|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
576-1076 |
1.19e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 101.55 E-value: 1.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 576 LKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQR---HLAFIDQLIEDKKVLSEKCEAVV 652
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEElrlELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 653 AELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSL 732
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE--LEELEEELEE-----AEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 733 hEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAA 812
Cdd:COG1196 371 -EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 813 RQRAELEELRQQLEESSSALTRALRAefEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQELREEIR 892
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALL--EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 893 KGRDKEIEL---VIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQG 969
Cdd:COG1196 528 VLIGVEAAYeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 970 LVRQKERA-LEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAS--EEETRQAKAELATLQARQQLELEEVHRRVKTALARK 1046
Cdd:COG1196 608 LREADARYyVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510
....*....|....*....|....*....|
gi 767994121 1047 EEAVSSLRTQHEAAVKRADHLEELLEQHRR 1076
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERL 717
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
576-1076 |
2.16e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.15 E-value: 2.16e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 576 LKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEkalsrQLQRQREHYEATIQRHLAFIDQLIEDKKVLsekcEAVVAEL 655
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELA-----RLEQDIARLEERRRELEERLEELEEELAEL----EEELEEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 656 KQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRGLEPEIQKLIARHKQEvrrlkslhea 735
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE--LAEAEEELEELAEELLEALRAAAELAAQLE---------- 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 736 ELLQSDERASQRCLRQAEELREQLEREKEALgqQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQR 815
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELE--EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 816 AELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELntLKQQLELERQAWEAGRTRKEAWLLNREQELREEIRKGR 895
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 896 DKEIE-LVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQK 974
Cdd:COG1196 560 AAAIEyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 975 ERALEDAQAVneQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLR 1054
Cdd:COG1196 640 VTLAGRLREV--TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
490 500
....*....|....*....|..
gi 767994121 1055 TQHEAAVKRADHLEELLEQHRR 1076
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLE 739
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
714-1061 |
3.17e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.38 E-value: 3.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAL--GQQERERARQRFQQHLEQEQWALQQ 791
Cdd:COG1196 206 ERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELeaELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 792 QRQRLYsEVAEERERLGQQAARQRAELEELRQQLEEsssaLTRALRAEFEKGREEQERRHqmELNTLKQQLELERQAWEA 871
Cdd:COG1196 286 AQAEEY-ELLAELARLEQDIARLEERRRELEERLEE----LEEELAELEEELEELEEELE--ELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 872 GRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCS 951
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 952 ELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLE 1031
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350
....*....|....*....|....*....|
gi 767994121 1032 LEEVHRRVKTALARKEEAVSSLRTQHEAAV 1061
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
577-1076 |
4.66e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.57 E-value: 4.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 577 KLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELK 656
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 657 QEDQRCTERVAQAQAQhelEIKKLKELMSATEKARREKwiSEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAE 736
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAE---EAKKAAEAAKAEAEAAADE--AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 737 LLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEV---AEERERLGQ--QA 811
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkkAEEAKKADEakKK 1478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 812 ARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMelntlKQQLELERQAWEAGRTR--KEAWLLNREQELR- 888
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE-----AKKADEAKKAEEAKKADeaKKAEEKKKADELKk 1553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 889 -EEIRKGRDKEIELVIHRLEAD--MALAK-EESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKgQLGEAEGEN 964
Cdd:PTZ00121 1554 aEELKKAEEKKKAEEAKKAEEDknMALRKaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEK 1632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 965 LRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE----EETRQAKAELATLQARQQLELEEVHRRVK 1040
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEakkaEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
490 500 510
....*....|....*....|....*....|....*.
