHEVNASLQQTQGDLSAYEAELEARLNLrdAEANQLKEELEKVTRltqlEQSALQAELEKERQALKnalgkaq 759
Cdd:TIGR02169 639 YRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEP--AELQRLRERLEGLKR----ELSSLQSELRRIENRLD------- 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 760 fseEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdglvrpEEVAARVDELRRKLKLGTGEMnihspsDVLGKS 839
Cdd:TIGR02169 706 ---ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL----------EELEEDLSSLEQEIENVKSEL------KELEAR 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 840 LADLQKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATgQEEFRQACERALEARmNFDKRQHEARIQQMENEIHY 918
Cdd:TIGR02169 767 IEELEEDLHKLeEALNDLEARLSHSRIPEIQAELSKLEEEVSR-IEARLREIEQKLNRL-TLEKEYLEKEIQELQEQRID 844
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 767956127 919 LQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKK 959
Cdd:TIGR02169 845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1415-1995 |
2.97e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.35 E-value: 2.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1415 EDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKA 1494
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1495 DQQLRSLQADAKDLEQHKIKQEEILKEIN-------KIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDH---- 1563
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLteikkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknk 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1564 ---------HLQVLKESEVLLQAKRAELEK----LKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA--- 1627
Cdd:TIGR04523 196 llklelllsNLKKKIQKNKSLESQISELKKqnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqke 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1628 LRLGETEVTEKCNHIREVKSLLEELSFQK-----GELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN-- 1700
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNse 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1701 -----ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAES 1775
Cdd:TIGR04523 356 senseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1776 RALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAM 1855
Cdd:TIGR04523 436 IKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1856 QQQLQEKREAVNSLQEELANVQDHLNLAKQDL--LHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1933
Cdd:TIGR04523 516 TKKISSLKEKIEKLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 1934 NEIEENKLKLVQQEMMFQRLQKERES---EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSK 1995
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKakkENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
510-757 |
4.44e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.93 E-value: 4.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 510 QEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKET 589
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----------LKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 590 EEIKDLEEQLtegqiaanEALKKDLEGVI-----SGLQEYLGTIKGQ--ATQAQNECRKLRDEKETLLQRLTEVEQERDQ 662
Cdd:COG4942 90 KEIAELRAEL--------EAQKEELAELLralyrLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 663 LEIVAMDAENMRKELAELESALQEQHevnASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL-TQLEQSALQ 741
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER---AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALiARLEAEAAA 238
|
250
....*....|....*.
gi 767956127 742 AELEKERQALKNALGK 757
Cdd:COG4942 239 AAERTPAAGFAALKGK 254
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-779 |
4.53e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 4.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRAtEEFKqleeAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEAlDLEL 517
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKA-ERYQ----ALLKEKREYEGYELLKEKEALERQKEAIERQLA-SLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 518 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkhshmkAQKSGKEQQLDImNKQYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKK--------IKDLGEEEQLRV-KEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 598 QLTEGqiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQE----RDQLEIVAMDAENM 673
Cdd:TIGR02169 323 RLAKL-----EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEfaetRDELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 674 RKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRltQLEQsaLQAELEKERQALKN 753
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW--KLEQ--LAADLSKYEQELYD 473
|
330 340
....*....|....*....|....*..
gi 767956127 754 ALGK-AQFSEEKEQENSELHAKLKHLQ 779
Cdd:TIGR02169 474 LKEEyDRVEKELSKLQRELAEAEAQAR 500
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
460-900 |
7.70e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 7.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 460 IEKAEQQILRATEEFKQLEEaiQLKKIseagkDLLYKQLSGRLQLVNKLRQEALD-LELQMEKQKQEIAGKQKEIKDLQI 538
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEE--NIERL-----DLIIDEKRQQLERLRREREKAERyQALLKEKREYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 539 AIDSLDskdpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL--EEQLT-EGQIAANEALKKDLE 615
Cdd:TIGR02169 238 QKEAIE----------RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRvKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 616 GVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKELAELESALQEqheVNASLQ 695
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT---EEYAELKEELEDLRAELEE---VDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 696 QTQGDLSAYEAELEarlnlrdaeanQLKEELEKVTRltqlEQSALQAELEKerqalknalgkaqfseeKEQENSELHAKL 775
Cdd:TIGR02169 382 ETRDELKDYREKLE-----------KLKREINELKR----ELDRLQEELQR-----------------LSEELADLNAAI 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 776 KHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDELRRKLKlgtgemNIHSPSDVLGKSLADLQKQFSEILARSK 855
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKL---EQLAADLSKYEQELY------DLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 767956127 856 WERDEaqVRERKLQEEMALQQEKLATGQ--------EEFRQACERALEARMNF 900
Cdd:TIGR02169 501 ASEER--VRGGRAVEEVLKASIQGVHGTvaqlgsvgERYATAIEVAAGNRLNN 551
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1357-2221 |
1.38e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 60.37 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1357 EELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDgnveslmteleiekslkhheDIVDEIECIEKTLLKRRSELR 1436
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELII--------------------DLEELKLQELKLKEQAKKALE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1437 EADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQE 1516
Cdd:pfam02463 212 YYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1517 EILKEINKIVAAK-DSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ----VTS 1591
Cdd:pfam02463 292 AKEEEELKSELLKlERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLqeklEQL 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1592 QQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSfQKGELNVQISERKTQLT 1671
Cdd:pfam02463 372 EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE-EEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1672 LIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQK 1751
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1752 GEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNV 1831
Cdd:pfam02463 531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1832 RKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQE----ELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKD 1907
Cdd:pfam02463 611 ATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKgvslEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1908 ISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEM----MFQRLQKERESEESKLETSKVTLKEQQHQLEKELT 1983
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQdkinEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1984 DQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL 2063
Cdd:pfam02463 771 LKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2064 TERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQ 2143
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEIL 930
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956127 2144 MQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFlpelpADLEAILERNENLEGELESLKEN 2221
Cdd:pfam02463 931 LKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAI-----EEFEEKEERYNKDELEKERLEEE 1003
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1336-2037 |
2.72e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.60 E-value: 2.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1336 KSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHE 1415
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1416 DIVDEIECIEKTLLKRRSEL---READRLLAEAESelsctkektknavekftdakrsLLQTESDAEELERRAQETAVNLV 1492
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERInraRKAAPLAAHIKA----------------------VTQIEQQAQRIHTELQSKMRSRA 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1493 KADQQLRSLQADAKDLEQHKIKQEEILKE--INKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEmaernedhhlqVLKE 1570
Cdd:TIGR00618 325 KLLMKRAAHVKQQSSIEEQRRLLQTLHSQeiHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKT-----------TLTQ 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1571 SEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALrlgeTEVTEKCNHIREVKSLLE 1650
Cdd:TIGR00618 394 KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTA----QCEKLEKIHLQESAQSLK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1651 ELSFQKGelnvqiserktqltlikqeiekeeeNLQVVLRQMSKHKTELKNILDMLQLENHELQGLKL---QHDQRVSELE 1727
Cdd:TIGR00618 470 EREQQLQ-------------------------TKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIhpnPARQDIDNPG 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1728 KTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEkcdiwekklaQTK 1807
Cdd:TIGR00618 525 PLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN----------ITV 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1808 RVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLnrdklslhnDISAMQQQLQEKREavnslQEELANVQDHLNLAKQDL 1887
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQ---------DVRLHLQQCSQELA-----LKLTALHALQLTLTQERV 660
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1888 LHT---TKHQDVLLSEQTRLQKDISEWANRFEDCQKEE-ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESK 1963
Cdd:TIGR00618 661 REHalsIRVLPKELLASRQLALQKMQSEKEQLTYWKEMlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDA 740
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767956127 1964 LETSkvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEK 2037
Cdd:TIGR00618 741 LNQS---LKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1580-1940 |
3.34e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 3.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1580 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEkcnHIREVKSLLEELSFQKGEL 1659
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE---LLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1660 NvQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTEL-KNILDMLQLENHELQGlklqhdqrvsELEKTQVAVLEEKL 1738
Cdd:TIGR02169 247 A-SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEA----------EIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1739 ELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSK 1818
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1819 MEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLlhttkhqDVLL 1898
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-------SKYE 468
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 767956127 1899 SEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK 1940
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
438-660 |
5.48e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 5.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeaiqlKKISEAGKDLlyKQLSGRLqlvNKLRQEALDLEL 517
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----RRIAALARRI--RALEQEL---AALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 518 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDF---LDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956127 598 QLT------EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 660
Cdd:COG4942 168 ELEaeraelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
435-1085 |
6.29e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 6.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 435 LDTQLEDKEKK-----ISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnklr 509
Cdd:PRK02224 192 LKAQIEEKEEKdlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLE--------------------------- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 510 qealdlelqmekqkqEIAGKQKEIKDLQIAIDSLDSKdpkhshmkaqKSGKEQQLDIMNKQYQQLESRLDEILSRIAKET 589
Cdd:PRK02224 245 ---------------EHEERREELETLEAEIEDLRET----------IAETEREREELAEEVRDLRERLEELEEERDDLL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 590 EEIkdleeQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMD 669
Cdd:PRK02224 300 AEA-----GLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE---SE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 670 AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELekvtrltqleqsalqAELEKERQ 749
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE---------------AELEATLR 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 750 ALKNALGKAQ----------------------FSEEKEQENSELHAKLkhlqddnnllkQQLKDFQNHLNHVVDGLVRPE 807
Cdd:PRK02224 437 TARERVEEAEalleagkcpecgqpvegsphveTIEEDRERVEELEAEL-----------EDLEEEVEEVEERLERAEDLV 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 808 EVAARVDELRRKLKLGTGEMNIHSPS-DVLGKSLADLQKQFSEILARSKWERDEAQvrerKLQEEMALQQEKLATGQEEf 886
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETiEEKRERAEELRERAAELEAEAEEKREAAA----EAEEEAEEAREEVAELNSK- 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 887 RQACERALEARMNFDKRQheARIQQMENEIHYLQENLKSMEEIQgltdlqlqeaDEEKERiLAQLRelEKKKKLEDAKSQ 966
Cdd:PRK02224 581 LAELKERIESLERIRTLL--AAIADAEDEIERLREKREALAELN----------DERRER-LAEKR--ERKRELEAEFDE 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 967 EQVFGLDKELKKLKKAVATSDKlATAELTIAKDQLKSLHGTVmKINQERAEELQEaerfsRKAAQAAR--DLTRAEAEIE 1044
Cdd:PRK02224 646 ARIEEAREDKERAEEYLEQVEE-KLDELREERDDLQAEIGAV-ENELEELEELRE-----RREALENRveALEALYDEAE 718
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 767956127 1045 LLQNLLRqkgeQFRLEMEKTGVGTgansqvLEIeKLNETME 1085
Cdd:PRK02224 719 ELESMYG----DLRAELRQRNVET------LER-MLNETFD 748
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
840-1626 |
6.37e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 6.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 840 LADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEA------------RMNFDKRQHEA 907
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaneisRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 908 RIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSD 987
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 988 KL------ATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQaaRDLTRAEAEIELLQNLLRQKGEQFRLEM 1061
Cdd:TIGR02168 390 QLelqiasLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1062 EktgvgtgansqvlEIEKLNETMERQRTEIARLQNVLDLTGSDnKGGFENVLEEIAELRREVSYQNDYISSMADPFKRRG 1141
Cdd:TIGR02168 468 E-------------ELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1142 YWyfmppppsskvsshSSQATKDSGVGLKYSAStpvrkprPGQQDGKEG--SQPPPASGYWVYSPIRSGLHKLFPSRDAD 1219
Cdd:TIGR02168 534 GY--------------EAAIEAALGGRLQAVVV-------ENLNAAKKAiaFLKQNELGRVTFLPLDSIKGTEIQGNDRE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1220 S--GGDSQEESELDDQEEPPFVPPP-GYMMYTVLPDGSpVPQGMALYAPPPPLPNNSRP----LTPGTVVYGpppagapm 1292
Cdd:TIGR02168 593 IlkNIEGFLGVAKDLVKFDPKLRKAlSYLLGGVLVVDD-LDNALELAKKLRPGYRIVTLdgdlVRPGGVITG-------- 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1293 vyGPPPPNFSIpfipmgvlhcnvpehHNLENEVSRLedimqhlkskkreerwmraskrqsEKEMEELHHNIDDLLQEKKS 1372
Cdd:TIGR02168 664 --GSAKTNSSI---------------LERRREIEEL------------------------EEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1373 LECEVEELhrTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCT 1452
Cdd:TIGR02168 703 LRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1453 KEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVaakdsd 1532
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI------ 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1533 fqclskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHL 1612
Cdd:TIGR02168 855 --------ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
810
....*....|....
gi 767956127 1613 LQGSMVQAKADLQE 1626
Cdd:TIGR02168 927 LELRLEGLEVRIDN 940
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
539-770 |
7.15e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.15 E-value: 7.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 539 AIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQiAANEALKKDLEGVI 618
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE-AEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 619 SGLQE------YLGTIKGQATQAqnecrklrdekeTLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQhevNA 692
Cdd:COG3883 93 RALYRsggsvsYLDVLLGSESFS------------DFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAK---LA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956127 693 SLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSE 770
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1582-2232 |
7.56e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.21 E-value: 7.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1582 LEKLKSQVTSQQQEMAvlDRQLGHKKEELHLLQGSMvqakaDLQEALRLGETEVTEKCNHIREVKSLLEELsfqKGELNV 1661
Cdd:pfam15921 80 LEEYSHQVKDLQRRLN--ESNELHEKQKFYLRQSVI-----DLQTKLQEMQMERDAMADIRRRESQSQEDL---RNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1662 QISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLqLENHELQGLKLQHDQRVSELEKTQVAvleeklelE 1741
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSIL-VDFEEASGKKIYEHDSMSTMHFRSLG--------S 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1742 NLQQISQQQKGEIEWQKQLLERDKREIERMTAESralQSCVECLskekedLQEKCDIWEKKLAQTKRVLAAAEENSKMEQ 1821
Cdd:pfam15921 221 AISKILRELDTEISYLKGRIFPVEDQLEALKSES---QNKIELL------LQQHQDRIEQLISEHEVEITGLTEKASSAR 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1822 SNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQ-EKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSE 1900
Cdd:pfam15921 292 SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRsELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1901 QTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNE-------IEENKLKLVQQEMMFQRLQ---KERESE-ESKLETSKV 1969
Cdd:pfam15921 372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEallKAMKSEcQGQMERQMA 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1970 TLKEQQHQLEK--ELTDQKSKLDQVLSKVlaaeerVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKe 2047
Cdd:pfam15921 452 AIQGKNESLEKvsSLTAQLESTKEMLRKV------VEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS- 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2048 adsmRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENScIQKEMATIElva 2127
Cdd:pfam15921 525 ----RVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGA-MQVEKAQLE--- 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2128 qdnherarrlmKELNQMQYEYTELKKqMANQKDLERRQME--ISD-----------------AMRTLKSEvKDEIRTSLK 2188
Cdd:pfam15921 597 -----------KEINDRRLELQEFKI-LKDKKDAKIRELEarVSDlelekvklvnagserlrAVKDIKQE-RDQLLNEVK 663
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 767956127 2189 NLNQFLPELPADLEAILERNENLEGELESLKENLPFTMNEGPFE 2232
Cdd:pfam15921 664 TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSE 707
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
441-758 |
8.49e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 8.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkiseagkdllykqlsgrlqlvnklRQEALDLELQME 520
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE-----------------------------RREALQRLAEYS 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 521 KQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLT 600
Cdd:COG4913 658 WDEIDVASAEREIAELEAELERLDASSDDLAAL-------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 601 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQA------QNECRKLRDEKETLLQRLT-------------------- 654
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERelrenlEERIDALRARLNRAEEELEramrafnrewpaetadldad 810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 655 -----EVEQERDQLE----------IVAMDAENMRKELAELESALQEQ--------HEVNASLQQTQ-GDLSAYEAELEA 710
Cdd:COG4913 811 leslpEYLALLDRLEedglpeyeerFKELLNENSIEFVADLLSKLRRAireikeriDPLNDSLKRIPfGPGRYLRLEARP 890
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 767956127 711 RlnlRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKA 758
Cdd:COG4913 891 R---PDPEVREFRQELRAVTSGASLFDEELSEARFAALKRLIERLRSE 935
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1809-2050 |
1.03e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 56.76 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1809 VLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLL 1888
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1889 HTTKHQ----------DVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKlklvqqemmfqRLQKERE 1958
Cdd:COG3883 90 ERARALyrsggsvsylDVLLG-----SESFSDFLDRLSALSKIADADADLLEELKADKAELE-----------AKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1959 SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKS 2038
Cdd:COG3883 154 AKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250
....*....|..
gi 767956127 2039 GELLALQKEADS 2050
Cdd:COG3883 234 AAAAAAAAAAAS 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
438-893 |
1.05e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.47 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDL 515
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALeaELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 516 ELQMEKQKQEIAGKQKEIKDLqiaidsldskdpkhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 595
Cdd:COG4717 162 EEELEELEAELAELQEELEEL----------------LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 596 EEQLTEGQiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQnecrkLRDEKETLLQRLTEVEQERdqLEIVAMDAENMRK 675
Cdd:COG4717 226 EEELEQLE---NELEAAALEERLKEARLLLLIAAALLALLG-----LGGSLLSLILTIAGVLFLV--LGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 676 ELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKV-TRLTQLEQSALQAELEKERQALKNA 754
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELqELLREAEELEEELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 755 LGKAQFSEEKE-QENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVrPEEVAARVDELRRKLKLGTGEMnihsps 833
Cdd:COG4717 376 LAEAGVEDEEElRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEEL------ 448
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 834 DVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQ-EEMALQQEKLATGQEEFRQACERA 893
Cdd:COG4717 449 EELREELAELEAELEQLEEDGELAELLQELEELKAElRELAEEWAALKLALELLEEAREEY 509
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1354-2210 |
1.28e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1354 KEMEEL--HHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESL----MTELEIEKSLKHHEDIVDEIECIEKT 1427
Cdd:PTZ00121 1027 EKIEELteYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYkdfdFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1428 LLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSllqTESDAEELERRAQET-AVNLVKADQQLRSLQADAK 1506
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA---EDAKRVEIARKAEDArKAEEARKAEDAKKAEAARK 1183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1507 DLEQHKIKQEEILKEINKIVAAKDSDfqclskkKEKLTEELQKLQ--KDIEMAERNEdhhlQVLKESEvllQAKRAELEK 1584
Cdd:PTZ00121 1184 AEEVRKAEELRKAEDARKAEAARKAE-------EERKAEEARKAEdaKKAEAVKKAE----EAKKDAE---EAKKAEEER 1249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1585 LKSQVTSQQQEMAV--LDRQLGHKKEELHllQGSMVQAKADLQEALRLGETEVTEKCNHIR----------EVKSLLEEL 1652
Cdd:PTZ00121 1250 NNEEIRKFEEARMAhfARRQAAIKAEEAR--KADELKKAEEKKKADEAKKAEEKKKADEAKkkaeeakkadEAKKKAEEA 1327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1653 SFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMS---KHKTELKNILDMLQLENHE------LQGLKLQHDQRV 1723
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaeKKKEEAKKKADAAKKKAEEkkkadeAKKKAEEDKKKA 1407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1724 SELEKTQVAVLEEKLELENLQQI--SQQQKGEIEWQKQLLERDKREIERMTAES---RALQSCVECLSKEKEDLQEKCDI 1798
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEakkKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1799 WEKKLAQTKRvlaAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQ----EELA 1874
Cdd:PTZ00121 1488 AKKKAEEAKK---KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEElkkaEEKK 1564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1875 NVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDI----SEWANRFEDCQKEEETKQQQLQVLQneiEENKLKLVQQEMMF 1950
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMklyeEEKKMKAEEAKKAEEAKIKAEELKK---AEEEKKKVEQLKKK 1641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1951 QRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSER 2030
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2031 EQQLVEKSGELLALQKEADSmradfsllrnqfltERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSL---LSK 2107
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEE--------------DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIeeeLDE 1787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2108 EQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSL 2187
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE 1867
|
890 900
....*....|....*....|...
gi 767956127 2188 KNLNQFLPELPADLEAILERNEN 2210
Cdd:PTZ00121 1868 ADFNKEKDLKEDDEEEIEEADEI 1890
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
561-769 |
1.36e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.95 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 561 EQQLDIMNKQYQQLESRLDEILSR--IAKETEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 636
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSEleSQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 637 NEcrklrDEKETLLQRLTEVEQERDQLEIVAMDA----ENMRKELAELESALQEQhevnasLQQTQGDLSAYEAELEARL 712
Cdd:COG3206 261 QS-----PVIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLQQE------AQRILASLEAELEALQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 767956127 713 NLRDAEANQLKEELEKVTRLtQLEQSALQAELEKERQALKNALGKAQFSEEKEQENS 769
Cdd:COG3206 330 ASLQAQLAQLEARLAELPEL-EAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
423-1122 |
1.40e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 423 RNDHMN-LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ----LKKISEAGK-DLLYK 496
Cdd:PTZ00121 1062 AKAHVGqDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaedARKAEEARKaEDARK 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 497 QLSGRLQLVNKLRQEALDLElqmEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHmKAQKSGKEQQLDIMNKQYQQLES 576
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAE---DARKAEEARKAEDAKKAEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEA 1217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 577 RLDEILSRI--AKETEEI-KDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:PTZ00121 1218 RKAEDAKKAeaVKKAEEAkKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 654 TEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARlnlrdAEANQLKEELEKVTRLT 733
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA-----ADEAEAAEEKAEAAEKK 1372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 734 QLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQnhlnhvVDGLVRPEEVAARV 813
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK------ADEAKKKAEEAKKA 1446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 814 DELRRKLKLGTGEMNIHSPSDVLGKSlADLQKQFSEilaRSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACE-- 891
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKA-DEAKKKAEE---AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEak 1522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 892 RALEARMNFDKRQHEARIQQMENEihyLQENLKSMEEIQGLTDL-QLQEADEEKERILAQLRELEKKKKLEDAKSQE--Q 968
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKK---KADELKKAEELKKAEEKkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvmK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 969 VFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQE--RAEELQEAERFSR-KAAQAAR----DLTRAEa 1041
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEkkKAEELKKAEEENKiKAAEEAKkaeeDKKKAE- 1678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1042 EIELLQNLLRQKGEQFRLEMEKTgvgtganSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRR 1121
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEA-------KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
|
.
