|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
260-454 |
2.56e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.51 E-value: 2.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 260 ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAV 339
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE------------ALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 340 HCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGFCEQRR 419
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190
....*....|....*....|....*....|....*
gi 767956444 420 KQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQ 454
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
64-359 |
4.00e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.45 E-value: 4.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG2956 84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 224 YRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDG 303
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAE-------------LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956444 304 AVEDFLKVLDmvtEDQEDMVRQAQRQLLLtyndfavhcyRQGAYQEGVLLLNKALR 359
Cdd:COG2956 231 ALELLRKALE---LDPSDDLLLALADLLE----------RKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
197-464 |
6.90e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 71.19 E-value: 6.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 197 LKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHALQRINR 276
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL-------------GLAYLRLGRYEEALADYEQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 277 AIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAVHCYRQGAYQEGVLLLNK 356
Cdd:COG0457 68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------------ALYNLGLALLELGRYDEAIEAYER 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 357 ALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGFCEQRRKQFQKAENHFSTAIRHN 436
Cdd:COG0457 136 ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
250 260
....*....|....*....|....*...
gi 767956444 437 PQKAQYYLYRAKSRQLLQNIFGARQDVA 464
Cdd:COG0457 216 LAALAELLLLALALLLALRLAALALYQY 243
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
63-441 |
7.91e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.96 E-value: 7.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQ 142
Cdd:TIGR02917 24 ELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 143 GQclfeqcafldalnvFSHAAELQPEKPCFRYRCMACLLALKQHqACLTLITNELKQDTTNADVYIFRARLYNFLQKPHL 222
Cdd:TIGR02917 104 GK--------------FQQVLDELPGKTLLDDEGAAELLALRGL-AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 223 --CYRDLHSA-------LLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPSLFLFRGT 293
Cdd:TIGR02917 169 alAENRFDEAralidevLTADPGNVDALLLKGD-------------LLLSLGNIELALAAYRKAIALRPNNIAVLLALAT 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 294 MYRRLQEFDGAvedflkvldmvTEDQEDMVRQAQRQLLLTYNDFAVHcYRQGAYQEGVLLLNKALR-DEQQEKGLYInRG 372
Cdd:TIGR02917 236 ILIEAGEFEEA-----------EKHADALLKKAPNSPLAHYLKALVD-FQKKNYEDARETLQDALKsAPEYLPALLL-AG 302
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956444 373 DCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQ 441
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG-------RVDEAIATLSPALGLDPDDPA 364
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
207-471 |
2.14e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.14 E-value: 2.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 207 YIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPS 286
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGN-------------LYRRRGEYDRAIRIHQKLLERDPDRAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 287 LFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKG 366
Cdd:COG2956 78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE-----ALRLLAEIY-------EQEGDWEKAIEVLERLLKLGPENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 367 LYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYR 446
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG-------DYEEAIAALERALEQDPDYLPALPRL 218
|
250 260
....*....|....*....|....*
gi 767956444 447 AKSRQLLQNIFGARQDVATVLLLNP 471
Cdd:COG2956 219 AELYEKLGDPEEALELLRKALELDP 243
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
338-473 |
6.16e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.98 E-value: 6.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 338 AVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceq 417
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG---- 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956444 418 rrkQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQ 473
Cdd:COG4783 87 ---DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
333-472 |
6.34e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.49 E-value: 6.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 333 TYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKM 412
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 413 GfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPK 472
Cdd:COG0457 90 G-------RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPD 142
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
261-475 |
1.45e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.64 E-value: 1.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 261 LAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEfdgAVEDFLKVLDMVTEDQEDMVRQAQRQLLLTYNDFAVH 340
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAA---LAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 341 CYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrk 420
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG------- 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767956444 421 QFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQPK 475
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
260-398 |
3.65e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 3.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 260 ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAV 339
Cdd:COG4783 13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE------------ARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 767956444 340 HCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQD 398
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
260-444 |
4.50e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.10 E-value: 4.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 260 ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAV 339
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------------AYLNLGE 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 340 HCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGAntRMGLLQEKMGFCEQRr 419
Cdd:COG3914 155 ALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA--HSNLLFALRQACDWE- 231
|
170 180
....*....|....*....|....*
gi 767956444 420 kQFQKAENHFSTAIRHNPQKAQYYL 444
Cdd:COG3914 232 -VYDRFEELLAALARGPSELSPFAL 255
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
210-446 |
5.04e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.01 E-value: 5.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 210 RARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIENNPLDPSLFL 289
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 290 frgtmyRRLQEFDGAVEDFLKVLdmvtedqedmvrQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYI 369
Cdd:COG3914 89 ------QALGRYEEALALYRRAL------------ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767956444 370 NRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYR 446
