|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
9-598 |
2.50e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.68 E-value: 2.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 9 ALNELLLRKEEEWRALQAHRTQLQEAALQDtrsQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 88
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEA---ELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 89 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAfQEHRLELERVHSDKNGEIDHHREQYENLK----------WTLER 158
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEeeleeaeaelAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 159 KLEELDGELALQRQELLLEFESKMR--KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNA 236
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEalRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 237 ELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTR 316
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 317 VLELQAHCETLE---AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAwdAQIAQLSKEMVSRDLQIQTLQEEEVKLKA 393
Cdd:COG1196 525 AVAVLIGVEAAYeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 394 QVArSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQ 473
Cdd:COG1196 603 LVA-SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 474 EVVLKAVTLERDQAVQALRmhglprpgAQMLLRQHEEEiskdfpsseiQRLREQNTSLRNAIAQMRKEMEALshqipppi 553
Cdd:COG1196 682 EELAERLAEEELELEEALL--------AEEEEERELAE----------AEEERLEEELEEEALEEQLEAERE-------- 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 767997349 554 QTAAESTDANQPDPEAGGDAATPDYVLA-LEAEIRTLKHKFKTLEK 598
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
155-743 |
1.30e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 155 TLERKLEELDGELALqrqelllefeskmrkrehefrlqadnmsntalsreLKVKLLHKELEALKEAGAKAAESLQRAEAT 234
Cdd:COG1196 217 ELKEELKELEAELLL-----------------------------------LKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 235 NAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAvkgahVEQLQELQ 314
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL-----EEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 315 TRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQ 394
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 395 VARSQQDIERYKQQLSLAVERERslERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQE 474
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEE--EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 475 VVLKAVTLERDQAVQALRMHGLprPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQ 554
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLL--AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 555 TAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAG 634
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 635 QAGGSVQAGQAGGSVQAGPVSSGLALRKLGDRVQLLN-LLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQV 713
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAeEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590
....*....|....*....|....*....|
gi 767997349 714 AELGKHLRIAQHGGAEPSGRKQPPASDAVA 743
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDL 762
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
16-545 |
2.18e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 2.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 16 RKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEdfvynlqvLEERDLELERYDAAFAQAREWEEARRAEVSEL 95
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--------LEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 96 KIEAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSDKNGEIDHHREQyenlkwtlerkLEELDGELALQRQELL 175
Cdd:COG1196 378 EEELEELAEELLEALRA--------AAELAAQLEELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 176 LEFESKMRKREHEFRLQADNMSNTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM 255
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELL-----EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 256 SRARVKDLEDKLHSVQLTRKKEEETF---------KRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAhcET 326
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAAleaalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA--AA 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 327 LEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYK 406
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 407 QQLSLAVERERSLERDQVQLGLDWQRRcDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQ 486
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEA-LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767997349 487 AVQALRMHGLPRPGAQMLLRQHEEEIS-------------------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEAL 545
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEalgpvnllaieeyeeleerYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
82-601 |
3.39e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 3.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 82 REWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEH----RLELERVHSDKNGEIDHHREQYENlkwtLE 157
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaeLEELRLELEELELELEEAQAEEYE----LL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 158 RKLEELDGELALQRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 235
Cdd:COG1196 295 AELARLEQDIARLEERRreLEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 236 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQT 315
Cdd:COG1196 375 AEAEEELEELAEELLEAL----RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 316 RVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKS-------------AWDAQIAQLSKEMVSRDLQIQ 382
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLlleaeadyegfleGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 383 TLQEEEVKLKAQVA--------------RSQQDIERYKQQ-------LSLAVERERSLERDQVQLG-LDWQRRCDDIERD 440
Cdd:COG1196 530 IGVEAAYEAALEAAlaaalqnivveddeVAAAAIEYLKAAkagratfLPLDKIRARAALAAALARGaIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 441 QIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS------- 513
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEelaerla 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 514 KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKF 593
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
....*...
gi 767997349 594 KTLEKHLE 601
Cdd:COG1196 770 ERLEREIE 777
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-545 |
1.03e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.87 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 16 RKEEEWRALQAHRTQLQEAALQDTRsQLEEAQgklrclqedfvynlQVLEERDLELERY---DAAFAQAREWEEARRAEV 92
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDAR-KAEEAR--------------KAEDARKAEEARKaedAKRVEIARKAEDARKAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 93 SE-----LKIEAAK----LRQAL----AREARKVEELQ--------QQQQLAFQEHRLELERVHSDKNGEIDHHREQYEN 151
Cdd:PTZ00121 1169 ARkaedaKKAEAARkaeeVRKAEelrkAEDARKAEAARkaeeerkaEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEE 1248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 152 LKWTLERKLEELDGELALQRQELLLEFESK----MRK----------REHEFRLQADNMSNTALSRELKVKLLHKELEAL 217
Cdd:PTZ00121 1249 RNNEEIRKFEEARMAHFARRQAAIKAEEARkadeLKKaeekkkadeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 218 KEAGA---KAAESLQRAEATNAELERKlqsrAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEEtfKRKHEELDRLARE 294
Cdd:PTZ00121 1329 KKADAakkKAEEAKKAAEAAKAEAEAA----ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE--KKKADEAKKKAEE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 295 --KDAVLVAVKGAHVEQLQELQTRVLELQahcETLEAQLRRAEWRQADTAKEKdaaIDQLREDASTVKSAWDAQIAQLSK 372
Cdd:PTZ00121 1403 dkKKADELKKAAAAKKKADEAKKKAEEKK---KADEAKKKAEEAKKADEAKKK---AEEAKKAEEAKKKAEEAKKADEAK 1476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 373 EMVSRDLQIQTLQE--EEVKLKAQVARSQQDIERYKQQLSLAVERERS--LERDQVQLGLDWQRRCDDIER-DQIQKSEA 447
Cdd:PTZ00121 1477 KKAEEAKKADEAKKkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdeAKKAEEAKKADEAKKAEEKKKaDELKKAEE 1556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 448 LIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQmlLRQHEEEISKDFPSSEIQRLREQ 527
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE--AKKAEEAKIKAEELKKAEEEKKK 1634
|
570
....*....|....*...
gi 767997349 528 NTSLRNAIAQMRKEMEAL 545
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEEL 1652
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
222-549 |
1.61e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 222 AKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRK--KEEETFKRKHEELDRLAREKDAVL 299
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 300 VAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRA--EWRQADTA-KEKDAAIDQLREDASTVKSAWD---AQIAQLSKE 373
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeELKALREAlDELRAELTLLNEEAANLRERLEsleRRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 374 MVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIE--RDQIQKSEALIQG 451
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRelESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 452 LSMAKSQVAAKLQETEQALQE-QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS----------------- 513
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlaaieeyeelk 999
|
330 340 350
....*....|....*....|....*....|....*...
gi 767997349 514 --KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 549
Cdd:TIGR02168 1000 erYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
32-545 |
2.71e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.22 E-value: 2.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 32 QEAALQDTRSQLEEAQGKlrclqeDFVYNLQVLE----ERDLELERYDAAFAQAREWEEA----------RRAEVSELKI 97
Cdd:PRK02224 185 QRGSLDQLKAQIEEKEEK------DLHERLNGLEselaELDEEIERYEEQREQARETRDEadevleeheeRREELETLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 98 EAAKLRQALAREARKveelQQQQQLAFQEHRLELERVHSDKNGEIDhhreqyenlkwtlERKLEELDGELALQRQELLLE 177
Cdd:PRK02224 259 EIEDLRETIAETERE----REELAEEVRDLRERLEELEEERDDLLA-------------EAGLDDADAEAVEARREELED 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 178 FESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM-- 255
Cdd:PRK02224 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfg 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 256 -SRARVKDLEDKLHSVQLTR---KKEEETFKRKHEELDRLAREKDAVLVA---------VKGA-HVEQLQELQTRVLELQ 321
Cdd:PRK02224 402 dAPVDLGNAEDFLEELREERdelREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGSpHVETIEEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 322 AHCETLEAQLRRAEWR--QADTAKEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQ 399
Cdd:PRK02224 482 AELEDLEEEVEEVEERleRAEDLVEAEDRIERLEERREDL----EELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 400 QDIERYKQQLSLAVERERSLERDQVQLgldwqrrcdDIERDQIQKSEALIQGLSMAKSQVaAKLQETEQALQEQEVVLKA 479
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAEL---------KERIESLERIRTLLAAIADAEDEI-ERLREKREALAELNDERRE 627
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767997349 480 VTLERDQAVQALR--MHGLPRPGAQMLLRQHEEEISKdfPSSEIQRLREQNTSLRNAIAQMRKEMEAL 545
Cdd:PRK02224 628 RLAEKRERKRELEaeFDEARIEEAREDKERAEEYLEQ--VEEKLDELREERDDLQAEIGAVENELEEL 693
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-528 |
5.31e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.56 E-value: 5.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 15 LRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKlrclqedfvynlqvlEERDLELERYDAAFA----QAREWEEARRA 90
Cdd:PTZ00121 1193 LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE---------------AVKKAEEAKKDAEEAkkaeEERNNEEIRKF 1257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 91 EVSELKIEAAKLRQALAREARKVEelqqqqqlafqehrlELERVHSDKNGEidhhreqyENLKWTLERKLEELDGELALQ 170
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKAD---------------ELKKAEEKKKAD--------EAKKAEEKKKADEAKKKAEEA 1314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 171 RQelllefESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQ 250
Cdd:PTZ00121 1315 KK------ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 251 DLEAMSRARVKDLEDKLHSVQLTRKKEEetfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETL--- 327
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAA---KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkk 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 328 --------EAQLRRAEWRQADTAKEK----DAAIDQLREDASTVKSAWDAQIAQLSKemvsrdlQIQTLQEEEVKLKAQV 395
Cdd:PTZ00121 1466 aeeakkadEAKKKAEEAKKADEAKKKaeeaKKKADEAKKAAEAKKKADEAKKAEEAK-------KADEAKKAEEAKKADE 1538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 396 ARSQQDIeRYKQQLSLAVERERSLERDQV-QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQE 474
Cdd:PTZ00121 1539 AKKAEEK-KKADELKKAEELKKAEEKKKAeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 767997349 475 VVLKAVTLERDQAVqalrmhglpRPGAQMLLRQHEEEISKdfpSSEIQRLREQN 528
Cdd:PTZ00121 1618 AKIKAEELKKAEEE---------KKKVEQLKKKEAEEKKK---AEELKKAEEEN 1659
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
274-814 |
1.25e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 274 RKKEEETFKRKHEELDRLAREKDavLVAVKGAHVEQLQ---ELQTRVLELQAHCETLEAQLRRAEWRQAdtaKEKDAAID 350
Cdd:COG1196 171 KERKEEAERKLEATEENLERLED--ILGELERQLEPLErqaEKAERYRELKEELKELEAELLLLKLREL---EAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 351 QLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDW 430
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 431 QRRCDDIERD---------QIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGA 501
Cdd:COG1196 326 AELEEELEELeeeleeleeELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 502 QMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIpppIQTAAESTDANQPDPEAGGDAAtpdyvlA 581
Cdd:COG1196 406 EEAEEALLERLERL--EEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEEALLELLAELLEEAA------L 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 582 LEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQAGPVSSGLALR 661
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 662 KLGDRVQLLNLLVTRLRQKVLREPLEPAALQRELPR--------------EVDQVHLEVLELRKQVAELGKHLRIAQHGG 727
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAalargaigaavdlvASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 728 AEPSGRKQPPASDAVALGREGLTkRGPMEAEDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMG 807
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGS-AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
....*..