gi 767956127 1122 E 1122
Cdd:PTZ00121 1752 D 1752
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-1093 |
1.49e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.29 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 350 YELEQElafyKIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQIKKMEPDEQLRNDHMNL 429
Cdd:pfam02463 246 LRDEQE----EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 430 RGHTP-------------LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYK 496
Cdd:pfam02463 322 EKKKAekelkkekeeieeLEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 497 QLSGRLQLVNKLRQEALDL---ELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQ 573
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLlkeEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 574 LESRLDEILSRIAKETEEIKDLEEQ-LTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQR 652
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARsGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 653 LTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL 732
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 733 TQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAAR 812
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 813 VDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACER 892
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 893 ALEARMNFDKRQ--HEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVF 970
Cdd:pfam02463 802 ELRALEEELKEEaeLLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 971 GLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLL 1050
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 767956127 1051 RQKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIAR 1093
Cdd:pfam02463 962 NKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1321-1975 |
1.62e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.05 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1321 LENEVSRLEDIMQHLKSKKRE--ERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV-----QKRQQQKDF 1393
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNkiELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqeQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1394 ID--GNVESLMTEL--EIEKSLKHHEDivdEIECIEKTLLKRRSELREA------------------DRLLAE---AESE 1448
Cdd:pfam15921 316 MRqlSDLESTVSQLrsELREAKRMYED---KIEELEKQLVLANSELTEArterdqfsqesgnlddqlQKLLADlhkREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1449 LSCTKEKTKNAVEKFTDAKRSL--LQTESDAEELERRAQETAVNLVKAD------QQLRSLQAdakdleqhkikQEEILK 1520
Cdd:pfam15921 393 LSLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSEcqgqmeRQMAAIQG-----------KNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1521 EINKIVAAKDSDFQCLskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLd 1600
Cdd:pfam15921 462 KVSSLTAQLESTKEML----RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL- 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1601 rqlghKKEELHLLQgsmVQAKAdlqEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTlikqeieke 1680
Cdd:pfam15921 537 -----KNEGDHLRN---VQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE--------- 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1681 eenlqvvlRQMSKHKTELKnildmlqlenhELQGLKLQHDQRVSELEKtqvavleeklelenlqQISQQQKGEIEWQKQL 1760
Cdd:pfam15921 597 --------KEINDRRLELQ-----------EFKILKDKKDAKIRELEA----------------RVSDLELEKVKLVNAG 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1761 LERdKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLaqtkrvlaaaEENSKMEQSNLEKLELNVRKLQQELDQ 1840
Cdd:pfam15921 642 SER-LRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF----------RNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1841 LNRDKLSLHND-------ISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWAN 1913
Cdd:pfam15921 711 TRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG 790
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 1914 RFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRlqKERESEESKLETSkVTLKEQQ 1975
Cdd:pfam15921 791 ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR--QEQESVRLKLQHT-LDVKELQ 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1461-2267 |
1.69e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1461 EKFTDAKRSLLQTESDAEELERRAQETAVNLVK-ADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAK---DSDFQCL 1536
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERlRREREKAERYQALLKEKREYEGYELLKEKEALERQKeaiERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1537 SKKKEKLTEELQKLQKDIEMAERN-EDHHLQVLKESEVLLQAKRAELEKLKSQVTSqqqemavLDRQLGHKKEELHllqg 1615
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIAS-------LERSIAEKERELE---- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1616 smvqakaDLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHK 1695
Cdd:TIGR02169 319 -------DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1696 TEL---KNILDMLQLENHELQGLKLQHDQRVSELEktqvavleeklelenlqqisQQQKGEIEWQKQLLERDKREIERMT 1772
Cdd:TIGR02169 392 EKLeklKREINELKRELDRLQEELQRLSEELADLN--------------------AAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1773 AESRALQSCVECLSKEKE---DLQEKCDIWEKKLAQTKRVLAAAEEnskmEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1849
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQelyDLKEEYDRVEKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKASIQGVHGTV 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1850 NDISAMQQQLQEKRE--AVNSLQ----EELANVQDHLNLAKQ------DLLHTTKHQDVLLSEQTRLQKDISEWANRFED 1917
Cdd:TIGR02169 528 AQLGSVGERYATAIEvaAGNRLNnvvvEDDAVAKEAIELLKRrkagraTFLPLNKMRDERRDLSILSEDGVIGFAVDLVE 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1918 CQKEEETKQQQL---QVLQNEIEENKLKLVQQEMM----------------------FQRLQKERESEESKLETSKVTLK 1972
Cdd:TIGR02169 608 FDPKYEPAFKYVfgdTLVVEDIEAARRLMGKYRMVtlegelfeksgamtggsraprgGILFSRSEPAELQRLRERLEGLK 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1973 EQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMR 2052
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI---EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2053 ADFSLLrnqflterkkaEKQVASLKEALkiqrsqleknlltinEDSERDsslLSKEQKQEnscIQKEMATIELVAQDNHE 2132
Cdd:TIGR02169 765 ARIEEL-----------EEDLHKLEEAL---------------NDLEAR---LSHSRIPE---IQAELSKLEEEVSRIEA 812
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2133 RARRLMKELNQMQYEYTELKKQMANqkdLERRQMEISDAMRTLKSEVkDEIRTSLKNLNQFLPELPADLEAILERNENLE 2212
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQE---LQEQRIDLKEQIKSIEKEI-ENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 2213 GELESLKENLpftmneGPFEEKLNfsqvhimdehwRGEALREKLRHREDRLKAQL 2267
Cdd:TIGR02169 889 KERDELEAQL------RELERKIE-----------ELEAQIEKKRKRLSELKAKL 926
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1320-1874 |
1.75e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1320 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnve 1399
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1400 slmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESElsctKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1480 LER-RAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKdSDFQCLSKKKEKLTEELQKLQKDIEMAE 1558
Cdd:PRK03918 364 YEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI-GELKKEIKELKKAIEELKKAKGKCPVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1559 R--NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsMVQAKADLQEALRLGETEVT 1636
Cdd:PRK03918 443 RelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKYNLEEL 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1637 EKCNhiREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEkeeenLQVVLRQMSKHKTELKNILDMLQLENHElqglk 1716
Cdd:PRK03918 521 EKKA--EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE-----LEKKLDELEEELAELLKELEELGFESVE----- 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1717 lQHDQRVSELEKTQVAVLEEKLElenlqqisqqqKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKC 1796
Cdd:PRK03918 589 -ELEERLKELEPFYNEYLELKDA-----------EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1797 DIWE-----KKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdISAMQQQLQEKREAVNSLQE 1871
Cdd:PRK03918 657 SEEEyeelrEEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKA 735
|
...
gi 767956127 1872 ELA 1874
Cdd:PRK03918 736 LLK 738
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
631-1060 |
1.80e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 631 QATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESA---LQEQHEVNASLQQTQGDLSAYEAE 707
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 708 LEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNAlgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQ 787
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL-------EELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 788 QLKDFQNHLnhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQK----------QFSEILARSKWE 857
Cdd:COG4717 228 ELEQLENEL--------EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 858 RDEAQVRERKLQEEMALQQEKLATGQEEFRqaCERALEARMNFDKRQHEARIQQMENEIHYLQENLK---SMEEIQGLTD 934
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 935 LQLQEADEEKERILAQLREL-EKKKKLEDAKSQ-EQVFGLDKELKKLKKAVATSDKLATAELTIA--KDQLKSLHGTVMK 1010
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYqELKEELEELEEQlEELLGELEELLEALDEEELEEELEELEEELEelEEELEELREELAE 457
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 1011 INQ-----ERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLE 1060
Cdd:COG4717 458 LEAeleqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
530-1122 |
2.02e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 530 QKEIKDLQIAIDSLDSK----DPKHSHMKAQKSGKEQQLDimnkqyqqlesRLDEILSRIAKETEEIKDLEEQLTEGQ-- 603
Cdd:PRK02224 198 EKEEKDLHERLNGLESElaelDEEIERYEEQREQARETRD-----------EADEVLEEHEERREELETLEAEIEDLRet 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 604 IAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaenmRKELAELESA 683
Cdd:PRK02224 267 IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL----------RDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 684 LQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrlTQLEQSALQAELEKERQALKNA---LGKAQ- 759
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED----RREEIEELEEEIEELRERFGDApvdLGNAEd 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 760 FSEEKEQENSELHAKLKHLQDDnnllkqqlkdfqnhlnhvvdgLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVlgKS 839
Cdd:PRK02224 413 FLEELREERDELREREAELEAT---------------------LRTARERVEEAEALLEAGKCPECGQPVEGSPHV--ET 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 840 LADLQKQFSEILA-RSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEarmnfdkrQHEARIQQMENEIHY 918
Cdd:PRK02224 470 IEEDRERVEELEAeLEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIA--------ERRETIEEKRERAEE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 919 LQENLKSMEEiqgltdlqlqEADEEKERilAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDklatAELTIAK 998
Cdd:PRK02224 542 LRERAAELEA----------EAEEKREA--AAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL----AAIADAE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 999 DQLKSLhgtvmkinQERAEELQEAERFSRKAAQAARDLTRA------EAEIELLQNLlRQKGEQFrlemektgvgtgans 1072
Cdd:PRK02224 606 DEIERL--------REKREALAELNDERRERLAEKRERKREleaefdEARIEEARED-KERAEEY--------------- 661
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 767956127 1073 qvleIEKLNETMERQRTEIARLQNVLdltgsdnkGGFENVLEEIAELRRE 1122
Cdd:PRK02224 662 ----LEQVEEKLDELREERDDLQAEI--------GAVENELEELEELRER 699
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1757-1999 |
2.25e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 2.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1757 QKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQ 1836
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1837 ELDQLnRDKLSlhNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQdllhttkhqdvLLSEQTRLQKDISEWANRFE 1916
Cdd:COG4942 98 ELEAQ-KEELA--ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----------LAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1917 DCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKV 1996
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
...
gi 767956127 1997 LAA 1999
Cdd:COG4942 244 PAA 246
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
148-205 |
2.43e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 49.45 E-value: 2.43e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 148 KLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEIEHI-PVWLGKkLKSLRVLNLKGNKI 205
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-732 |
2.71e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLlyKQLSGRLQLVNKLRQE----AL 513
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRiearLR 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 514 DLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIK 593
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDL----------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 594 DLEEQltegqiaanealKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVA---MDA 670
Cdd:TIGR02169 886 DLKKE------------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPeeeLSL 953
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 671 ENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL 732
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
516-761 |
3.36e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.22 E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 516 ELQMEKQKQEIAGKQKEIKDLQIAIDSLDskdpkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 595
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQ-----------------AELEELNEEYNELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 596 EEQLTEGQIAANEALK------------------KDLEGVISGLQeYLGTIkgqATQAQNECRKLRDEKETLLQRLTEVE 657
Cdd:COG3883 78 EAEIEERREELGERARalyrsggsvsyldvllgsESFSDFLDRLS-ALSKI---ADADADLLEELKADKAELEAKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 658 QERDQLEIVAMDAENMRKelaELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQ 737
Cdd:COG3883 154 AKLAELEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
250 260
....*....|....*....|....
gi 767956127 738 SALQAELEKERQALKNALGKAQFS 761
Cdd:COG3883 231 AAAAAAAAAAAAAASAAGAGAAGA 254
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1318-2222 |
4.09e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 4.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1318 HHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKK----SLECEVEELHRTVQKRQQQKDF 1393
Cdd:pfam01576 35 HQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEersqQLQNEKKKMQQHIQDLEEQLDE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1394 IDGNVESLMTE-LEIEKSLKHHEDIVDEIECIEKTLLKRRSELRE-----ADRLLAEAESELSCTKEKTKNAVeKFTDAK 1467
Cdd:pfam01576 115 EEAARQKLQLEkVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEErisefTSNLAEEEEKAKSLSKLKNKHEA-MISDLE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1468 RSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1547
Cdd:pfam01576 194 ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQI 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1548 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA 1627
Cdd:pfam01576 274 SELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQK 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1628 LRLGETEVTEKCNHIREVKSLLEE----LSFQKGELNVQI---SERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN 1700
Cdd:pfam01576 354 HTQALEELTEQLEQAKRNKANLEKakqaLESENAELQAELrtlQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1701 ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQS 1780
Cdd:pfam01576 434 KLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1781 CVEclsKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQ 1860
Cdd:pfam01576 514 NVE---RQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLD 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1861 EKREAVNSLQEelanvqdhlnlaKQdllhttKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK 1940
Cdd:pfam01576 591 HQRQLVSNLEK------------KQ------KKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAK 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1941 LKLvqqemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaEERVRTLQEEERWCESLEKTL 2020
Cdd:pfam01576 653 EEL-------ERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQL---EELEDELQATEDAKLRLEVNM 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2021 ----SQTKRQLSEREQQLVEKSGELLALQKEADSMradfsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKNLLTINE 2096
Cdd:pfam01576 723 qalkAQFERDLQARDEQGEEKRRQLVKQVRELEAE-----------LEDERKQRAQAVAAKKKLELDLKELEAQIDAANK 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2097 DSERDSSLLSKEQKQ----ENSCIQKEMATIELVAQ--DNHERARRLMKELNQMQYEYT---ELKKQMANQKDLERRQME 2167
Cdd:pfam01576 792 GREEAVKQLKKLQAQmkdlQRELEEARASRDEILAQskESEKKLKNLEAELLQLQEDLAaseRARRQAQQERDELADEIA 871
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 2168 ISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2222
Cdd:pfam01576 872 SGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTEL 926
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
126-181 |
4.97e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 48.67 E-value: 4.97e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 126 KLEVLNLSYNLIGKIEK--LDKLLKLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEI 181
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
435-602 |
5.43e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.00 E-value: 5.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRqEALD 514
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEEL----------EEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*...
gi 767956127 595 LEEQLTEG 602
Cdd:COG1579 164 EREELAAK 171
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
561-934 |
5.53e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 5.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 561 EQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTE-GQIAANEALKKDLEGVISGLQEyLGTIKGQATQAQNEC 639
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlQRLAEYSWDEIDVASAEREIAE-LEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 640 RKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTqgdlsAYEAELEARL--NLRDA 717
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL-----ELRALLEERFaaALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 718 EANQLKEELEKvtrltqlEQSALQAELEKERQALKNALgkAQFSEEKEQENSELHAKLkhlqDDNNllkqqlkDFQNHLN 797
Cdd:COG4913 763 VERELRENLEE-------RIDALRARLNRAEEELERAM--RAFNREWPAETADLDADL----ESLP-------EYLALLD 822
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 798 HVV-DGLVRPEEvaarvdELRRKLKlgtgEMNIHSPSDVLGK---SLADLQKQFSEI---LARSKWERDEA---QVRERK 867
Cdd:COG4913 823 RLEeDGLPEYEE------RFKELLN----ENSIEFVADLLSKlrrAIREIKERIDPLndsLKRIPFGPGRYlrlEARPRP 892
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956127 868 LQEEmalqqeklatgqEEFRQACERALEARMNFDKRQHEARIQQMENEIHYL--QENLKSMEEIQGLTD 934
Cdd:COG4913 893 DPEV------------REFRQELRAVTSGASLFDEELSEARFAALKRLIERLrsEEEESDRRWRARVLD 949
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
427-818 |
5.65e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 55.35 E-value: 5.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 427 MNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEqqilratEEFKQLEEAIQlkkiseagkdllykQLSGRLQLV- 505
Cdd:PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELN-------EAESDLEQDYQ--------------AASDHLNLVq 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 506 NKLRQ---------EALDLELQMEKQKQEIAGKQKEIKDLQI----AIDSLDSkdpkhshMKAQKSGKEQQLDIMNK--- 569
Cdd:PRK04863 342 TALRQqekieryqaDLEELEERLEEQNEVVEEADEQQEENEAraeaAEEEVDE-------LKSQLADYQQALDVQQTrai 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 570 QYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEylgtIKGQATQAQNECRKLRDE-- 645
Cdd:PRK04863 415 QYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEllSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEvs 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 646 KETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSA---YEAELEARLNLRDAEANQL 722
Cdd:PRK04863 491 RSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKnldDEDELEQLQEELEARLESL 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 723 KEELEKVtRLTQLEQSALQAELEKERQALknalgkaqfsEEKEQENSELHAKLKHLQD---DNNLLKQQLKDF-QNHLNH 798
Cdd:PRK04863 571 SESVSEA-RERRMALRQQLEQLQARIQRL----------AARAPAWLAAQDALARLREqsgEEFEDSQDVTEYmQQLLER 639
|
410 420
....*....|....*....|
gi 767956127 799 VVDGLVRPEEVAARVDELRR 818
Cdd:PRK04863 640 ERELTVERDELAARKQALDE 659
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
440-742 |
6.86e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.96 E-value: 6.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 440 EDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkiseagkdllykqlsgRLQLVNKL----------- 508
Cdd:COG3096 832 PDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKE---------------------QLQLLNKLlpqanlladet 890
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 509 ---RQEALDLEL-QMEKQKQEIAGKQKEIKDLQIAIDSLDSkDPkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSR 584
Cdd:COG3096 891 ladRLEELREELdAAQEAQAFIQQHGKALAQLEPLVAVLQS-DP-------------EQFEQLQADYLQAKEQQRRLKQQ 956
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 585 IAKETEEIK--------DLEEQLTEGQiAANEALKKDLEGV---ISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:COG3096 957 IFALSEVVQrrphfsyeDAVGLLGENS-DLNEKLRARLEQAeeaRREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTL 1035
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 654 TEVEQERDQLEIVAmDAEnmrkelAElESALQEQHEVNASLQQTQGDLSayeaELEARLNLRDAEANQLKEELEKVTR-L 732
Cdd:COG3096 1036 QELEQELEELGVQA-DAE------AE-ERARIRRDELHEELSQNRSRRS----QLEKQLTRCEAEMDSLQKRLRKAERdY 1103
|
330
....*....|
gi 767956127 733 TQLEQSALQA 742
Cdd:COG3096 1104 KQEREQVVQA 1113
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
653-966 |
7.45e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 7.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 653 LTEVEQERDQLEIVAMDAENMRKELAELESA-----LQEQHEVNASLQQTQGDLSAYEAELEAR------LNLRDAEANQ 721
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKREYegyelLKEKEALERQKEAIERQLASLEEELEKLteeiseLEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 722 LKEEL-EKVTRLTQLEQSALQAELEKERQALKNALGKAqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvv 800
Cdd:TIGR02169 273 LLEELnKKIKDLGEEEQLRVKEKIGELEAEIASLERSI---AEKERELEDAEERLAKLEAEIDKLLAEIEELEREI---- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 801 dglvrpEEVAARVDELRRKLKlgtgemnihSPSDVLGKSLADLQkQFSEILARSKWERDEAQVRERKLQEEMALQQEKLA 880
Cdd:TIGR02169 346 ------EEERKRRDKLTEEYA---------ELKEELEDLRAELE-EVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 881 TGQEEFRQACERALEARMnfDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEkkKKL 960
Cdd:TIGR02169 410 RLQEELQRLSEELADLNA--AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE--KEL 485
|
....*.
gi 767956127 961 EDAKSQ 966
Cdd:TIGR02169 486 SKLQRE 491
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1317-1730 |
8.84e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.34 E-value: 8.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1317 EHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDD---LLQEKKSLECEVEELHRTVQK-----RQ 1388
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEdekLLDEKKQFEKIAEELKGKEQElifllQA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1389 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEiecIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1468
Cdd:pfam05483 448 REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE---LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIN 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1469 SLLQTESDAEELErRAQETAVNLVKADQQLRSLQADAKDLEQHKI-KQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1547
Cdd:pfam05483 525 CKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1548 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVL----DRQLGHKKEELHLLQGSMVQAKAD 1623
Cdd:pfam05483 604 ENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1624 LQEALRLgETEVTEKCNH-IREVKSLLEELSFQKGELnvqISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNIL 1702
Cdd:pfam05483 684 ADEAVKL-QKEIDKRCQHkIAEMVALMEKHKHQYDKI---IEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLK 759
|
410 420
....*....|....*....|....*...
gi 767956127 1703 DMLQLENHELQGLKLQHDQRVSELEKTQ 1730
Cdd:pfam05483 760 KQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1321-2018 |
9.20e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 9.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnves 1400
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK-------------- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1401 lmteleIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:PRK03918 226 ------LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI----EELKKEIEELEEKVKELKELKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1481 ERRAQEtavnLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERn 1560
Cdd:PRK03918 296 IKLSEF----YEEYLDELREIEKRLSRLEEEINGIEERIKELEE----KEERLEELKKKLKELEKRLEELEERHELYEE- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1561 edhhlqvlkesevlLQAKRAELEKLKSQVTsqqqemavldrqlGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCN 1640
Cdd:PRK03918 367 --------------AKAKKEELERLKKRLT-------------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1641 HIREVKSLLEELSFQKGELNVQISErktqltlikqEIEKEEENLqvvlrqMSKHKTELKNILDMLQLENHELQGLKlqhd 1720
Cdd:PRK03918 420 EIKELKKAIEELKKAKGKCPVCGRE----------LTEEHRKEL------LEEYTAELKRIEKELKEIEEKERKLR---- 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1721 QRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKcdiwe 1800
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL----- 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1801 kklaqtkrvlaaaeenskmeQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAMQQQLQEKREAVNSLQEelanvqdh 1879
Cdd:PRK03918 555 --------------------KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELEPFYNEYLE-------- 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1880 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQvlQNEIEENKLKLVQQEMMFQRLQKERES 1959
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE 684
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 1960 EESKLETSKVTLKEQQHQLE--KELTDQKSKLDQVLSKVLAAEERVRTLQEEERwCESLEK 2018
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEerEKAKKELEKLEKALERVEELREKVKKYKALLK-ERALSK 744
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
243-784 |
1.15e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 243 HLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDK--------LNKSLKEEA 314
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDqlqklladLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 315 MLQKQ-------------SCEELKSDLNTKN-ELLKQKTIELTRACQKQYELEQELAfyKIDAKFEPLNYYPSEYAEIDk 380
Cdd:pfam15921 395 LEKEQnkrlwdrdtgnsiTIDHLRRELDDRNmEVQRLEALLKAMKSECQGQMERQMA--AIQGKNESLEKVSSLTAQLE- 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 381 apdespyigksrykrnmfATESYIIDSAQAVQIKKM--EPDEQLRNDhmnlrghtpLDTQLEDKEKKISAAQTRLSELHD 458
Cdd:pfam15921 472 ------------------STKEMLRKVVEELTAKKMtlESSERTVSD---------LTASLQEKERAIEATNAEITKLRS 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 459 EIEKAEQQILRATEEFKQLEEA---IQLKKISEAGKD----LLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQK 531
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRNVqteCEALKLQMAEKDkvieILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRL 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 532 EIKDLQIAidsLDSKDPKHSHMKAQKSGKE-QQLDIMNKQYQQLES------RLDEILSRIAKETEEIKDLEEQLtegqi 604
Cdd:pfam15921 605 ELQEFKIL---KDKKDAKIRELEARVSDLElEKVKLVNAGSERLRAvkdikqERDQLLNEVKTSRNELNSLSEDY----- 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 605 aanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEketllqrLTEVEQERDQLEIVAMDAENM----RKELAEL 680
Cdd:pfam15921 677 ---EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNT-------LKSMEGSDGHAMKVAMGMQKQitakRGQIDAL 746
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 681 ESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVtrltqleqSALQAELEKERQALKNALGKA-- 758
Cdd:pfam15921 747 QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVL--------RSQERRLKEKVANMEVALDKAsl 818
|
570 580 590
....*....|....*....|....*....|
gi 767956127 759 QFSEEKE----QENSELHAKLKHLQDDNNL 784
Cdd:pfam15921 819 QFAECQDiiqrQEQESVRLKLQHTLDVKEL 848
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1424-1635 |
1.43e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1424 IEKTLLKRRSELREADRLLAE--AESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSL 1501
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1502 QADA--KDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEdhhLQVLKESEVLLQAKR 1579
Cdd:COG3206 260 LQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE---LEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 1580 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKadLQEALRLGETEV 1635
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR--LAEALTVGNVRV 390
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1630-2299 |
1.58e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1630 LGETEVTEKcnHIREVKSLLEELSFQKGELNvqiSERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLEN 1709
Cdd:TIGR02169 176 LEELEEVEE--NIERLDLIIDEKRQQLERLR---REREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1710 HELQGLKLQHDQRVSELEktqvavleeklelenlqqisqqqkgEIEwqkQLLERDKREIERMTA-ESRALQSCVECLSKE 1788
Cdd:TIGR02169 251 EELEKLTEEISELEKRLE-------------------------EIE---QLLEELNKKIKDLGEeEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1789 KEDLqekcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1868
Cdd:TIGR02169 303 IASL-------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1869 LQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEM 1948
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1949 MFQRLQKERESEESKLETskvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQL- 2027
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYD----LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLg 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2028 --SEREQQLVEKSG----------------ELLALQKEADSMRADFSLLRN----------------------------- 2060
Cdd:TIGR02169 532 svGERYATAIEVAAgnrlnnvvveddavakEAIELLKRRKAGRATFLPLNKmrderrdlsilsedgvigfavdlvefdpk 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2061 -------------------------------------------------------QFLTERKKAEKQVASLKEALKIQRS 2085
Cdd:TIGR02169 612 yepafkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprggiLFSRSEPAELQRLRERLEGLKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2086 QLEKNLLTINEDSERDSSLLSKEQKqENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMAN-------- 2157
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASR-KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKElearieel 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2158 QKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPA---DLEAILERNENLEGELESLKENLpftmnegpfEEK 2234
Cdd:TIGR02169 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEArlrEIEQKLNRLTLEKEYLEKEIQEL---------QEQ 841
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 2235 LNFSQVHIMDEHWRGEALREKLRHREDRLKaqlrhcmSKQAEVlikgkRQTEGTLHSLRRQVDAL 2299
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELE-------ELEAAL-----RDLESRLGDLKKERDEL 894
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
288-1005 |
1.80e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.69 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 288 ELKSKQTRFLEEIKNQDKLNKSLKEE-AMLQKQ---SCEELKSDLNTKNELLKQKTIELTRAcqkqyeLEQELAFYKIDA 363
Cdd:pfam12128 266 GYKSDETLIASRQEERQETSAELNQLlRTLDDQwkeKRDELNGELSAADAAVAKDRSELEAL------EDQHGAFLDADI 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 364 kfeplnyyPSEYAEIDKAPDESPYIgkSRYKRNMFATESYIIDSAQAVQIKKMEPDEQLRNDHMNLrgHTPLDTQLEDKE 443
Cdd:pfam12128 340 --------ETAAADQEQLPSWQSEL--ENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGI--KDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 444 KKISAAQTRLSELHDEI-EKAEQQILRATEEFKQLEEAIQLKKISEAGKdllykQLSGRLqlvnKLRQEALDLELQMEKQ 522
Cdd:pfam12128 408 RQLAVAEDDLQALESELrEQLEAGKLEFNEEEYRLKSRLGELKLRLNQA-----TATPEL----LLQLENFDERIERARE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 523 KQEIAGKQKEikDLQIAIDSLDSKDPKHShmkaqksgkeQQLDIMNKQYQQLESRLDEilsriaketeeikdLEEQLTEG 602
Cdd:pfam12128 479 EQEAANAEVE--RLQSELRQARKRRDQAS----------EALRQASRRLEERQSALDE--------------LELQLFPQ 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 603 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDaENMRKELAELES 682
Cdd:pfam12128 533 AGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASE-EELRERLDKAEE 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 683 ALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALgkAQFSE 762
Cdd:pfam12128 612 ALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERL--NSLEA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 763 EKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVD---GLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKS 839
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDaqlALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDV 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 840 LADLQKQFSEILAR-SKWERDEAQVRE--RKLQEEMALQQEKLATGQEEFRQACER------ALEARMNFDKRQHEARIQ 910
Cdd:pfam12128 770 IAKLKREIRTLERKiERIAVRRQEVLRyfDWYQETWLQRRPRLATQLSNIERAISElqqqlaRLIADTKLRRAKLEMERK 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 911 QMENEIHYLQENLKSME-EIQGLTDLQL----QEADEEKERILAQLRELEKKKK--LEDAKSQEQVFGLDKELKKLKKAV 983
Cdd:pfam12128 850 ASEKQQVRLSENLRGLRcEMSKLATLKEdansEQAQGSIGERLAQLEDLKLKRDylSESVKKYVEHFKNVIADHSGSGLA 929
|
730 740
....*....|....*....|..