gi 767994121 1041 TALARKEEavssLRTQHEAAVKRADHLEELLEQHRR 1076
Cdd:PTZ00121 1713 EEKKKAEE----LKKAEEENKIKAEEAKKEAEEDKK 1744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
791-1071 |
1.43e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 791 QQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAwE 870
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-Q 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 871 AGRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESeKAAESRIKRLRdkyeAELSELEQSERKLQERC 950
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL-KALREALDELR----AELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 951 SELKGQLGEAEgenLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAELATLQARQ 1028
Cdd:TIGR02168 827 ESLERRIAATE---RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEleALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 767994121 1029 QlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELL 1071
Cdd:TIGR02168 904 R-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
280-1072 |
3.51e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 77.87 E-value: 3.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 280 RHQVQRRGAGAARLEhllQAKREEQRQRSGEGTLLDLHQQKEAARRKAREEKARQARRAAiqelQQKRALRAQKASTAER 359
Cdd:PTZ00121 1165 KAEEARKAEDAKKAE---AARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKK 1237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 360 GPPENPRETRVpgmRQPAQELSPTPGGTAHQALKANNTGGGLPAAGPGDRCLPTSDSSPEPQQPPEDRTQDVLaqdaagd 439
Cdd:PTZ00121 1238 DAEEAKKAEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA------- 1307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 440 nlemmapsRGSAKSRGPLEELLHTLQLLEKEPDVLPRPrthhrgryawASEVTTEDDASSLTADNLEKfgKLSAFPEPPE 519
Cdd:PTZ00121 1308 --------KKKAEEAKKADEAKKKAEEAKKKADAAKKK----------AEEAKKAAEAAKAEAEAAAD--EAEAAEEKAE 1367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 520 DGTL-LSEAKLQSIMSFLDEMEKSGQDQLDSQQEGWVPEAGPgpLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQR 598
Cdd:PTZ00121 1368 AAEKkKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 599 DLTARRVKETEKALSRQLQRQREHYEATiqrhlafidqliEDKKVLSEKCEAvvAELKQEDQRCTERVAQAQAQHElEIK 678
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKAD------------EAKKKAEEAKKA--DEAKKKAEEAKKKADEAKKAAE-AKK 1510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 679 KLKELMSATEKARREKW-ISEKTKKIKEVtvRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELRE 757
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAkKAEEAKKADEA--KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK 1588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 758 QLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSsaltraLR 837
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK------IK 1662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 838 AEFEKGREEQERRHQMElntLKQQLELERQAWEAGRTRKEawllnrEQELREEIRKGRDKEIElvihRLEADMALAKEES 917
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKEAE------EAKKAEELKKKEAEEKK----KAEELKKAEEENK 1729
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 918 EKAAESRIKRLRDKYEAELSELEQSERKlqeRCSELKGQLGEAEGENLRLQGLVRQKERALEDAQ---AVNEQLSSERSN 994
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKK---KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKrrmEVDKKIKDIFDN 1806
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 995 LAQVIRQEFEDRLA--ASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLE 1072
Cdd:PTZ00121 1807 FANIIEGGKEGNLVinDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEE 1886
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
688-1076 |
6.49e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 6.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 688 EKARREKWISEKtKKIKEVTVRGLE-PEIQKLIARHKQEVRRLKSLHEAEL--LQSDERASQRCLRQAEELREQLEREKE 764
Cdd:COG1196 210 EKAERYRELKEE-LKELEAELLLLKlRELEAELEELEAELEELEAELEELEaeLAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 765 ALGQQERERAR------------QRFQQHLEQEQWALQQQRQRLySEVAEERERLGQQAARQRAELEELRQQLEESSSAL 832
Cdd:COG1196 289 EEYELLAELARleqdiarleerrRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 833 TRALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKEawLLNREQELREEIRKGRDKEIELvihRLEADMAL 912
Cdd:COG1196 368 LEAEAELAEAEEELEELAEE-LLEALRAAAELAAQLEELEEAEEA--LLERLERLEEELEELEEALAEL---EEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 913 AKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVneqlsSER 992
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA-----LLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 993 SNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLE 1072
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA 596
|
....