gi 767997349 808 NRLRAEL 814
Cdd:COG1196 714 EERLEEE 720
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
32-322 |
6.46e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 6.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 32 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREAR 111
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 112 KVEELQQQQQLAFQEHRLELERVHsdkngEIDHHREQYENLKWTLERKLEELDGELALQRQELllefeSKMRKREHEFRL 191
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLE-----EAEEELAEAEAEIEELEAQIEQLKEELKALREAL-----DELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 192 QADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE---RKLQSRAGELQDLEAMSRARVKDLEDKLH 268
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEeliEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 767997349 269 SVQLTRKKEEETFKRKHEELDRLaREKdavlvavKGAHVEQLQELQTRVLELQA 322
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEEL-REK-------LAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
181-509 |
1.53e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 181 KMRKREHEFRLQAdnmSNTALSRelkVKLLHKELEalkeagaKAAESLQR-AEATNAELERKLQSRAGELqdleAMSRAR 259
Cdd:TIGR02168 171 KERRKETERKLER---TRENLDR---LEDILNELE-------RQLKSLERqAEKAERYKELKAELRELEL----ALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 260 VKDLEDKLHSVQLTRKKEEetfkRKHEELDRLAREKDAVLVAVKGAHVE---QLQELQTRVLELQAHCETLEAQLRRAEW 336
Cdd:TIGR02168 234 LEELREELEELQEELKEAE----EELEELTAELQELEEKLEELRLEVSEleeEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 337 RQA--------------------DTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVA 396
Cdd:TIGR02168 310 RLAnlerqleeleaqleelesklDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 397 RSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 476
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
330 340 350
....*....|....*....|....*....|...
gi 767997349 477 LKAVTLERDQAVQALRMHGLPRPGAQMLLRQHE 509
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
33-418 |
2.02e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 33 EAALQDTrSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAevSELKIEAAKLRQALAREARK 112
Cdd:TIGR02169 173 EKALEEL-EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL--KEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 113 veelqqqqqlafQEHRLELERVHSDKNGEIdhhrEQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHefrlq 192
Cdd:TIGR02169 250 ------------EEELEKLTEEISELEKRL----EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER----- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 193 adnmsntalsrelKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQL 272
Cdd:TIGR02169 309 -------------SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT----EEYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 273 TRKKEEETFKRKHEELDRLAREKDAvLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQL 352
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKLEK-LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767997349 353 REDastvksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERS 418
Cdd:TIGR02169 451 KKQ--------EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
94-410 |
3.00e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 94 ELKIEAAKLRQALAREARKVEELQQQQQLAFQEHrlelervhsdkngeidhhrEQYENLKWTLERKLEELDGELALQRQE 173
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKEL-------------------EELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 174 lLLEFESKMRKREHEFRLQADNMSNtalsrelkvklLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 253
Cdd:TIGR02168 735 -LARLEAEVEQLEERIAQLSKELTE-----------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 254 AMS---RARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLvavkgahvEQLQELQTRVLELQAHCETLEAQ 330
Cdd:TIGR02168 803 EALdelRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--------EDIESLAAEIEELEELIEELESE 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 331 LRRAEWRQAdtakEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLS 410
Cdd:TIGR02168 875 LEALLNERA----SLEEALALLRSELEEL----SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
3-419 |
1.13e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.48 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 3 PLGSEPALNELLLRK-EEEWRALQAHRTQLQEA--ALQDTRSQLEEAQGKLRCLQED-----FVYNLQVLEERDLELERY 74
Cdd:COG4717 61 PQGRKPELNLKELKElEEELKEAEEKEEEYAELqeELEELEEELEELEAELEELREElekleKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 75 DAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW 154
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 155 TLERKLEELDgelALQRQELLLEFESKMRKREHEFRLQA-----DNMSNTALSRELKVK-----------LLHKELEALK 218
Cdd:COG4717 221 ELEELEEELE---QLENELEAAALEERLKEARLLLLIAAallalLGLGGSLLSLILTIAgvlflvlgllaLLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 219 EAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfkRKHEELDRLAREKDAV 298
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL--EEELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 299 LVAVKGAHVEQLQELQTRV---LELQAHCETLEAQLRR-AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEM 374
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAeeyQELKEELEELEEQLEElLGELEELLEALDEEELEEELEELEEELEELEEELEELREEL 455
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 767997349 375 VSRDLQIQTLQEEEvklkaQVARSQQDIERYKQQLSLAVERERSL 419
Cdd:COG4717 456 AELEAELEQLEEDG-----ELAELLQELEELKAELRELAEEWAAL 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
226-514 |
1.21e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 226 ESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDRLAREKDAVLVAVKG- 304
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE----QEEEKLKERLEELEEDLSSLEQEIENVKSe 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 305 -AHVE-QLQELQTRVLELQAHCETLEAQLRRAEWRQadtakekdaaIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQ-- 380
Cdd:TIGR02169 760 lKELEaRIEELEEDLHKLEEALNDLEARLSHSRIPE----------IQAELSKLEEEVSRIEARLREIEQKLNRLTLEke 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 381 -----IQTLQEEEVKLKAQVARSQQDIERYKQQLSlavERERSLERDQVQLgLDWQRRCDDIERDqIQKSEALIQGLSMA 455
Cdd:TIGR02169 830 ylekeIQELQEQRIDLKEQIKSIEKEIENLNGKKE---ELEEELEELEAAL-RDLESRLGDLKKE-RDELEAQLRELERK 904
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 767997349 456 KSQVAAKLQETEQALQEQEVVLKAVtLERDQAVQALRMHGLPRPGAQMLLRQHEEEISK 514
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEAL-EEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
10-717 |
1.55e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 10 LNELLLRKEEEWRALQAHRTQLQEAA------LQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQARE 83
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELaeleekLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 84 WEEARRAEVSELKIEAaklrQALAREARKVEELQQQQQLAFQEHRL-ELERVHSDKNGEIDHHREQYEnlkwTLERKLEE 162
Cdd:TIGR02168 394 QIASLNNEIERLEARL----ERLEDRRERLQQEIEELLKKLEEAELkELQAELEELEEELEELQEELE----RLEEALEE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 163 LDGELALQRQELLLEFESKMRKREHEFRLQadNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 242
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLE--RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 243 QSRageLQDLEamsrarVKDLEDKLHSVQLTrkKEEETFKRKHEELDRLAREKdavlvaVKGAHVEQLQElQTRVLELQA 322
Cdd:TIGR02168 544 GGR---LQAVV------VENLNAAKKAIAFL--KQNELGRVTFLPLDSIKGTE------IQGNDREILKN-IEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 323 HCETLEAQLRRA-EWRQADT--AKEKDAAIDQLRE----------DASTVKSAW---------DAQIAQLSKEMVSRDLQ 380
Cdd:TIGR02168 606 DLVKFDPKLRKAlSYLLGGVlvVDDLDNALELAKKlrpgyrivtlDGDLVRPGGvitggsaktNSSILERRREIEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 381 IQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIER--DQIQKSEALIQGLSMAKSQ 458
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleERIAQLSKELTELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 459 VAAKLQETEQALQEQEVVLKAVTLERDQAVQALrmhglprpgaQMLLRQHEEEiskdfpSSEIQRLREQNTSLRNAIAQM 538
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEEL----------KALREALDEL------RAELTLLNEEAANLRERLESL 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 539 RKEMEALSHQIpppiQTAAESTDANQPDpeaggdaatpdyVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQP 618
Cdd:TIGR02168 830 ERRIAATERRL----EDLEEQIEELSED------------IESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 619 SVRTSTettggSAQAGQAGGSVQAGQAGGSVQAGPVSSgLALRKLGDRVQLLNLLvTRLRQKVLREPLEPAALQRELPRE 698
Cdd:TIGR02168 894 SELEEL-----SEELRELESKRSELRRELEELREKLAQ-LELRLEGLEVRIDNLQ-ERLSEEYSLTLEEAEALENKIEDD 966
|
730
....*....|....*....
gi 767997349 699 VDQVHLEVLELRKQVAELG 717
Cdd:TIGR02168 967 EEEARRRLKRLENKIKELG 985
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
9-303 |
2.33e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 2.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 9 ALNELLLRKEEEWRALQAHRTQLQ------EAALQDTRSQLEEAQGKLRCLqedfvynLQVLEERDLELERYDAAFAQAR 82
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSkeltelEAEIEELEERLEEAEEELAEA-------EAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 83 EWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngeIDHHREQYENLKWTLERKLEE 162
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 163 LDGELALQRQELllefeskmrkreHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 242
Cdd:TIGR02168 878 LLNERASLEEAL------------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767997349 243 QSRAG-ELQDLEAMSRARVKDLEDKLHSV-QLTRKKEE---------ETFKRKHEELDRLAREKDAVLVAVK 303
Cdd:TIGR02168 946 SEEYSlTLEEAEALENKIEDDEEEARRRLkRLENKIKElgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
156-421 |
4.28e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 4.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 156 LERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNtalsrelKVKLLHKELEALKEAGAKAAESLQRAEATN 235
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSEL-----RRIENRLDELSQELSDASR-------KIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 236 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKR-KHEELDRLAREKDAVLVAVKGAHVEQLQELQ 314
Cdd:TIGR02169 747 SSLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 315 TRVLE---LQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSA------WDAQIAQLSKEMVSRDLQIQTLQ 385
Cdd:TIGR02169 823 RLTLEkeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdLESRLGDLKKERDELEAQLRELE 902
|
250 260 270
....*....|....*....|....*....|....*.
gi 767997349 386 EEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER 421
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-615 |
4.87e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 14 LLRKEEEWRALQAH----RTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEARR 89
Cdd:TIGR02168 215 YKELKAELRELELAllvlRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 90 AEVSELKIEAAKLrqalarEARKVEELQQQQQLAFQEHRLELERVHSDKngeidhHREQYENLKWTLERKLEELDGELAL 169
Cdd:TIGR02168 288 KELYALANEISRL------EQQKQILRERLANLERQLEELEAQLEELES------KLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 170 QRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQS-RA 246
Cdd:TIGR02168 356 LEAELeeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 247 GELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREkdavlVAVKGAHVEQLQELQTRVLELQAHCET 326
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE-----LAQLQARLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 327 LEAQLRR---------------AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQiAQLSKEMVS-------RDLQIQTL 384
Cdd:TIGR02168 511 LLKNQSGlsgilgvlselisvdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFL-KQNELGRVTflpldsiKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 385 QEEEVKLKAQVARSQQDIERYKQQLSLAVER--ERSLERDQVQLGLDWQRRCDDIER------DQI----------QKSE 446
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKKLRPGYRivtldgDLVrpggvitggsAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 447 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhGLPRPGAQMLLRQHEEEISKDFPSSEIQRLRE 526
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE--QLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 527 QNTSLRNAIAQMRKEMEALSHQI----PPPIQTAAESTDANQPDPEAGGDAATPDYVL-ALEAEIRTLKHKFKTLEKHLE 601
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLeeaeEELAEAEAEIEELEAQIEQLKEELKALREALdELRAELTLLNEEAANLRERLE 827
|
650
....*....|....