gi 767956127 984 ATSDKLATAELTIAKDQLKSLH 1005
Cdd:pfam12128 930 ETWESLREEDHYQNDKGIRLLD 951
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
643-966 |
2.15e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 643 RDEKETLLQRLTEVEQE----RDQLEIVAMDAENMRKELAEL---ESALQEQHE--------VNASLQQT------QGDL 701
Cdd:PRK04863 278 ANERRVHLEEALELRRElytsRRQLAAEQYRLVEMARELAELneaESDLEQDYQaasdhlnlVQTALRQQekieryQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 702 SAYEAELEARLNLRdAEANQLKEELEKVTRLTQLEQSALQAELEKERQAL-------------KNALGKAQ-------FS 761
Cdd:PRK04863 358 EELEERLEEQNEVV-EEADEQQEENEARAEAAEEEVDELKSQLADYQQALdvqqtraiqyqqaVQALERAKqlcglpdLT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 762 EEKEQE-NSELHAKLKHLQDDNNLLKQQLKDFQNHLNH----------VVDGLVRPEE----------------VAARVD 814
Cdd:PRK04863 437 ADNAEDwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQfeqayqlvrkIAGEVSRSEAwdvarellrrlreqrhLAEQLQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 815 ELRRKLKLGTGEMNIHspsdvlgkslADLQKQFSEILARSKWERDEAQVRERkLQEEmalQQEKLATGQEEFRQACERAL 894
Cdd:PRK04863 517 QLRMRLSELEQRLRQQ----------QRAERLLAEFCKRLGKNLDDEDELEQ-LQEE---LEARLESLSESVSEARERRM 582
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 895 EARMNFDkrQHEARIQQMEN---EIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLREL-EKKKKLEDAKSQ 966
Cdd:PRK04863 583 ALRQQLE--QLQARIQRLAArapAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELtVERDELAARKQA 656
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1353-1878 |
2.60e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1353 EKEMEELHHNIDDLLQEKKSLECEVEELH----RTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTL 1428
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEeqreQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1429 LKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLlqtESDAEELERRAQETAVNLVKADQQLRSLQADAKDL 1508
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1509 EQHKIKQEEILKEInkivaakDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ 1588
Cdd:PRK02224 355 EERAEELREEAAEL-------ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1589 VTSQQQEMAVLDRQLgHKKEELhLLQGSMVQAKADLQEALRLGETEvtEKCNHIREVKSLLEELSFQKGELNVQIsERKT 1668
Cdd:PRK02224 428 EAELEATLRTARERV-EEAEAL-LEAGKCPECGQPVEGSPHVETIE--EDRERVEELEAELEDLEEEVEEVEERL-ERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1669 QLTLIKQEIEKEEENLQVVLRQMSKHKTELKNilDMLQLEnhELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQ 1748
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEE--KRERAE--ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1749 QQKGEIEWQKQLLERdkreIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLA---QTKRVLAAAEENSKME--QSN 1823
Cdd:PRK02224 579 SKLAELKERIESLER----IRTLLAAIADAEDEIERLREKREALAELNDERRERLAekrERKRELEAEFDEARIEeaRED 654
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 1824 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQ------QQLQEKREAVNSLQEELANVQD 1878
Cdd:PRK02224 655 KERAEEYLEQVEEKLDELREERDDLQAEIGAVEneleelEELRERREALENRVEALEALYD 715
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
440-702 |
2.77e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 440 EDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLykqlsgrlQLVNKLRQEALDLELQM 519
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLL--------QQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 520 EKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaQKSGKEQQLDimnKQYQQLESRLDEILSRIAKETEEIKDLEEQL 599
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPEL------------LQSPVIQQLR---AQLAELEAELAELSARYTPNHPDVIALRAQI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 600 tegqiaanEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAE 679
Cdd:COG3206 301 --------AALRAQLQ---QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
250 260
....*....|....*....|...
gi 767956127 680 LesaLQEQHEVNASLQQTQGDLS 702
Cdd:COG3206 370 L---LQRLEEARLAEALTVGNVR 389
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1719-2220 |
2.83e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1719 HDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLqekcdi 1798
Cdd:PRK02224 246 HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL------ 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1799 wEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQD 1878
Cdd:PRK02224 320 -EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1879 HLNLAKQDLLHTTKHQDVLLSEQTRLQKDIsewanrfedcqKEEETKqqqLQVLQNEIEENklklvqqemmfQRLQKE-- 1956
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELRERE-----------AELEAT---LRTARERVEEA-----------EALLEAgk 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1957 -----RESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaeERVRTLQEEERWCESLEKTLSQTKRQLSERE 2031
Cdd:PRK02224 454 cpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL----ERAEDLVEAEDRIERLEERREDLEELIAERR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2032 QQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEK---QVASL---KEALKIQRSQLEK--NLLTINEDSERDSS 2103
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEareEVAELnskLAELKERIESLERirTLLAAIADAEDEIE 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2104 LLS--KEQKQENSCIQKEMatielvAQDNHERARRLMKELNQMQYEYTELKKQMAnqkdlERRQMEISDAMRTLKSEvKD 2181
Cdd:PRK02224 610 RLRekREALAELNDERRER------LAEKRERKRELEAEFDEARIEEAREDKERA-----EEYLEQVEEKLDELREE-RD 677
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 767956127 2182 E-------IRTSLKNLNQFLPELPAdLEAILERNENLEGELESLKE 2220
Cdd:PRK02224 678 DlqaeigaVENELEELEELRERREA-LENRVEALEALYDEAEELES 722
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1321-1921 |
2.87e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1400
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1401 LmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELScTKEKTKNAVEK-----------FTDAKRS 1469
Cdd:TIGR02169 446 K--ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEErvrggraveevLKASIQG 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1470 LLQTESDAEELERRAQ----------------ETAVNLVKADQQLRSLQAD-AKDLEQHKIKQEEILKEINKIVAAKDS- 1531
Cdd:TIGR02169 523 VHGTVAQLGSVGERYAtaievaagnrlnnvvvEDDAVAKEAIELLKRRKAGrATFLPLNKMRDERRDLSILSEDGVIGFa 602
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1532 -DFQCLSKKKEKLTEELQK---LQKDIEMAERNEDHHLQVLKESEVL----------LQAKRAEL--EKLKSQVTSQQQE 1595
Cdd:TIGR02169 603 vDLVEFDPKYEPAFKYVFGdtlVVEDIEAARRLMGKYRMVTLEGELFeksgamtggsRAPRGGILfsRSEPAELQRLRER 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1596 MAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRlgetEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQ 1675
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASR----KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1676 EIEKEEENLQVVLRQMSKHKTELKNILDMLQLE-----NHELQGLKLQH---DQRVSELEKTQVAVLEEKLELENLQQIS 1747
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiQAELSKLEEEVsriEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1748 QQQKGEIEWQK----QLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSN 1823
Cdd:TIGR02169 839 QEQRIDLKEQIksieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1824 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQ--QQLQEKREAVnslQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQ 1901
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELslEDVQAELQRV---EEEIRALEPVNMLAIQEYEEVLKRLDELKEKR 995
|
650 660
....*....|....*....|
gi 767956127 1902 TRLQKDISEWANRFEDCQKE 1921
Cdd:TIGR02169 996 AKLEEERKAILERIEEYEKK 1015
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1443-1632 |
2.87e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1443 AEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKE- 1521
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1522 -------------INKIVAAKD-SDF-------QCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRA 1580
Cdd:COG3883 92 aralyrsggsvsyLDVLLGSESfSDFldrlsalSKIADADADLLEELKADKAELEAKKAE-------LEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 767956127 1581 ELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGE 1632
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1825-2184 |
3.51e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 52.65 E-value: 3.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1825 EKLELNVRKLQQELDQLN-RDKLSLHND-ISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTK---HQDVL-- 1897
Cdd:COG3096 279 ERRELSERALELRRELFGaRRQLAEEQYrLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKierYQEDLee 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1898 LSEQTRLQKDISEWAN--------RFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE-SEESKLETSK 1968
Cdd:COG3096 359 LTERLEEQEEVVEEAAeqlaeaeaRLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARAlCGLPDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1969 V-----TLKEQQHQLEKELTDQKSKLD-------------QVLSKVLAAEER------VRTLQEEERWCESLEKTLSQTK 2024
Cdd:COG3096 439 AedylaAFRAKEQQATEEVLELEQKLSvadaarrqfekayELVCKIAGEVERsqawqtARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2025 RQLSEREQqlveksgeLLALQKEADSMRADFSLLRNQFLTerkkAEKQVASLKEALKIQRSQLEKNLltiNEDSERDSSl 2104
Cdd:COG3096 519 AQLAELEQ--------RLRQQQNAERLLEEFCQRIGQQLD----AAEELEELLAELEAQLEELEEQA---AEAVEQRSE- 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2105 LSKEQKQENSCIqKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIR 2184
Cdd:COG3096 583 LRQQLEQLRARI-KELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIE 661
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
270-800 |
3.77e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNT--KNELLKQKTIELTracq 347
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLleKEKLNIQKNIDKI---- 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 348 KQYELEQELAFYKIDAKFEPLNYYPSEYAEIDKapdespyigksrykrnmfaTESYIIDSAQAVQIKKMEPDEQLRNDHM 427
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELKK-------------------QNNQLKDNIEKKQQEINEKTTEISNTQT 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 428 NLRG----HTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQIL-----RATEEFKQLEEAI--QLKKISEAGKDLLY- 495
Cdd:TIGR04523 254 QLNQlkdeQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqKEQDWNKELKSELknQEKKLEEIQNQISQn 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 496 -KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSL-----------DSKDPKHSHMKAQKSGKEQQ 563
Cdd:TIGR04523 334 nKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYkqeiknlesqiNDLESKIQNQEKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 564 LDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEqltegQIAANEALKKDLEGVISGLQEYLGTIKGqatqaqnECRKLR 643
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN-----QDSVKELIIKNLDNTRESLETQLKVLSR-------SINKIK 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 644 DEKETLLQRLTEVEQERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYEAE------------LEA 710
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLtKKISSLKEKIEKLESEKKEKESKISDLEDElnkddfelkkenLEK 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 711 RLNLRDAEANQLKEELEKVTRlTQLEQSALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLK 790
Cdd:TIGR04523 562 EIDEKNKEIEELKQTQKSLKK-KQEEKQELIDQKEKEKKDLIKEI------EEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
570
....*....|
gi 767956127 791 DFQNHLNHVV 800
Cdd:TIGR04523 635 NIKSKKNKLK 644
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1516-2025 |
4.15e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 4.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1516 EEILKEINKIvaakDSDFQCLSKKKEKLTEELQKLQK---DIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQ 1592
Cdd:PRK03918 203 EEVLREINEI----SSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1593 QQEMAVLdRQLGHKKEELHLLQGSMVQAKADLQEaLRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTl 1672
Cdd:PRK03918 279 EEKVKEL-KELKEKAEEYIKLSEFYEEYLDELRE-IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1673 IKQEIEKEEENLQVVLRQMSKHKTELKNI-LDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQK 1751
Cdd:PRK03918 356 ELEERHELYEEAKAKKEELERLKKRLTGLtPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1752 GEI---------EWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLqEKCDIWEKKLAQTKRVLAAAEE-NSKMEQ 1821
Cdd:PRK03918 436 GKCpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLKELAEQLKElEEKLKK 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1822 SNLEKLELN---VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREavnsLQEELANVQDHL-NLAKQDLLHTTKHQDVL 1897
Cdd:PRK03918 515 YNLEELEKKaeeYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE----LEKKLDELEEELaELLKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1898 LSEQTRLQKDISEWaNRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKE--------RESEESKLETSKV 1969
Cdd:PRK03918 591 EERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEleelekkySEEEYEELREEYL 669
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 1970 TLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKR 2025
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1336-2049 |
4.84e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 4.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1336 KSKKREERWMRasKRQSEKEMEELHHNIDDLLQE---KKSLECEVEELHRTVQKRQQQkdfidgnVESLMTELEIEKSLK 1412
Cdd:pfam12128 218 LNRQQVEHWIR--DIQAIAGIMKIRPEFTKLQQEfntLESAELRLSHLHFGYKSDETL-------IASRQEERQETSAEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1413 HHEDIVDEIECIEKTLlKRRSELREADRLLAEAESELSCTKEKT----KNAVEKFTDAKRSLLQTESDAEELERR--AQE 1486
Cdd:pfam12128 289 NQLLRTLDDQWKEKRD-ELNGELSAADAAVAKDRSELEALEDQHgaflDADIETAAADQEQLPSWQSELENLEERlkALT 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1487 TAVNLVKADQQLRSLQAD---AKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSkkkeklteelQKLQKDIEMAERNedh 1563
Cdd:pfam12128 368 GKHQDVTAKYNRRRSKIKeqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALE----------SELREQLEAGKLE--- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1564 hlqvLKESEVLLQAKRAELEKLKSQVTSQQQEMAvldrQLGHKKEELHLLQGSMVQAKA---DLQEALRLGETEVTEKCN 1640
Cdd:pfam12128 435 ----FNEEEYRLKSRLGELKLRLNQATATPELLL----QLENFDERIERAREEQEAANAeveRLQSELRQARKRRDQASE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1641 HIREVKSLLEELSFQKGELNVQISERK-TQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQL-ENHELQGLKLq 1718
Cdd:pfam12128 507 ALRQASRRLEERQSALDELELQLFPQAgTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVgGELNLYGVKL- 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1719 HDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQScvecLSKEKEDLQEKCDI 1798
Cdd:pfam12128 586 DLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTA----LKNARLDLRRLFDE 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1799 WEKKLAQTKRVLAAAEENSKMEQSNLEK-LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREA-VNSLQEELANV 1876
Cdd:pfam12128 662 KQSEKDKKNKALAERKDSANERLNSLEAqLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAqLALLKAAIAAR 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1877 QD----HLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEE-----------ETKQQQLQVLQNEIEENKL 1941
Cdd:pfam12128 742 RSgakaELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRqevlryfdwyqETWLQRRPRLATQLSNIER 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1942 KLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLdqvlskvlaaeERVRTLQEEERwCESLEKTLS 2021
Cdd:pfam12128 822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM-----------SKLATLKEDAN-SEQAQGSIG 889
|
730 740
....*....|....*....|....*...
gi 767956127 2022 QTKRQLserEQQLVEKSGELLALQKEAD 2049
Cdd:pfam12128 890 ERLAQL---EDLKLKRDYLSESVKKYVE 914
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1612-1989 |
5.73e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 51.43 E-value: 5.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1612 LLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLtlikqeiekeEENLQVVLRQM 1691
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEEL----------RQSREKHEELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1692 SKHKtELKNILDMLQLENHELQGLKLQHDQRVSELEktqvavleekleleNLQQISQQQKGEIEWQkqlLERDKREIERM 1771
Cdd:pfam07888 101 EKYK-ELSASSEELSEEKDALLAQRAAHEARIRELE--------------EDIKTLTQRVLERETE---LERMKERAKKA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1772 TAESRALQScveclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL---SL 1848
Cdd:pfam07888 163 GAQRKEEEA-------ERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAeneAL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1849 HNDISAMQQQLQEKREAVNSLQEELANVqdhlnLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ--KEEETKQ 1926
Cdd:pfam07888 236 LEELRSLQERLNASERKVEGLGEELSSM-----AAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARwaQERETLQ 310
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956127 1927 QQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKL 1989
Cdd:pfam07888 311 QSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASL 373
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
435-601 |
5.98e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 5.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiQLKKISEAGKDLLYK------------------ 496
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA--ELEAQKEELAELLRAlyrlgrqpplalllsped 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 497 --QLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSL-DSKDPKHSHMKAQKSGKEQQLDIMNKQYQQ 573
Cdd:COG4942 131 flDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALlAELEEERAALEALKAERQKLLARLEKELAE 210
|
170 180
....*....|....*....|....*...
gi 767956127 574 LESRLDEILSRIAKETEEIKDLEEQLTE 601
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
561-1096 |
7.07e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 561 EQQLDIMNKQYQQLEsRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECR 640
Cdd:COG4913 241 HEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 641 KLRDEKETL--------LQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNAS--------LQQTQGDLSAY 704
Cdd:COG4913 320 ALREELDELeaqirgngGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEefaalraeAAALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 705 EAELEARLNLRDAEANQLKEELEKVTR-LTQLEQ--SALQAELEKERQALKNALGKAQfseekeqenSELH--AKLKHLQ 779
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAeIASLERrkSNIPARLLALRDALAEALGLDE---------AELPfvGELIEVR 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 780 DDNnllkqqlKDFQNHLNHVVDG-----LVRPE---EVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADlqkqfsEIL 851
Cdd:COG4913 471 PEE-------ERWRGAIERVLGGfaltlLVPPEhyaAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD------SLA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 852 ARSKWERDEAQVR-ERKLQEEMALQQeklATGQEEFRQAcERAL--EARMNFDKRQHEARIQQMENEIHYL-QENLKSME 927
Cdd:COG4913 538 GKLDFKPHPFRAWlEAELGRRFDYVC---VDSPEELRRH-PRAItrAGQVKGNGTRHEKDDRRRIRSRYVLgFDNRAKLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 928 EIQGltdlQLQEADEEKERILAQLRELEKKKK-LEDAKSQEQVFGLDKELKKLKKAVATsdklATAELTIAKDQLKSLHG 1006
Cdd:COG4913 614 ALEA----ELAELEEELAEAEERLEALEAELDaLQERREALQRLAEYSWDEIDVASAER----EIAELEAELERLDASSD 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1007 TVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQK-------------------GEQFRLEMEKTGVG 1067
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELqdrleaaedlarlelrallEERFAAALGDAVER 765
|
570 580
....*....|....*....|....*....
gi 767956127 1068 TGANSQVLEIEKLNETMERQRTEIARLQN 1096
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMR 794
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
511-774 |
8.37e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 51.21 E-value: 8.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 511 EALDLELQMEKQKQEIAGKQKEIKD-LQIAIDSLDskDPKHSHMKAQksgkeqqldimnkQYQQ----LESRLDEILSRI 585
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQAEIVEaLQSALNWLE--ERKGSLERAK-------------QYQQvidnFPKLSAELRQQL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 586 AKETEEIKDLEEQLTegqiaaNEALKKDLEGVISGLQEylgtIKGQATQAQNECRKLRDEKETLLQRLTEVeqerdqlei 665
Cdd:PRK10929 89 NNERDEPRSVPPNMS------TDALEQEILQVSSQLLE----KSRQAQQEQDRAREISDSLSQLPQQQTEA--------- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 666 vamdaenmRKELAELESALQEQHEVNASLQQTQgdlsayEAELEARLNLRDAEANQLkeELEKVTRLTQLEQSALQAELE 745
Cdd:PRK10929 150 --------RRQLNEIERRLQTLGTPNTPLAQAQ------LTALQAESAALKALVDEL--ELAQLSANNRQELARLRSELA 213
|
250 260 270
....*....|....*....|....*....|....*....
gi 767956127 746 KER--------QALKNALgKAQFSEEKEQ--ENSELHAK 774
Cdd:PRK10929 214 KKRsqqldaylQALRNQL-NSQRQREAERalESTELLAE 251
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
435-711 |
9.64e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 9.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnKLRQEALD 514
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEID------------------------KLQAEIAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 LELQMEKQKQEIAgkqKEIKDLQIAIDS-------LDSKDPKhshmkaqksgkeqqlDIMNKQyqqleSRLDEILSRIAK 587
Cdd:COG3883 77 AEAEIEERREELG---ERARALYRSGGSvsyldvlLGSESFS---------------DFLDRL-----SALSKIADADAD 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 588 ETEEIKDLEEQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVA 667
Cdd:COG3883 134 LLEELKADKAELEA-KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 767956127 668 MDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR 711
Cdd:COG3883 213 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAG 256
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1525-2221 |
9.74e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 9.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1525 IVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLG 1604
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1605 HKKEELHLLQGSMVQAK---ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEE 1681
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1682 ENLQVVLRQMSKHKTELKNILDMLQLENH---ELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQK 1758
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1759 QLLERDKREIERMTAESRALQSCVECLSKEKEDL-QEKCDIWEKKLaqtKRVLAAAEENSKMEQSNLEKLELNVRKLQQE 1837
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnNQKEQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1838 LDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEElanvqdhlnlaKQDLLHTTKHqdvLLSEQTRLQKDISEWANRFED 1917
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE-----------NQSYKQEIKN---LESQINDLESKIQNQEKLNQQ 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1918 CQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEE---SKLETSKVTLKEQQHQLEKELTDQKSKLDQVLS 1994
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1995 KVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQL----VEKSGELLALQKEADSMraDFSLLRNQFLTERKKAE 2070
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLesekKEKESKISDLEDELNKD--DFELKKENLEKEIDEKN 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2071 KQVASLKEALK-IQRSQLEKNLLTINEDSERD---SSLLSKEQKQEN-----SCIQKEMATIELVAQDNHERARRLMKEL 2141
Cdd:TIGR04523 568 KEIEELKQTQKsLKKKQEEKQELIDQKEKEKKdliKEIEEKEKKISSlekelEKAKKENEKLSSIIKNIKSKKNKLKQEV 647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2142 NQMQYEYTELKKQMAN----QKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFlpelpADLEAILERNENLEGELES 2217
Cdd:TIGR04523 648 KQIKETIKEIRNKWPEiikkIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRI-----KDLPKLEEKYKEIEKELKK 722
|
....