gi 767994121 1073 QHRR 1076
Cdd:COG1196 597 IGAA 600
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1024 |
2.55e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 2.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREhyEATIQRHLAFIDQLIEDKKVLSEKCEAVVAE 654
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE--LLEALRAAAELAAQLEELEEAEEALLERLER 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 655 LKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHE 734
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 735 AELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRfqqhlEQEQWALQQQRQRLYSEVAEERERLGQQAARQ 814
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE-----AALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 815 RAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQELREEIRKG 894
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 895 RDKEIELVIHRLEADmALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERcsELKGQLGEAEGENLRLQGLVRQK 974
Cdd:COG1196 654 EGGSAGGSLTGGSRR-ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER--ELAEAEEERLEEELEEEALEEQL 730
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 767994121 975 ERALEDAQAVNEQLSSERSNLAQVIRQEFEDRlAASEEETRQAKAELATL 1024
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDL-EELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
698-1027 |
9.38e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 9.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 698 EKTKKIKEVT--VRGLEPEIQKLiarhKQEVRRLKslHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERAR 775
Cdd:TIGR02168 674 ERRREIEELEekIEELEEKIAEL----EKALAELR--KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 776 QRFQQHLEQEQwaLQQQRQRLYSEVAEERERLgqqaarqrAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL 855
Cdd:TIGR02168 748 RIAQLSKELTE--LEAEIEELEERLEEAEEEL--------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 856 NTLKQQLELERQAWEAGRTRKEAWLLNREQELREEirkgrdkEIELVIHRLEaDMALAKEESEKAAESrikrlrdkYEAE 935
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSE-------DIESLAAEIE-ELEELIEELESELEA--------LLNE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 936 LSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETR 1015
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961
|
330
....*....|..
gi 767994121 1016 QAKAELATLQAR 1027
Cdd:TIGR02168 962 KIEDDEEEARRR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
776-1075 |
1.33e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 776 QRFQQHLEQEQWALQQQRqrlYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRaLRAEFEKGREEQERRhQMEL 855
Cdd:TIGR02168 216 KELKAELRELELALLVLR---LEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEVSELEEEIEEL-QKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 856 NTLKQQL-ELERQAWEAgrTRKEAWLLNREQELREEIRKGRDKEIEL--VIHRLEADMALAKEESEkAAESRIKRLRDKY 932
Cdd:TIGR02168 291 YALANEIsRLEQQKQIL--RERLANLERQLEELEAQLEELESKLDELaeELAELEEKLEELKEELE-SLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 933 EaelsELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEE 1012
Cdd:TIGR02168 368 E----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994121 1013 ETRQAKAELATLQARQQLELEEVHRRvktaLARKEEAVSSLRTQHEAAVKRADHLEELLEQHR 1075
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREE----LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1079 |
3.45e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.86 E-value: 3.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 567 SEVSTSVMRLKLEVEEKKQAMLLLQRA------------LAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFI 634
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAeeakkkadaakkKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 635 DQLIEDKKVLSEKCEAVVAELK-QEDQRCTERVAQAQAQHElEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEP 713
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKaEEDKKKADELKKAAAAKK-KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 714 EIQKLIARHKQEVRRL----KSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWAL 789
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKAdeakKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA 1536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 790 QQQRQRLYSEVAEERERLGQ-QAARQRAELEELRQQLEESSSALTRAlraEFEKGREEQERRHQMELNTLKQQLELErQA 868
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKA---EEAKKAEEARIEEVMKLYEEEKKMKAE-EA 1612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 869 WEAGRTRKEAWLLNREQELREEIRKGRDKEIELVihRLEADMALAKEESE-KAAESRIKRLRDKYEAE-LSELEQSERKL 946
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK--KKAEELKKAEEENKiKAAEEAKKAEEDKKKAEeAKKAEEDEKKA 1690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 947 QErcselkgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAseEETRQAKAELATLQA 1026
Cdd:PTZ00121 1691 AE-------ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA--EEAKKDEEEKKKIAH 1761
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 767994121 1027 RQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRA-----DHLEELLEQHRRPTP 1079
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKikdifDNFANIIEGGKEGNL 1819
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
676-1035 |
1.09e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 676 EIKKLKELMSATEKARREkwisektkkIKEVTVRglEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQaeel 755
Cdd:TIGR02169 161 EIAGVAEFDRKKEKALEE---------LEEVEEN--IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG---- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 756 rEQLEREKEALGQQERERARQRfqQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEE----LRQQLEESSSA 831
Cdd:TIGR02169 226 -YELLKEKEALERQKEAIERQL--ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 832 LTRALRAEFEKGRE-----EQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLlNREQELREEIRKGRDKeielvIHRL 906
Cdd:TIGR02169 303 IASLERSIAEKEREledaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT-EEYAELKEELEDLRAE-----LEEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 907 EADMALAKEESeKAAESRIkrlrDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNE 986
Cdd:TIGR02169 377 DKEFAETRDEL-KDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 767994121 987 QLSSERSNLAQV---IRQEFEDR---LAASEEETRQAKAELATLQARQQLELEEV 1035
Cdd:TIGR02169 452 KQEWKLEQLAADlskYEQELYDLkeeYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
638-1001 |
1.12e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 638 IEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKK----LKELMSATEKARREK-----WISEKTKKIKEVTV 708
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKreyeGYELLKEKEALERQKeaierQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 709 R--GLEPEIQKLIARHKQEVRRLKSLHEAELL--QSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQ 784
Cdd:TIGR02169 259 EisELEKRLEEIEQLLEELNKKIKDLGEEEQLrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 785 EQWALQQQRQRLysevaeERERLGQQAARQRAELEELRQQLEESSSALtRALRAEFEKGREEQE---RRHQMELNTLKQQ 861
Cdd:TIGR02169 339 EELEREIEEERK------RRDKLTEEYAELKEELEDLRAELEEVDKEF-AETRDELKDYREKLEklkREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 862 LELERQAWEAGRtrkeawllnreqELREEIRKGRDKEIELVIHRLEADMALAKEESEKaaeSRIKRLRDKYEAELSELEQ 941
Cdd:TIGR02169 412 QEELQRLSEELA------------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL---EQLAADLSKYEQELYDLKE 476
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 942 SERKLQERCSELKGQLGEAEGEnlrlqglVRQKERALEDAQAVNEQLSSERSNLAQVIRQ 1001
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQ-------ARASEERVRGGRAVEEVLKASIQGVHGTVAQ 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1001 |
2.74e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 2.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV--V 652
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAeeE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 653 AELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRG----LEPEIQKLIARHKQEVRR 728
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkaaLLLAGLRGLAGAVAVLIG 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 729 LKSLHEAELLQSDERASQRCLR----------QAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYS 798
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVeddevaaaaiEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 799 EVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEA 878
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 879 WLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQ------SERKLQERCSE 952
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEelpeppDLEELERELER 771
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 767994121 953 LKGQLGEAEGENLrlqglvrqkeRALEDAQAVNEQ----------LSSERSNLAQVIRQ 1001
Cdd:COG1196 772 LEREIEALGPVNL----------LAIEEYEELEERydflseqredLEEARETLEEAIEE 820
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-1073 |
3.57e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 567 SEVSTSVMRLKLEVEEKKQAMLLLQRAL----AQQRDLTARrvKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKK 642
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELyalaNEISRLEQQ--KQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 643 VLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELmsaTEKARREKWISEKTKKIKEvTVRGLEPEIQKLIARH 722
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL---ETLRSKVAQLELQIASLNN-EIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 723 KQEVRRLKSlHEAELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQRFQQhLEQEQWALQQQRQRLYSEVAE 802
Cdd:TIGR02168 417 ERLQQEIEE-LLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEE-AEQALDAAERELAQLQARLDS 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 803 ERERLGQQAARQRAELEELRQQL----------------EESSSALTRALRA-----------------EFEKgREEQER 849