gi 767997349 602 DVLDPLKMSSPHAE 615
Cdd:TIGR02168 828 SLERRIAATERRLE 841
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
12-402 |
7.21e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 7.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 12 ELLLRKEEEWRALQAHRTQLQEAALQD-TRSQLEEAQGKLRclqedfvynlqvlEERDLELERYDAAfaQAREWEEARRA 90
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADeAKKKAEEAKKKAD-------------EAKKAAEAKKKAD--EAKKAEEAKKA 1524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 91 EVSELKIEAAKlrqalAREARKVEELQQQQQLAFQEhrlELERVHSDKNGEidhhreqyenlkwtlERKLEELDGELALQ 170
Cdd:PTZ00121 1525 DEAKKAEEAKK-----ADEAKKAEEKKKADELKKAE---ELKKAEEKKKAE---------------EAKKAEEDKNMALR 1581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 171 RQELLLEFEskmRKREHEFrlqadnMSNTALSRELKVKLLHKELEALKEagakaAESLQRAEATNAELERKLQSRAGELQ 250
Cdd:PTZ00121 1582 KAEEAKKAE---EARIEEV------MKLYEEEKKMKAEEAKKAEEAKIK-----AEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 251 DLEAMSRArvkDLEDKLHSVQLTRKKEEEtfKRKHEELDRLAREKDAVLVAVKGAHVE--QLQELQTRVLELQAHCEtle 328
Cdd:PTZ00121 1648 KAEELKKA---EEENKIKAAEEAKKAEED--KKKAEEAKKAEEDEKKAAEALKKEAEEakKAEELKKKEAEEKKKAE--- 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 329 aQLRRAEWRQADTAKE--KDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI---------QTLQEEEVKLKAQVAR 397
Cdd:PTZ00121 1720 -ELKKAEEENKIKAEEakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrkekeavieEELDEEDEKRRMEVDK 1798
|
....*
gi 767997349 398 SQQDI 402
Cdd:PTZ00121 1799 KIKDI 1803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
226-601 |
1.01e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 226 ESLQRAEATNAELERklqsrageLQDLeamsrarVKDLEDKLHSVQLTRKKEEEtFKRKHEELDRLARekdAVLVAVKGA 305
Cdd:TIGR02168 176 ETERKLERTRENLDR--------LEDI-------LNELERQLKSLERQAEKAER-YKELKAELRELEL---ALLVLRLEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 306 HVEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtakekdaaidqlredastvksawdAQIAQLSKEMVSRDLQIQTLQ 385
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELE-----------------------------EKLEELRLEVSELEEEIEELQ 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 386 EEEVKLKAQVARSQQDIERYKQQLSLAverERSLERDQVQLGLDWQRRcdDIERDQIQKSEALIQGLSMAKSQVAAKLQE 465
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANL---ERQLEELEAQLEELESKL--DELAEELAELEEKLEELKEELESLEAELEE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 466 TEQALQEQEVVLKAVTLERDQAvqalrmhglprpgaqmllrqheeeiskdfpSSEIQRLREQNTSLRNAIAQMRKEMEAL 545
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLETL------------------------------RSKVAQLELQIASLNNEIERLEARLERL 412
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 767997349 546 SHQipppIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLE 601
Cdd:TIGR02168 413 EDR----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
70-489 |
1.52e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 70 ELERYDAAFAQAREW----EEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHH 145
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAkkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 146 REQYENLKwtleRKLEEL-DGELALQRQELLLEFESKmrKREHEFRLQADNMSNTALSRELKVKllhKELEALKEAGAKA 224
Cdd:PTZ00121 1489 KKKAEEAK----KKADEAkKAAEAKKKADEAKKAEEA--KKADEAKKAEEAKKADEAKKAEEKK---KADELKKAEELKK 1559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 225 AESLQRAEATNAELERKLQS--RAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAV 302
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 303 KGAHVEQLQELQTRVLELQAHCETLE-AQLRRAEWRQADTAK----EKDAAIDQLREDASTVKSAWDA---------QIA 368
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAKkaeeDEKKAAEALKKEAEEAKKAEELkkkeaeekkKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 369 QLSKEMVSRDLQIQTL--QEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQ----VQLGLDWQRRCDDIERDQI 442
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAkkEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeavIEEELDEEDEKRRMEVDKK 1799
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 767997349 443 QK-----SEALIQGlSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQ 489
Cdd:PTZ00121 1800 IKdifdnFANIIEG-GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
9-596 |
2.16e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 9 ALNELLLRKEEEWRALQAHRTQLQ------EAALQDTRSQLEEAQGKLRCLQEDFvynLQVLEERDLELERYDAAFAQAR 82
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLErqleelEAQLEELESKLDELAEELAELEEKL---EELKEELESLEAELEELEAELE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 83 EWE----------EARRAEVSELKIEAAKLR----------QALAREARKVEELQQQQQLAFQEHRL-ELERVHSDKNGE 141
Cdd:TIGR02168 369 ELEsrleeleeqlETLRSKVAQLELQIASLNneierlearlERLEDRRERLQQEIEELLKKLEEAELkELQAELEELEEE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 142 IDHHREQYEnlkwTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKE-------- 213
Cdd:TIGR02168 449 LEELQEELE----RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgv 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 214 --------------LEAL------------KEAGAKAAESLQRAE------------------ATNAELERKLQSRAGEL 249
Cdd:TIGR02168 525 lselisvdegyeaaIEAAlggrlqavvvenLNAAKKAIAFLKQNElgrvtflpldsikgteiqGNDREILKNIEGFLGVA 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 250 QDLE-------------------------AMSRARVKDLE---------------------DKLHSVQLTRKKEEETFKR 283
Cdd:TIGR02168 605 KDLVkfdpklrkalsyllggvlvvddldnALELAKKLRPGyrivtldgdlvrpggvitggsAKTNSSILERRREIEELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 284 KHEELDRLAREKDAVLVAVKgahvEQLQELQTRVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSAW 363
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELR----KELEELEEELEQLRKELEELSRQISALR-KDLARLEAEVEQLEERIAQLSKELTEL 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 364 DAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERD--QVQLGLDWQRRCDDIERDQ 441
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaaNLRERLESLERRIAATERR 839
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 442 IQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEeiskdfpssEI 521
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES---------KR 910
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767997349 522 QRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAgGDAATPDYVLALEAEIRTLKHKFKTL 596
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA-LENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
16-361 |
5.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 16 RKEEEWRALQAHRTQLQEAALQDtrsQLEEAQGKLRCLQEdfvynlqvleerdlELERydaafAQAREWEEARRAEVSEL 95
Cdd:TIGR02168 210 EKAERYKELKAELRELELALLVL---RLEELREELEELQE--------------ELKE-----AEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 96 KIEAAKLRQalareaRKVEELQQQQQLAFQEHRLELervhSDKNGEIDHHREQYENLKWTLERKLEELDgELALQRQELL 175
Cdd:TIGR02168 268 KLEELRLEV------SELEEEIEELQKELYALANEI----SRLEQQKQILRERLANLERQLEELEAQLE-ELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 176 LEFEskmrkrehefrlqadnmsntalSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE-- 253
Cdd:TIGR02168 337 EELA----------------------ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLElq 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 254 -AMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKdavlvavkgaHVEQLQELQTRVLELQAHCETLEAQLR 332
Cdd:TIGR02168 395 iASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE----------LQAELEELEEELEELQEELERLEEALE 464
|
330 340
....*....|....*....|....*....
gi 767997349 333 RAEWRQADTAKEKDAAIDQLREDASTVKS 361
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
14-423 |
3.02e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 3.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 14 LLRKEEEWRALQAHRTQLqEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELE------RYDAAFAQAREWEEA 87
Cdd:COG4717 83 AEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAElaelpeRLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 88 RRaEVSELKIEAAKLRQALAREARKVEELQQQqqlAFQEHRLELERVHSDkngeidhhREQYENLKWTLERKLEELDGEL 167
Cdd:COG4717 162 EE-ELEELEAELAELQEELEELLEQLSLATEE---ELQDLAEELEELQQR--------LAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 168 AlqrqelllEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERK----LQ 243
Cdd:COG4717 230 E--------QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLARekasLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 244 SRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLElQAH 323
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA-EAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 324 CETLEAQLRRAEwrQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEmvsrdlqiqTLQEEEVKLKAQVARSQQDIE 403
Cdd:COG4717 381 VEDEEELRAALE--QAEEYQELKEELEELEEQLEELLGELEELLEALDEE---------ELEEELEELEEELEELEEELE 449
|
410 420
....*....|....*....|
gi 767997349 404 RYKQQLSLAVERERSLERDQ 423
Cdd:COG4717 450 ELREELAELEAELEQLEEDG 469
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
9-472 |
3.24e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 9 ALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 88
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE-------LEERERRRARLEALLAALGLPLPAS 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 89 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngEIDHHREQYENLKWTLERKLEELDGELA 168
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA----EIASLERRKSNIPARLLALRDALAEALG 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 169 LQRQEL-----LLEfeskMRKREHEFRLQADNMSNTA----LSRELKVKLLHKELEALKEAGA----KAAESLQRAEATN 235
Cdd:COG4913 455 LDEAELpfvgeLIE----VRPEEERWRGAIERVLGGFaltlLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPR 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 236 AE---LERKLQSRAGELQD-LEA-----MSRARVKDLED-KLHSVQLTR----KKEEETF-KRKHEELDRL------ARE 294
Cdd:COG4913 531 LDpdsLAGKLDFKPHPFRAwLEAelgrrFDYVCVDSPEElRRHPRAITRagqvKGNGTRHeKDDRRRIRSRyvlgfdNRA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 295 KDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAE------WRQADTAK------EKDAAIDQLREDASTVKSA 362
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDEIDVASaereiaELEAELERLDASSDDLAAL 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 363 wDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQvqlgLDWQRRCDDIERDQI 442
Cdd:COG4913 691 -EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL----LEERFAAALGDAVER 765
|
490 500 510
....*....|....*....|....*....|
gi 767997349 443 QKSEALIQGLSMAKSQVAAKLQETEQALQE 472
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
128-541 |
5.32e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 5.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 128 RLELERVHSDKNGEIDHHREQYENLKWT--------LERKLEELDGEL----------ALQRQELLLEFESKMRKREHEF 189
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEEKdlherlngLESELAELDEEIeryeeqreqaRETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 190 RLQAD------NMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELER------KLQSRAGELQDLEAMSR 257
Cdd:PRK02224 255 TLEAEiedlreTIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAvearreELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 258 ARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAEWR 337
Cdd:PRK02224 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR-EEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 338 QADTAKEKDAAIDQLREDASTVKSAWD--AQIAQLSKE------------------MVSRDLQIQTLQEEEVKLKAQVAR 397
Cdd:PRK02224 414 LEELREERDELREREAELEATLRTARErvEEAEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 398 SQQDIERYKQQLSLAVERERSLERDQvqlglDWQRRCDDiERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQE----- 472
Cdd:PRK02224 494 VEERLERAEDLVEAEDRIERLEERRE-----DLEELIAE-RRETIEEKRERAEELRERAAELEAEAEEKREAAAEaeeea 567
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767997349 473 QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEiskdfpssEIQRLREQntslRNAIAQMRKE 541
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAED--------EIERLREK----REALAELNDE 624
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
257-549 |
5.41e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 5.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 257 RARVKDLEDKLHSVQLTRKKEEETFKRKHEE-LDRLAREKDAVLVAVkgahVEQLQELQTRVLELQAHCETLEAQLRRAE 335
Cdd:pfam15921 237 KGRIFPVEDQLEALKSESQNKIELLLQQHQDrIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 336 WRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI-------QTLQEEEVKLKAQVARSQQDIERYKQQ 408
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELtearterDQFSQESGNLDDQLQKLLADLHKREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 409 LSLAVERERSL-ERDQ-VQLGLDWQRRCDDIERDQIQKSEALIQGL--------------------SMAK-SQVAAKLQE 465
Cdd:pfam15921 393 LSLEKEQNKRLwDRDTgNSITIDHLRRELDDRNMEVQRLEALLKAMksecqgqmerqmaaiqgkneSLEKvSSLTAQLES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 466 TEQALQE--QEVVLKAVTLERDQAVQALRMHGLPRpgAQMLLRQHEEEISK-----DFPSSEIQRLREQNTSLRNAiaqm 538
Cdd:pfam15921 473 TKEMLRKvvEELTAKKMTLESSERTVSDLTASLQE--KERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHLRNV---- 546
|
330
....*....|.
gi 767997349 539 RKEMEALSHQI 549
Cdd:pfam15921 547 QTECEALKLQM 557
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
18-563 |
6.43e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 6.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 18 EEEWRALQAHRTQLQEAalqdtRSQLEEAQGKLRCLQEdfvynlqvLEERDlelERYDAAFAQAREWEEARRAevseLKI 97
Cdd:COG4913 224 FEAADALVEHFDDLERA-----HEALEDAREQIELLEP--------IRELA---ERYAAARERLAELEYLRAA----LRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 98 EAAKLRQALAREARkveELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW----TLERKLEELDGELAlQRQE 173
Cdd:COG4913 284 WFAQRRLELLEAEL---EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdrleQLEREIERLERELE-ERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 174 LLLEFESKMRKREHEFRLQADNMsnTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 253
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEF--AALRAEAA-----ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 254 A--------MSRAR----------------------VKDLEDK--------LHSVQLTRKKEEETFKRKHEELDRLAREK 295
Cdd:COG4913 433 RrksniparLLALRdalaealgldeaelpfvgelieVRPEEERwrgaiervLGGFALTLLVPPEHYAAALRWVNRLHLRG 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 296 DAVLVAVKGAHVEQLQE---------------------LQTRVLELQAH--CETLEaQLRRAEW--------RQADTAKE 344
Cdd:COG4913 513 RLVYERVRTGLPDPERPrldpdslagkldfkphpfrawLEAELGRRFDYvcVDSPE-ELRRHPRaitragqvKGNGTRHE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 345 KDaaidqlreDASTVKSAWdaQIAQLSKEmvsrdlQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER--D 422
Cdd:COG4913 592 KD--------DRRRIRSRY--VLGFDNRA------KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 423 QVQLGLDW---QRRCDDIE--RDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQAL-----R 492
Cdd:COG4913 656 YSWDEIDVasaEREIAELEaeLERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdelqdR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 493 MHGLPRPG------------AQMLLRQHEEEISKDFpSSEIQRLREQntsLRNAIAQMRKEMEALSHQIPPPIQTAAEST 560
Cdd:COG4913 736 LEAAEDLArlelralleerfAAALGDAVERELRENL-EERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADL 811
|
...