gi 767956127 2218 LKEN 2221
Cdd:TIGR04523 723 LDEF 726
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
441-742 |
1.09e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.11 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdlLYKQLSGRLQL--VNKLRQEALDLELQ 518
Cdd:PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS-----------ALNRLLPRLNLlaDETLADRVEEIREQ 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 519 M---EKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKsgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEikDL 595
Cdd:PRK04863 903 LdeaEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDY----QQAQQTQRDAKQQAFALTEVVQRRAHFSYE--DA 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 596 EEQLTEGQiAANEALKKDLEgvisGLQEYLGTIKGQATQAQNECRK-------LRDEKETLLQRLTEVEQERDQLEIVAm 668
Cdd:PRK04863 977 AEMLAKNS-DLNEKLRQRLE----QAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQDLGVPA- 1050
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 669 dAENMRKELAELESALQEQhevnasLQQTQGDLSAyeaeLEARLNLRDAEANQLKEELEKVTR-LTQLEQSALQA 742
Cdd:PRK04863 1051 -DSGAEERARARRDELHAR------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERdYHEMREQVVNA 1114
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1855-2062 |
1.15e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1855 MQQQLQEKREAVNS----LQEELANVQDHLNLAKQDLLH-TTKHQDVLLSEQTR-LQKDISEWANRFEDCQKEEETKQQQ 1928
Cdd:COG3206 162 LEQNLELRREEARKalefLEEQLPELRKELEEAEAALEEfRQKNGLVDLSEEAKlLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1929 LQVLQNEIEENKLKL--VQQEMMFQRLQKERESEESKLETSKVTLKEQqH----QLEKELTDQKSKLDQVLSKVLA-AEE 2001
Cdd:COG3206 242 LAALRAQLGSGPDALpeLLQSPVIQQLRAQLAELEAELAELSARYTPN-HpdviALRAQIAALRAQLQQEAQRILAsLEA 320
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 2002 RVRTLQEEErwcESLEKTLSQTKRQLsereQQLVEKSGELLALQKEADSMRADFSLLRNQF 2062
Cdd:COG3206 321 ELEALQARE---ASLQAQLAQLEARL----AELPELEAELRRLEREVEVARELYESLLQRL 374
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1823-2026 |
1.18e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1823 NLEKLELNVRKLQQELDQLNRdklslhndISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLhtTKHQDVLLSEQT 1902
Cdd:COG4913 236 DLERAHEALEDAREQIELLEP--------IRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1903 RLQKDISEWANRFEDCQKEEETKQQQ--------LQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQ 1974
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 767956127 1975 QHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERwceSLEKTLSQTKRQ 2026
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELR---ELEAEIASLERR 434
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1745-2052 |
1.29e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.51 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1745 QISQQQKGEIEWQKQLlERDKREIERMTAESRALQSCVEclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNL 1824
Cdd:pfam17380 276 HIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVE----RRRKLEEAEKARQAEMDRQAAIYAEQERMAMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1825 EKLELNVRKlqQELDQLNRDKLSLH----NDISAMQQQLQEKREAVNSLQEELANV-------QDHLNLAKQDLLHTTKH 1893
Cdd:pfam17380 351 ERIRQEERK--RELERIRQEEIAMEisrmRELERLQMERQQKNERVRQELEAARKVkileeerQRKIQQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1894 QDVLLSEQTRLQKDisEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEmmfqrlQKERESEESKLETSKVTLKE 1973
Cdd:pfam17380 429 QEEARQREVRRLEE--ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELE------KEKRDRKRAEEQRRKILEKE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1974 QQHQLEKELTDQKSKldQVLSKVLaaEERVRTLQEEERWCESLEKTLSQT----KRQLSEREQQLVEKSGELLALQKEAD 2049
Cdd:pfam17380 501 LEERKQAMIEEERKR--KLLEKEM--EERQKAIYEEERRREAEEERRKQQemeeRRRIQEQMRKATEERSRLEAMERERE 576
|
...
gi 767956127 2050 SMR 2052
Cdd:pfam17380 577 MMR 579
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1320-2110 |
1.40e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1320 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVE 1399
Cdd:pfam02463 301 ELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1400 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1480 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1559
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1560 NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELhllqgsmvqakadlqeaLRLGETEVTEKC 1639
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL-----------------KSIAVLEIDPIL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1640 NHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeenlqVVLRQMSKHKTELKNILDMLQLENHELQGLKLQH 1719
Cdd:pfam02463 604 NLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA--------KAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1720 DQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIW 1799
Cdd:pfam02463 676 LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELdqlnrdklslhnDISAMQQQLQEKREAVNSLQEELANVQDH 1879
Cdd:pfam02463 756 RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE------------KLKAQEEELRALEEELKEEAELLEEEQLL 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1880 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANR-FEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE 1958
Cdd:pfam02463 824 IEQEEKIKEEELEELALELKEEQKLEKLAEEELERlEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELE 903
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1959 SEESKletskvtlKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKS 2038
Cdd:pfam02463 904 EESQK--------LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV 975
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 2039 GELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQK 2110
Cdd:pfam02463 976 NLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAE 1047
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
126-167 |
1.79e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.77 E-value: 1.79e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 767956127 126 KLEVLNLSYNLIGKIEKLDKLLKLRELNLSYN-KISKIEGIEN 167
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1346-1559 |
1.81e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1346 RASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL-EIEKSLKHHEDIVdeieci 1424
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaELRAELEAQKEEL------ 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1425 eKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT-ESDAEELERRAQETAVNLVKADQQLRSLQA 1503
Cdd:COG4942 107 -AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 1504 DAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1559
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
436-683 |
1.88e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.44 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 436 DTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnKLRQEALDL 515
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE------------------------ALQAEIDKL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 516 ELQMEKQKQEIAGKQKEIKD----LQIAIDS-------LDSKDPKH--SHMKAQKSGKEQQLDIMNkQYQQLESRLDEIL 582
Cdd:COG3883 71 QAEIAEAEAEIEERREELGEraraLYRSGGSvsyldvlLGSESFSDflDRLSALSKIADADADLLE-ELKADKAELEAKK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 583 SRIAKETEEIKDLEEQLtegqiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQ 662
Cdd:COG3883 150 AELEAKLAELEALKAEL--------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
250 260
....*....|....*....|.
gi 767956127 663 LEIVAMDAENMRKELAELESA 683
Cdd:COG3883 222 AAAAAAAAAAAAAAAAAAAAA 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1321-1591 |
1.88e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1321 LENEVSRLEDIMQHLKSKKREERWMR-------ASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDF 1393
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRdeadevlEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1394 IDGNVESLMTELEIEKSlkHHEDIVDEIEciekTLLKRRSELREAdrlLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT 1473
Cdd:PRK02224 291 LEEERDDLLAEAGLDDA--DAEAVEARRE----ELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1474 ESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKD 1553
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 767956127 1554 IEMAER--------------NEDHHLQVLKESEVLLQAKRAELEKLKSQVTS 1591
Cdd:PRK02224 442 VEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1472-1669 |
2.43e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1472 QTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQ 1551
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1552 KDIE-----MAERNEDHHLQVLKESEVLLQAKRAeLEKLKSQVTSQQQEMAVLDRQLghkkEELHLLQGSMVQAKADLQE 1626
Cdd:COG4942 104 EELAellraLYRLGRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADL----AELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767956127 1627 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1669
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-958 |
2.74e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE-----------EAIQLKKISEAGKDLLYKQLSGRLQ 503
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEkeleklnnkynDLKKQKEELENELNLLEKEKLNIQK 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 504 LVNKLRQEALDLELQM---EKQKQEIAGKQKEIKDLQ----IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLES 576
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKkqnnQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 577 RLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEV 656
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 657 EQERDQLEivaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrltqLE 736
Cdd:TIGR04523 348 KKELTNSE---SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK------LQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 737 QSALQAELEKERQALKNALGKAQFSEEKEQeNSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpeevaarvDEL 816
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL----------EQK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 817 RRKLKLGTGEMnihspsdvlgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFrqaceraLEA 896
Cdd:TIGR04523 488 QKELKSKEKEL----------KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL-------NKD 550
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 897 RMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKK 958
Cdd:TIGR04523 551 DFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
515-1115 |
3.14e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 LELQMEKQKQEIAGKQKEIKDLQIAiDSLDSKDPKHSHMKAQKSGKEQQLDimNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:PTZ00121 1029 IEELTEYGNNDDVLKEKDIIDEDID-GNHEGKAEAKAHVGQDEGLKPSYKD--FDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 595 LEEQLTEGQIAANEALKKDLEgvisgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEveqERDQLEIVAMDAENMR 674
Cdd:PTZ00121 1106 TETGKAEEARKAEEAKKKAED-----ARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE---DARKAEEARKAEDAKK 1177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 675 KELAELESALQEQHEVNASLQQTQGDlSAYEAELEARL-NLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKN 753
Cdd:PTZ00121 1178 AEAARKAEEVRKAEELRKAEDARKAE-AARKAEEERKAeEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 754 --ALGKAQFSEEKEQENSELHAKLKHLQDDNNLLK-QQLKDFQNhlNHVVDGLVRPEEVAARVDELRRKLKlgtgemNIH 830
Cdd:PTZ00121 1257 feEARMAHFARRQAAIKAEEARKADELKKAEEKKKaDEAKKAEE--KKKADEAKKKAEEAKKADEAKKKAE------EAK 1328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 831 SPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQ------EEMALQQEKLATGQEEFRQACE---RALEARMNFD 901
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaekkkEEAKKKADAAKKKAEEKKKADEakkKAEEDKKKAD 1408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 902 KRQHEARIQQMENEIHYLQENLKSMEEIQGLTDlQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKK 981
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE-EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 982 A--VATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERfSRKAAQAARDLTRAEAEiELlqnllrQKGEQFRL 1059
Cdd:PTZ00121 1488 AkkKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE-AKKADEAKKAEEKKKAD-EL------KKAEELKK 1559
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 1060 EMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEE 1115
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1785-2222 |
3.19e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 3.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1785 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1864
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1865 AVNSLQEELANVqdhlnlaKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIE--ENKLK 1942
Cdd:TIGR04523 118 QKNKLEVELNKL-------EKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLniQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1943 LVQQEMMFQRLQ----KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEE----RWCE 2014
Cdd:TIGR04523 191 KIKNKLLKLELLlsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQnkikKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2015 SLEKTLSQTKRQLSEREQQLVEKSGELLAL--QKEADSMRADFSLLRNQ------FLTERKKAEKQVASLKEA---LKIQ 2083
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQLKSEISDLnnQKEQDWNKELKSELKNQekkleeIQNQISQNNKIISQLNEQisqLKKE 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2084 RSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQK------EMATIELVAQDNHERARRLMKELNQMQYEYTELKKQman 2157
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE--- 427
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 2158 QKDLERRQMEISDAMRTLKSEvKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2222
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
148-179 |
3.23e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.00 E-value: 3.23e-05
10 20 30
....*....|....*....|....*....|..
gi 767956127 148 KLRELNLSYNKISKIEGIENMCNLQKLNLAGN 179
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
482-733 |
3.72e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 482 QLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaqksg 559
Cdd:COG4942 18 QADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL---------------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 560 kEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEalkkDLEGVISGLQeYLGTIkgqATQAQNEC 639
Cdd:COG4942 82 -EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE----DFLDAVRRLQ-YLKYL---APARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 640 RKLRDEKETLLQRLTEVEQERDQLEIVamdAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEA 719
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEAL---LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
250
....*....|....
gi 767956127 720 NQLKEELEKVTRLT 733
Cdd:COG4942 230 ARLEAEAAAAAERT 243
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1419-2216 |
3.97e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.02 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1419 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1498
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1499 RSLQADAKDLEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHhlqvlkesevlLQAK 1578
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDE-------EEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSK-----------LSKE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1579 RAELEKLKSQVTSQQQEMAvldrqlgHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGE 1658
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEE-------EKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAE 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1659 LNVQISERKTQLtlikqeiekeeenlqvvlrqmSKHKTELKNILDMLQLEnhelQGLKLQHDQRVSELEktqvavleekl 1738
Cdd:pfam01576 227 LQAQIAELRAQL---------------------AKKEEELQAALARLEEE----TAQKNNALKKIRELE----------- 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1739 elenlQQISQQQKGeiewqkqlLERDKREIERMTAESRALQSCVECLSKEKEDL-------QEKCDIWEKKLAQTKRVLa 1811
Cdd:pfam01576 271 -----AQISELQED--------LESERAARNKAEKQRRDLGEELEALKTELEDTldttaaqQELRSKREQEVTELKKAL- 336
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1812 aaEENSKMEQSNLEKLELN----VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEelanvqdhlnlAKQDL 1887
Cdd:pfam01576 337 --EEETRSHEAQLQEMRQKhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQ-----------AKQDS 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1888 LHTTKhqdvllseqtRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETS 1967
Cdd:pfam01576 404 EHKRK----------KLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1968 KVTLKEQqhqlekelTDQKSKLDqvlSKVLAAEERVRTLQ----EEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLA 2043
Cdd:pfam01576 474 QELLQEE--------TRQKLNLS---TRLRQLEDERNSLQeqleEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEA 542
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2044 LQKEADSMRADFSLLRNQFlterkkAEKQVASLKEALKIQRSQLEKNLLTINEDSERD-SSLLSKEQKQENSCIQKEMAt 2122
Cdd:pfam01576 543 LEEGKKRLQRELEALTQQL------EEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQlVSNLEKKQKKFDQMLAEEKA- 615
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2123 IELVAQDNHERARRLMKELNQMQYEYT-ELKKQMANQKDLERRQMEISDAMRTLKSEvKDEIRTSLKNLNQFLPELPADL 2201
Cdd:pfam01576 616 ISARYAEERDRAEAEAREKETRALSLArALEEALEAKEELERTNKQLRAEMEDLVSS-KDDVGKNVHELERSKRALEQQV 694
|
810
....*....|....*
gi 767956127 2202 EAILERNENLEGELE 2216
Cdd:pfam01576 695 EEMKTQLEELEDELQ 709
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1864-2069 |
4.13e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1864 EAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKL 1943
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1944 VQQE-----------------------------------MMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 1988
Cdd:COG4942 100 EAQKeelaellralyrlgrqpplalllspedfldavrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1989 LDQvlskvlaaeervrtlQEEERwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKK 2068
Cdd:COG4942 180 LAE---------------LEEER--AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
.
gi 767956127 2069 A 2069
Cdd:COG4942 243 T 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1419-1629 |
4.70e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1419 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1498
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1499 RSLQADAKDL--EQHKIKQEEILKEINKIVAAKDS--DFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVL 1574
Cdd:COG4942 100 EAQKEELAELlrALYRLGRQPPLALLLSPEDFLDAvrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 1575 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsmvQAKADLQEALR 1629
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIA 230
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
471-1058 |
4.79e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 471 TEEFKQLEEAIQLKKISEAgkdlLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAgkqkEIKDLQIAIDSLDSKDPKH 550
Cdd:TIGR00618 225 EKELKHLREALQQTQQSHA----YLTQKREAQEEQLKKQQLLKQLRARIEELRAQEA----VLEETQERINRARKAAPLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 551 SHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEylgtIKG 630
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE----ISC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 631 QATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEA 710
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 711 RLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAK-------------LKH 777
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnpgpltrrMQR 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 778 LQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDElrRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWE 857
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ--SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDML 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 858 RDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQM---ENEIHYLQENLKSMEEIQGLTD 934
Cdd:TIGR00618 611 ACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsirVLPKELLASRQLALQKMQSEKE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 935 lQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLhgtvMKINQE 1014
Cdd:TIGR00618 691 -QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR----TEAHFN 765
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 767956127 1015 RAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFR 1058
Cdd:TIGR00618 766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1538-2124 |
5.96e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1538 KKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVtsqqQEMAVLDRQLGHKKEELHLLQGSM 1617
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1618 VQAKADLQEalrlgetevTEKcnHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeeNLQVVLRQMSKHKTE 1697
Cdd:PRK03918 255 RKLEEKIRE---------LEE--RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-----EYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1698 LKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMtaesra 1777
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE------ 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1778 lqscVECLSKEKEDLQEKcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL--SLHNDISAM 1855
Cdd:PRK03918 393 ----LEELEKAKEEIEEE----ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1856 QQQLQEKREAVNSLQEELANVQDHLNLAKQdLLHTTKHQDVLLSEQTRLQK----DISEWANRFEDCQKEEETKQQQLQV 1931
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1932 LQNEIEENKLklvqqemmfqrLQKERESEESKLETSKVTLKEQQHQLE-------KELTDQKSKLDQVLSKVLAAEERVR 2004
Cdd:PRK03918 544 LKKELEKLEE-----------LKKKLAELEKKLDELEEELAELLKELEelgfesvEELEERLKELEPFYNEYLELKDAEK 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2005 TLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADsmRADFSLLRNQFLTERKKAEKQVASLKEaLKIQR 2084
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE-LEKRR 689
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 767956127 2085 SQLEKNLLTINEDSERdssllSKEQKQENSCIQKEMATIE 2124
Cdd:PRK03918 690 EEIKKTLEKLKEELEE-----REKAKKELEKLEKALERVE 724
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
416-773 |
6.47e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 416 MEPDEQLRNDHMNLrghtpLDTQLEDKEKkISAAQTRLSELHDEIEKAEQQILRATEefkQLEEAIQLKKISEAGKDLLY 495
Cdd:COG3096 325 LEQDYQAASDHLNL-----VQTALRQQEK-IERYQEDLEELTERLEEQEEVVEEAAE---QLAEAEARLEAAEEEVDSLK 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 496 KQLSGRLQLVNKLRQEALdlELQMEKQKQEIAGKQKEIKDLqiaidSLDSKDPKHSHMKAQKS-------GKEQQLDIMN 568
Cdd:COG3096 396 SQLADYQQALDVQQTRAI--QYQQAVQALEKARALCGLPDL-----TPENAEDYLAAFRAKEQqateevlELEQKLSVAD 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 569 KQYQQLESRLdEILSRIAKETEEikdleeqlTEGQIAANEALK-----KDLEGVISGLQEYLGTIKgQATQAQNECRKLR 643
Cdd:COG3096 469 AARRQFEKAY-ELVCKIAGEVER--------SQAWQTARELLRryrsqQALAQRLQQLRAQLAELE-QRLRQQQNAERLL 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 644 DEketLLQRLTEVEQERDQLEIVAMDAEnmrKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR----LNLRDAeA 719
Cdd:COG3096 539 EE---FCQRIGQQLDAAEELEELLAELE---AQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawLAAQDA-L 611
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 720 NQLKEEL-EKVTRLTQLeQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 773
Cdd:COG3096 612 ERLREQSgEALADSQEV-TAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1757-2011 |
6.55e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 6.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1757 QKQLLERDKREIErmTAESRALQSCVEclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE-------- 1828
Cdd:PRK11281 42 QAQLDALNKQKLL--EAEDKLVQQDLE----QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKddndeetr 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1829 -----LNVRKLQQELDQLNRDKLSLHND---------------------ISAMQQQLQEKREAVNSLQEElanvQDHLNL 1882
Cdd:PRK11281 116 etlstLSLRQLESRLAQTLDQLQNAQNDlaeynsqlvslqtqperaqaaLYANSQRLQQIRNLLKGGKVG----GKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1883 AKQDLLHTtkhQDVLLSEQTRLQKDISEWANRFEDC---QKEEETK-----QQQLQVLQNEIEENKLKLVQQEMMfqrlQ 1954
Cdd:PRK11281 192 SQRVLLQA---EQALLNAQNDLQRKSLEGNTQLQDLlqkQRDYLTAriqrlEHQLQLLQEAINSKRLTLSEKTVQ----E 264
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 767956127 1955 KERESEESKLETSKVTLKEQQ--HQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 2011
Cdd:PRK11281 265 AQSQDEAARIQANPLVAQELEinLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSER 323
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1424-2169 |
7.06e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 7.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1424 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQA 1503
Cdd:TIGR00618 188 KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1504 DAKDLEQHKIKQEEILKEINkivaakdsdfqcLSKKKEKLTEElqklQKDIEMAERNEDHHLQVLKESEVLLQAKRAELE 1583
Cdd:TIGR00618 268 RIEELRAQEAVLEETQERIN------------RARKAAPLAAH----IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRA 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1584 KLKSQVTSQQQEMAVLDRQLghkKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVksLLEELSFQKGELNVQI 1663
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLH---SQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1664 SERKTQLTLIKQEIEKEeenlQVVLRQMSKHKTELKNILDMLQLENHELQGLKlqhdQRVSELEKTQVAVLEEKLELENL 1743
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQ----GQLAHAKKQQELQQRYAELCAAAITCTAQCEK----LEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1744 QQISQQqkgeiewqkqllERDKREIERMTAESRALQSCVECLSkEKEDLQEKCDIWEKKlAQTKRVLAAAEENSKMEQSn 1823
Cdd:TIGR00618 479 EQIHLQ------------ETRKKAVVLARLLELQEEPCPLCGS-CIHPNPARQDIDNPG-PLTRRMQRGEQTYAQLETS- 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1824 leklelnVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTR 1903
Cdd:TIGR00618 544 -------EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHA 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1904 LQKDISEWANRFEDCQkEEETKQQQLQVLQNEIEENKLKLVQQEMMfQRLQKERESEESKLETSKVTLKEQQHQLEkELT 1983
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRL-HLQQCSQELALKLTALHALQLTLTQERVR-EHALSIRVLPKELLASRQLALQKMQSEKE-QLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1984 DQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL 2063
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHIEEYDREF---NEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEV 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2064 TERKKAEKQVASLKEALKIQRSQLEknlltinEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDN---HERARRLMKE 2140
Cdd:TIGR00618 771 TAALQTGAELSHLAAEIQFFNRLRE-------EDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEeqfLSRLEEKSAT 843
|
730 740
....*....|....*....|....*....