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNQSglsgilgvlselisvdEGYEAAIEAALGGrlqavvvenlnaakkaiAFLK-QNELGR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 850 RHQMELNTLKQQL----ELERQAWEAGRTRK---------------EAWL--------LNREQELREEIRKG-------- 894
Cdd:TIGR02168 573 VTFLPLDSIKGTEiqgnDREILKNIEGFLGVakdlvkfdpklrkalSYLLggvlvvddLDNALELAKKLRPGyrivtldg 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 895 ----------------------RDKEIElvihRLEADMALAkEESEKAAESRIKRLRDKYEAELSELEQSERKLQE---R 949
Cdd:TIGR02168 653 dlvrpggvitggsaktnssileRRREIE----ELEEKIEEL-EEKIAELEKALAELRKELEELEEELEQLRKELEElsrQ 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 950 CSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQaRQQ 1029
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLKEELKALR-EAL 805
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 767994121 1030 LELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1073
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1076 |
3.59e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.14 E-value: 3.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 581 EEKKQAMLLLQRALAQQRDLTArrVKETEKALSRQLQRQREHYEATIQRHLAFIDqliedkkvlsEKCEAVVAELKQEDQ 660
Cdd:TIGR00618 369 EISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQREQATIDTRTSAFRD----------LQGQLAHAKKQQELQ 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 661 RCTERVAQAQAQHELEIKKLKELMsATEKARREKWISEKTKKIKEVTVRglEPEIQKLIARHKQEVRRLKSLHEAELLQS 740
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIH-LQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGSCIHP 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 741 DERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQeQWALQQQRQRL---YSEVAEERERLGQQAARQRAE 817
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ-RASLKEQMQEIqqsFSILTQCDNRSKEDIPNLQNI 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 818 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLLnrEQELREEIRKGRDK 897
Cdd:TIGR00618 593 TVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLT--QERVREHALSIRVL 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 898 EIELVIHRLeadMALAKEESEKAAESRIKRLRDKYEAELSELEQSE----RKLQERCSELKGQLGEAEGENLRLQGLVRQ 973
Cdd:TIGR00618 671 PKELLASRQ---LALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIeeydREFNEIENASSSLGSDLAAREDALNQSLKE 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 974 ---------KERALEDAQA-----VNEQLSSERSNLAQVI------RQEFEDRLAASEEETRQAKAELATLQARQQLELE 1033
Cdd:TIGR00618 748 lmhqartvlKARTEAHFNNneevtAALQTGAELSHLAAEIqffnrlREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV 827
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 767994121 1034 EVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1076
Cdd:TIGR00618 828 QEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-963 |
4.27e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 4.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 712 EPEIQKLIARHKQEVRRLKSLHEAELlqsDERASQRCLRQAEELREQLEREKEALGQQERERAR------QRFQQHLEQE 785
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALE---DAREQIELLEPIRELAERYAAARERLAELEYLRAAlrlwfaQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 786 QWALQQQRQRLysevAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERR------HQMELNTLK 859
Cdd:COG4913 297 LEELRAELARL----EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERerrrarLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 860 QQLELERQAWEAGRTRKEAwLLNREQELREEIRKGRDKeielvihrleadmalakeesEKAAESRIKRLRDKYEAELSEL 939
Cdd:COG4913 373 LPLPASAEEFAALRAEAAA-LLEALEEELEALEEALAE--------------------AEAALRDLRRELRELEAEIASL 431
|
250 260
....*....|....*....|....*...
gi 767994121 940 EQS----ERKLQERCSELKGQLGEAEGE 963
Cdd:COG4913 432 ERRksniPARLLALRDALAEALGLDEAE 459
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-1065 |
6.07e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 6.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 537 DEMEKSGQDQLDSQQEGWVPEAGPGPLELGSEVSTSvmrlklevEEKKQAMLLLQRALAQQRDLTARRVKETEKAL-SRQ 615
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKA--------EEAKKKAEDARKAEEARKAEDARKAEEARKAEdAKR 1153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 616 LQRQREHYEAtiqrHLAFIDQLIEDKKVLSEKCEAVVAElKQEDQRCTERVAQAQAQHELE-IKKLKELMSATEKARREK 694
Cdd:PTZ00121 1154 VEIARKAEDA----RKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEAARKAEeERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 695 WISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERA 774
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 775 RQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSaltralRAEFEKGREEQERRHQME 854