gi 767997349 561 DAN 563
Cdd:COG4913 812 ESL 814
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
18-329 |
1.09e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 18 EEEWRALQAHRTQLQEAaLQDTRSQLEEAQGKLRCLQEDFVYNLQVLEE-------RDLELERYDAAFAQAREWEEARRA 90
Cdd:PRK02224 404 PVDLGNAEDFLEELREE-RDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 91 EVSELKIEAAKLRQALAREARKVEelqqqqqlafQEHRLE-LERVHSDKNGEIDHHREqyenlkwTLERKLEELDgELAL 169
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDLVE----------AEDRIErLEERREDLEELIAERRE-------TIEEKRERAE-ELRE 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 170 QRQELLLEFESKmRKREHEFRLQADNMSNTALSRELKVKLLHKELEALkeagAKAAESLQRAEATNAELERkLQSRAGEL 249
Cdd:PRK02224 545 RAAELEAEAEEK-REAAAEAEEEAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIADAEDEIER-LREKREAL 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 250 QDLEAMSRARVKDL------------EDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAH--VEQLQELQT 315
Cdd:PRK02224 619 AELNDERRERLAEKrerkreleaefdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEneLEELEELRE 698
|
330
....*....|....
gi 767997349 316 RVLELQAHCETLEA 329
Cdd:PRK02224 699 RREALENRVEALEA 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
55-604 |
1.18e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 55 EDFVYNlQVLEERDLElERYDAAFAQAREWEEARRAEVSELK--------IEAAKLRQALAREARKVEELQQQQQLAFQE 126
Cdd:COG4913 210 DDFVRE-YMLEEPDTF-EAADALVEHFDDLERAHEALEDAREqiellepiRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 127 HRLELERvhsdknGEIDHHREQYEnlkwTLERKLEELDGELALQRQELLlefeskmrkrehEFRLQADNMSNTALSR-EL 205
Cdd:COG4913 288 RRLELLE------AELEELRAELA----RLEAELERLEARLDALREELD------------ELEAQIRGNGGDRLEQlER 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 206 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKH 285
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 286 EELDRLAREKDAVlvavkGAHVEQL-----QELQTRVLELQAHCETLEAQLRRAEWRQA--------------DTAKEKD 346
Cdd:COG4913 426 AEIASLERRKSNI-----PARLLALrdalaEALGLDEAELPFVGELIEVRPEEERWRGAiervlggfaltllvPPEHYAA 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 347 AA--IDQLR-------EDASTVKSawDAQIAQLSKEMVSRDLQIQT--LQEEevkLKAQVAR--------SQQDIERYKQ 407
Cdd:COG4913 501 ALrwVNRLHlrgrlvyERVRTGLP--DPERPRLDPDSLAGKLDFKPhpFRAW---LEAELGRrfdyvcvdSPEELRRHPR 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 408 QLSLAVERERSLERdqvqlgldwqRRCDD---IERDQI--QKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTl 482
Cdd:COG4913 576 AITRAGQVKGNGTR----------HEKDDrrrIRSRYVlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ- 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 483 ERDQAVQALRMHG---LPRPGAQMLLRQHEEEISK-DFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI--------- 549
Cdd:COG4913 645 ERREALQRLAEYSwdeIDVASAEREIAELEAELERlDASSDDLAALEEQLEELEAELEELEEELDELKGEIgrlekeleq 724
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767997349 550 --------------PPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVL 604
Cdd:COG4913 725 aeeeldelqdrleaAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
32-394 |
1.54e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.42 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 32 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVleeRDLELERYDAAFAQAREWEEARRAEVSELK--IEAAKLRQA-LAR 108
Cdd:pfam05483 416 EDEKLLDEKKQFEKIAEELKGKEQELIFLLQA---REKEIHDLEIQLTAIKTSEEHYLKEVEDLKteLEKEKLKNIeLTA 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 109 EARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKwTLERKLEELDGELALQRQELLL---EFESKMRKR 185
Cdd:pfam05483 493 HCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQkgdEVKCKLDKS 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 186 EHEFRlqadNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsraRVKDLED 265
Cdd:pfam05483 572 EENAR----SIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEI----KVNKLEL 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 266 KLHSvqlTRKKEEETFK--RKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRV-LELQAHCETLEAQLRRAEWRQADTA 342
Cdd:pfam05483 644 ELAS---AKQKFEEIIDnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIdKRCQHKIAEMVALMEKHKHQYDKII 720
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 767997349 343 KEKDAAIDQLR---EDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQ 394
Cdd:pfam05483 721 EERDSELGLYKnkeQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKME 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
9-345 |
1.54e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 9 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 88
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELS-QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 89 RAEVSELKIEAAKLRQAL----AREARKVEELQQQQQLAFQEHRLELERVHSDKNGEID--HHREQY-ENLKWTLERKLE 161
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALndleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNrlTLEKEYlEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 162 ELDGELAL--QRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 239
Cdd:TIGR02169 844 DLKEQIKSieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 240 RKLQSRAGELQDLEAMSRARVKDLEDK--LHSVQLTRKKEEETFkRKHEELDRLArekdavlvavkgahVEQLQELQTRV 317
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEI-RALEPVNMLA--------------IQEYEEVLKRL 988
|
330 340
....*....|....*....|....*...
gi 767997349 318 LELQAHCETLEAQLRRAEWRQADTAKEK 345
Cdd:TIGR02169 989 DELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
34-604 |
1.66e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.53 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 34 AALQDTRSQLEEAQGKLRCLQEDFVyNLQVLEERdlELERYDAAFAQAREWEEARRAEVSElKIEAAKLRQALAREArkv 113
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYK-SDETLIAS--RQEERQETSAELNQLLRTLDDQWKE-KRDELNGELSAADAA--- 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 114 eelqqqqqlaFQEHRLELERVHSDKNGEIDHHREQY----ENLKwTLERKLEELDGELALQ---RQELLLEFESKMRKRE 186
Cdd:pfam12128 317 ----------VAKDRSELEALEDQHGAFLDADIETAaadqEQLP-SWQSELENLEERLKALtgkHQDVTAKYNRRRSKIK 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 187 HEF-RLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLED 265
Cdd:pfam12128 386 EQNnRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 266 KLHSVQLTRKKEEETFKRKHEELdRLAREKdAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLrraewrqadtakek 345
Cdd:pfam12128 466 LENFDERIERAREEQEAANAEVE-RLQSEL-RQARKRRDQASEALRQASRRLEERQSALDELELQL-------------- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 346 DAAIDQLREDASTVKSAWDAQIAQL-SKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQV 424
Cdd:pfam12128 530 FPQAGTLLHFLRKEAPDWEQSIGKViSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKA 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 425 QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQAL--------QEQEVVLKAVTLERDQAVQALRMhgl 496
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLrrlfdekqSEKDKKNKALAERKDSANERLNS--- 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 497 PRPGAQMLLRQHE---EEISKDFPSSEIQRL---REQNTSLRNAIAQMRKEMEALSHQipppiqtAAESTDA--NQPDPE 568
Cdd:pfam12128 687 LEAQLKQLDKKHQawlEEQKEQKREARTEKQaywQVVEGALDAQLALLKAAIAARRSG-------AKAELKAleTWYKRD 759
|
570 580 590
....*....|....*....|....*....|....*.
gi 767997349 569 AGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVL 604
Cdd:pfam12128 760 LASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVL 795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
87-549 |
2.07e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 87 ARRAEVSELKIEAAKLRQALAREARKVEELQQqqqlafqEHRLELERVHSDKNgEIDHHREQYENLkwtlERKLEELDGE 166
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELP-------ELREELEKLEKEVK-ELEELKEEIEEL----EKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 167 LAlQRQELLLEFESKMRKREHEFRLQADNMsntalsRELK-VKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSR 245
Cdd:PRK03918 254 KR-KLEEKIRELEERIEELKKEIEELEEKV------KELKeLKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 246 AGELQDLEAMSRaRVKDLEDKLhsVQLTRKKEE-ETFKRKHEELDRLAREKDAVLVAVKGAHVEQ----LQELQTRVLEL 320
Cdd:PRK03918 327 EERIKELEEKEE-RLEELKKKL--KELEKRLEElEERHELYEEAKAKKEELERLKKRLTGLTPEKlekeLEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 321 QAHCETLEAQLRRAEWRqadtAKEKDAAIDQLR---------------EDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQ 385
Cdd:PRK03918 404 EEEISKITARIGELKKE----IKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 386 EEEVKLKAQVARSQQDIERYK-----------------QQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQ--IQKSE 446
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKElaeqlkeleeklkkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEelKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 447 ALIQGLSMAKSQVA------------------AKLQETEQ----------ALQEQEVVLKAVTLERDQAVQALRMHGLPR 498
Cdd:PRK03918 560 ELEKKLDELEEELAellkeleelgfesveeleERLKELEPfyneylelkdAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 767997349 499 PGAQMLlRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 549
Cdd:PRK03918 640 KRLEEL-RKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
32-630 |
3.00e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 32 QEAALQDTRSQL---EEAQGKlRCLQEDFVYNL----------QVLEERDLELERYDAAFAQAREWEEARRAE------- 91
Cdd:pfam15921 182 HEGVLQEIRSILvdfEEASGK-KIYEHDSMSTMhfrslgsaisKILRELDTEISYLKGRIFPVEDQLEALKSEsqnkiel 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 92 ------------VSELKIEAAKLRQAlAREARKVEELQQQQQLAFQEHRLELERVH----SDKNGEIDHHREQYENLKWT 155
Cdd:pfam15921 261 llqqhqdrieqlISEHEVEITGLTEK-ASSARSQANSIQSQLEIIQEQARNQNSMYmrqlSDLESTVSQLRSELREAKRM 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 156 LERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 235
Cdd:pfam15921 340 YEDKIEELEKQLVLANSEL-----TEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 236 AELERKLQSRAGELQDLEAMSRARVKDLEDKLhsvqltrKKEEETFKRKHEELDRlarekdavlVAVKGAHVEQLQELQT 315
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLKAMKSECQGQM-------ERQMAAIQGKNESLEK---------VSSLTAQLESTKEMLR 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 316 RVLE-LQAHCETLEAQLRRAEWRQAdTAKEKDAAIDQLREDASTVKSAWDAQIAQLsKEMVSRDLQIQTLQEEEVKLKAQ 394
Cdd:pfam15921 479 KVVEeLTAKKMTLESSERTVSDLTA-SLQEKERAIEATNAEITKLRSRVDLKLQEL-QHLKNEGDHLRNVQTECEALKLQ 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 395 VARSQQDIERYKQQL----SLAVERERSLERDQVQLGldwqrrcdDIERdQIQKSEALIQGLSMAKSQVAAKLQETEQAL 470
Cdd:pfam15921 557 MAEKDKVIEILRQQIenmtQLVGQHGRTAGAMQVEKA--------QLEK-EINDRRLELQEFKILKDKKDAKIRELEARV 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 471 QEQEvvlkavtLERDQAVQAlrmhglprpGAQMLlrqheeeiskdfpsSEIQRLREQNTSLRNAIAQMRKEMEALSHqip 550
Cdd:pfam15921 628 SDLE-------LEKVKLVNA---------GSERL--------------RAVKDIKQERDQLLNEVKTSRNELNSLSE--- 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 551 ppiqtaaestdanqpdpeaggdaatpdyvlaleaEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQ-PSVRTSTETTGG 629
Cdd:pfam15921 675 ----------------------------------DYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSElEQTRNTLKSMEG 720
|
.