gi 767956127 2141 LNQMQYEYTELKKQMANQKDLERRQMEIS 2169
Cdd:TIGR00618 844 LGEITHQLLKYEECSKQLAQLTQEQAKII 872
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1321-1873 |
8.30e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.97 E-value: 8.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1400
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1401 LMTELEIEKslKHHEDIvdeiecieKTLLKRRSELREADRLLAEAESELsctKEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:PRK01156 244 LSSLEDMKN--RYESEI--------KTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1481 ERRAQETAVNLVKAD---QQLRSLQADAKDLEQHKIKQEEILKEINKIvAAKDSDFQCLSKKKEKLTEELQKLQKDIEMA 1557
Cdd:PRK01156 311 KQILSNIDAEINKYHaiiKKLSVLQKDYNDYIKKKSRYDDLNNQILEL-EGYEMDYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1558 ERNEDHHLQVLKESEVLLQAKRAE----LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKAdlqeALRLGET 1633
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC----GTTLGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1634 EVTEKCNHIREVKSLLEE-LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDML-QLENHE 1711
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKInELKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1712 LQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQIS----QQQKGEIEWQKQLLERDKREIE---------------RMT 1772
Cdd:PRK01156 546 DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDietnRSRSNEIKKQLNDLESRLQEIEigfpddksyidksirEIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1773 AESRALQSCVECLSKEK---EDLQEKCDIWEKKLAQTKRVlaaaEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1849
Cdd:PRK01156 626 NEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIAEIDSI----IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701
|
570 580
....*....|....*....|....
gi 767956127 1850 NDISAMQQQLQEKREAVNSLQEEL 1873
Cdd:PRK01156 702 STIEILRTRINELSDRINDINETL 725
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
572-759 |
8.42e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 8.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 572 QQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK----DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE 647
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 648 TLLQRLTEVEQERDQL----EIVAMDAE--NMRKELAELESALQEQHEvnaslqqtqgDLSAYEAELEARLNLRDAEANQ 721
Cdd:COG3206 244 ALRAQLGSGPDALPELlqspVIQQLRAQlaELEAELAELSARYTPNHP----------DVIALRAQIAALRAQLQQEAQR 313
|
170 180 190
....*....|....*....|....*....|....*...
gi 767956127 722 LKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 759
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-1127 |
8.52e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 8.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 438 QLEDKEKKISAAQTRLSELHDEIEKAE--QQILRATEEFKQLEEAIQlKKISEAGKDLLYKQLSGRLQLVNKLRQEALDL 515
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYELLKE-KEALERQKEAIERQLASLEEELEKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 516 ELQMEKQKQEIAGKQKEIKDL----QIAIDSldskdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEE 591
Cdd:TIGR02169 264 EKRLEEIEQLLEELNKKIKDLgeeeQLRVKE------KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 592 IKDLEEQLTEGQIaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaE 671
Cdd:TIGR02169 338 IEELEREIEEERK-----RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK------R 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 672 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELE-ARLNLRDAEAN--QLKEELEKVT---RLTQLEQSALQAELE 745
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEdKALEIKKQEWKleQLAADLSKYEqelYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 746 KERQALKNALGKAQFSEEKEQENSelhAKLKHLQDDNNLLKQQLKDF---------------QNHLNHVVdglVRPEEVA 810
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVRGGR---AVEEVLKASIQGVHGTVAQLgsvgeryataievaaGNRLNNVV---VEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 811 ARVDELRRKLKLG-------TGEMNIHSPSDVLGKS--------LADLQKQFS--------------------------- 848
Cdd:TIGR02169 561 KEAIELLKRRKAGratflplNKMRDERRDLSILSEDgvigfavdLVEFDPKYEpafkyvfgdtlvvedieaarrlmgkyr 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 849 ------EILARS------KWERDEAQVRERKLQEEMALQQEKLatgqEEFRQACERALEARMNFDKRQHEARIQqmenei 916
Cdd:TIGR02169 641 mvtlegELFEKSgamtggSRAPRGGILFSRSEPAELQRLRERL----EGLKRELSSLQSELRRIENRLDELSQE------ 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 917 hyLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTI 996
Cdd:TIGR02169 711 --LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 997 AKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQfRLEMEKtgvgtgansqvlE 1076
Cdd:TIGR02169 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKSIEK------------E 855
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 767956127 1077 IEKLNETMERQRTEIARLQN-VLDLTG--SDNKGGFENVLEEIAELRREVSYQN 1127
Cdd:TIGR02169 856 IENLNGKKEELEEELEELEAaLRDLESrlGDLKKERDELEAQLRELERKIEELE 909
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
572-729 |
1.08e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 572 QQLESRLDEILSRIAKETEEIKDLEEQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE-- 647
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAalEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEye 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 648 TLLQRLTEVEQERDQLEivamdaENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELE 727
Cdd:COG1579 93 ALQKEIESLKRRISDLE------DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
..
gi 767956127 728 KV 729
Cdd:COG1579 167 EL 168
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
439-963 |
1.34e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.20 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 439 LEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE--EAIQLKKISEAGKDllYKQLSGRLQLVNKLRQEALDLE 516
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEksHSITLKEIERLSIE--YNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 517 LQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLE 596
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAII 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 597 EQLTEGQIAANEALKK-----DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQerdQLEIVAMDAE 671
Cdd:PRK01156 329 KKLSVLQKDYNDYIKKksrydDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISE---ILKIQEIDPD 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 672 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAE------ANQLKEE-LEKVTRLTQLEQSALQAEL 744
Cdd:PRK01156 406 AIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcGTTLGEEkSNHIINHYNEKKSRLEEKI 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 745 EK-ERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAAR-----VDELRR 818
Cdd:PRK01156 486 REiEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRykslkLEDLDS 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 819 KLKLGTGEM---------NIHSPSDVLGKSLADLQKQFSEILAR---------SKWERDEAQVR----ERKLQEEMALQQ 876
Cdd:PRK01156 566 KRTSWLNALavislidieTNRSRSNEIKKQLNDLESRLQEIEIGfpddksyidKSIREIENEANnlnnKYNEIQENKILI 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 877 EKLATGQEEFRQacERALEARMNFDKRQHEARIQQMENEIHY----LQENLKSMEEIQGLTDLQLQEADEEKERILAQLR 952
Cdd:PRK01156 646 EKLRGKIDNYKK--QIAEIDSIIPDLKEITSRINDIEDNLKKsrkaLDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
570
....*....|.
gi 767956127 953 ELEKKKKLEDA 963
Cdd:PRK01156 724 TLESMKKIKKA 734
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1683-2222 |
1.39e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1683 NLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEeklelenlqqiSQQQKGEIEWQKQLLE 1762
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE-----------LEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1763 RDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKkLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLN 1842
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1843 RDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEE 1922
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1923 ETKQQQLQVLQNEIEENKLKL-----VQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDqkskldqvLSKVL 1997
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE--------LEKVL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1998 AAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEK-SGELLALQKEADSMRADFSLLrNQFLTERKKAEKQVASL 2076
Cdd:PRK03918 490 KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKlKEKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2077 KEALK-IQRSQLEKNLLTINEDSERDSSLLSKEQKQensciqkematIELVAQDnheraRRLMKELNQMQYEYTELKKQM 2155
Cdd:PRK03918 569 EEELAeLLKELEELGFESVEELEERLKELEPFYNEY-----------LELKDAE-----KELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767956127 2156 ANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2222
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1718-1938 |
1.45e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1718 QHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCD 1797
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1798 IWEKKLAQTKRVLAAAEENSKME----QSNLEKLELNVRKLQqeldQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEEL 1873
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLK----YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 1874 ANVQDHLNLAKQDLLHTTKHQDVLLseqTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1938
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1919-2096 |
1.63e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1919 QKEEETkQQQLQVLQNEIEENKLKLVQQEMMFQRLQKER-----ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVL 1993
Cdd:COG3206 168 LRREEA-RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1994 SKVLAAEERVRTLQEEERWcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQV 2073
Cdd:COG3206 247 AQLGSGPDALPELLQSPVI-QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEAL 325
|
170 180
....*....|....*....|...
gi 767956127 2074 ASLKEALKIQRSQLEKNLLTINE 2096
Cdd:COG3206 326 QAREASLQAQLAQLEARLAELPE 348
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
170-220 |
1.72e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 41.36 E-value: 1.72e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 767956127 170 NLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL--QDISKLKPLQDL 220
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspGAFSGLPSLRYL 54
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
76-205 |
2.20e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 46.32 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 76 SHAGVRYITEALikkltkQDNLALiKSLNLSLSKDGGKKFKYI-ENLEKCVKLEVLNLSYNLIGK------IEKLDKLLK 148
Cdd:COG5238 277 GAEGAIALAKAL------QGNTTL-TSLDLSVNRIGDEGAIALaEGLQGNKTLHTLNLAYNGIGAqgaialAKALQENTT 349
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 149 LRELNLSYNKISK------IEGIENMCNLQKLNLAGNEI-EHIPVWLGKKLK--SLRVLNLKGNKI 205
Cdd:COG5238 350 LHSLDLSDNQIGDegaialAKYLEGNTTLRELNLGKNNIgKQGAEALIDALQtnRLHTLILDGNLI 415
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1814-2190 |
2.21e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1814 EENSKMEQSNLEK-LEL--NVRKLQQELDQLNRDklslhndISAMQQQLQEKREAVNSLQEELANV--QDHLNLAKQDLl 1888
Cdd:PRK11281 55 EAEDKLVQQDLEQtLALldKIDRQKEETEQLKQQ-------LAQAPAKLRQAQAELEALKDDNDEEtrETLSTLSLRQL- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1889 htTKHQDVLLSEQTRLQKDISEwANrfedcqKEEETKQQQLQVLQNEIEENKlklvqqemmfQRLQKERESEESKLETSK 1968
Cdd:PRK11281 127 --ESRLAQTLDQLQNAQNDLAE-YN------SQLVSLQTQPERAQAALYANS----------QRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1969 VTLKEQQHQLEKELT--DQKSKLDQvlsKVLAAEErvrTLQEeerwceslektLSQTKRQLSEREQQLVEKsgELLALQk 2046
Cdd:PRK11281 188 ALRPSQRVLLQAEQAllNAQNDLQR---KSLEGNT---QLQD-----------LLQKQRDYLTARIQRLEH--QLQLLQ- 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2047 eadsmradfSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINED-SERdsslLSKEQKQENSCIQKEMATIEL 2125
Cdd:PRK11281 248 ---------EAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQlSQR----LLKATEKLNTLTQQNLRVKNW 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2126 VaqDNHERARRLMKE--------------LNQMQYEYTELK--KQMANQ-KDLERRQMEIS--------------DAMRT 2174
Cdd:PRK11281 315 L--DRLTQSERNIKEqisvlkgslllsriLYQQQQALPSADliEGLADRiADLRLEQFEINqqrdalfqpdayidKLEAG 392
|
410
....*....|....*.
gi 767956127 2175 LKSEVKDEIRTSLKNL 2190
Cdd:PRK11281 393 HKSEVTDEVRDALLQL 408
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1526-1775 |
2.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1526 VAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGH 1605
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1606 KKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTlikqeiekeeeNLQ 1685
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA-----------ELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1686 VVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQvavleekleLENLQQISQQQKGEIEWQKQL--LER 1763
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL---------AELAAELAELQQEAEELEALIarLEA 234
|
250
....*....|..
gi 767956127 1764 DKREIERMTAES 1775
Cdd:COG4942 235 EAAAAAERTPAA 246
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
515-724 |
2.41e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpkhshmkaQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVDLSE--------EAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGS 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 595 LEEQLTE-GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNecrkLRDEKETLLQRL-TEVEQERDQLEIvamDAEN 672
Cdd:COG3206 252 GPDALPElLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIA----LRAQIAALRAQLqQEAQRILASLEA---ELEA 324
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 767956127 673 MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKE 724
Cdd:COG3206 325 LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
667-893 |
2.60e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 667 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTR---LTQLEQSALQAE 743
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 744 LEKERQALKNALGKAQFSEEKEQENSELHAK--------LKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDE 815
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956127 816 LRRKLKlgtgemnihspsdVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERA 893
Cdd:COG4942 179 LLAELE-------------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
553-757 |
2.65e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 553 MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanEALK--KDLEGVISGLQ--EYLGTI 628
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--------ERLEpwGNFDLDLSLLLgfKYVSVF 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 629 KGQATQAQNECRKLRDEKETLLqrltEVEQERDQLEIVAM----DAENMRKELAELEsaLQEQHEvnaslqQTQGDLSAY 704
Cdd:PRK05771 149 VGTVPEDKLEELKLESDVENVE----YISTDKGYVYVVVVvlkeLSDEVEEELKKLG--FERLEL------EEEGTPSEL 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 705 EAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAEL--EKERQALKNALGK 757
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLeiELERAEALSKFLK 271
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1762-1992 |
2.84e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.57 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1762 ERDKReIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRV--LAAAEENSKMEQSNLEKLELNVRKLQQELD 1839
Cdd:pfam15905 91 EQDKR-LQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVneLLKAKFSEDGTQKKMSSLSMELMKLRNKLE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1840 QLNRDKLSLHNDisaMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ 1919
Cdd:pfam15905 170 AKMKEVMAKQEG---MEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIA 246
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 1920 KEEET---KQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKvtlKEQQHQLEKELTDQKSKLDQV 1992
Cdd:pfam15905 247 QLEELlkeKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREY---EEKEQTLNAELEELKEKLTLE 319
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1824-1982 |
2.94e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1824 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS--EQ 1901
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1902 TRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKE 1981
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
.
gi 767956127 1982 L 1982
Cdd:COG1579 172 I 172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
438-954 |
2.99e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ--LKKISEAG---KDLLYKQLSGRLQLVNKLRQEA 512
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDelEAQIRGNGgdrLEQLEREIERLERELEERERRR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 513 LDLELQMEKQKQEIAGKQKEIKDLQIAIdsldskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEI 592
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRAEA-------------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 593 KDLEEQ---LTEGQIAANEALKKDLEGVISGLQ---EYLgtikgqatQAQNECRKLRDEKETLL--QRLT---EVEQERD 661
Cdd:COG4913 429 ASLERRksnIPARLLALRDALAEALGLDEAELPfvgELI--------EVRPEEERWRGAIERVLggFALTllvPPEHYAA 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 662 QLEIVamDAENMRKEL------AELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLR-------DAEanQLKEELEK 728
Cdd:COG4913 501 ALRWV--NRLHLRGRLvyervrTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRfdyvcvdSPE--ELRRHPRA 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 729 VTRLTQLEQS-----------------------ALQAELEKERQALKNALGKAQfseekeQENSELHAKLKHLQDdnnlL 785
Cdd:COG4913 577 ITRAGQVKGNgtrhekddrrrirsryvlgfdnrAKLAALEAELAELEEELAEAE------ERLEALEAELDALQE----R 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 786 KQQLKDFQNHLNHVVDglvrPEEVAARVDELRRKLKlgtgemNIHSPSDVLgKSLADLQKQFSEILARSKWERDEAQVRE 865
Cdd:COG4913 647 REALQRLAEYSWDEID----VASAEREIAELEAELE------RLDASSDDL-AALEEQLEELEAELEELEEELDELKGEI 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 866 RKLQEEMALQQEKLATGQEEFRQACERA-LEARMNFDKRQHEARIQQMENEIhylQENLKSmeeiqgltdlQLQEADEEK 944
Cdd:COG4913 716 GRLEKELEQAEEELDELQDRLEAAEDLArLELRALLEERFAAALGDAVEREL---RENLEE----------RIDALRARL 782
|
570
....*....|
gi 767956127 945 ERILAQLREL 954
Cdd:COG4913 783 NRAEEELERA 792
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1349-1601 |
3.25e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1349 KRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESlmteleiekslkhhEDIVDEIECIEKTL 1428
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA--------------KLLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1429 LKRRSELREADRLLAEAESELSCTKEKTKNAVEK--FTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQAdak 1506
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA--- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1507 dleqhkikqeEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEV---LLQAKRAELE 1583
Cdd:COG3206 306 ----------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVareLYESLLQRLE 375
|
250
....*....|....*...
gi 767956127 1584 KLKSQVTSQQQEMAVLDR 1601
Cdd:COG3206 376 EARLAEALTVGNVRVIDP 393
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1757-2180 |
3.48e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.97 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1757 QKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEK-KLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQ 1835
Cdd:pfam10174 174 KKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRnQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1836 QELDQLNrdklslHNDISAMQQQLQEKR--EAVNSLQEELANVQDHLnlaKQDLlhtTKHQDVLLSEQTRLQKdiseWAN 1913
Cdd:pfam10174 254 DEVQMLK------TNGLLHTEDREEEIKqmEVYKSHSKFMKNKIDQL---KQEL---SKKESELLALQTKLET----LTN 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1914 RFEDCQKEEET-------KQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESeeskletskvtLKEQQHQLEKELTDQK 1986
Cdd:pfam10174 318 QNSDCKQHIEVlkesltaKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD-----------LTEEKSTLAGEIRDLK 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1987 SKLDQVLSKVLAAEERVRTLQEE-----------ERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSmradf 2055
Cdd:pfam10174 387 DMLDVKERKINVLQKKIENLQEQlrdkdkqlaglKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRER----- 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2056 slLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATielvaQDNHERAR 2135
Cdd:pfam10174 462 --EDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAV-----EQKKEECS 534
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 767956127 2136 RLMKELNQMQyeytelkkqmaNQKDLERRQMEISDAMRTLKSEVK 2180
Cdd:pfam10174 535 KLENQLKKAH-----------NAEEAVRTNPEINDRIRLLEQEVA 568
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
76-181 |
3.56e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 45.04 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 76 SHAGVRYITEALikklTKQDNLALIKSLNLSLSKDGGKKFKyiENLEKCVKLEVLNLSYNLIGK--IEKLDKLLK----- 148
Cdd:cd00116 178 GDAGIRALAEGL----KANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLTDagAAALASALLspnis 251
|
90 100 110
....*....|....*....|....*....|....*....
gi 767956127 149 LRELNLSYNKI------SKIEGIENMCNLQKLNLAGNEI 181
Cdd:cd00116 252 LLTLSLSCNDItddgakDLAEVLAEKESLLELDLRGNKF 290
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-597 |
3.63e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 270 EEVERLERDLEKKMIETEELK----------SKQTRFLEEIKNQDKLnksLKEEAMLQKQSCEELKSDlntknelLKQKT 339
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIEnrldelsqelSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEED-------LSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 340 IELTRACQKQYELEQElafykIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQ--IKKME 417
Cdd:TIGR02169 751 QEIENVKSELKELEAR-----IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEqkLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 418 PDEQLRNDHMN--LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeaiqlKKISEAGKDLly 495
Cdd:TIGR02169 826 LEKEYLEKEIQelQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK-----KERDELEAQL-- 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 496 KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMN------- 568
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvnmlai 978
|
330 340
....*....|....*....|....*....
gi 767956127 569 KQYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:TIGR02169 979 QEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1642-1868 |
3.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1642 IREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQ 1721
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1722 RVSELEKTQVAVLEEKLELENLQQISQQQKGEI----EWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKcd 1797
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL-- 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 1798 iwEKKLAQTKRVLAAAEENskmEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1868
Cdd:COG4942 180 --LAELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
551-1555 |
4.17e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 551 SHMKAQKSGKEQQLDIMNKQYQQLESRLDEI------LSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEy 624
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELerqlksLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 625 lgtikgQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAE----NMRKELAELESALQEQHEVNASLQQTQGD 700
Cdd:TIGR02168 247 ------ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 701 LSAYEAELEARLNLRDAEANQLKEELEKVTRLTQlEQSALQAELEKERQALKNALGKAQfsEEKEQENSELHAKLKHLQD 780
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESRLEELE--EQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 781 DNNLLkQQLKDFQNHLNHvvdglvRPEEVAARVDELRRKLklgtgemnihspsdvlgkSLADLQKQfSEILARSKWERDE 860
Cdd:TIGR02168 398 LNNEI-ERLEARLERLED------RRERLQQEIEELLKKL------------------EEAELKEL-QAELEELEEELEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 861 AQVRERKLQEEMALQQEKLATGQEEFRQAceRALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDL--QLQ 938
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAA--ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELI 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 939 EADEEKER-ILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKInqerAE 1017
Cdd:TIGR02168 530 SVDEGYEAaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV----AK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1018 ELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEK----------TGVGTGANSQVL----EIEKLNET 1083
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILerrrEIEELEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1084 MERQRTEIARLQNVLDltgsDNKGGFENVLEEIAELRREVSYQNDYISSMADPFKRRgywyfmpPPPSSKVSSHSSQATK 1163
Cdd:TIGR02168 686 IEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEELSRQISALRKDLARL-------EAEVEQLEERIAQLSK 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1164 DSGVGLKYSAStpvrkprpgqqdgkegsqpppasgywvyspIRSGLHKLFPSRDADSGGDSQEESELDDQEEppfvpppg 1243
Cdd:TIGR02168 755 ELTELEAEIEE------------------------------LEERLEEAEEELAEAEAEIEELEAQIEQLKE-------- 796
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1244 ymmytvlpdgspvpqgmalyapppPLPNNSRPLTpgtvvygpppagapmvygppppnfsipfipmgvlhcnvpehhNLEN 1323
Cdd:TIGR02168 797 ------------------------ELKALREALD------------------------------------------ELRA 810
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1324 EVSRLEDIMQHLKSKKREERWMRASKrqsEKEMEELHHNIDDLLQEKKSLECEVEELhrTVQKRQQQKDFIDGNVESLMT 1403
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAAT---ERRLEDLEEQIEELSEDIESLAAEIEEL--EELIEELESELEALLNERASL 885
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1404 ELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTEsdAEELERR 1483
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL----EGLEVRIDNLQERLSEEYSLT--LEEAEAL 959
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 1484 AQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQKDIE 1555
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE-------RYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
561-967 |
4.30e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 561 EQQLDIMNKQYQQLESRLDE--ILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGV-----ISGLQEYLGTIKgQAT 633
Cdd:COG3096 285 ERALELRRELFGARRQLAEEqyRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALrqqekIERYQEDLEELT-ERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 634 QAQNECRKLRDEKETLLQ-RLTEVEQERDQLeivamdaenmRKELAELESALQEQHEVNASLQQTQGDLSAYEAELE-AR 711
Cdd:COG3096 364 EEQEEVVEEAAEQLAEAEaRLEAAEEEVDSL----------KSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGlPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 712 LNLRDAEANQ--LKEELEKVT-RLTQLEQ-----SALQAELEKERQALKNALGKAQFSE--EKEQENSELHAKLKHLQDD 781
Cdd:COG3096 434 LTPENAEDYLaaFRAKEQQATeEVLELEQklsvaDAARRQFEKAYELVCKIAGEVERSQawQTARELLRRYRSQQALAQR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 782 NNLLKQQLKdfqnhlnhvvdglvrpeevaarvdELRRKLklgtgemnihspsdvlgKSLADLQKQFSEILARSKWERDEA 861
Cdd:COG3096 514 LQQLRAQLA------------------------ELEQRL-----------------RQQQNAERLLEEFCQRIGQQLDAA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 862 QVRERKLQEemalQQEKLATGQEEFRQACERALEARMNFDkrQHEARIQQMEN---EIHYLQENLKSMEEIQGLTDLQLQ 938
Cdd:COG3096 553 EELEELLAE----LEAQLEELEEQAAEAVEQRSELRQQLE--QLRARIKELAArapAWLAAQDALERLREQSGEALADSQ 626
|
410 420
....*....|....*....|....*....