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE------KAEAAEKKKEEAKKKADA 1382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 855 lntLKQQLELERQAWEAGRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEA 934
Cdd:PTZ00121 1383 ---AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 935 ELSELEQSERKlqeRCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE--- 1011
Cdd:PTZ00121 1460 EEAKKKAEEAK---KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAkka 1536
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 767994121 1012 EETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRAD 1065
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
610-1076 |
6.23e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 6.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 610 KALSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAqhelEIKKLKELMSATEK 689
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRT-ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 690 ARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK---QEVRRLKSLHEAEL-------------------------LQSD 741
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleEKVKELKELKEKAEeyiklsefyeeyldelreiekrlsrLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 742 ERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYS----------------------E 799
Cdd:PRK03918 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKrltgltpeklekeleelekakeE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 800 VAEERERLGQQAARQRAELEELRQQLEESSSALTRAL---RAEFEKGREEQERRHQMELNTLKQQL--------ELERQA 868
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgRELTEEHRKELLEEYTAELKRIEKELkeieekerKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 869 WEAGRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA--ESRIKRLRDK------YEAELSELE 940
Cdd:PRK03918 483 RELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIklKGEIKSLKKElekleeLKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 941 QSERKLQERCSELKGQLGE-----AEGENLRLQGLVRQKERALE--DAQAVNEQLSSERSNLAQVIRQEFEDrLAASEEE 1013
Cdd:PRK03918 563 KKLDELEEELAELLKELEElgfesVEELEERLKELEPFYNEYLElkDAEKELEREEKELKKLEEELDKAFEE-LAETEKR 641
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994121 1014 TRQAKAELATLQARQQlelEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1076
Cdd:PRK03918 642 LEELRKELEELEKKYS---EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
604-901 |
7.30e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 59.75 E-value: 7.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 604 RVKETEKALSRQLQRQREHYEATIQRHLAFIDQ--LIEDKKVLSEKCEAVVAELKQED-QRCTERVAQAQAQheLEIKKL 680
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQaaIYAEQERMAMERERELERIRQEErKRELERIRQEEIA--MEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 681 KEL----MSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSLHE---AELLQSDERASQRCLRQAE 753
Cdd:pfam17380 378 RELerlqMERQQKNERVRQELEAARKVKI-----LEEERQRKIQQQKVEMEQIRAEQEearQREVRRLEEERAREMERVR 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 754 ELREQLEREKEALGQQERERARQRFQQHLEQEQWAL-QQQRQRLYSEVAEERERLGQQAARQRAELEelrQQLEESSSAL 832
Cdd:pfam17380 453 LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRaEEQRRKILEKELEERKQAMIEEERKRKLLE---KEMEERQKAI 529
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767994121 833 TRalraEFEKGREEQERRHQMELNTLKQQLELERQAWEAgRTRKEAwlLNREQELREEIRKGRDKEIEL 901
Cdd:pfam17380 530 YE----EERRREAEEERRKQQEMEERRRIQEQMRKATEE-RSRLEA--MEREREMMRQIVESEKARAEY 591
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
584-1075 |
1.26e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.01 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 584 KQAMLLLQRALAQQRDLTARRVKETEKALsRQLQRQREHYEATIQRhLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCT 663
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 664 ERVAQAQAQHELE--IKKLKELmsateKARREKWISektkkiKEVTVRGLEPEIQKLiARHKQEVRRLKSLHEAELLQSD 741
Cdd:COG4717 130 LYQELEALEAELAelPERLEEL-----EERLEELRE------LEEELEELEAELAEL-QEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 742 ERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQ----------------RLYSEVAEERE 805
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLllliaaallallglggSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 806 RLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQ 885
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 886 ELREEIRkgrdkeIELVIHRLEADMALAKEESEKAAESRIKRLRdKYEAELSELEQSERKLQERCSELKGQLGEAEGENL 965
Cdd:COG4717 358 ELEEELQ------LEELEQEIAALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEALDEEEL 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 966 RLQglVRQKERALEDAQAVNEQLSSERSNLAQVIRQefedrlAASEEETRQAKAELATLQARQQlELEEVHRRVKTALAR 1045
Cdd:COG4717 431 EEE--LEELEEELEELEEELEELREELAELEAELEQ------LEEDGELAELLQELEELKAELR-ELAEEWAALKLALEL 501
|
490 500 510
....*....|....*....|....*....|.