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG-------RLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
288-472 |
5.85e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.21 E-value: 5.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 288 FLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKGL 367
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVE-----AHLALGNLY-------RRRGEYDRAIRIHQKLLERDPDRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 368 YINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQekmgfceQRRKQFQKAENHFSTAIRHNPQKAQYYLYRA 447
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------EQEGDWEKAIEVLERLLKLGPENAHAYCELA 151
|
170 180
....*....|....*....|....*
gi 767956444 448 KSRQLLQNIFGARQDVATVLLLNPK 472
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKLDPD 176
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
64-280 |
6.21e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.72 E-value: 6.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 767956444 224 YRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIEN 280
Cdd:COG0457 164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
62-214 |
1.70e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 62 REYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDnckHLErltfVLYL 141
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD---FAE----AYLN 151
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956444 142 QGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLY 214
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
270-399 |
3.95e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.71 E-value: 3.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 270 ALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQllltyndfavhcYRQGAYQE 349
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL------------LAAGDTEE 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 767956444 350 GVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDE 399
Cdd:COG4235 70 AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
368-475 |
4.15e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.02 E-value: 4.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 368 YINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRA 447
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-------RYEEALADYEQALELDPDDAEALNNLG 83
|
90 100
....*....|....*....|....*...
gi 767956444 448 KSRQLLQNIFGARQDVATVLLLNPKQPK 475
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAE 111
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
60-188 |
4.98e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 4.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 60 KVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVL 139
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-------PEAR 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 767956444 140 YLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQA 188
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
367-474 |
6.75e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.16 E-value: 6.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 367 LYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYR 446
Cdd:COG4785 75 LYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG-------DYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100
....*....|....*....|....*...
gi 767956444 447 AKSRQLLQNIFGARQDVATVLLLNPKQP 474
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDP 175
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
140-414 |
2.81e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.82 E-value: 2.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 140 YLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQK 219
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 220 PHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQ 299
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLL-------------AEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 300 EFDGAVEDFLKVLdmvtEDQEDMVRqAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLG 379
Cdd:COG2956 159 DYDEAIEALEKAL----KLDPDCAR-ALLLLAELY-------LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250 260 270
....*....|....*....|....*....|....*
gi 767956444 380 NLAFAEADYQQALALSPQDEGANTRMGLLQEKMGF 414
Cdd:COG2956 227 DPEEALELLRKALELDPSDDLLLALADLLERKEGL 261
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
291-438 |
3.74e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.20 E-value: 3.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 291 RGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKGLYIN 370
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPE-----AFALLGEIL-------LQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956444 371 RGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQ 438
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG-------RPDEAIAALEKALELDPD 138
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
88-338 |
8.54e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.17 E-value: 8.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 88 LHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqcaFLDALNVFSHAAELQP 167
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR-------YEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 168 EKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKM 247
Cdd:COG0457 74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 248 VAQAQQARQDAGILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQ 327
Cdd:COG0457 154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
|
250
....*....|.
gi 767956444 328 RQLLLTYNDFA 338
Cdd:COG0457 234 RLAALALYQYR 244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
190-327 |
1.45e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.09 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 190 LTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQH 269
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL-------------AEALLAAGDTEE 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 767956444 270 ALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQ 327
Cdd:COG4235 70 AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
58-181 |
1.94e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.54 E-value: 1.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKhlerltf 137
Cdd:COG3914 109 PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------- 181
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 767956444 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLL 181
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALR 225
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
321-447 |
1.07e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 321 DMVRQAQRQLLLTYNDF------AVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALAL 394
Cdd:COG4235 1 EAIARLRQALAANPNDAegwlllGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 767956444 395 SPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRA 447
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQG-------DYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
63-244 |
1.15e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.23 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQ 142
Cdd:COG3914 46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 143 GQclfeqcaFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHL 222
Cdd:COG3914 126 GR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
|
170 180
....*....|....*....|..