gi 767997349 630 S 630
Cdd:pfam15921 721 S 721
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
141-559 |
5.52e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 141 EIDHHREQYENLKwTLERKLEELDGELALQRQELLlEFESKMRKREHEFRLQADNMSNTALSRELKvkLLHKELEALKEA 220
Cdd:COG4717 79 ELKEAEEKEEEYA-ELQEELEELEEELEELEAELE-ELREELEKLEKLLQLLPLYQELEALEAELA--ELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 221 GAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLV 300
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 301 -AVKGAHVEQLQELQT-----------------------RVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDA 356
Cdd:COG4717 235 eLEAAALEERLKEARLllliaaallallglggsllslilTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 357 STVKSAWDAQIAQLS----------KEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER--DQV 424
Cdd:COG4717 315 ELEEEELEELLAALGlppdlspeelLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAalEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 425 QLGLDWQRRCDDIERDQIQKSEALIQGLSMA-KSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQM 503
Cdd:COG4717 395 EEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAEL 474
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 767997349 504 LLRQHEEEiskdfpsSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAES 559
Cdd:COG4717 475 LQELEELK-------AELRELAEEWAALKLALELLEEAREEYREERLPPVLERASE 523
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
17-549 |
5.94e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 5.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 17 KEEEWRALQAHRTQLQE------AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRA 90
Cdd:TIGR02169 313 KERELEDAEERLAKLEAeidkllAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 91 EVSELKIEaaklRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELdgelalq 170
Cdd:TIGR02169 393 KLEKLKRE----INELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEWKLEQL------- 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 171 rQELLLEFESKMRKREHEFRlqadnmsntALSRELKVklLHKELEALkEAGAKAAESLQRAEATNAE-LERKLQSRAGEL 249
Cdd:TIGR02169 461 -AADLSKYEQELYDLKEEYD---------RVEKELSK--LQRELAEA-EAQARASEERVRGGRAVEEvLKASIQGVHGTV 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 250 QDL-----------EAMSRAR-----VKDLEDKLHSVQL--TRKKEEETF------KRKHEELDRLArEKDAVLVAVKGA 305
Cdd:TIGR02169 528 AQLgsvgeryataiEVAAGNRlnnvvVEDDAVAKEAIELlkRRKAGRATFlplnkmRDERRDLSILS-EDGVIGFAVDLV 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 306 HVEQ---------------LQELQT-RVLELQAHCETLEAQLRraewrqadtakEKDAAI---DQLREDASTVKSAWDAQ 366
Cdd:TIGR02169 607 EFDPkyepafkyvfgdtlvVEDIEAaRRLMGKYRMVTLEGELF-----------EKSGAMtggSRAPRGGILFSRSEPAE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 367 IAQLSKEmvsrdlqIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRrcddiERDQIQKSE 446
Cdd:TIGR02169 676 LQRLRER-------LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK-----LKERLEELE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 447 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMllRQHEEEIS------------- 513
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL--SKLEEEVSriearlreieqkl 821
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 767997349 514 ------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 549
Cdd:TIGR02169 822 nrltleKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
34-601 |
6.08e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 6.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 34 AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDleleRYDAAFAQAREWEEARRAEVSELkiEAAKLRQALAREARKV 113
Cdd:TIGR00618 222 QVLEKELKHLREALQQTQQSHAYLTQKREAQEEQL----KKQQLLKQLRARIEELRAQEAVL--EETQERINRARKAAPL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 114 EELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELDGELALQRQELLL------------EFESK 181
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMR-SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIrdahevatsireISCQQ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 182 MRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM------ 255
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITctaqce 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 256 ---------SRARVKDLEDKLHSVQLTRKKEEET------FKRKHEELDRLAREK------DAVLVAVKGAHVEQLQELQ 314
Cdd:TIGR00618 455 klekihlqeSAQSLKEREQQLQTKEQIHLQETRKkavvlaRLLELQEEPCPLCGScihpnpARQDIDNPGPLTRRMQRGE 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 315 TRVLELQAHCETLEAQLrRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKL--- 391
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQL-TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLace 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 392 ------KAQVARSQQDIERYKQQLSLAVERER-SLERDQVQLGLDWQR----RCDDIERDQIQKSEALIQGLSMAKSQVA 460
Cdd:TIGR00618 614 qhallrKLQPEQDLQDVRLHLQQCSQELALKLtALHALQLTLTQERVRehalSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 461 AKLQETEQ---ALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSS-EIQRLREQNTSLRNAIA 536
Cdd:TIGR00618 694 YWKEMLAQcqtLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVlKARTEAHFNNNEEVTAA 773
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767997349 537 QMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLE 601
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
70-602 |
6.48e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.49 E-value: 6.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 70 ELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERV--HSDKNGEIDHHRE 147
Cdd:pfam05483 100 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCarSAEKTKKYEYERE 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 148 QYENLKWTLERKLEELdgelalqrqelLLEFEskmrkrehEFRLQADNmsnTALSRELKVKLLHKELEALKEAGAKaaeS 227
Cdd:pfam05483 180 ETRQVYMDLNNNIEKM-----------ILAFE--------ELRVQAEN---ARLEMHFKLKEDHEKIQHLEEEYKK---E 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 228 LQRAEATNAELERKLQSRAGELQDLEAM---SRARVKDLEDKlhsvqltRKKEEETFKRKHEELDRLAREKDAVLVAVK- 303
Cdd:pfam05483 235 INDKEKQVSLLLIQITEKENKMKDLTFLleeSRDKANQLEEK-------TKLQDENLKELIEKKDHLTKELEDIKMSLQr 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 304 -----GAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLskEMVSRD 378
Cdd:pfam05483 308 smstqKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL--KIITME 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 379 LQIQTLQEEEV------------KLKAQVARSQQDIERYKQQLSLAVErersLERDQVQLGLDWQRRCDDIERDQIQkse 446
Cdd:pfam05483 386 LQKKSSELEEMtkfknnkeveleELKKILAEDEKLLDEKKQFEKIAEE----LKGKEQELIFLLQAREKEIHDLEIQ--- 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 447 alIQGLSMAKSQVAAKLQETEQALQEQEvvLKAVTLERDQAVQALRMHGLPRPGAQMLL--RQHEEEISKDFPSSE---- 520
Cdd:pfam05483 459 --LTAIKTSEEHYLKEVEDLKTELEKEK--LKNIELTAHCDKLLLENKELTQEASDMTLelKKHQEDIINCKKQEErmlk 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 521 -IQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDpeaggdaatpdyVLALEAEIRTLKHKFKTLEKH 599
Cdd:pfam05483 535 qIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYE------------VLKKEKQMKILENKCNNLKKQ 602
|
...
gi 767997349 600 LED 602
Cdd:pfam05483 603 IEN 605
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
156-381 |
8.54e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 8.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 156 LERKLEELDGELALQRQELLlEFESKMRkrehEFRLQadnmsNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 235
Cdd:COG3206 173 ARKALEFLEEQLPELRKELE-EAEAALE----EFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 236 AELERKLQSRAGELQDLeaMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQT 315
Cdd:COG3206 243 AALRAQLGSGPDALPEL--LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767997349 316 RVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSAWDA-----QIAQLSKEMVSRDLQI 381
Cdd:COG3206 321 ELEALQAREASLQAQLAQLE-ARLAELPELEAELRRLEREVEVARELYESllqrlEEARLAEALTVGNVRV 390
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
210-377 |
1.47e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 210 LHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLeamsRARVKDLEDKLHSVQLTR-----KKEEETFKRK 284
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEV----EARIKKYEEQLGNVRNNKeyealQKEIESLKRR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 285 HEELDRLAREKDavlvavkgahvEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtaKEKDAAIDQLREDASTVKSAWD 364
Cdd:COG1579 105 ISDLEDEILELM-----------ERIEELEEELAELEAELAELEAELEEKK-------AELDEELAELEAELEELEAERE 166
|
170
....*....|...
gi 767997349 365 AQIAQLSKEMVSR 377
Cdd:COG1579 167 ELAAKIPPELLAL 179
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
18-425 |
2.31e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 18 EEEWRALQAHRTQLQEAAlqDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKI 97
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 98 EA-AKLR--QALAREARKVEELQQQQQLafqehrLELERVHSDKNGEIdhHREQYENLKWTLERKLEELDgelALQRQEL 174
Cdd:pfam15921 525 RVdLKLQelQHLKNEGDHLRNVQTECEA------LKLQMAEKDKVIEI--LRQQIENMTQLVGQHGRTAG---AMQVEKA 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 175 LLEFESKMRKRE-HEFRLQADNmsNTALSRELKVKLLHKELEALK--EAGAKAAESLQRAEATNAELERKLQSRAGELQD 251
Cdd:pfam15921 594 QLEKEINDRRLElQEFKILKDK--KDAKIRELEARVSDLELEKVKlvNAGSERLRAVKDIKQERDQLLNEVKTSRNELNS 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 252 LEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRlAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQL 331
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ-TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKI 750
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 332 RRAEWRQADTAKEKDAaidqLREDastvKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQ------------ 399
Cdd:pfam15921 751 QFLEEAMTNANKEKHF----LKEE----KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEvaldkaslqfae 822
|
410 420
....*....|....*....|....*..
gi 767997349 400 -QDIERYKQQLSLAVERERSLERDQVQ 425
Cdd:pfam15921 823 cQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
197-430 |
2.41e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 197 SNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsraRVKDLEDKLHSVQLTRKK 276
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----ELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 277 EEETFKRKHEELDRLAR------EKDAVLVAVKGAHVEQ----LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKd 346
Cdd:COG4942 95 LRAELEAQKEELAELLRalyrlgRQPPLALLLSPEDFLDavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAER- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 347 AAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 426
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
....
gi 767997349 427 GLDW 430
Cdd:COG4942 254 KLPW 257
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
19-425 |
2.55e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 19 EEWRALQAHRTQLQEAaLQDTRSQLEEAQGKLRCLQEdfvynlqVLEERDLELERYDAAFAQAREweearraEVSELKIE 98
Cdd:COG3096 333 SDHLNLVQTALRQQEK-IERYQEDLEELTERLEEQEE-------VVEEAAEQLAEAEARLEAAEE-------EVDSLKSQ 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 99 AAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSdKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLef 178
Cdd:COG3096 398 LADYQQALDVQQTR--------AIQYQQAVQALEKARA-LCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSV-- 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 179 eSKMRKREHEFRLQAdnmsntalsrelkVKLLHKELEAlKEAGAKAAESLQRAeatnaeleRKLQSRAGELQDLeamsRA 258
Cdd:COG3096 467 -ADAARRQFEKAYEL-------------VCKIAGEVER-SQAWQTARELLRRY--------RSQQALAQRLQQL----RA 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 259 RVKDLEDKLHSVQLTRKKEEETFKRKHEELDrlarekdavlvavkgaHVEQLQELQtrvLELQAHCETLEAQLRRAEWRQ 338
Cdd:COG3096 520 QLAELEQRLRQQQNAERLLEEFCQRIGQQLD----------------AAEELEELL---AELEAQLEELEEQAAEAVEQR 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 339 ADTAKEKdaaiDQLRedastvksawdAQIAQLSKemvsRDLQIQTLQEEEVKLKAQVAR---SQQDIERYKQQLsLAVER 415
Cdd:COG3096 581 SELRQQL----EQLR-----------ARIKELAA----RAPAWLAAQDALERLREQSGEalaDSQEVTAAMQQL-LERER 640
|
410
....*....|
gi 767997349 416 ERSLERDQVQ 425
Cdd:COG3096 641 EATVERDELA 650
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
193-550 |
3.02e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 193 ADNMSNTALSRELKVKLLHKElEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSrarvkdleDKLHSVQl 272
Cdd:COG3096 271 ADYMRHANERRELSERALELR-RELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAS--------DHLNLVQ- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 273 TRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQL-----------RRA-EWRQAD 340
Cdd:COG3096 341 TALRQQEKIERYQEDLEELTERLEEQEEVVEEAA-EQLAEAEARLEAAEEEVDSLKSQLadyqqaldvqqTRAiQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 341 TAKEKdaAIDQLREDASTVKSAWDAQIAQLSKEmvsrDLQIQTLQEEEVKLK-AQVARSQQDiERYK--QQLSLAVERER 417
Cdd:COG3096 420 QALEK--ARALCGLPDLTPENAEDYLAAFRAKE----QQATEEVLELEQKLSvADAARRQFE-KAYElvCKIAGEVERSQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 418 SLERDQvQLGLDWqrrcddieRDQiqksEALIQGLSmaksQVAAKLQETEQALQEQEVVlkavtleRDQAVQALRMHGLP 497
Cdd:COG3096 493 AWQTAR-ELLRRY--------RSQ----QALAQRLQ----QLRAQLAELEQRLRQQQNA-------ERLLEEFCQRIGQQ 548
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 767997349 498 RPGAQMLLRQHEE-EISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIP 550
Cdd:COG3096 549 LDAAEELEELLAElEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAP 602
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
206-405 |
5.23e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 5.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 206 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQD-LEAMsrarVKDLED------KLHSVQLTRKKEE 278
Cdd:PHA02562 196 QIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDeLLNL----VMDIEDpsaalnKLNTAAAKIKSKI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 279 ETFKRKHEELdrlarEKDAVLVAVKGA---HVEQLQELQTRVLELQAHCETL-----EAQLRRAEWRQAD-TAKEKDAAI 349
Cdd:PHA02562 272 EQFQKVIKMY-----EKGGVCPTCTQQiseGPDRITKIKDKLKELQHSLEKLdtaidELEEIMDEFNEQSkKLLELKNKI 346
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 767997349 350 DQLREDAST-VKSAWDAQ--IAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERY 405
Cdd:PHA02562 347 STNKQSLITlVDKAKKVKaaIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
329-551 |
8.60e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 8.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 329 AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQ 408
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 409 L--------SLAVERERSLERDQVQLGLDwQRRCDDIERDQI------QKSEALIQGLSMAKSQVAAKLQETEQALQEQE 474
Cdd:COG4942 99 LeaqkeelaELLRALYRLGRQPPLALLLS-PEDFLDAVRRLQylkylaPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767997349 475 VVLKAVTLERDQAVQALRMHglprpgaQMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPP 551
Cdd:COG4942 178 ALLAELEEERAALEALKAER-------QKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
10-492 |
1.47e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 10 LNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVY-----NLQVLEERDLELERYDAAFAQAREW 84
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLlakeeEELKSELLKLERRKVDDEEKLKESE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 85 EEARRAEVSELKIEAAKLRQ----ALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW------ 154
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELekelKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEeelelk 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 155 -------TLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLH---KELEALKEAGAKA 224
Cdd:pfam02463 401 seeekeaQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDElelKKSEDLLKETQLV 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 225 AESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKrkhEELDRLAREKDAVLVAVKG 304
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV---ENYKVAISTAVIVEVSATA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 305 AHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMvsrDLQIQTL 384
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG---ILKDTEL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 385 QEEEVKLKAQVARSQQDIERykqQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQ 464
Cdd:pfam02463 635 TKLKESAKAKESGLRKGVSL---EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
490 500
....*....|....*....|....*...