gi 767956127 939 EADEEKERILAQLRELEKKKKLEDAKSQE 967
Cdd:COG3096 627 EVTAAMQQLLEREREATVERDELAARKQA 655
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1907-2103 |
4.53e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 4.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1907 DISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQK 1986
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1987 ------SKLDQVL---------------SKVLAAEERVRTLQEEERwcESLEKTLSQTKRQLSEREQQLveksGELLALQ 2045
Cdd:COG3883 97 rsggsvSYLDVLLgsesfsdfldrlsalSKIADADADLLEELKADK--AELEAKKAELEAKLAELEALK----AELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 767956127 2046 KEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSS 2103
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
365-1099 |
4.93e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 365 FEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDsaqaVQIKKMEPDEQLRNDHMNLRGHT-PLDTQLEDKE 443
Cdd:pfam15921 48 FTQIPIFPKYEVELDSPRKIIAYPGKEHIERVLEEYSHQVKD----LQRRLNESNELHEKQKFYLRQSViDLQTKLQEMQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 444 KKISAA---QTRLSELHDEIEKAEQQILRATEEFKQLEEaiQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQME 520
Cdd:pfam15921 124 MERDAMadiRRRESQSQEDLRNQLQNTVHELEAAKCLKE--DMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASG 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 521 KQKQEIAGKQK-EIKDLQIAIDS-LDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQ-----LESRLDEILSRIAKETEEIK 593
Cdd:pfam15921 202 KKIYEHDSMSTmHFRSLGSAISKiLRELDTEISYLKGRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEIT 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 594 DLEEQLTEGQIAAN------EALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRD---------EKETLL--QRLTEV 656
Cdd:pfam15921 282 GLTEKASSARSQANsiqsqlEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRmyedkieelEKQLVLanSELTEA 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 657 EQERDQ-----------LEIVAMDAENMRKELA------------------ELESALQEQHEVNASLQQTQGDLSAYEAE 707
Cdd:pfam15921 362 RTERDQfsqesgnlddqLQKLLADLHKREKELSlekeqnkrlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSE 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 708 LEARLNLRDAEANQLKEELEKVTRLT-QLEQSA-LQAELEKERQALKNALGKAQFS--------EEKEQENSELHAKLKH 777
Cdd:pfam15921 442 CQGQMERQMAAIQGKNESLEKVSSLTaQLESTKeMLRKVVEELTAKKMTLESSERTvsdltaslQEKERAIEATNAEITK 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 778 LQDDNNLLKQQLKDFQNHLNHVvdglvrpEEVAARVDELRRKLklgtgemnihSPSDVLGKSLADLQKQFSEILARSKWE 857
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNEGDHL-------RNVQTECEALKLQM----------AEKDKVIEILRQQIENMTQLVGQHGRT 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 858 RDEAQVRERKLQEEMALQQEKLatgqEEFRqacerALEARMNFDKRQHEARIQQMENE----IHYLQENLKSMEEIQGLT 933
Cdd:pfam15921 585 AGAMQVEKAQLEKEINDRRLEL----QEFK-----ILKDKKDAKIRELEARVSDLELEkvklVNAGSERLRAVKDIKQER 655
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 934 DLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQvfgldkelKKLKKAVATSDKLATAELTIAKDQLKSLHGT------ 1007
Cdd:pfam15921 656 DQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM--------ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamk 727
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1008 -VMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLqnllrqKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMER 1086
Cdd:pfam15921 728 vAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL------KEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
810
....*....|...
gi 767956127 1087 QRTEIARLQNVLD 1099
Cdd:pfam15921 802 LKEKVANMEVALD 814
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
245-686 |
5.19e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 5.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 245 RSLESLEGQPVTTQDRQEAFERfSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSL----KEEAML--QK 318
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreieKRLSRLeeEI 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 319 QSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQ-ELAFYKIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNM 397
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEErHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 398 FATESYIIDsaqavQIKKMEPDEQLRNDHMN----LRGHTPL-----------------DTQLEDKEKKISAAQTRLSEL 456
Cdd:PRK03918 404 EEEISKITA-----RIGELKKEIKELKKAIEelkkAKGKCPVcgrelteehrkelleeyTAELKRIEKELKEIEEKERKL 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 457 HDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDL 536
Cdd:PRK03918 479 RKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 537 QIAIDSLDSKDPKHSHMKAQKS-----------GKEQQLDIMNKQYQQL---ESRLDEILSRIAKETEEIKDLEEQLTEG 602
Cdd:PRK03918 559 AELEKKLDELEEELAELLKELEelgfesveeleERLKELEPFYNEYLELkdaEKELEREEKELKKLEEELDKAFEELAET 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 603 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELES 682
Cdd:PRK03918 639 EKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
....
gi 767956127 683 ALQE 686
Cdd:PRK03918 719 ALER 722
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1954-2171 |
5.86e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1954 QKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLS---KVLAAEERVRTLQEEERwceSLEKTLSQTKRQLSER 2030
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAlerRIAALARRIRALEQELA---ALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2031 EQQLVEKSGE----LLALQKEADSMRADFSLLRNQFLTERKKAE------KQVASLKEALKIQRSQLEKNLLTINEDSER 2100
Cdd:COG4942 96 RAELEAQKEElaelLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956127 2101 DSSLLSKEQKQENScIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDA 2171
Cdd:COG4942 176 LEALLAELEEERAA-LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1856-2144 |
5.88e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1856 QQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVL--LSEQTRLQKDISEWanrfedcQKEEETKQQQLQvlq 1933
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASA-------EREIAELEAELE--- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1934 nEIEENKLKLVQQEMMFQRLQKERESEESKLETskvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQE---EE 2010
Cdd:COG4913 679 -RLDASSDDLAALEEQLEELEAELEELEEELDE----LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2011 RWCESL-EKTLSQTKRQLSEREQQLVEKsgellaLQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIqRSQLEK 2089
Cdd:COG4913 754 RFAAALgDAVERELRENLEERIDALRAR------LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLAL-LDRLEE 826
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 2090 NLLTINEDserdssllsKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQM 2144
Cdd:COG4913 827 DGLPEYEE---------RFKELLNENSIEFVADLLSKLRRAIREIKERIDPLNDS 872
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
569-1123 |
6.41e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 569 KQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISGLQEyLGTIKGQATQAQNECRKLRDEKET 648
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPE--------LREELEKLEKEVKE-LEELKEEIEELEKELESLEGSKRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 649 LLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEK 728
Cdd:PRK03918 257 LEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 729 VTRLTQLEQsaLQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNnlLKQQLKDFQNHLNHVVDGLVRPEE 808
Cdd:PRK03918 337 EERLEELKK--KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 809 VAARVDELRRKLKLGTGEM-NIHSPSDVLGKSL-----ADLQKQFSEILARSKWERDEAQVRERKLQE-----EMALQQE 877
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELkKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERKLRKelrelEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 878 KLATGQEEFRQACERALEARMNFDKRQHEARIQQMENeihyLQENLKSME-EIQGLTD--LQLQEADEEKERILAQLREL 954
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK----LKEKLIKLKgEIKSLKKelEKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 955 EKKKKLEDAKSQEQVFGLDKELKKLKKAVAT------SDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRK 1028
Cdd:PRK03918 569 EEELAELLKELEELGFESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1029 AAQAARDLTRAEAEiELLQNLLRQKGEQFRLEMEKtgvgTGANSQVLEIEKLNETMERQRTEIARLQNVLDLtgsdnkgg 1108
Cdd:PRK03918 649 LEELEKKYSEEEYE-ELREEYLELSRELAGLRAEL----EELEKRREEIKKTLEKLKEELEEREKAKKELEK-------- 715
|
570
....*....|....*
gi 767956127 1109 FENVLEEIAELRREV 1123
Cdd:PRK03918 716 LEKALERVEELREKV 730
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
439-667 |
6.82e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 6.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 439 LEDKEKKISAAQTRLSELHDE----IEKAEQQILRATEEFKQLEeaIQLKKISEAgkdllykqlsgrlqlVNKLRQEALD 514
Cdd:PHA02562 204 IEEQRKKNGENIARKQNKYDElveeAKTIKAEIEELTDELLNLV--MDIEDPSAA---------------LNKLNTAAAK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 LELQMEKQkqeiagkQKEIKDLQ------IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 588
Cdd:PHA02562 267 IKSKIEQF-------QKVIKMYEkggvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKL 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956127 589 TEEIKDLEEQltEGQIAANEALKKDLEGVISGLQEYLGTIKGqatqaqnECRKLRDEKETLLQRLTEVEQERDQLEIVA 667
Cdd:PHA02562 340 LELKNKISTN--KQSLITLVDKAKKVKAAIEELQAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVT 409
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1794-2222 |
7.13e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1794 EKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEEL 1873
Cdd:TIGR00618 173 FPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1874 ANVQDHLNLAKQDLLHTTKHQDVLLS-EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQR 1952
Cdd:TIGR00618 253 EEQLKKQQLLKQLRARIEELRAQEAVlEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1953 LQKERESEESKlETSKVTLKEQQHQLEKELTDQKSKLDQvLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQ 2032
Cdd:TIGR00618 333 HVKQQSSIEEQ-RRLLQTLHSQEIHIRDAHEVATSIREI-SCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2033 QLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQ---------RSQLEKNLLTINEDSERDSS 2103
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLqesaqslkeREQQLQTKEQIHLQETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2104 LLSK--EQKQENSCIQKEMAT---IELVAQDNHE-----------RARRLMKELNQMQYEYTELKKQMANQKDLERRQME 2167
Cdd:TIGR00618 491 VVLArlLELQEEPCPLCGSCIhpnPARQDIDNPGpltrrmqrgeqTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 2168 ISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2222
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1312-1953 |
7.32e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1312 HCNVPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECE---VEELHRTVQKRQ 1388
Cdd:TIGR00618 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQrrlLQTLHSQEIHIR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1389 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1468
Cdd:TIGR00618 359 DAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1469 SLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKiVAAKDSDFQCLSKKKEK------ 1542
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLA-RLLELQEEPCPLCGSCIhpnpar 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1543 -LTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAK 1621
Cdd:TIGR00618 518 qDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1622 ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTEL--- 1698
Cdd:TIGR00618 598 DLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELlas 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1699 -KNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESra 1777
Cdd:TIGR00618 678 rQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV-- 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1778 lqscveclSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdisAMQQ 1857
Cdd:TIGR00618 756 --------LKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILN---LQCE 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1858 QLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQkdisewanrfedcqkEEETKQQQLQVLQNEIE 1937
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKII---------------QLSDKLNGINQIKIQFD 889
|
650
....*....|....*.
gi 767956127 1938 ENKLKLVQQEMMFQRL 1953
Cdd:TIGR00618 890 GDALIKFLHEITLYAN 905
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1805-2151 |
8.60e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 8.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1805 QTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAK 1884
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1885 QDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKL 1964
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1965 ETSKVTLKEQQHQLEKELTDQKSKLDQ---VLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGEL 2041
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKlieSLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2042 LALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMA 2121
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELA 340
|
330 340 350
....*....|....*....|....*....|
gi 767956127 2122 TIELVAQDNHERARRLMKELNQMQYEYTEL 2151
Cdd:COG4372 341 DLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1822-2195 |
9.37e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 9.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1822 SNLEKLELNVRKLQQELDQLNRDKLSLhnDISAMQQQLQEKREAVNSLQEELANVQDHlnlaKQDLLHTTKHQDVLLSEQ 1901
Cdd:COG5022 787 VDYELKWRLFIKLQPLLSLLGSRKEYR--SYLACIIKLQKTIKREKKLRETEEVEFSL----KAEVLIQKFGRSLKAKKR 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1902 TRLQKDisewANRFEDCQKEEETKQQQLQVLQNEIEE-NKLKLVQQEMMFQRLQKERESEESKLETSKVTLKE----QQH 1976
Cdd:COG5022 861 FSLLKK----ETIYLQSAQRVELAERQLQELKIDVKSiSSLKLVNLELESEIIELKKSLSSDLIENLEFKTELiarlKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1977 QLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFS 2056
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTK 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2057 LL--RNQFLTERKKAEKQVASLKEALKIQRSQLE---KNLLTINEDSERDSSLLskeqkqenscIQKEMATIELVAQDNH 2131
Cdd:COG5022 1017 QLkeLPVEVAELQSASKIISSESTELSILKPLQKlkgLLLLENNQLQARYKALK----------LRRENSLLDDKQLYQL 1086
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767956127 2132 ERARRLMKELNqmqyeytELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLP 2195
Cdd:COG5022 1087 ESTENLLKTIN-------VKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLE 1143
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1354-2081 |
9.51e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 9.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1354 KEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQQKDfidgnveslmtELEIEKSLKHHEDIVDEIECIEKTLLKRRS 1433
Cdd:COG4913 235 DDLERAHEALEDAREQIELLE-PIRELAERYAAARERLA-----------ELEYLRAALRLWFAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1434 ELREADRLLAEAESELsctkektKNAVEKFTDAKRSLLQTESDA-EELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1512
Cdd:COG4913 303 ELARLEAELERLEARL-------DALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1513 IKQEEILKEINKIVAAKdsdfqclskkKEKLTEELQKLQKDIEMAERNEDHHLQVLKEsevlLQAKRAELEKLKSQVTSQ 1592
Cdd:COG4913 376 PASAEEFAALRAEAAAL----------LEALEEELEALEEALAEAEAALRDLRRELRE----LEAEIASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1593 QQEM-AVLDRQLGHKKEELHLLqGSMVQAKADLQE------------ALRLgetEVTEKcnHIREVKSLLEELSFqKGEL 1659
Cdd:COG4913 442 LLALrDALAEALGLDEAELPFV-GELIEVRPEEERwrgaiervlggfALTL---LVPPE--HYAAALRWVNRLHL-RGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1660 NVQiserktqltlikqeiekeeeNLQVVLRQMSKHKTELKNILDMLQLENHELQG-LKLQHDQR--------VSELEKTQ 1730
Cdd:COG4913 515 VYE--------------------RVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRfdyvcvdsPEELRRHP 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1731 VAVLEEKlelenlqQISQ-QQKGEIEWQKQL-------------LERDKREIERMTAESRALQSCVECLSKEKEDLQEKC 1796
Cdd:COG4913 575 RAITRAG-------QVKGnGTRHEKDDRRRIrsryvlgfdnrakLAALEAELAELEEELAEAEERLEALEAELDALQERR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1797 DIWEKKLAQTkrvlaaaeenskMEQSNLEKLELNVRKLQQELDQLNRDklslHNDISAMQQQLQEKREAVNSLQEELAnv 1876
Cdd:COG4913 648 EALQRLAEYS------------WDEIDVASAEREIAELEAELERLDAS----SDDLAALEEQLEELEAELEELEEELD-- 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1877 qdhlnlakqdllhttkhqdvllseqtRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVqQEMMFQRLQKE 1956
Cdd:COG4913 710 --------------------------ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL-EERFAAALGDA 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1957 RESEESK-LETSKVTLKEQQHQLEKELTDQKSKLDQV-LSKVLAAEERVRTLQEEERWCESLEktlsqtkrqlserEQQL 2034
Cdd:COG4913 763 VERELREnLEERIDALRARLNRAEEELERAMRAFNREwPAETADLDADLESLPEYLALLDRLE-------------EDGL 829
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 767956127 2035 VEKSGELLALQKEAdsMRADFSLLRNQFLTERKKAEKQVASLKEALK 2081
Cdd:COG4913 830 PEYEERFKELLNEN--SIEFVADLLSKLRRAIREIKERIDPLNDSLK 874
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
442-537 |
9.83e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 9.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 442 KEKKISAAQtrlSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNKLRQEALDLELQMEK 521
Cdd:PRK12704 55 KKEALLEAK---EEIHKLRNEFEKELRERRNELQKLEKRLLQKE----------ENLDRKLELLEKREEELEKKEKELEQ 121
|
90
....*....|....*.
gi 767956127 522 QKQEIAGKQKEIKDLQ 537
Cdd:PRK12704 122 KQQELEKKEEELEELI 137
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1487-1672 |
9.88e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 9.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1487 TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQ 1566
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1567 VLKES--------------EVLLQAK-------RAE-LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADL 1624
Cdd:COG3883 87 ELGERaralyrsggsvsylDVLLGSEsfsdfldRLSaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 767956127 1625 QEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTL 1672
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1335-2179 |
1.06e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1335 LKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEceveelhrtvqkrqqqkdfidgnvESLMTELEiekslkhh 1414
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQ------------------------EQLQAETE-------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1415 edIVDEIECIEKTLLKRRSELREadrLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKA 1494
Cdd:pfam01576 55 --LCAEAEEMRARLAARKQELEE---ILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTT 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1495 DQQLRSLQADAKDLEQhkikQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIE-MAERNEDHHLQVLKESEV 1573
Cdd:pfam01576 130 EAKIKKLEEDILLLED----QNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEaMISDLEERLKKEEKGRQE 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1574 LLQAKR---AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQ---AKADLQEALRLGETEVTEKCNHIREVKS 1647
Cdd:pfam01576 206 LEKAKRkleGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaQKNNALKKIRELEAQISELQEDLESERA 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1648 LLEELSFQKGELNVQISERKTQLtlikqEIEKEEENLQVVLRqmSKHKTELKNILDMLQLE--NHE--LQGLKLQHDQRV 1723
Cdd:pfam01576 286 ARNKAEKQRRDLGEELEALKTEL-----EDTLDTTAAQQELR--SKREQEVTELKKALEEEtrSHEaqLQEMRQKHTQAL 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1724 SELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIE----RMTAESRALQSCVECLSKEKEDLQEKCDIW 1799
Cdd:pfam01576 359 EELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEhkrkKLEGQLQELQARLSESERQRAELAEKLSKL 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLS-------LHNDISAMQQQLQEKREAVNSLQEE 1872
Cdd:pfam01576 439 QSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNlstrlrqLEDERNSLQEQLEEEEEAKRNVERQ 518
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1873 LANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQR 1952
Cdd:pfam01576 519 LSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSN 598
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1953 LQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCES----------------- 2015
Cdd:pfam01576 599 LEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQlraemedlvsskddvgk 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2016 ----LEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNL 2091
Cdd:pfam01576 679 nvheLERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAEL 758
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2092 ltinEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDA 2171
Cdd:pfam01576 759 ----EDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKK 834
|
....*...
gi 767956127 2172 MRTLKSEV 2179
Cdd:pfam01576 835 LKNLEAEL 842
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
270-601 |
1.10e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 350 YELEQEL-----AFYKIDAKFEPLNyypseyAEIDKAPDEspyigksrykrnmFATESYIIDSAQA--------VQIKKM 416
Cdd:TIGR02168 764 EELEERLeeaeeELAEAEAEIEELE------AQIEQLKEE-------------LKALREALDELRAeltllneeAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 417 EPDEQLRNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYK 496
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 497 QLSGRL----QLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLqiAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQ-- 570
Cdd:TIGR02168 905 ELESKRselrRELEELREKLAQLELRLEGLEVRIDNLQERLSEE--YSLTLEEAEALENKIEDDEEEARRRLKRLENKik 982
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 767956127 571 ------------YQQLESRLDEILSRIAKETEEIKDLEEQLTE 601
Cdd:TIGR02168 983 elgpvnlaaieeYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
507-764 |
1.15e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 507 KLRQEALDLEL--QMEK-QKQEIAGKQKEIKDLQIAIDSLDSKdpkhshMKAQKSGKEQQldimNKQYQQLESRLDEILS 583
Cdd:PHA02562 154 KLVEDLLDISVlsEMDKlNKDKIRELNQQIQTLDMKIDHIQQQ------IKTYNKNIEEQ----RKKNGENIARKQNKYD 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 584 RIAKETEEIKDLEEQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE--TLLQ-------RLT 654
Cdd:PHA02562 224 ELVEEAKTIKAEIEELTD-ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQqisegpdRIT 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 655 EVEQERDQLEIVAMDAENMRKELAELESALQEQ----HEVNASLQQTQGDLSAYeaelearlnlrDAEANQLKEELEKVT 730
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskklLELKNKISTNKQSLITL-----------VDKAKKVKAAIEELQ 371
|
250 260 270
....*....|....*....|....*....|....
gi 767956127 731 RLTQLEQSALqAELEKERQALKNAlgKAQFSEEK 764
Cdd:PHA02562 372 AEFVDNAEEL-AKLQDELDKIVKT--KSELVKEK 402
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1352-1666 |
1.22e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1352 SEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDfiDGNVESLMTELE-------IEKSLKHHEDIVDEIECI 1424
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQPVEgsphvetIEEDRERVEELEAELEDL 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1425 EKTLLKRRSELREADRLlAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAvnlVKADQQlrslQAD 1504
Cdd:PRK02224 488 EEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE---AEAEEK----REA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1505 AKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSK------KKEKLTEELQKLQ-KDIEMAERNEDH--HLQVLKESEVLL 1575
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaAIADAEDEIERLReKREALAELNDERreRLAEKRERKREL 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1576 QAK--RAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGS--MVQAKADLQEALRLGETEVTEKCNHIREVKSLLEE 1651
Cdd:PRK02224 640 EAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigAVENELEELEELRERREALENRVEALEALYDEAEE 719
|
330
....*....|....*
gi 767956127 1652 LSFQKGELNVQISER 1666
Cdd:PRK02224 720 LESMYGDLRAELRQR 734
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
507-947 |
1.25e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 507 KLRQEALDLELQMEkqkQEIAGKQKeikdLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIA 586
Cdd:pfam01576 100 KMQQHIQDLEEQLD---EEEAARQK----LQLEKVTTEAKIKK---LEEDILLLEDQNSKLSKERKLLEERISEFTSNLA 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 587 KETEEIK--------------DLEEQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLL 650
Cdd:pfam01576 170 EEEEKAKslsklknkheamisDLEERLKkeEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 651 QRLTEVEQERDQLEIVAMDAENMRKELAE-LESALQEQHEVNASLQQTQGDLSAYEAELEARLNL----------RDAEA 719
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEdLESERAARNKAEKQRRDLGEELEALKTELEDTLDTtaaqqelrskREQEV 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 720 NQLKEELEKVTR--------LTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQD-------DNNL 784
Cdd:pfam01576 330 TELKKALEEETRsheaqlqeMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQakqdsehKRKK 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 785 LKQQLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLKLGTGEMN-IHSPSDVLGKSLADLQKQF---SEILARSKWERDE 860
Cdd:pfam01576 410 LEGQLQELQARLS---ESERQRAELAEKLSKLQSELESVSSLLNeAEGKNIKLSKDVSSLESQLqdtQELLQEETRQKLN 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 861 AQVRERKLQEEMALQQEKLATgQEEFRQACERALEArMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEA 940
Cdd:pfam01576 487 LSTRLRQLEDERNSLQEQLEE-EEEAKRNVERQLST-LQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEK 564
|
....*..
gi 767956127 941 DEEKERI 947
Cdd:pfam01576 565 AAAYDKL 571
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1774-2002 |
1.27e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1774 ESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLnRDKLSlhNDIS 1853
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER-REELG--ERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1854 AMQQQlqekrEAVNSLQEELANVQDHlnlakQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1933
Cdd:COG3883 94 ALYRS-----GGSVSYLDVLLGSESF-----SDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956127 1934 NEIEENKLKLvqqemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEER 2002
Cdd:COG3883 164 AELEAAKAEL-------EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1493-1596 |
1.43e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1493 KADQQLRSLQADAKD-LEQHKIKQEEILKEinKIVAAKD------SDFQCLSKKKEKlteELQKLQKDIEMAERNEDHHL 1565
Cdd:PRK12704 28 IAEAKIKEAEEEAKRiLEEAKKEAEAIKKE--ALLEAKEeihklrNEFEKELRERRN---ELQKLEKRLLQKEENLDRKL 102
|
90 100 110
....*....|....*....|....*....|.
gi 767956127 1566 QVLKESEVLLQAKRAELEKLKSQVTSQQQEM 1596
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEEL 133
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1759-2181 |
1.45e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1759 QLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQsnleklelnvrkLQQEL 1838
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA------------LEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1839 DQLNRDKLSLHNDIsamqQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvllseqtrlqkdISEWANRFEDC 1918
Cdd:COG4717 142 AELPERLEELEERL----EELRELEEELEELEAELAELQEELEELLEQLSLATEEE-------------LQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1919 QKEEETKQQQLQVLQNEIE--ENKLKLVQQEMMFQRLQKERESEESKLE-TSKVTLKEQQHQLEKELTDQKSKLDQVLSK 1995
Cdd:COG4717 205 QQRLAELEEELEEAQEELEelEEELEQLENELEAAALEERLKEARLLLLiAAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1996 VLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQlveksgELLALQKEADSMRADFSLLRNQFLTERKKAEKQVAS 2075
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELE------ELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2076 LKEALKIQRSQLEKNLLTINEDSERDSSLLSK-EQKQENSCIQKEMATIE--LVAQDNHERARRLMKELNQMQYEYTELK 2152
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAAlEQAEEYQELKEELEELEeqLEELLGELEELLEALDEEELEEELEELE 438
|
410 420
....*....|....*....|....*....