gi 767956444 223 CYRDLHSALLLNPKHPQARMLL 244
Cdd:COG3914 199 AIAAYRRALELDPDNADAHSNL 220
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
58-211 |
1.87e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 51.84 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTF 137
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY-------AY 142
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956444 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLIT-----NELKQDTTNADVYIFRA 211
Cdd:COG4785 143 AYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEdwataYLLQGDTEEARELFKLA 221
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
264-434 |
1.91e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 51.84 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 264 QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAqrqllLTYndfavhcYR 343
Cdd:COG4785 86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG-----IAL-------YY 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 344 QGAYQEGVLLLNKALRDEQQEKGLYINRgdcffqlgNLAFAEADYQQALALSPQDEGANTrmgllqekmgfceQRRKQFQ 423
Cdd:COG4785 154 LGRYELAIADLEKALELDPNDPERALWL--------YLAERKLDPEKALALLLEDWATAY-------------LLQGDTE 212
|
170
....*....|.
gi 767956444 424 KAENHFSTAIR 434
Cdd:COG4785 213 EARELFKLALA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
346-471 |
2.01e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 346 AYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKA 425
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG-------DKDEA 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 767956444 426 ENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNP 471
Cdd:COG5010 108 KEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
349-477 |
3.14e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 349 EGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENH 428
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-------DTEEAEEL 73
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 767956444 429 FSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQPKDA 477
Cdd:COG4235 74 LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
64-425 |
3.15e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.68 E-value: 3.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 64 YYSRGQQCLEQ-ADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRrAYSLQQD-----NCKHLERL-- 135
Cdd:TIGR00990 162 YYSNRAACHNAlGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT-ASCIIDGfrneqSAQAVERLlk 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 136 TFVLYLQGQCLFEQCAFLDAlnVFSHAAELQPEKPCFRYRCMACLLALKQH----QACLTLITNELKQDTTNAD-VYIFR 210
Cdd:TIGR00990 241 KFAESKAKEILETKPENLPS--VTFVGNYLQSFRPKPRPAGLEDSNELDEEtgngQLQLGLKSPESKADESYEEaARAFE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 211 ARLYNFLQKPHLCYRDLHSALL--LNPKHPQARMLLQKMV----AQAQQARQDAGILAVQGKLQHALQRINRAIENNPLD 284
Cdd:TIGR00990 319 KALDLGKLGEKEAIALNLRGTFkcLKGKHLEALADLSKSIeldpRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 285 PSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTE-------------------DQEDMVRQAQRQLLLT---YNDFAVHCY 342
Cdd:TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDfifshiqlgvtqykegsiaSSMATFRRCKKNFPEApdvYNYYGELLL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 343 RQGAYQEGVLLLNKALRDEQQEKGLY------INRGDCFFQ-LGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGFC 415
Cdd:TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYmnvlplINKALALFQwKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558
|
410
....*....|
gi 767956444 416 EQRRKQFQKA 425
Cdd:TIGR00990 559 DEALKLFERA 568
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
374-472 |
3.79e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.24 E-value: 3.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 374 CFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENhFSTAIRHNPQKAQYYLYRAKSRQLL 453
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-------RYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
90
....*....|....*....
gi 767956444 454 QNIFGARQDVATVLLLNPK 472
Cdd:COG3063 73 GDYDEALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
324-425 |
4.95e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 4.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 324 RQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANT 403
Cdd:COG5010 47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126
|
90 100
....*....|....*....|..
gi 767956444 404 RMGLLQEKMGFCEQRRKQFQKA 425
Cdd:COG5010 127 NLAALLLSLGQDDEAKAALQRA 148
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
59-448 |
5.73e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.91 E-value: 5.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 59 LKVREyysRGQQCLEQADWETAVLLFSRALHLDPQLVdFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERltfv 138
Cdd:TIGR00990 128 AKLKE---KGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNR---- 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 139 lylqgqclfeQCAFLDALNVFSHAAeLQPEKPC----FRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRArly 214
Cdd:TIGR00990 200 ----------RANAYDGLGKYADAL-LDLTASCiidgFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVG--- 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 215 NFLQ--KPHLCYRDLHSALLLNPKhpQARMLLQKmvaqaqqarqdaGILAVQGKLQHALQRINRAIEN----NPLDPSLF 288
Cdd:TIGR00990 266 NYLQsfRPKPRPAGLEDSNELDEE--TGNGQLQL------------GLKSPESKADESYEEAARAFEKaldlGKLGEKEA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 289 L---FRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQLLL-----TYNDFavhcyrqgayqegvlllNKALRD 360
Cdd:TIGR00990 332 IalnLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELgdpdkAEEDF-----------------DKALKL 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 361 EQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKA 440
Cdd:TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG-------SIASSMATFRRCKKNFPEAP 467
|
....*...