gi 767994121 1046 KEEAVSSLRTQHEAAV-KRADHLEELLEQHR 1075
Cdd:COG4717 502 LEEAREEYREERLPPVlERASEYFSRLTDGR 532
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
726-1053 |
1.28e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.98 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 726 VRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERarqrfqQHLEQEQWALQQQRQRLYSEVAEERE 805
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKAR------QAEMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 806 RLgQQAARQRaELEELRQQleesssaltrALRAEFEKGREEQerRHQMELntlKQQLELERQAWEAGRtrkeawllnrEQ 885
Cdd:pfam17380 352 RI-RQEERKR-ELERIRQE----------EIAMEISRMRELE--RLQMER---QQKNERVRQELEAAR----------KV 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 886 ELREEIRKGRDKEielvihrLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENL 965
Cdd:pfam17380 405 KILEEERQRKIQQ-------QKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 966 RLQGLVRQKERALEDAQAVNEQLSSER-------SNLAQVIRQEFEDRLAASEEETRQAKAElatLQARQQLELEEvHRR 1038
Cdd:pfam17380 478 ELEKEKRDRKRAEEQRRKILEKELEERkqamieeERKRKLLEKEMEERQKAIYEEERRREAE---EERRKQQEMEE-RRR 553
|
330
....*....|....*
gi 767994121 1039 VKTALARKEEAVSSL 1053
Cdd:pfam17380 554 IQEQMRKATEERSRL 568
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
784-1030 |
1.93e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 1.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 784 QEQWALQQQRQRLYSEVAEERERLgQQAARQRAELEELRQQLEESSSALTRALRAefekgREEQERRHQMELNTLKQQLE 863
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-AALKKEEKALLKQLAALERRIAALARRIRA-----LEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 864 LERQAWEAGRTRkeawllnREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSE 943
Cdd:COG4942 94 ELRAELEAQKEE-------LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 944 RKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIR--QEFEDRLAASEEETRQAKAEL 1021
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEelEALIARLEAEAAAAAERTPAA 246
|
....*....
gi 767994121 1022 ATLQARQQL 1030
Cdd:COG4942 247 GFAALKGKL 255
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
729-922 |
2.19e-08 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 57.87 E-value: 2.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 729 LKSLHEAELLQSDERAsQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLysevaEERErlg 808
Cdd:PRK12704 25 RKKIAEAKIKEAEEEA-KRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL-----LQKE--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 809 QQAARQRAELEELRQQLEESSSALTRaLRAEFEKGREEQERRHQmelntlKQQLELERQaweAGRTRKEAwllnrEQELR 888
Cdd:PRK12704 96 ENLDRKLELLEKREEELEKKEKELEQ-KQQELEKKEEELEELIE------EQLQELERI---SGLTAEEA-----KEILL 160
|
170 180 190
....*....|....*....|....*....|....
gi 767994121 889 EEIRKGRDKEIELVIHRLEADmalAKEESEKAAE 922
Cdd:PRK12704 161 EKVEEEARHEAAVLIKEIEEE---AKEEADKKAK 191
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
911-1076 |
2.67e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 911 ALAKEESEKAAESRIKRLRDkYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSS 990
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEE-LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 991 ERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRR------VKTALARKEEAVSSLRTQHEAAVKRA 1064
Cdd:TIGR02168 296 EISRLEQQK-QILRERLANLERQLEELEAQLEELESKLDELAEELAELeekleeLKEELESLEAELEELEAELEELESRL 374
|
170
....*....|..
gi 767994121 1065 DHLEELLEQHRR 1076
Cdd:TIGR02168 375 EELEEQLETLRS 386
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
699-1076 |
3.03e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 3.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 699 KTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgqQERERARQRF 778
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLY--QELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 779 QQhlEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQmELNTL 858
Cdd:COG4717 142 AE--LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE-ELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 859 KQQLELERQAWEagRTRKEAWLLNREQELREEIRKGR--------------------------------------DKEIE 900
Cdd:COG4717 219 QEELEELEEELE--QLENELEAAALEERLKEARLLLLiaaallallglggsllsliltiagvlflvlgllallflLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 901 LVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERA--L 978
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAalL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 979 EDAQAVNE--------------QLSSERSNLAQVIRQEFEDRLAASEEETR-QAKAELATLQARQQlELEEVHRRVKTAL 1043
Cdd:COG4717 377 AEAGVEDEeelraaleqaeeyqELKEELEELEEQLEELLGELEELLEALDEeELEEELEELEEELE-ELEEELEELREEL 455
|
410 420 430
....*....|....*....|....*....|...