gi 767997349 465 ETEQALQEQEVVLKAVTLERDQAVQALR 492
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELK 739
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
9-512 |
2.09e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 9 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 88
Cdd:pfam01576 500 SLQEQLEEEEEAKRNVERQLSTLQ-AQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRL 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 89 RAEVSELKIEAAKLRQ---ALAREARKVEELQQQQQLAFQEHRLELERVHSDKngeidhhREQyENLKWTLERKLEELDG 165
Cdd:pfam01576 579 QQELDDLLVDLDHQRQlvsNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEA-------REK-ETRALSLARALEEALE 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 166 ---ELALQRQELLLEFESKMR------KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQraeATNA 236
Cdd:pfam01576 651 akeELERTNKQLRAEMEDLVSskddvgKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQ---ALKA 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 237 ELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAhVEQLQELQTR 316
Cdd:pfam01576 728 QFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEA-VKQLKKLQAQ 806
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 317 VLELQAHCEtlEAQLRRAEWRQADTAKEK-----DAAIDQLREDASTVKSA---WDAQIAQLSKEMVSRDLQIQTLQEEE 388
Cdd:pfam01576 807 MKDLQRELE--EARASRDEILAQSKESEKklknlEAELLQLQEDLAASERArrqAQQERDELADEIASGASGKSALQDEK 884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 389 VKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRrcddiERDQIQKSEALIQGLSMAKSQVAAKLQETEQ 468
Cdd:pfam01576 885 RRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAA-----ERSTSQKSESARQQLERQNKELKAKLQEMEG 959
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 767997349 469 ALQ-EQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEI 512
Cdd:pfam01576 960 TVKsKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKL 1004
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
12-299 |
2.71e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 12 ELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAaFAQAREWEEARRAE 91
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK-EEKLKAQEEELRAL 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 92 VSELKIEAAKLRQalaREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR 171
Cdd:pfam02463 807 EEELKEEAELLEE---EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 172 QEL---LLEFESKMRKREHEFRLQADNMSNTALSR------ELKVKLLHKELEALKEAGAKAAEslQRAEATNAELERKL 242
Cdd:pfam02463 884 LKDeleSKEEKEKEEKKELEEESQKLNLLEEKENEieerikEEAEILLKYEEEPEELLLEEADE--KEKEENNKEEEEER 961
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 767997349 243 QSRagELQDLEAMSRARVKDLEDKlhsvqltrKKEEETFKRKHEELDRLAREKDAVL 299
Cdd:pfam02463 962 NKR--LLLAKEELGKVNLMAIEEF--------EEKEERYNKDELEKERLEEEKKKLI 1008
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
43-371 |
5.12e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 43 LEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQArEWEEARRAEVSELKIEAAKLRQalarEARKVEELQQQQQL 122
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ-LKEKLELEEEYLLYLDYLKLNE----ERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 123 AFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEfesKMRKREHEFRLQADNMSNTALS 202
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL---ERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 203 RELK-----VKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEdKLHSVQLTRKKE 277
Cdd:pfam02463 328 KELKkekeeIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE-EELELKSEEEKE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 278 EETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEaqLRRAEWRQADTAKEKDAAIDQLREDAS 357
Cdd:pfam02463 407 AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE--LKLLKDELELKKSEDLLKETQLVKLQE 484
|
330
....*....|....
gi 767997349 358 TVKSAWDAQIAQLS 371
Cdd:pfam02463 485 QLELLLSRQKLEER 498
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
238-426 |
5.37e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 238 LERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDrLAREKDAVLVAVKGAhVEQLQELQTRV 317
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE----AALEEFRQKNGLVD-LSEEAKLLLQQLSEL-ESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 318 LELQAHCETLEAQLRRAEWRQADTAKekDAAIDQLREDASTVKsawdAQIAQLSK-------EMVSRDLQIQTLQEE--- 387
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELE----AELAELSArytpnhpDVIALRAQIAALRAQlqq 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 767997349 388 -----EVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 426
Cdd:COG3206 310 eaqriLASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
41-497 |
6.20e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 6.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 41 SQLEEAQGKLRCLQEDFVYNLQVLEERD------LELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVE 114
Cdd:PRK01156 322 NKYHAIIKKLSVLQKDYNDYIKKKSRYDdlnnqiLELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 115 ELQQQQQLAFQEHRLELERVHSDK---NGEIDHHREQYENLkwtlERKLEELDGELALQRQELLLEFESKMRKREHefrl 191
Cdd:PRK01156 402 IDPDAIKKELNEINVKLQDISSKVsslNQRIRALRENLDEL----SRNMEMLNGQSVCPVCGTTLGEEKSNHIINH---- 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 192 qadnMSNTALSRELKVKLLHKELEALKEagaKAAESLQRAEATNAELERKLQSRAGELQDLeamsRARVKDLEDKLhsvq 271
Cdd:PRK01156 474 ----YNEKKSRLEEKIREIEIEVKDIDE---KIVDLKKRKEYLESEEINKSINEYNKIESA----RADLEDIKIKI---- 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 272 lTRKKEEETfkrKHEELDRlarekdavlvAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAewRQADTAKEKDAAIDQ 351
Cdd:PRK01156 539 -NELKDKHD---KYEEIKN----------RYKSLKLEDLDSKRTSWLNALAVISLIDIETNRS--RSNEIKKQLNDLESR 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 352 LREDAST---VKSAWDAQIAQLSKEMVSRDLQIQTLQEeevkLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLG- 427
Cdd:PRK01156 603 LQEIEIGfpdDKSYIDKSIREIENEANNLNNKYNEIQE----NKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINd 678
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767997349 428 ----LDWQR-RCDDIERDQIQKsEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTlERDQAVQALRMHGLP 497
Cdd:PRK01156 679 iednLKKSRkALDDAKANRARL-ESTIEILRTRINELSDRINDINETLESMKKIKKAIG-DLKRLREAFDKSGVP 751
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
188-609 |
8.44e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 188 EFRLQADNMSNtalsRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKL 267
Cdd:TIGR04523 111 EIKNDKEQKNK----LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 268 HSVQLTRKKE--EETFKRKHEELDRLAREKDAVLVAVKgahvEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEK 345
Cdd:TIGR04523 187 KNIDKIKNKLlkLELLLSNLKKKIQKNKSLESQISELK----KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 346 DAAIDQLREDASTVKSAwDAQIAQLSKEMVSRDLQIQTL-------------------QEEEVKLKAQVARSQQDIERYK 406
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQN-NKKIKELEKQLNQLKSEISDLnnqkeqdwnkelkselknqEKKLEEIQNQISQNNKIISQLN 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 407 QQLSlavererSLERDQVQLGLDWQRRCDDIER--DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKavtlER 484
Cdd:TIGR04523 342 EQIS-------QLKKELTNSESENSEKQRELEEkqNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ----QK 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 485 DQAVQALRmhglprpgaqmllrQHEEEISKdfpssEIQRLREQNTSLRNAIAQMRKEMEALSHQIpppiqtaaESTDANQ 564
Cdd:TIGR04523 411 DEQIKKLQ--------------QEKELLEK-----EIERLKETIIKNNSEIKDLTNQDSVKELII--------KNLDNTR 463
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 767997349 565 PDPEaggdaatpDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKM 609
Cdd:TIGR04523 464 ESLE--------TQLKVLSRSINKIKQNLEQKQKELKSKEKELKK 500
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
80-345 |
8.89e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 80 QAREWEEARRAEVSELKIEAAKLRQAlarearkveelqqqqqLAFQEHrlelERVHSDKNGEIDhhREQYENLKWTLERk 159
Cdd:pfam17380 308 KAREVERRRKLEEAEKARQAEMDRQA----------------AIYAEQ----ERMAMERERELE--RIRQEERKRELER- 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 160 leeldgelaLQRQELLLEFeSKMRKREhefRLQAD-NMSNTALSREL----KVKLLHKELEALKEAGAKAAESL--QRAE 232
Cdd:pfam17380 365 ---------IRQEEIAMEI-SRMRELE---RLQMErQQKNERVRQELeaarKVKILEEERQRKIQQQKVEMEQIraEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 233 ATNAELERKLQSRAGElqdleaMSRARVKDLEdKLHSVQLTRKKEEETfKRKHEELDRLAREKDAVLVAVKGAHVEQLQE 312
Cdd:pfam17380 432 ARQREVRRLEEERARE------MERVRLEEQE-RQQQVERLRQQEEER-KRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
250 260 270
....*....|....*....|....*....|...
gi 767997349 313 LQTRVLELQAHCETLEAQLrraEWRQADTAKEK 345
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEM---EERQKAIYEEE 533
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
15-270 |
1.05e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 15 LRKEEEWRALQAHRTQLQEAALQD--TRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEV 92
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 93 SELKIEAAKLRQALAR-EARKVEELQQQQQLAFQEhrLELERVHSDKNGEIDHHREQYEN-------LKWTLERKlEELD 164
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENlNGKKEELEEELEELEAAL--RDLESRLGDLKKERDELEAQLRElerkieeLEAQIEKK-RKRL 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 165 GELALQRQELLLEFESKMRKREHEFRLQADNMSNTALsrELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQS 244
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV--QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK 997
|
250 260
....*....|....*....|....*.