gi 767956444 441 QYYLYRAK 448
Cdd:TIGR00990 468 DVYNYYGE 475
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
64-281 |
1.13e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.11 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-------AHAYCELA 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 767956444 224 YRDLHSALLLNPKHPQARMLLQkmvaqaqqarqdagILAVQGKLQHALQRINRAIENN 281
Cdd:COG2956 232 LELLRKALELDPSDDLLLALAD--------------LLERKEGLEAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
80-213 |
1.31e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 80 AVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQGQCLFEQCAFLDALNVF 159
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------ADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 767956444 160 SHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARL 213
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
64-233 |
1.33e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 49.62 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQG 143
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 144 QclfeqcaFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG0457 159 R-------YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
|
170
....*....|
gi 767956444 224 YRDLHSALLL 233
Cdd:COG0457 232 ALRLAALALY 241
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
64-168 |
1.36e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.31 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALYLLG 92
|
90 100
....*....|....*....|....*
gi 767956444 144 QCLFEQCAFLDALNVFSHAAELQPE 168
Cdd:COG4235 93 LAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
42-425 |
5.58e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 5.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 42 FQSICDVKPKVTGLTVPLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVdfYALRAEAYLQLC--DFSSAAQNLR 119
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL--YAKLGLAQLALAenRFDEARALID 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 120 RAYSLQQDNCKhlerltfVLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQ 199
Cdd:TIGR02917 184 EVLTADPGNVD-------ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKK 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 200 DTTNADVYIFRArLYNFLQKPHLCYRD-LHSALLLNP-----------------KHPQARMLLQKMVAQAQQARQDAGIL 261
Cdd:TIGR02917 257 APNSPLAHYLKA-LVDFQKKNYEDAREtLQDALKSAPeylpalllagaseyqlgNLEQAYQYLNQILKYAPNSHQARRLL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 262 AV----QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQLLLTYNDF 337
Cdd:TIGR02917 336 ASiqlrLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 338 AVHCYRQGAYQE------GVLLLNKALRDEQQEKGL----------------YINRGDCFFQLGNLAFAEADYQQALALS 395
Cdd:TIGR02917 416 AIADLETAAQLDpelgraDLLLILSYLRSGQFDKALaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKALSIE 495
|
410 420 430
....*....|....*....|....*....|
gi 767956444 396 PQDEGANTRMGLLQEKMGFCEQRRKQFQKA 425
Cdd:TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKV 525
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
72-168 |
1.39e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQnLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqca 151
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD------- 74
|
90
....*....|....*..
gi 767956444 152 FLDALNVFSHAAELQPE 168
Cdd:COG3063 75 YDEALAYLERALELDPS 91
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
64-143 |
1.80e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.30 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQG 143
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
264-475 |
1.88e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 264 QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDqEDMVRQAQRQLLLtyndfavhcyr 343
Cdd:TIGR02917 35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK-NQVLPLLARAYLL----------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 344 QGAYQEGV-LLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDegANTRMGLLQEKM---------- 412
Cdd:TIGR02917 103 QGKFQQVLdELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALaenrfdeara 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 413 -------------------GFCEQRRKQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQ 473
Cdd:TIGR02917 181 lidevltadpgnvdalllkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260
|
..
gi 767956444 474 PK 475
Cdd:TIGR02917 261 PL 262
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
204-364 |
1.96e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 204 ADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPL 283
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGE-------------ILLQLGDLDEAIVLLHEALELDPD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 284 DPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQrqllltyndfavHCYRQGAYQEGVLLLNKALRDEQQ 363
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLAR------------AYRALGRPDEAIAALEKALELDPD 138
|
.
gi 767956444 364 E 364
Cdd:COG4783 139 D 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
72-167 |
3.44e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqca 151
Cdd:COG5010 65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ------- 137
|
90
....*....|....*.