gi 767956127 2153 KQManqKDLERRQMEISDAMRTLKSEVKD 2181
Cdd:COG4717 439 EEL---EELEEELEELREELAELEAELEQ 464
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1758-2222 |
1.71e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1758 KQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQE 1837
Cdd:pfam10174 288 KNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1838 LDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLnlakqdllhttKHQDvllseqtrlqKDISEWANRFED 1917
Cdd:pfam10174 368 LQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQL-----------RDKD----------KQLAGLKERVKS 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1918 CQKEEETKQQQLQVLQNEIEEnklklvqQEMMFQRLQKERESEESKletskvtLKEQQHQLEKELTDQKSKLDQVLSKVL 1997
Cdd:pfam10174 427 LQTDSSNTDTALTTLEEALSE-------KERIIERLKEQREREDRE-------RLEELESLKKENKDLKEKVSALQPELT 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1998 AAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMrADFSLLRNQFLTERKKAEKQVASLK 2077
Cdd:pfam10174 493 EKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNA-EEAVRTNPEINDRIRLLEQEVARYK 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2078 EALKIQRSQLEKnLLTINEDSERDSSLLSKEQKQENSCIQKEMATiELVAQDNHERARRLMKELNQMQYEYTELKKQMAN 2157
Cdd:pfam10174 572 EESGKAQAEVER-LLGILREVENEKNDKDKKIAELESLTLRQMKE-QNKKVANIKHGQQEMKKKGAQLLEEARRREDNLA 649
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767956127 2158 QKDLERRQMEISDAMRTLKSEVkDEIRTSLKNLNQFLPELPADLEAI-LERNENLEGELESLKENL 2222
Cdd:pfam10174 650 DNSQQLQLEELMGALEKTRQEL-DATKARLSSTQQSLAEKDGHLTNLrAERRKQLEEILEMKQEAL 714
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1522-1981 |
1.74e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1522 INKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKEsevlLQAKRAELEKLKSQVTSQQQEMAVLDR 1601
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1602 QLGHKkeelhllqgSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEE 1681
Cdd:COG4717 124 LLQLL---------PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1682 ENLQVVLRQMSKHKTELKNILDMLQ---------LENHELQGLKLQHDQRVSELEKTQVAV----------LEEKLELEN 1742
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQeeleeleeeLEQLENELEAAALEERLKEARLLLLIAaallallglgGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1743 LQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQS 1822
Cdd:COG4717 275 IAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1823 NLEKL--ELNVRKLQQELDQL-NRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvLLS 1899
Cdd:COG4717 355 EAEELeeELQLEELEQEIAALlAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1900 EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLvQQEMMFQRLQkERESEESKLETSKVTLKEQQHQLE 1979
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ-ELEELKAELR-ELAEEWAALKLALELLEEAREEYR 510
|
..
gi 767956127 1980 KE 1981
Cdd:COG4717 511 EE 512
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1786-2298 |
1.77e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1786 SKEKEDLQEKCDIweKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRdklSLHNDISAMQQQLQEKREa 1865
Cdd:PRK01156 149 AQRKKILDEILEI--NSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKK---QIADDEKSHSITLKEIER- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1866 vnsLQEELANVQDHLNLAKQDLlhttKHQDVLLSEQTRLQKDISEWANRFEDcQKEEETKQQQLQVLQNEIEENKLKLVQ 1945
Cdd:PRK01156 223 ---LSIEYNNAMDDYNNLKSAL----NELSSLEDMKNRYESEIKTAESDLSM-ELEKNNYYKELEERHMKIINDPVYKNR 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1946 QEMM-FQRLQKERESEESKLETSKVTLkEQQHQLEKELTDQKSKLDQVLSKVLAAEE---RVRTLQEEERWCESLEKTLS 2021
Cdd:PRK01156 295 NYINdYFKYKNDIENKKQILSNIDAEI-NKYHAIIKKLSVLQKDYNDYIKKKSRYDDlnnQILELEGYEMDYNSYLKSIE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2022 QTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASL---KEALKIQRSQLEKNLLTINEDS 2098
Cdd:PRK01156 374 SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLnqrIRALRENLDELSRNMEMLNGQS 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2099 ----------ERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMK--------ELNQMQYEYTELKKQMANQKD 2160
Cdd:PRK01156 454 vcpvcgttlgEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKrkeyleseEINKSINEYNKIESARADLED 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2161 LERRQMEISDA----------MRTLKSEVKDEIRTSLKNLNQFLPELpaDLEAILERNENLEGELESLKENLPFTMNEGP 2230
Cdd:PRK01156 534 IKIKINELKDKhdkyeeiknrYKSLKLEDLDSKRTSWLNALAVISLI--DIETNRSRSNEIKKQLNDLESRLQEIEIGFP 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2231 FEEKLNFSQVHIMDEHWRG-----------EALREKLRHREDRLK---AQLRHCMSKQAEVLIKGKrQTEGTLHSLRRQV 2296
Cdd:PRK01156 612 DDKSYIDKSIREIENEANNlnnkyneiqenKILIEKLRGKIDNYKkqiAEIDSIIPDLKEITSRIN-DIEDNLKKSRKAL 690
|
..
gi 767956127 2297 DA 2298
Cdd:PRK01156 691 DD 692
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1424-1584 |
1.80e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1424 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQ--ETAVNLVKADQQLRSL 1501
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1502 QADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAernedhhLQVLKESEVLLQAKRAE 1581
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE-------LAELEAELEELEAEREE 167
|
...
gi 767956127 1582 LEK 1584
Cdd:COG1579 168 LAA 170
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
170-213 |
1.86e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 38.00 E-value: 1.86e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 767956127 170 NLQKLNLAGNEIEHIPvwLGKKLKSLRVLNLKGN-KISSLQDISK 213
Cdd:pfam12799 2 NLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
589-797 |
1.88e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 589 TEEIKDLEEQLTEGQIAANEALkkdlEGVISGLQEYlgtiKGQATQAQnECRKLRDEKETLLQRL-TEVEQERDQLEIVA 667
Cdd:PRK10929 29 TQELEQAKAAKTPAQAEIVEAL----QSALNWLEER----KGSLERAK-QYQQVIDNFPKLSAELrQQLNNERDEPRSVP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 668 --MDAENMRKELAELESAL--------QEQ---HEVNASLQQTQGDLSayeaelEARLNLRDAEaNQLKEELEKVTRLTQ 734
Cdd:PRK10929 100 pnMSTDALEQEILQVSSQLleksrqaqQEQdraREISDSLSQLPQQQT------EARRQLNEIE-RRLQTLGTPNTPLAQ 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956127 735 LEQSALQAELEKeRQALKNALGKAQFSEEKEQENSELHAKLkhLQDDNNLLKQQLKDFQNHLN 797
Cdd:PRK10929 173 AQLTALQAESAA-LKALVDELELAQLSANNRQELARLRSEL--AKKRSQQLDAYLQALRNQLN 232
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
145-206 |
1.94e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 43.27 E-value: 1.94e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956127 145 KLLKLRELNLSYNKIskiEG-----IENMCNLQKLNLAGNEIE-HIPVWLGKkLKSLRVLNLKGNKIS 206
Cdd:PLN03150 440 KLRHLQSINLSGNSI---RGnippsLGSITSLEVLDLSYNSFNgSIPESLGQ-LTSLRILNLNGNSLS 503
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1317-1512 |
1.95e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1317 EHHNLENEVSRLEDIMQHLKSKKREERWmraskRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDG 1396
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRL-----ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1397 NVEslmteleiekslkhhEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKftdAKRSLLQTESD 1476
Cdd:COG4913 338 DRL---------------EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE---AAALLEALEEE 399
|
170 180 190
....*....|....*....|....*....|....*.
gi 767956127 1477 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1512
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1397-1661 |
2.10e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1397 NVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEaesELSCTKEKTKNAVEKFTDAKRSLLqtesd 1476
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE---VLIQKFGRSLKAKKRFSLLKKETI----- 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1477 aeelerrAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDfqcLSKKKEKLTEELQKLQKDIEM 1556
Cdd:COG5022 870 -------YLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSD---LIENLEFKTELIARLKKLLNN 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1557 AERNEDHHLQVLKESEVL-LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSM---VQAKADLQEALRLGE 1632
Cdd:COG5022 940 IDLEEGPSIEYVKLPELNkLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELaelSKQYGALQESTKQLK 1019
|
250 260 270
....*....|....*....|....*....|..
gi 767956127 1633 ---TEVTEKCNHIREVKSLLEELSFQKGELNV 1661
Cdd:COG5022 1020 elpVEVAELQSASKIISSESTELSILKPLQKL 1051
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1973-2222 |
2.17e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1973 EQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMR 2052
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2053 ADFSLLRNQfLTERKKAEKQVASLKEALKiQRSQLEKNLLTINEDSERDSSLLSKEQKQENScIQKEMATIElvaqDNHE 2132
Cdd:PRK03918 266 ERIEELKKE-IEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEING-IEERIKELE----EKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2133 RARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLE 2212
Cdd:PRK03918 339 RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK 418
|
250
....*....|
gi 767956127 2213 GELESLKENL 2222
Cdd:PRK03918 419 KEIKELKKAI 428
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1436-1990 |
2.18e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1436 READRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLE---QHK 1512
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKmslQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1513 IKQEEILKEinkivaakdsDFQCLSKKKEKLTEElqklqKDIEMAERNEDH--HLQVLKESEVLLQAKRAELEKLKSQVT 1590
Cdd:pfam05483 309 MSTQKALEE----------DLQIATKTICQLTEE-----KEAQMEELNKAKaaHSFVVTEFEATTCSLEELLRTEQQRLE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1591 SQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALR-LGETEVTEKCNhiREVKSLLEELSFQKGELNVQISERKTQ 1669
Cdd:pfam05483 374 KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKiLAEDEKLLDEK--KQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1670 LTLIKQEIEKEEENLQVVLRQMSKHKTELknildmlqlENHELQGLKLQHDQRVSELEK---TQVAVLEEKLELENLQQI 1746
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTEL---------EKEKLKNIELTAHCDKLLLENkelTQEASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1747 SQQQKGEIEWQKQLLERDKREiermTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEK 1826
Cdd:pfam05483 523 INCKKQEERMLKQIENLEEKE----MNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1827 LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQ----DHLNLAKQDLLHTTKHQDVLLSEQT 1902
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKqkfeEIIDNYQKEIEDKKISEEKLLEEVE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1903 RLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLetsKVTLKEQQHQLEKEL 1982
Cdd:pfam05483 679 KAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSA---KAALEIELSNIKAEL 755
|
....*...
gi 767956127 1983 TDQKSKLD 1990
Cdd:pfam05483 756 LSLKKQLE 763
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1928-2093 |
2.18e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1928 QLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEqqhqLEKELTDQKSKLDQVLSKVLAAEER----- 2002
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED----LEKEIKRLELEIEEVEARIKKYEEQlgnvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2003 ----VRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKE 2078
Cdd:COG1579 87 nnkeYEALQKEI---ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
170
....*....|....*
gi 767956127 2079 ALKIQRSQLEKNLLT 2093
Cdd:COG1579 164 EREELAAKIPPELLA 178
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1818-2111 |
2.22e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1818 KMEQSNLEKLELNVRKLQQ-----------ELDQLNRDKLSLHNDISAMQ----QQLQEKREAVNSLQEELANVQDHLNL 1882
Cdd:PTZ00108 995 KRKEYLLGKLERELARLSNkvrfikhvingELVITNAKKKDLVKELKKLGyvrfKDIIKKKSEKITAEEEEGAEEDDEAD 1074
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1883 AKQDLLHT--TKHQDVLLSEQ-TRLQKDisewanRFEDCQKEEETKQQQLQVLQN-EIEE------NKLKLVQQEMMFQR 1952
Cdd:PTZ00108 1075 DEDDEEELgaAVSYDYLLSMPiWSLTKE------KVEKLNAELEKKEKELEKLKNtTPKDmwledlDKFEEALEEQEEVE 1148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1953 LQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCES---LEKTLSQTKRQLSE 2029
Cdd:PTZ00108 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDkpdNKKSNSSGSDQEDD 1228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2030 REQQLVEKSGELLALQKEAD-----SMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSL 2104
Cdd:PTZ00108 1229 EEQKTKPKKSSVKRLKSKKNnssksSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKK 1308
|
....*..
gi 767956127 2105 LSKEQKQ 2111
Cdd:PTZ00108 1309 KVKKRLE 1315
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
458-665 |
2.26e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.50 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 458 DEIEKAEQQILRATEEFKQLEEAIQ--LKKISE-AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIagkqKEIK 534
Cdd:TIGR01612 1500 DEADKNAKAIEKNKELFEQYKKDVTelLNKYSAlAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKI----KEIK 1575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 535 DLQIAIDsldskDPKHSHMKAQKSGKEQQLDIMNKQYQQLesRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDL 614
Cdd:TIGR01612 1576 KEKFRIE-----DDAAKNDKSNKAAIDIQLSLENFENKFL--KISDIKKKINDCLKETESIEKKISSFSIDSQDTELKEN 1648
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 767956127 615 EGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEI 665
Cdd:TIGR01612 1649 GDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEI 1699
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
572-789 |
2.26e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 572 QQLESRLDEILSRIAKETEE---IKDLEEQLTegQIAANEALKKDLEgvisglqeylgTIKGQATQAQNECRKLRDEket 648
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDklvQQDLEQTLA--LLDKIDRQKEETE-----------QLKQQLAQAPAKLRQAQAE--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 649 lLQRLTEveqerDQLEIVAMDAENMrkELAELESALQEqheVNASLQQTQGDLSAYEAE--------------------- 707
Cdd:PRK11281 103 -LEALKD-----DNDEETRETLSTL--SLRQLESRLAQ---TLDQLQNAQNDLAEYNSQlvslqtqperaqaalyansqr 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 708 -------------------------LEARLNLRDAEANQLKEELEKVTRLTQLEQS------ALQAELEKERQALKNALG 756
Cdd:PRK11281 172 lqqirnllkggkvggkalrpsqrvlLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKqrdyltARIQRLEHQLQLLQEAIN 251
|
250 260 270
....*....|....*....|....*....|....*..
gi 767956127 757 --KAQFSEE--KEQENSELHAKLKHlqddNNLLKQQL 789
Cdd:PRK11281 252 skRLTLSEKtvQEAQSQDEAARIQA----NPLVAQEL 284
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
569-961 |
2.37e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 569 KQYQQLESRLDEILSRIAKETEEIKDLE------EQLTEGQIAAneALKKDLEGVISGLQEYLGTIKGQATQAQNECRKL 642
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQrlhqafSRFIGSHLAV--AFEADPEAELRQLNRRRVELERALADHESQEQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 643 RDEKETLLQRLTEVEQERDQLEIvaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEArlnLRDAEAN-- 720
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNL--LADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSV---LQSDPEQfe 938
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 721 QLKEELEKVTrlTQLEQSALQAELEKERQALKNALG--KAQFSEEKEQENSE-LHAKLKHLQDDNNLLKQQLKDFQNHL- 796
Cdd:PRK04863 939 QLKQDYQQAQ--QTQRDAKQQAFALTEVVQRRAHFSyeDAAEMLAKNSDLNEkLRQRLEQAEQERTRAREQLRQAQAQLa 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 797 --NHVVDGLVRPEEVAAR-VDELRRKLKlgtgEMNIHSPSDVLGKSLADlQKQFSEILARSKWERDEAQVRERKLQEEMA 873
Cdd:PRK04863 1017 qyNQVLASLKSSYDAKRQmLQELKQELQ----DLGVPADSGAEERARAR-RDELHARLSANRSRRNQLEKQLTFCEAEMD 1091
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 874 LQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIH-----YLQ-ENLKSMEEIqGLTDLQLQEADEEKERi 947
Cdd:PRK04863 1092 NLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHrrelaYLSaDELRSMSDK-ALGALRLAVADNEHLR- 1169
|
410
....*....|....
gi 767956127 948 lAQLRELEKKKKLE 961
Cdd:PRK04863 1170 -DVLRLSEDPKRPE 1182
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1324-1581 |
2.37e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1324 EVSRLEDIMQHLKSKKREERWMRASKRQSE--KEMEELH--HNIDDLLQEKKSLECEVEELHRTVQKRQQQKdfidGNVE 1399
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADelKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE----ARIE 1595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1400 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1480 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQK-DIEMAE 1558
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEE 1755
|
250 260
....*....|....*....|...
gi 767956127 1559 RNEDHHLQVLKESEVLLQAKRAE 1581
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1831-2221 |
2.61e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1831 VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISE 1910
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1911 WA--NRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 1988
Cdd:COG4717 128 LPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1989 LDQvlskvlaAEERVRTLQEE-----ERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFS------- 2056
Cdd:COG4717 208 LAE-------LEEELEEAQEEleeleEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILtiagvlf 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2057 ------------LLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDS--SLLSKEQKQENSCIQKEMAT 2122
Cdd:COG4717 281 lvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEllELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2123 IELVAQDNHERARRLMKELN-QMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEV--------KDEIRTSLKNLNQF 2193
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeellealdEEELEEELEELEEE 440
|
410 420
....*....|....*....|....*...
gi 767956127 2194 LPELPADLEAILERNENLEGELESLKEN 2221
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLEED 468
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1351-2226 |
2.74e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1351 QSEKEMEELHHNIDDLLQEKKSLE-CE--VEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHedivdeiecIEKT 1427
Cdd:TIGR01612 901 EINKSIEEEYQNINTLKKVDEYIKiCEntKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDK---------FDNT 971
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1428 LLKRRSELREADRllaeaESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVkaDQQLRSLQADAKD 1507
Cdd:TIGR01612 972 LIDKINELDKAFK-----DASLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDI--EQKIEDANKNIPN 1044
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1508 LEQ------HKIkQEEILKEINK--------IVAAKDSDFQCLSKKKEKL----------------TEELQKLQKDIEMA 1557
Cdd:TIGR01612 1045 IEIaihtsiYNI-IDEIEKEIGKniellnkeILEEAEINITNFNEIKEKLkhynfddfgkeenikyADEINKIKDDIKNL 1123
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1558 ERNEDHHLQVLKESEvllqaKRAE--LEKLKSQVTSQQQemaVLDRQLGHKK-EELHLLQGSMVqakadlqealrlgeTE 1634
Cdd:TIGR01612 1124 DQKIDHHIKALEEIK-----KKSEnyIDEIKAQINDLED---VADKAISNDDpEEIEKKIENIV--------------TK 1181
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1635 VTEKCNHIREVKSLLEELSfqkgelnvQISERKTQLTLIKQEIEKEEENL-QVVLRQMSKHKTELKNILDMLQLENHELQ 1713
Cdd:TIGR01612 1182 IDKKKNIYDEIKKLLNEIA--------EIEKDKTSLEEVKGINLSYGKNLgKLFLEKIDEEKKKSEHMIKAMEAYIEDLD 1253
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1714 GLKLQHDQRVSELektqvavleeklelenlqQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQ 1793
Cdd:TIGR01612 1254 EIKEKSPEIENEM------------------GIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFS 1315
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1794 EKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLEL-NVRKLQQeldqlnrdklsLHNDISAMQQQLQEKREAVNSLQEE 1872
Cdd:TIGR01612 1316 EESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIyNILKLNK-----------IKKIIDEVKEYTKEIEENNKNIKDE 1384
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1873 LANVQDHLNLAKQDL-LHTTKHQdvllSEQTRLQKDISEWANRFEDCQK---EEETKQQQLQVLQNEIEENKLKLVQQ-E 1947
Cdd:TIGR01612 1385 LDKSEKLIKKIKDDInLEECKSK----IESTLDDKDIDECIKKIKELKNhilSEESNIDTYFKNADENNENVLLLFKNiE 1460
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1948 MMFQR----LQKERESEESKLETSKVTLKEQQHQLEKELTD-QKSKLDQVLSKVLAAEERVRTLQEEERWCE-SLEKTLS 2021
Cdd:TIGR01612 1461 MADNKsqhiLKIKKDNATNDHDFNINELKEHIDKSKGCKDEaDKNAKAIEKNKELFEQYKKDVTELLNKYSAlAIKNKFA 1540
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2022 QTKRQLSEREQQLVEKSGELLAlqkEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRS--QLEKNLLTINEDSE 2099
Cdd:TIGR01612 1541 KTKKDSEIIIKEIKDAHKKFIL---EAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSleNFENKFLKISDIKK 1617
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2100 RDSSLLSkeqkqENSCIQKEMATIELVAQDNheRARRLMKELNQMQYEYTELKKQmanQKDLERRQMEISDAMRTLKSeV 2179
Cdd:TIGR01612 1618 KINDCLK-----ETESIEKKISSFSIDSQDT--ELKENGDNLNSLQEFLESLKDQ---KKNIEDKKKELDELDSEIEK-I 1686
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 767956127 2180 KDEIRTSLKNLNQFLpelpadLEAILERNENLEGELESLKENLPFTM 2226
Cdd:TIGR01612 1687 EIDVDQHKKNYEIGI------IEKIKEIAIANKEEIESIKELIEPTI 1727
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
438-793 |
2.83e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKqleeaIQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDL 515
Cdd:TIGR04523 55 ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLK-----KNKDKINKLNSDLskINSEIKNDKEQKNKLEVELNKL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 516 ELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpkhSHMKAQKSGKEQQLDIMNKQYQQLESRLDEI----------LSRI 585
Cdd:TIGR04523 130 EKQKKENKKNIDKFLTEIKKKEKELEKLNNKY---NDLKKQKEELENELNLLEKEKLNIQKNIDKIknkllklellLSNL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 586 AKETEEIKDLEEQLTEGQiAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEI 665
Cdd:TIGR04523 207 KKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 666 VAMDAENMRKELAELESALQEQ--HEVNASLQQTQGDLSAYEAELeARLNLRDAEANQLKEELEKVTRLTQLEQSALQAE 743
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDwnKELKSELKNQEKKLEEIQNQI-SQNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 767956127 744 LEKERQALKNAL----GKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 793
Cdd:TIGR04523 365 LEEKQNEIEKLKkenqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
439-957 |
2.94e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 439 LEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQ 518
Cdd:TIGR00618 302 VTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHI 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 519 MEKQKQEIAGKQKE---------IKDLQIAIDSLDS--------KDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEi 581
Cdd:TIGR00618 382 HTLQQQKTTLTQKLqslckeldiLQREQATIDTRTSafrdlqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH- 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 582 LSRIAKETEEIKDLEEQLTegQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERD 661
Cdd:TIGR00618 461 LQESAQSLKEREQQLQTKE--QIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYA 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 662 QLEIVamdAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQ 741
Cdd:TIGR00618 539 QLETS---EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 742 AELEKERQALKN---ALGKAQFSEEKEQENSELHAKLKHL------------QDDNNLLKQQLKDFQNHLNHVVDGLVRP 806
Cdd:TIGR00618 616 ALLRKLQPEQDLqdvRLHLQQCSQELALKLTALHALQLTLtqervrehalsiRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 807 EEVAARVDELRRKL--KLGTGEMNIHSPSDVLGKSLADLQKQfsEILARSKWERDEAQVRERKLQEEMALQQEKLATGQE 884
Cdd:TIGR00618 696 KEMLAQCQTLLRELetHIEEYDREFNEIENASSSLGSDLAAR--EDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAA 773
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956127 885 EFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQeadEEKERILAQLRELEKK 957
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV---QEEEQFLSRLEEKSAT 843
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
560-957 |
2.98e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 560 KEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQL---------TEGQIAANEALKKDLEGVISGLQEYLGTIKG 630
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLqaetelcaeAEEMRARLAARKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 631 QATQAQNECRKLRDEKETLLQRLTEVEQERD--QLEIVAMDAE-----------------------NMRKELAELESALQ 685
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklQLEKVTTEAKikkleedillledqnsklskerkLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 686 EQHEVNASLQQTQGDLSAYEAELEARLNlrdaEANQLKEELEKVTRLTQLEQSALQ---AELEKERQALKNALGKaqfse 762
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLK----KEEKGRQELEKAKRKLEGESTDLQeqiAELQAQIAELRAQLAK----- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 763 eKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKL--KLGTGEMNIHSPSDVLGKSL 840
Cdd:pfam01576 241 -KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLgeELEALKTELEDTLDTTAAQQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 841 ADLQKQFSEILARSKWERDEAQVRERKLQEemalQQEKLATGQEEFRQACERALEARMNFDKRQheariQQMENEIHYLQ 920
Cdd:pfam01576 320 ELRSKREQEVTELKKALEEETRSHEAQLQE----MRQKHTQALEELTEQLEQAKRNKANLEKAK-----QALESENAELQ 390
|
410 420 430
....*....|....*....|....*....|....*..