gi 767997349 245 RAGELQDLeamsRARVKDLEDKLHSV 270
Cdd:TIGR02169 998 LEEERKAI----LERIEEYEKKKREV 1019
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
344-492 |
1.11e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 344 EKDAAIDQLREDASTVK---SAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlAVERERSLE 420
Cdd:COG1579 14 ELDSELDRLEHRLKELPaelAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG-NVRNNKEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767997349 421 RDQVQLgldwqrrcdDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALR 492
Cdd:COG1579 93 ALQKEI---------ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
130-420 |
1.15e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 130 ELERVHSDKNGEIDHHREQYENLKWTLERKLEELDgELALQRQELllefESKMRKREHEfrlqadnmsNTALSRELKVK- 208
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK-NLESQINDL----ESKIQNQEKL---------NQQKDEQIKKLq 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 209 ----LLHKELEALKEAGAKAAESLQRAEATNAELERKLQsragELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRK 284
Cdd:TIGR04523 419 qekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK----NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSK 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 285 HEELDRLAREKDAVlvavkgahVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQL-REDASTVKSAW 363
Cdd:TIGR04523 495 EKELKKLNEEKKEL--------EEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkKENLEKEIDEK 566
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767997349 364 DAQIAQLSKEMVS-------RDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLE 420
Cdd:TIGR04523 567 NKEIEELKQTQKSlkkkqeeKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
338-588 |
1.20e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 338 QADT-AKEKDAAIDQLREDASTVKS---AWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlav 413
Cdd:COG3883 13 FADPqIQAKQKELSELQAELEAAQAeldALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 414 ERERSLERDQVQLGL-----------DWQRRCDDIER------DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 476
Cdd:COG3883 90 ERARALYRSGGSVSYldvllgsesfsDFLDRLSALSKiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 477 LKAvtLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALshQIPPPIQTA 556
Cdd:COG3883 170 KAE--LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAS 245
|
250 260 270
....*....|....*....|....*....|..
gi 767997349 557 AESTDANQPDPEAGGDAATPDYVLALEAEIRT 588
Cdd:COG3883 246 AAGAGAAGAAGAAAGSAGAAGAAAGAAGAGAA 277
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
157-587 |
1.37e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.64 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 157 ERKLEELDGELALQRQELLL-EFESKMRKREH--EFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEA 233
Cdd:COG5185 150 EASYGEVETGIIKDIFGKLTqELNQNLKKLEIfgLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEII 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 234 TNAELERKLQSRAGELQDLEAMSRA--RVKDLEDKLHSVQLTRKKEeeTFKRKHEELDRLAREKDAvlvavkgaHVEQLQ 311
Cdd:COG5185 230 NIEEALKGFQDPESELEDLAQTSDKleKLVEQNTDLRLEKLGENAE--SSKRLNENANNLIKQFEN--------TKEKIA 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 312 ELqTRVLELQAHCETLEAQLRRAEWRQ--ADTAKEKDAAIDQLredastvksawdaqIAQLSKEMVSRDLQIQTLQE--E 387
Cdd:COG5185 300 EY-TKSIDIKKATESLEEQLAAAEAEQelEESKRETETGIQNL--------------TAEIEQGQESLTENLEAIKEeiE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 388 EVKLKAQVARSQQDIERYKQQLslaverERSLERDQVQLGlDWQRRCDDIErdqiqksEALIQGLSMAKSQVAAKLQETE 467
Cdd:COG5185 365 NIVGEVELSKSSEELDSFKDTI------ESTKESLDEIPQ-NQRGYAQEIL-------ATLEDTLKAADRQIEELQRQIE 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 468 QALQE-QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIskdfpSSEIQRLREQNTSLRNAIAQMRKEMEALS 546
Cdd:COG5185 431 QATSSnEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSV-----RSKKEDLNEELTQIESRVSTLKATLEKLR 505
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 767997349 547 HQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIR 587
Cdd:COG5185 506 AKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALENLIP 546
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
372-543 |
1.73e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 372 KEMVSRDLQIQTLQEEEVKLKAQVARSQQDIerYKQQLSLAVERERSLER---------------DQVQLGLDWQRRCDD 436
Cdd:pfam17380 305 KEEKAREVERRRKLEEAEKARQAEMDRQAAI--YAEQERMAMERERELERirqeerkrelerirqEEIAMEISRMRELER 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 437 IERDQIQKSEALIQGLSMAKSQvaaKLQETE--QALQEQEVVLKAVTLERDQAVQaLRMHGLPRPGAQMLLRQHEEEISK 514
Cdd:pfam17380 383 LQMERQQKNERVRQELEAARKV---KILEEErqRKIQQQKVEMEQIRAEQEEARQ-REVRRLEEERAREMERVRLEEQER 458
|
170 180
....*....|....*....|....*....
gi 767997349 515 dfpSSEIQRLREQNTSLRNAIAQMRKEME 543
Cdd:pfam17380 459 ---QQQVERLRQQEEERKRKKLELEKEKR 484
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
136-608 |
1.97e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 136 SDKNGEIDHHREQYENLK---WTLERKLEELDGElalQRQELLLEFESKMRKREHEFRLQADNMSNTalsrelkvkllHK 212
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEkqlNQLKSEISDLNNQ---KEQDWNKELKSELKNQEKKLEEIQNQISQN-----------NK 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 213 ELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEamsrarvKDLEDKLHSVQ-LTRKKEEetFKRKHEELDRL 291
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK-------KENQSYKQEIKnLESQIND--LESKIQNQEKL 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 292 AREKDavlvavkgahvEQLQELQTRVLELQAHCETLEAQlrraewrqadTAKEKDAaIDQLREDastvKSAWDAQIAQLS 371
Cdd:TIGR04523 407 NQQKD-----------EQIKKLQQEKELLEKEIERLKET----------IIKNNSE-IKDLTNQ----DSVKELIIKNLD 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 372 KEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLgldwqrrcddieRDQIQKSEALIQG 451
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL------------TKKISSLKEKIEK 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 452 LSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDqavqalrmhglprpgaqmlLRQHEEEISKdfpsseiqrLREQNTSL 531
Cdd:TIGR04523 529 LESEKKEKESKISDLEDELNKDDFELKKENLEKE-------------------IDEKNKEIEE---------LKQTQKSL 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 532 RNA-------IAQMRKEMEALSHQIPPPIQTAAESTD----ANQPDPEaggdaatpdyvlaLEAEIRTLKHKFKTLEKHL 600
Cdd:TIGR04523 581 KKKqeekqelIDQKEKEKKDLIKEIEEKEKKISSLEKelekAKKENEK-------------LSSIIKNIKSKKNKLKQEV 647
|
....*...
gi 767997349 601 EDVLDPLK 608
Cdd:TIGR04523 648 KQIKETIK 655
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
146-427 |
2.41e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 146 REQYENLKWTLERKLEELDGELALQRQeLLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAA 225
Cdd:TIGR00618 583 KEDIPNLQNITVRLQDLTEKLSEAEDM-LACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 226 ESLQRaeaTNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEetfkrKHEELDRLAREkdavlvavkga 305
Cdd:TIGR00618 662 EHALS---IRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELET-----HIEEYDREFNE----------- 722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 306 hveQLQELQTRVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQ 385
Cdd:TIGR00618 723 ---IENASSSLGSDLAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDT 798
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 767997349 386 EEEVKLKAQ---------------VARSQQDIERYKQQLSLAVERERSLERDQVQLG 427
Cdd:TIGR00618 799 HLLKTLEAEigqeipsdedilnlqCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
|
| ASY3-like |
pfam20435 |
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific ... |
55-213 |
2.59e-03 |
|
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific proteins, such as AtASY3 from Arabidopsis and PAIR3 from rice. They are coiled-coil domain proteins required for normal meiosis. PAIR3 is an axial element and part of the synaptonemal complex (SC) that forms between homologous chromosomes during meiosis. Members of this family are homologs of SCYP2 from vertebrates and fungal Red1/Rec10.
Pssm-ID: 466584 [Multi-domain] Cd Length: 793 Bit Score: 41.80 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 55 EDFVYNLQVLEERDLELERYDAAFAQA--------REWEEARRAEV-----SELKIEAAKLRQALAREARKV----EELQ 117
Cdd:pfam20435 610 DSFQHCSEMDEDEDEGLGRAVALFAMAlqnferklKSAAEKKSSEIiasvsEEIHLELENIKSHIITEAGKTsnlaKTKR 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 118 QQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR---QELLLEFESKMRKREHEFRLQAD 194
Cdd:pfam20435 690 KHAETRLQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGSIKKQRtshQKLIAHFEGGIETKLDDATKRID 769
|
170
....*....|....*....
gi 767997349 195 NMSNTALSRELKVKLLHKE 213
Cdd:pfam20435 770 SVNKSARGKMLQLKMIVAE 788
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
4-426 |
2.78e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 4 LGSEPALNELLLRKEEEWRALQAHRTQLQE--AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQA 81
Cdd:pfam05557 23 LEHKRARIELEKKASALKRQLDRESDRNQElqKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 82 REWEEARRAEVSELKIEAAKLRQALAREARKVEELQqqqqlafQEHRLELERVhsdkngeidhhrEQYENLKWTLERKle 161
Cdd:pfam05557 103 REVISCLKNELSELRRQIQRAELELQSTNSELEELQ-------ERLDLLKAKA------------SEAEQLRQNLEKQ-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 162 eldgelalqrQELLLEFESKMRKREHEFRLQADN--MSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 239
Cdd:pfam05557 162 ----------QSSLAEAEQRIKELEFEIQSQEQDseIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 240 rKLQSRAGELQDleamSRARVKDLEDKLHSVQLTRKKEEETFKRKHEEL---DRLARE------KDAVLVAVKGAHVEQL 310
Cdd:pfam05557 232 -DLKRKLEREEK----YREEAATLELEKEKLEQELQSWVKLAQDTGLNLrspEDLSRRieqlqqREIVLKEENSSLTSSA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 311 QELQTRVLELQAHC--------------ETLEAQLRRAEWRQADTAKEKD---AAIDQLREDASTVKSAwdaqiAQLSKE 373
Cdd:pfam05557 307 RQLEKARRELEQELaqylkkiedlnkklKRHKALVRRLQRRVLLLTKERDgyrAILESYDKELTMSNYS-----PQLLER 381
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 767997349 374 MVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlAVERERSLERDQVQL 426
Cdd:pfam05557 382 IEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQ-TLERELQALRQQESL 433
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
384-546 |
2.90e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 384 LQEEEVKLKAQVARSQQDIERYKQ---------QLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSM 454
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQknglvdlseEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 455 AKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhglprpgAQM--LLRQHEEEISKDFPS--SEIQRLREQNTS 530
Cdd:COG3206 260 LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALR--------AQIaaLRAQLQQEAQRILASleAELEALQAREAS 331
|
170
....*....|....*.
gi 767997349 531 LRNAIAQMRKEMEALS 546
Cdd:COG3206 332 LQAQLAQLEARLAELP 347
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
308-488 |
3.58e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 308 EQLQELQTRVLELQAHCETLEAQ---LRRAEWRQADTAKEKDAAIDQLREDASTVKSAWD---AQIAQLSKEMVSRDLQI 381
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYnknIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEeltDELLNLVMDIEDPSAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 382 QTLQEEEVKLKAQVARSQQDIERY---------KQQLSLAVERERSLERDQVQLgldwQRRCDDIE--RDQIQKSEALIQ 450
Cdd:PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYekggvcptcTQQISEGPDRITKIKDKLKEL----QHSLEKLDtaIDELEEIMDEFN 333
|
170 180 190
....*....|....*....|....*....|....*...
gi 767997349 451 GLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAV 488
Cdd:PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
210-423 |
3.80e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 210 LHKELEAL-KEAGAKAAESLQRAEATNAELeRKLQSRAGELQDLeamsRARVKDLEDKLHSVQltrkKEEETFKRKHEEL 288
Cdd:COG4717 51 LEKEADELfKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAEL----QEELEELEEELEELE----AELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 289 DRLAREKDavLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADtAKEKDAAIDQLREDASTVKSawdaqia 368
Cdd:COG4717 122 EKLLQLLP--LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAE-LAELQEELEELLEQLSLATE------- 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767997349 369 qlsKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQ 423
Cdd:COG4717 192 ---EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
9-444 |
4.12e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 9 ALNELLLRKEEEWRALQAHRTQ---LQEAALQDTRSQLEEAQGKLRCLQEDFVynlqvlEERDLELERYDAAFAQAREWE 85
Cdd:pfam12128 287 ELNQLLRTLDDQWKEKRDELNGelsAADAAVAKDRSELEALEDQHGAFLDADI------ETAAADQEQLPSWQSELENLE 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 86 EARRA-EVSELKIEAAKLRQALARE---ARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTL---ER 158
Cdd:pfam12128 361 ERLKAlTGKHQDVTAKYNRRRSKIKeqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFneeEY 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 159 KLEELDGELALQRQELLLEFESKMRKREHEFRLqaDNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEatnael 238
Cdd:pfam12128 441 RLKSRLGELKLRLNQATATPELLLQLENFDERI--ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAS------ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 239 eRKLQSRAGELQDLEAMS-----------RARVKDLEDKLHSV----QLTR-----------KKEEETFKRKHEELDR-- 290
Cdd:pfam12128 513 -RRLEERQSALDELELQLfpqagtllhflRKEAPDWEQSIGKVispeLLHRtdldpevwdgsVGGELNLYGVKLDLKRid 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 291 ----------LAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAewRQADTAKEKDAA--IDQLREDAST 358
Cdd:pfam12128 592 vpewaaseeeLRERLDKAEEALQSAR-EKQAAAEEQLVQANGELEKASREETFA--RTALKNARLDLRrlFDEKQSEKDK 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 359 VKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIE 438
Cdd:pfam12128 669 KNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE 748
|
....*.
gi 767997349 439 RDQIQK 444
Cdd:pfam12128 749 LKALET 754
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
62-297 |
4.70e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 62 QVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEelqqqqqlAFQEHRLELERVHSDKNGE 141
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------ALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 142 IDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLlhKELEALKEAG 221
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--AELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767997349 222 AKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDA 297
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| Rab5-bind |
pfam09311 |
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow ... |
212-492 |
4.70e-03 |
|
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes.