gi 767956444 152 FLDALNVFSHAAELQP 167
Cdd:COG5010 138 DDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
380-472 |
3.84e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.91 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 380 NLAFAEADYQQALALSPQDEGANTRMGLLQEKM--GFCEQRRKQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIF 457
Cdd:COG4785 45 ALALAAAALAAAALAAERIDRALALPDLAQLYYerGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYD 124
|
90
....*....|....*
gi 767956444 458 GARQDVATVLLLNPK 472
Cdd:COG4785 125 AALEDFDRALELDPD 139
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
63-128 |
4.00e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 45.31 E-value: 4.00e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767956444 63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDN 128
Cdd:cd24142 2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
295-396 |
9.88e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.31 E-value: 9.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 295 YRRLQEFDGAVEDFLKVLdmvtedqedmvrQAQRQLLLTYNDFAVHCYRQGAYQEGvLLLNKALRDEQQEKGLYINRGDC 374
Cdd:COG3063 2 YLKLGDLEEAEEYYEKAL------------ELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAEL 68
|
90 100
....*....|....*....|..
gi 767956444 375 FFQLGNLAFAEADYQQALALSP 396
Cdd:COG3063 69 LLELGDYDEALAYLERALELDP 90
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
329-397 |
1.08e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 1.08e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767956444 329 QLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKG--------LYINRGDCFFQLGNLAFAEADYQQALALSPQ 397
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGpdhpltatTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
368-398 |
1.29e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 1.29e-04
10 20 30
....*....|....*....|....*....|.
gi 767956444 368 YINRGDCFFQLGNLAFAEADYQQALALSPQD 398
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
76-124 |
1.46e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 44.01 E-value: 1.46e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 767956444 76 DWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSL 124
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL 65
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
74-471 |
1.59e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.30 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 74 QADWETAVLLFSRALHLDPQLVdfYALR--AEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclFEQCA 151
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYAPNSH--QARRllASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD--FEKAA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 152 FLdalnvFSHAAELQPEkpcfryrcmacllalkqhqacltlitnelkqdttNADVYIFRARLYNFLQKPHLCYRDLHSAL 231
Cdd:TIGR02917 384 EY-----LAKATELDPE----------------------------------NAAARTQLGISKLSQGDPSEAIADLETAA 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 232 LLNPKHPQARMLLqkmvaqaqqarqdagILAV--QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFL 309
Cdd:TIGR02917 425 QLDPELGRADLLL---------------ILSYlrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 310 KVL----------------DMVTEDQEDMVRQAQRQLLLTYNDFAVHC------YRQGAYQEGVLLLNKALRDEQQEKGL 367
Cdd:TIGR02917 490 KALsiepdffpaaanlariDIQEGNPDDAIQRFEKVLTIDPKNLRAILalaglyLRTGNEEEAVAWLEKAAELNPQEIEP 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 368 YINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQekmgfceQRRKQFQKAENHFSTAIRHNPQKAQYYLYRA 447
Cdd:TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ-------LAAGDLNKAVSSFKKLLALQPDSALALLLLA 642
|
410 420
....*....|....*....|....
gi 767956444 448 KSRQLLQNIFGARQDVATVLLLNP 471
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALELKP 666
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
58-279 |
1.66e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.20 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTF 137
Cdd:TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 138 VLYLQG-----QCLFEQCA--FLDALNVFSHAAELQPEKPCFRYrcmacllALKQHQACLTLiTNELKQDTTNADVYIFR 210
Cdd:TIGR00990 442 TQYKEGsiassMATFRRCKknFPEAPDVYNYYGELLLDQNKFDE-------AIEKFDTAIEL-EKETKPMYMNVLPLINK 513
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767956444 211 ARLY-----NFLQKPHLCYRdlhsALLLNPKHPQARMLLQKMvaqaqqarqdagiLAVQGKLQHALQRINRAIE 279
Cdd:TIGR00990 514 ALALfqwkqDFIEAENLCEK----ALIIDPECDIAVATMAQL-------------LLQQGDVDEALKLFERAAE 570
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
342-437 |
1.81e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 342 YRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEAdYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQ 421
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG-------D 74
|
90
....*....|....*.
gi 767956444 422 FQKAENHFSTAIRHNP 437
Cdd:COG3063 75 YDEALAYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
138-282 |
2.61e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.95 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFL 217
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956444 218 QKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNP 282
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLAR-------------AYRALGRPDEAIAALEKALELDP 137
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
58-143 |
3.01e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTF 137
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
|
....*.