gi 767956127 921 ENLKSMEEIQgltdlqlQEADEEKERILAQLRELEKK 957
Cdd:pfam01576 391 AELRTLQQAK-------QDSEHKRKKLEGQLQELQAR 420
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1452-1887 |
3.12e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1452 TKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQhKIKQEEILKEINKIVAAKDS 1531
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK-LLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1532 DFQCLSKKKEKLtEELQKLQKDIEMAERNEDHHLQVLKES-EVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEEL 1610
Cdd:COG4717 144 LPERLEELEERL-EELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1611 HLLQGSMVQAKADLQealRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQ 1690
Cdd:COG4717 223 EELEEELEQLENELE---AAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1691 MSKHKTELKNILDMLQLENHELQGLKlqHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIer 1770
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELL--AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAL-- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1771 mtaesralqsCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE-LNVRKLQQELDQLNRDKLSLH 1849
Cdd:COG4717 376 ----------LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaLDEEELEEELEELEEELEELE 445
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 767956127 1850 NDISAMQQQLQEKREAVNSL--QEELANVQDHLNLAKQDL 1887
Cdd:COG4717 446 EELEELREELAELEAELEQLeeDGELAELLQELEELKAEL 485
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1851-2009 |
3.24e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1851 DISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQK--EEETKQQQ 1928
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1929 LQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQE 2008
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELA----ELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
.
gi 767956127 2009 E 2009
Cdd:COG1579 167 E 167
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
436-725 |
3.41e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 42.67 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 436 DTQLEDKEKKISAAQTRLSEL------HDEIEKAEQQILRATEEF-KQLEEAIQLKKISEAGKDllykqlsgrLQLVNKL 508
Cdd:pfam13779 481 DGDLSDAERRLRAAQERLSEAlergasDEEIAKLMQELREALDDYmQALAEQAQQNPQDLQQPD---------DPNAQEM 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 509 RQEALDlelQMEKQKQEIA--GKQKEIKD----LQIAIDSLDSKDPKHSHMKAQKSGKEQQ---LDIMNKQyQQLesrLD 579
Cdd:pfam13779 552 TQQDLQ---RMLDRIEELArsGRRAEAQQmlsqLQQMLENLQAGQPQQQQQQGQSEMQQAMdelGDLLREQ-QQL---LD 624
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 580 EILSRIAKETEEIKDLEEQltEGQiaanealkkDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQe 659
Cdd:pfam13779 625 ETFRQLQQQGGQQQGQPGQ--QGQ---------QGQGQQPGQGGQQPGAQMPPQGGAEALGDLAERQQALRRRLEELQD- 692
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956127 660 rdqlEIVAMDAENMRKELAElesALQEQHEVNASLQQTQGDlSAYEAELEARLNLRD---AEANQLKEE 725
Cdd:pfam13779 693 ----ELKELGGKEPGQALGD---AGRAMRDAEEALGQGDLA-GAVDAQGRALEALRKgaqQLAEAMQQQ 753
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1467-2190 |
3.90e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1467 KRSLLQTESDAEELERRAQEtavNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE 1546
Cdd:pfam05483 91 KKWKVSIEAELKQKENKLQE---NRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARS 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1547 LQKLQKDIEMAERNEDHHLQVLKESEVLLQAkraeLEKLKSQVTSQQQEMAVldrQLGHKKEELHLLQGSMVQAKADLQE 1626
Cdd:pfam05483 168 AEKTKKYEYEREETRQVYMDLNNNIEKMILA----FEELRVQAENARLEMHF---KLKEDHEKIQHLEEEYKKEINDKEK 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1627 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQ 1706
Cdd:pfam05483 241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQ 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1707 LENHELQGLKLQHDQRVSELEKTQVAvleeklelenLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLS 1786
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAA----------HSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKS 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1787 KEKEDLQEKCDIWEKKLAQTKRVLAAaEENSKMEQSNLEKLELNVRKLQQELDQLNRDKlslHNDISAMQQQLQEKREAV 1866
Cdd:pfam05483 391 SELEEMTKFKNNKEVELEELKKILAE-DEKLLDEKKQFEKIAEELKGKEQELIFLLQAR---EKEIHDLEIQLTAIKTSE 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1867 NSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWAnrfedcqkeEETKQQQLQVLQNEIEEnklklvqq 1946
Cdd:pfam05483 467 EHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMT---------LELKKHQEDIINCKKQE-------- 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1947 emmfQRLQKERESeeskLETSKVTLKEQQHQLEKELTDQKsklDQVLSKVLAAEERVRTLQEE----ERWCESLEKTLSQ 2022
Cdd:pfam05483 530 ----ERMLKQIEN----LEEKEMNLRDELESVREEFIQKG---DEVKCKLDKSEENARSIEYEvlkkEKQMKILENKCNN 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2023 TKRQLSEREQQLVEKSGELLALQKEADSMRADFsllrNQFLTERKKAEKQVASLKEALK--IQRSQLEKNLLTINEDSER 2100
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKQL----NAYEIKVNKLELELASAKQKFEeiIDNYQKEIEDKKISEEKLL 674
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2101 DSSLLSKEQKQENSCIQKEmatIELVAQDNHERARRLM-KELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEV 2179
Cdd:pfam05483 675 EEVEKAKAIADEAVKLQKE---IDKRCQHKIAEMVALMeKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNI 751
|
730
....*....|.
gi 767956127 2180 KDEIRTSLKNL 2190
Cdd:pfam05483 752 KAELLSLKKQL 762
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1799-1961 |
4.06e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1799 WEKKLAQTKRVLAAAE-----ENSKMEQSNLEKL-ELNVR----KLQQELDQLNRDKLslhNDISAMQQQLQEKREAVNS 1868
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEakrilEEAKKEAEAIKKEaLLEAKeeihKLRNEFEKELRERR---NELQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1869 LQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanRFEDCQK--EEETKQQQLQVLQNEIEENKLKLVQQ 1946
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ---ELERISGltAEEAKEILLEKVEEEARHEAAVLIKE 177
|
170
....*....|....*
gi 767956127 1947 EMMFQRLQKERESEE 1961
Cdd:PRK12704 178 IEEEAKEEADKKAKE 192
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
86-216 |
4.24e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.57 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 86 ALIKKLTKQDNLALIKSLNLSLSKDGGKKFkyIENLEKCV-KLEVLNLSYNLI--GKIEKLDKLL----KLRELNLSYNK 158
Cdd:cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLL--AKGLKDLPpALEKLVLGRNRLegASCEALAKALranrDLKELNLANNG 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956127 159 ISKiEGIENMC-------NLQKLNLAGNEIEHIPV----WLGKKLKSLRVLNLKGNKISSLqDISKLKP 216
Cdd:cd00116 177 IGD-AGIRALAeglkancNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDA-GAAALAS 243
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
277-803 |
4.32e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 277 RDLEKKMIETEElksKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDL-------NTKNELLKQKTIELTRACQKQ 349
Cdd:TIGR04523 57 KNLDKNLNKDEE---KINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLskinseiKNDKEQKNKLEVELNKLEKQK 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 350 YELEQELAFYK--IDAKFEPLNYYPSEYAEIDKApdespyigKSRYKRNMFATESYIIDSAQAVQIKKmepdEQLRNDHM 427
Cdd:TIGR04523 134 KENKKNIDKFLteIKKKEKELEKLNNKYNDLKKQ--------KEELENELNLLEKEKLNIQKNIDKIK----NKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 428 NLrghtpldTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNK 507
Cdd:TIGR04523 202 LL-------SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----------TQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 508 LRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkhshmKAQKSGKE--QQLDIMNKQYQQLESRLDEILSRI 585
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ-------KEQDWNKElkSELKNQEKKLEEIQNQISQNNKII 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 586 AKETEEIKDLEEQLTEGQiaaNEALKKDLEgvISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEI 665
Cdd:TIGR04523 338 SQLNEQISQLKKELTNSE---SENSEKQRE--LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 666 vamDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL---TQLEQSALQA 742
Cdd:TIGR04523 413 ---QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQK 489
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 743 ELEKERQALKNALGKAQFSEEK----EQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGL 803
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKvkdlTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1684-2072 |
4.50e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 4.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1684 LQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENlQQISQQQKGEIEWQKQLLER 1763
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1764 DKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNR 1843
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1844 DKLSLhndisAMQQQLQEKR---------------------------EAVNSLQEELANVQDHLNLAKQDLLHTTKHQDV 1896
Cdd:COG4717 235 ELEAA-----ALEERLKEARlllliaaallallglggsllsliltiaGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1897 LLSEQTRLQKDISEWANRFEDCQKEEET-------KQQQLQVLQNEIE--ENKLKLVQQEMMFQRLQKERESEESKLETS 1967
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEellelldRIEELQELLREAEelEEELQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1968 KVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTlqeeerwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKE 2047
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--------EELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420
....*....|....*....|....*
gi 767956127 2048 ADSMRADFSLLRNQFLTERKKAEKQ 2072
Cdd:COG4717 462 LEQLEEDGELAELLQELEELKAELR 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1323-1727 |
4.94e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1323 NEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQqkdfIDGNVESLM 1402
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLLPLYQELEA----LEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1403 TELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREA-DRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:COG4717 146 ERLEeLEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1481 ERRAQETAVNLVKADQQLR---------------SLQADAKDLEQHKIKQEEILKEINKIVAAkdsDFQCLSKKKEKLTE 1545
Cdd:COG4717 226 EEELEQLENELEAAALEERlkearlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLLAL---LFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1546 ELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQemavLDRQLGHKKEELhLLQGSMVQAKADLQ 1625
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE----LLREAEELEEEL-QLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1626 EALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISER--------KTQLTLIKQEIEKEEENLQVVLRQMSKHKTE 1697
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeellealdEEELEEELEELEEELEELEEELEELREELAE 457
|
410 420 430
....*....|....*....|....*....|
gi 767956127 1698 LKNILDMLQlENHELQGLKLQHDQRVSELE 1727
Cdd:COG4717 458 LEAELEQLE-EDGELAELLQELEELKAELR 486
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1315-1667 |
5.13e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 5.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1315 VPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV---------- 1384
Cdd:PRK03918 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleerhely 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1385 --------QKRQQQKDFIDGNVESLMTELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSC---- 1451
Cdd:PRK03918 365 eeakakkeELERLKKRLTGLTPEKLEKELEeLEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgre 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1452 -TKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKiKQEEILKEINKIVAAKD 1530
Cdd:PRK03918 445 lTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK-ELEEKLKKYNLEELEKK 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1531 sdfqclSKKKEKLTEELQKLQKDIEMAERnEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLD-RQLGHKKEE 1609
Cdd:PRK03918 524 ------AEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKE 596
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767956127 1610 LHLLQGSMVQAKA------DLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERK 1667
Cdd:PRK03918 597 LEPFYNEYLELKDaekeleREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
435-969 |
5.27e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 5.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKqlEEAIQLKKISEAGKDLLYKqlsgrlqlvnklrqeald 514
Cdd:pfam10174 231 LQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDRE--EEIKQMEVYKSHSKFMKNK------------------ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 515 lelqMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSH----MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETE 590
Cdd:pfam10174 291 ----IDQLKQELSKKESELLALQTKLETLTNQNSDCKQhievLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTK 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 591 EIKDLEEQltEGQIAANEALKKD-----------LEGVISGLQEYLGTIKGQATQAQNECRKLRDEK---ETLLQRLTEV 656
Cdd:pfam10174 367 QLQDLTEE--KSTLAGEIRDLKDmldvkerkinvLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSsntDTALTTLEEA 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 657 EQERDQLeIVAMDAENMRKE---LAELESALQEQHEVNASLQQTQGDLSAYEAELearLNLRDAEANQLKEELEKVTRLT 733
Cdd:pfam10174 445 LSEKERI-IERLKEQREREDrerLEELESLKKENKDLKEKVSALQPELTEKESSL---IDLKEHASSLASSGLKKDSKLK 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 734 QLEqSALQAELEkERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEvaarv 813
Cdd:pfam10174 521 SLE-IAVEQKKE-ECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVEN----- 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 814 DELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQ-EKLATGQEEFRQACEr 892
Cdd:pfam10174 594 EKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQlEELMGALEKTRQELD- 672
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767956127 893 ALEARMNFDKRQHEARIQQMENeihYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKledaKSQEQV 969
Cdd:pfam10174 673 ATKARLSSTQQSLAEKDGHLTN---LRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSKKK----KTQEEV 742
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
633-768 |
5.29e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 5.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 633 TQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAmDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARL 712
Cdd:PRK12705 40 QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR-EREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 713 NLRDAEANQLKEELEKVTRLTQLEQ-----SALQAELEKERQALKNA-LGKAQFSEEKEQEN 768
Cdd:PRK12705 119 LELEELEKQLDNELYRVAGLTPEQArklllKLLDAELEEEKAQRVKKiEEEADLEAERKAQN 180
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
483-788 |
5.30e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 483 LKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDS-----------LDSKDPKHS 551
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEkenkmkdltflLEESRDKAN 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 552 HMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE----------QLTEGQIAANEALKKDLEGVISGL 621
Cdd:pfam05483 272 QLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEdlqiatkticQLTEEKEAQMEELNKAKAAHSFVV 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 622 QEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEV---NASLQQTQ 698
Cdd:pfam05483 352 TEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 699 GDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQL---EQSALQAELEKERqaLKNALGKAQF------SEEKEQENS 769
Cdd:pfam05483 432 EELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHylkEVEDLKTELEKEK--LKNIELTAHCdkllleNKELTQEAS 509
|
330
....*....|....*....
gi 767956127 770 ELHAKLKHLQDDNNLLKQQ 788
Cdd:pfam05483 510 DMTLELKKHQEDIINCKKQ 528
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
420-755 |
5.42e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 420 EQLRNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSEL---HDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkDLLYK 496
Cdd:COG4717 115 REELEKLEKLLQLLPLYQELEALEAELAELPERLEELeerLEELRELEEELEELEAELAELQEELE---------ELLEQ 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 497 QLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDI---------- 566
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglg 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 567 ---------------------------MNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALK--KDLEGV 617
Cdd:COG4717 266 gsllsliltiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelLELLDR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 618 ISGLQEYLGTIKGQATQAQNECrkLRDEKETLLQR--LTEVEQERDQLEIVAmDAENMRKELAELESALQEQHEVNASL- 694
Cdd:COG4717 346 IEELQELLREAEELEEELQLEE--LEQEIAALLAEagVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELl 422
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956127 695 -QQTQGDLSAYEAELEARLNLRDAEANQLKEELEKV-TRLTQLEQSALQAELEKERQALKNAL 755
Cdd:COG4717 423 eALDEEELEEELEELEEELEELEEELEELREELAELeAELEQLEEDGELAELLQELEELKAEL 485
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
455-1124 |
5.68e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 455 ELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIK 534
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 535 DLQIAIDSLDSKDPKHSH------------MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEG 602
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLkenkeeekekklQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 603 QIAANEALKKDLEGVISglQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELES 682
Cdd:pfam02463 334 KEEIEELEKELKELEIK--REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 683 ALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQ--------ALKNA 754
Cdd:pfam02463 412 ELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQlvklqeqlELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 755 LGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGL-------VRPEEVAARVDELRRKLKLGTGEM 827
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENykvaistAVIVEVSATADEVEERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 828 NIHSPSDVLGKSLADLQKQFSEILARSKWERD-EAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHE 906
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILnLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 907 ARIQQMENEIHYLQENLKSMEEIQGLTDlQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATS 986
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQ-ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 987 DKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEKTGV 1066
Cdd:pfam02463 731 QDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEEL 810
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 767956127 1067 GTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRREVS 1124
Cdd:pfam02463 811 KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
578-686 |
6.11e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 578 LDEILSRIAKET----EEIKDLEEQLTEGQIAAnEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:COG0542 395 IDEAAARVRMEIdskpEELDELERRLEQLEIEK-EALKKEQD---EASFERLAELRDELAELEEELEALKARWEAEKELI 470
|
90 100 110
....*....|....*....|....*....|...
gi 767956127 654 TEVEQERDQLEIVAMDAENMRKELAELESALQE 686
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAE 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2071-2222 |
6.21e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 2071 KQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTE 2150
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956127 2151 LKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2222
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1575-1795 |
7.26e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 7.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1575 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA---LRLGETEVTEKCNHIREVKSLLEE 1651
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALeqeLAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1652 LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQV 1731
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767956127 1732 AVLEEKLELENLQQISQQQKGEIEwqkQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEK 1795
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
298-731 |
7.30e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 298 EEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAE 377
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 378 IDKapdespyigksryKRNMFATESYIIDSaQAVQIKK-MEPDEQLRNDHmnlrghtpldtqledKEKKIsaaqTRLSEL 456
Cdd:COG5022 890 DVK-------------SISSLKLVNLELES-EIIELKKsLSSDLIENLEF---------------KTELI----ARLKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 457 HDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDL--LYKQLsgrlqlvNKLRQEALDLELQMEKQKQEIAGKQKEIK 534
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYedLLKKS-------TILVREGNKANSELKNFKKELAELSKQYG 1009
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 535 DLQIAIDSLDSKD----PKHSHMK---AQKSGKEQQLDI------MNKQYQQLESRLDEILSRiaKETEEIKDLEE---Q 598
Cdd:COG5022 1010 ALQESTKQLKELPvevaELQSASKiisSESTELSILKPLqklkglLLLENNQLQARYKALKLR--RENSLLDDKQLyqlE 1087
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 599 LTEGQIAANEALKKDLEGVIS-GLQEYLGTIKGQATQAQNecrkLRDEKETLLQRLTEVEQERDQLEIVAMDAENMrKEL 677
Cdd:COG5022 1088 STENLLKTINVKDLEVTNRNLvKPANVLQFIVAQMIKLNL----LQEISKFLSQLVNTLEPVFQKLSVLQLELDGL-FWE 1162
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 767956127 678 AELESALQEQHEVNaslqqTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTR 731
Cdd:COG5022 1163 ANLEALPSPPPFAA-----LSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFS 1211
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
550-664 |
7.83e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 39.89 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 550 HSHMKAQKSGKEQQLDiMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISgLQEYLGTIK 629
Cdd:pfam13851 22 RNNLELIKSLKEEIAE-LKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEE--------LRKQLENYEK-DKQSLKNLK 91
|
90 100 110
....*....|....*....|....*....|....*
gi 767956127 630 GQATQAQNECRKLRDEKETLLQRLTEVEQERDQLE 664
Cdd:pfam13851 92 ARLKVLEKELKDLKWEHEVLEQRFEKVERERDELY 126
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
304-580 |
8.06e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 8.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 304 DKLNKSLKEEAMLQKQSCEELKSDLNTK--------NELLKQKTIELTRAcQKQYELEQELAfYKIDAKFEPLNyypSEY 375
Cdd:PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQQQiktynkniEEQRKKNGENIARK-QNKYDELVEEA-KTIKAEIEELT---DEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 376 AEIDKaPDESPyiGKSRYKRNMFATESyiidSAQAVQIKKMEpdeqlrndHMNLRGHT-PLDTQ-LEDKEKKISAAQTRL 453
Cdd:PHA02562 244 LNLVM-DIEDP--SAALNKLNTAAAKI----KSKIEQFQKVI--------KMYEKGGVcPTCTQqISEGPDRITKIKDKL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 454 SELhdeiekaeqqilraTEEFKQLEEAIQlkkiseagkdllykQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEI 533
Cdd:PHA02562 309 KEL--------------QHSLEKLDTAID--------------ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA 360
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 767956127 534 KDLQIAIDSLDSKDPKHshmKAQKSGKEQQLDIMNKQYQQLESRLDE 580
Cdd:PHA02562 361 KKVKAAIEELQAEFVDN---AEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1497-1732 |
8.26e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1497 QLRSLQADAKDLEQHKIKQEEILKEINKivaakdsdfqcLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQ 1576
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAA-----------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1577 AKRAELEKLKSQVTSQQQEMA----VLDRQLGHKKEELHLLQGSMVQAKAD---LQEALRLGETEVTEKCNHIREVKSLL 1649
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAellrALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1650 EELSFQKGELNVQISERKTQLTlikqEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKT 1729
Cdd:COG4942 167 AELEAERAELEALLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
...
gi 767956127 1730 QVA 1732
Cdd:COG4942 243 TPA 245
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
677-928 |
9.24e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 677 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKeELEKVTRLTQLEQSALQAELEKERQALKnalg 756
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELA---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 757 kaqfseEKEQENSELHAKLKHLQDDnnlLKQQLKD-FQNHLNHVVDGLVRPEEVAARVDELRRklklgtgeMNIHSPSDv 835
Cdd:COG4942 87 ------ELEKEIAELRAELEAQKEE---LAELLRAlYRLGRQPPLALLLSPEDFLDAVRRLQY--------LKYLAPAR- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 836 lgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEfrqacERALEARMNFDKRQHEARIQQMENE 915
Cdd:COG4942 149 --REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|...
gi 767956127 916 IHYLQENLKSMEE 928
Cdd:COG4942 222 AEELEALIARLEA 234
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
594-793 |
9.58e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 594 DLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaenm 673
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 674 RKELAELESALQEQHEVNASLQ---------------QTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrlTQLEQS 738
Cdd:COG3883 85 REELGERARALYRSGGSVSYLDvllgsesfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEA----KLAELE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767956127 739 ALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 793
Cdd:COG3883 161 ALKAELEAAKAELEAQQ------AEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1785-1887 |
9.66e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.87 E-value: 9.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 1785 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAMQQQLQEKR 1863
Cdd:TIGR04320 252 PPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAALANAE 331
|
90 100
....*....|....*....|....
gi 767956127 1864 EAVNSLQEELANVQDHLNLAKQDL 1887
Cdd:TIGR04320 332 ARLAKAKEALANLNADLAKKQAAL 355
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
601-761 |
9.93e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 40.48 E-value: 9.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 601 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaeNMRKELAEL 680
Cdd:pfam00529 64 EAQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDL--------ARRRVLAPI 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956127 681 ESALQEQH-EVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 759
Cdd:pfam00529 136 GGISRESLvTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRAP 215
|
..
gi 767956127 760 FS 761
Cdd:pfam00529 216 VD 217
|
|
| |