Pssm-ID: 462752 [Multi-domain] Cd Length: 307 Bit Score: 40.34 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 212 KELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEE---ETFKRKHEEL 288
Cdd:pfam09311 9 KQLQAIQEQEAETRDQVKKLQEMLRQANDQLEKTMKDKKELEDKMNQLSEETSNQVSTLAKRNQKSEtllDELQQAFSQA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 289 DRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHcETLEAQLRRAE-WRQADTAKEKDAAIDQLREDASTVKSAWDAQI 367
Cdd:pfam09311 89 KRNFQDQLAVLMDSREQVSDELVRLQKDNESLQGK-HSLHVSLQQAEkFDMPDTVQELQELVLKYREELIEVRTAADHME 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 368 AQLSKEMVSRDLQIqtlQEEEVKLKAQVARSQQDIERYKQQL----SLAVERERS-LERDQVQLGLDWQRRcddierdQI 442
Cdd:pfam09311 168 EKLKAEILFLKEQI---QAEQCLKENLEETLQAEIENCKEEIasisSLKVELERIkAEKEQLENGLTEKIR-------QL 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 767997349 443 QKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALR 492
Cdd:pfam09311 238 EDLQTTKGSLETQLKKETNEKAAVEQLVFEEKNKAQRLQTELDVSEQVQR 287
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
230-422 |
5.53e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 230 RAEATNAELERKLQSRAGELQDLEAmsrarvkdledklhsVQLTRKKEEETFKRKHEELDRLAREKDavlvavkgahvEQ 309
Cdd:pfam07888 28 RAELLQNRLEECLQERAELLQAQEA---------------ANRQREKEKERYKRDREQWERQRRELE-----------SR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 310 LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDaQIAQLSKEMVSRDLQIQTLQEEEV 389
Cdd:pfam07888 82 VAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEE-DIKTLTQRVLERETELERMKERAK 160
|
170 180 190
....*....|....*....|....*....|...
gi 767997349 390 KLKAQVARSQQDIERYKQQLSLAVERERSLERD 422
Cdd:pfam07888 161 KAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
214-490 |
5.61e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 214 LEALKEAGAKAAESLQRAEAT--NAELERK---------------LQSRAGELQD-LEAMSRARVKDLEDKLHSVQLtrK 275
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARleAAEEEVDslksqladyqqaldvQQTRAIQYQQaVQALEKARALCGLPDLTPENA--E 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 276 KEEETFKRKHEELDRL---AREKDAVLVAVKGAHVEQLQELQTRVLEL---QAHcETLEAQLRRaeWR----QADTAKEK 345
Cdd:COG3096 441 DYLAAFRAKEQQATEEvleLEQKLSVADAARRQFEKAYELVCKIAGEVersQAW-QTARELLRR--YRsqqaLAQRLQQL 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 346 DAAIDQLREDASTVKSAwDAQIAQLSKEMvSRDLQIQTLQEEEVklkaqvARSQQDIERYKQQLSLAVERERSLERDQVQ 425
Cdd:COG3096 518 RAQLAELEQRLRQQQNA-ERLLEEFCQRI-GQQLDAAEELEELL------AELEAQLEELEEQAAEAVEQRSELRQQLEQ 589
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767997349 426 LGLDwQRRCDDIERDQIQKSEALIQgLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQA 490
Cdd:COG3096 590 LRAR-IKELAARAPAWLAAQDALER-LREQSGEALADSQEVTAAMQQLLEREREATVERDELAAR 652
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
210-420 |
5.72e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 210 LHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkkeeetfkRKHEEld 289
Cdd:pfam07888 46 LLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELS-----------ASSEE-- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 290 rLAREKDAvLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEwrqaDTAKEkdaAIDQLREDASTvKSAWDAQIAQ 369
Cdd:pfam07888 113 -LSEEKDA-LLAQRAAHEARIRELEEDIKTLTQRVLERETELERMK----ERAKK---AGAQRKEEEAE-RKQLQAKLQQ 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 767997349 370 LSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLE 420
Cdd:pfam07888 183 TEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENE 233
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
139-425 |
6.52e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 39.89 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 139 NGEIDHHREQYENLKWTLERKLEELDgELALQRQELllefeskmRKREHEFRLQADNMsntalsRELKVKLLhKELEALK 218
Cdd:COG1340 14 EEKIEELREEIEELKEKRDELNEELK-ELAEKRDEL--------NAQVKELREEAQEL------REKRDELN-EKVKELK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 219 EAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRaRVKDLEDKLHSVQLTRKKEEETFkrkhEELDRLAREKDAV 298
Cdd:COG1340 78 EERDELNEKLNELREELDELRKELAELNKAGGSIDKLRK-EIERLEWRQQTEVLSPEEEKELV----EKIKELEKELEKA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 299 LVAVKGAhvEQLQELQTRVLELQAHCETLEAQLRRAewrqADTAKEKDAAIDQLREdastvksawdaQIAQLSKEMVSRD 378
Cdd:COG1340 153 KKALEKN--EKLKELRAELKELRKEAEEIHKKIKEL----AEEAQELHEEMIELYK-----------EADELRKEADELH 215
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 767997349 379 LQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQ 425
Cdd:COG1340 216 KEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEK 262
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
32-415 |
6.62e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 40.40 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 32 QEAALQDTRSQLEEaqgkLRCLQEDFVynlQVLEERDLELERYDAAFAQAREWEEArraeVSELKIEAAKLRQAL--ARE 109
Cdd:pfam05701 133 HAAAVAELKSVKEE----LESLRKEYA---SLVSERDIAIKRAEEAVSASKEIEKT----VEELTIELIATKESLesAHA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 110 A-RKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKwTLERKLEELDGELALQRQELLLEFESKMRKREHE 188
Cdd:pfam05701 202 AhLEAEEHRIGAALAREQDKLNWEKELKQAEEELQRLNQQLLSAK-DLKSKLETASALLLDLKAELAAYMESKLKEEADG 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 189 frlqADNMSNTALSRELKVKLLHKELEALKEAGAKA---AESLQRAEAT-NAELERKLQSRAgELQDLEAMSRARVKDLE 264
Cdd:pfam05701 281 ----EGNEKKTSTSIQAALASAKKELEEVKANIEKAkdeVNCLRVAAASlRSELEKEKAELA-SLRQREGMASIAVSSLE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 265 DKLHSVQ----LTRKKEEETFKRKHE---ELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAEwR 337
Cdd:pfam05701 356 AELNRTKseiaLVQAKEKEAREKMVElpkQLQQAAQEAEEAKSLAQAAR-EELRKAKEEAEQAKAAASTVESRLEAVL-K 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 338 QADTAKEKD----AAIDQLREDASTV-----------------------KSAWDAQiaQLSKEMVSRDL-QIQTLQEEEV 389
Cdd:pfam05701 434 EIEAAKASEklalAAIKALQESESSAestnqedsprgvtlsleeyyelsKRAHEAE--ELANKRVAEAVsQIEEAKESEL 511
|
410 420
....*....|....*....|....*.
gi 767997349 390 KLKAQVARSQQDIERYKQQLSLAVER 415
Cdd:pfam05701 512 RSLEKLEEVNREMEERKEALKIALEK 537
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
188-343 |
9.06e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.32 E-value: 9.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 188 EFRLQADNmSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsrarvkDLEdkl 267
Cdd:PRK11448 133 PFVPPEDP-ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEA-------QLE--- 201
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767997349 268 hsvQLtRKKEEETfkrkheELDRLAREKDAVLVAVKgahVEQLQELQTRVLelqahcetLEAQLRRAEWrQADTAK 343
Cdd:PRK11448 202 ---QL-QEKAAET------SQERKQKRKEITDQAAK---RLELSEEETRIL--------IDQQLRKAGW-EADSKT 255
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
15-425 |
9.45e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 15 LRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFvyNLQVLEERDLELERYDA----AFAQA--REWEEAR 88
Cdd:PRK04863 275 MRHANERRVHLEEALELR-RELYTSRRQLAAEQYRLVEMAREL--AELNEAESDLEQDYQAAsdhlNLVQTalRQQEKIE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 89 RAEVSELKIEAAKLRQALAR-EARKVEELQQQQQLAFQEHRLELERVHSDKNGEID--HHRE-QYENLKWTLER--KLEE 162
Cdd:PRK04863 352 RYQADLEELEERLEEQNEVVeEADEQQEENEARAEAAEEEVDELKSQLADYQQALDvqQTRAiQYQQAVQALERakQLCG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 163 LDgELALQRQELLLEfeskmrkrehEFRLQADNMSNTALSRELKVKLLhkelEALKEAGAKAAESLQ-------RAEATN 235
Cdd:PRK04863 432 LP-DLTADNAEDWLE----------EFQAKEQEATEELLSLEQKLSVA----QAAHSQFEQAYQLVRkiagevsRSEAWD 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 236 A--ELERKLQSRAGELQDLEAMsRARVKDLEDKLhsvqltrkkeeetfkRKHEELDRLAREKDAVLvavkGAHVEQLQEL 313
Cdd:PRK04863 497 VarELLRRLREQRHLAEQLQQL-RMRLSELEQRL---------------RQQQRAERLLAEFCKRL----GKNLDDEDEL 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 314 QTRVLELQAHCETLEAQLRRAEWRQADTAKEkdaaIDQLredastvksawDAQIAQLSKemvsRDLQIQTLQEEEVKLKA 393
Cdd:PRK04863 557 EQLQEELEARLESLSESVSEARERRMALRQQ----LEQL-----------QARIQRLAA----RAPAWLAAQDALARLRE 617
|
410 420 430
....*....|....*....|....*....|....
gi 767997349 394 QVARSQQDIERYKQQLSLAVERERSL--ERDQVQ 425
Cdd:PRK04863 618 QSGEEFEDSQDVTEYMQQLLERERELtvERDELA 651
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
435-602 |
9.49e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 9.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 435 DDIERDQIqKSEaLIQGLSMAksQVAAKLQETEQALQEQEVVLKAVTLERDQAvqalrmhglprpgaqmllrQHEEEISK 514
Cdd:COG2433 361 PDVDRDEV-KAR-VIRGLSIE--EALEELIEKELPEEEPEAEREKEHEERELT-------------------EEEEEIRR 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767997349 515 dfPSSEIQRLREQNTSLRNAIAQMRKEMEALShqipppiqtaAESTDANQpdpEAGGDAATPDYVLALEAEIRTLKHKFK 594
Cdd:COG2433 418 --LEEQVERLEAEVEELEAELEEKDERIERLE----------RELSEARS---EERREIRKDREISRLDREIERLERELE 482
|
....*...
gi 767997349 595 TLEKHLED 602
Cdd:COG2433 483 EERERIEE 490
|
|
| |