gi 767956444 138 VLYLQG 143
Cdd:COG2956 255 LERKEG 260
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
372-413 |
3.30e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.22 E-value: 3.30e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 767956444 372 GDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMG 413
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
113-244 |
4.12e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.82 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 113 SAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQCLFEQCAFLDALNVFSHAAELQPEKP-CFRYRCMAcLLALKQHQACLT 191
Cdd:COG4785 50 AAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAeAYNNRGLA-YLLLGDYDAALE 128
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 767956444 192 LITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLL 244
Cdd:COG4785 129 DFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
342-447 |
7.27e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 342 YRQGAYQEGVLLLNKALR----DEQQEKGLYiNRGDCFFQLGNLAFAEADYQQALALSPQDEGAntRMGLLqeKMGFCEQ 417
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKrypnSPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA--PDALL--KLGLSYL 78
|
90 100 110
....*....|....*....|....*....|....*
gi 767956444 418 RRKQFQKAENHFSTAIRHNP-----QKAQYYLYRA 447
Cdd:COG1729 79 ELGDYDKARATLEELIKKYPdseaaKEARARLARL 113
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
101-178 |
9.99e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.07 E-value: 9.99e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956444 101 RAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLtfvlylqGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMA 178
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELL-------GEILLELGDVEEAREVLLRAIELDPDGGYEKYLYLG 76
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
368-398 |
1.00e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.00e-03
10 20 30
....*....|....*....|....*....|.
gi 767956444 368 YINRGDCFFQLGNLAFAEADYQQALALSPQD 398
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
139-247 |
1.26e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 139 LYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQ 218
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100
....*....|....*....|....*....
gi 767956444 219 KPHLCYRDLHSALLLNPKHPQARMLLQKM 247
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
323-449 |
1.35e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 40.40 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 323 VRQAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGAN 402
Cdd:TIGR02521 30 AAKIRVQLALGY-------LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL 102
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 767956444 403 TRMGLLqekmgFCEQrrKQFQKAENHFSTAIrhnpqKAQYYLYRAKS 449
Cdd:TIGR02521 103 NNYGTF-----LCQQ--GKYEQAMQQFEQAI-----EDPLYPQPARS 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
64-128 |
4.13e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.29 E-value: 4.13e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956444 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDN 128
Cdd:COG4235 54 LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
204-361 |
5.36e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.63 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 204 ADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIENNPL 283
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956444 284 DPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAVHCYRQGAYQEGVLLLNKALRDE 361
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------------AYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
367-397 |
7.96e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.04 E-value: 7.96e-03
10 20 30
....*....|....*....|....*....|.
gi 767956444 367 LYINRGDCFFQLGNLAFAEADYQQALALSPQ 397
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
359-441 |
8.27e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 37.70 E-value: 8.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 359 RDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQ 438
Cdd:TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-------ELEKAEDSFRRALTLNPN 97
|
...
gi 767956444 439 KAQ 441
Cdd:TIGR02521 98 NGD 100
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
72-444 |
9.24e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 38.53 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclfEQCA 151
Cdd:TIGR02917 340 LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD---PSEA 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 152 FLDalnvFSHAAELQPEKPcfRYRCMACLLALKQHQ--ACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHS 229
Cdd:TIGR02917 417 IAD----LETAAQLDPELG--RADLLLILSYLRSGQfdKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 230 ALLLNPKHPQARMLLQKMVAQaqqarqdagilavQGKLQHALQRINRAIENNPLDPSLFLfrgtMYRRLQEFDGAVEDfl 309
Cdd:TIGR02917 491 ALSIEPDFFPAAANLARIDIQ-------------EGNPDDAIQRFEKVLTIDPKNLRAIL----ALAGLYLRTGNEEE-- 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 310 kVLDMVTEDQEDMVRQAQRQLLLtyndfAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQ 389
Cdd:TIGR02917 552 -AVAWLEKAAELNPQEIEPALAL-----AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 767956444 390 QALALSPQDEGANTRMGLLQEKMGFCEQRRKQFQKAENHFSTAIRHNPQKAQYYL 444
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
68-108 |
9.31e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 33.98 E-value: 9.31e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 767956444 68 GQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQL 108
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
180-294 |
9.33e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.52 E-value: 9.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956444 180 LLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdaG 259
Cdd:COG4235 27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL--------------G 92
|
90 100 110
....*....|....*....|....*....|....*.
gi 767956444 260 ILAVQ-GKLQHALQRINRAIENNPLDPSLFLFRGTM 294
Cdd:COG4235 93 LAAFQqGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| |