gi 767994121 1044 ARKEEAVSSLRTQHEAAVKRADHlEELLEQHRR 1076
Cdd:COG4717 456 AELEAELEQLEEDGELAELLQEL-EELKAELRE 487
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
795-1073 |
8.94e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 8.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 795 RLYSEVAEERERLGQ---QAARQRAELEELRQQLEESSSALTRA--------LRAEFEKGREEQERRHQMELNTLKQQLE 863
Cdd:TIGR02169 671 SEPAELQRLRERLEGlkrELSSLQSELRRIENRLDELSQELSDAsrkigeieKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 864 LERQAWEAGRTRKEAwllnREQELREEIRKgrdkeIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSE 943
Cdd:TIGR02169 751 QEIENVKSELKELEA----RIEELEEDLHK-----LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 944 RKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELAT 1023
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-DLESRLGDLKKERDELEAQLRE 900
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 767994121 1024 LQARQQleleevhrRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1073
Cdd:TIGR02169 901 LERKIE--------ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
780-1075 |
1.22e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 780 QHLEQEQWALQQQRQRLYSEVAEERERlgqqaarqRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQM-----E 854
Cdd:PRK02224 223 ERYEEQREQARETRDEADEVLEEHEER--------REELETLEAEIEDLRETIAETEREREELAEEVRDLRERLeeleeE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 855 LNTLKQQLELERQAWEAGRTRKEAwLLNREQELREEIRKGRdkeIELVIHRLEADMALakeESEKAAESRIKRLRDKYEA 934
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREE-LEDRDEELRDRLEECR---VAAQAHNEEAESLR---EDADDLEERAEELREEAAE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 935 ELSELEQSERKLQERcselKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI------RQEFEDRLA 1008
Cdd:PRK02224 368 LESELEEAREAVEDR----REEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREaeleatLRTARERVE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 1009 ASE------------------------EETRQAKAELATLQARQQLELEEVHRRVKTA------------LARKEEAVSS 1052
Cdd:PRK02224 444 EAEalleagkcpecgqpvegsphvetiEEDRERVEELEAELEDLEEEVEEVEERLERAedlveaedrierLEERREDLEE 523
|
330 340 350
....*....|....*....|....*....|....
gi 767994121 1053 LRTQHEAAV-----------KRADHLEELLEQHR 1075
Cdd:PRK02224 524 LIAERRETIeekreraeelrERAAELEAEAEEKR 557
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
714-1073 |
2.25e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 714 EIQKLIARHKQEVRRLKSlHEAELLQSDERASQRclrqaeelreQLEREKEALGQQERERARQRFQQHLEQEQWALQQQR 793
Cdd:TIGR02169 685 GLKRELSSLQSELRRIEN-RLDELSQELSDASRK----------IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 794 QRLYSEVAEERERLgqqaARQRAELEELRQQLEEsssaLTRALRAEFEKgreeqerrhqmELNTLKQQLELERQAWEAgR 873
Cdd:TIGR02169 754 ENVKSELKELEARI----EELEEDLHKLEEALND----LEARLSHSRIP-----------EIQAELSKLEEEVSRIEA-R 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 874 TRKEAWLLNREQELREEIRKGRDKEIELVIhrleaDMALAKEESEKAAESRIKRLRDKyEAELSELEQSERKLQERCSEL 953
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRI-----DLKEQIKSIEKEIENLNGKKEEL-EEELEELEAALRDLESRLGDL 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 954 KGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEET------RQAKAELATLQAR 1027
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL-SEIEDPKGEDEEIPeeelslEDVQAELQRVEEE 966
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 767994121 1028 QQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1073
Cdd:TIGR02169 967 IR-ALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
763-1074 |
2.71e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 54.96 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 763 KEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQR--AELEELRQQLEESSSAltRALRAEF 840
Cdd:PRK04863 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERyqADLEELEERLEEQNEV--VEEADEQ 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 841 EKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAW-----LLNREQEL-----------REEIRKGRDKEIELVIH 904
Cdd:PRK04863 378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYqqavqALERAKQLcglpdltadnaEDWLEEFQAKEQEATEE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 905 RLEADMAL-----AKEESEKAAESrIKRLRDKYEAE---------LSELEqSERKLQERCSELKGQLGEAEGEnLRLQgl 970
Cdd:PRK04863 458 LLSLEQKLsvaqaAHSQFEQAYQL-VRKIAGEVSRSeawdvarelLRRLR-EQRHLAEQLQQLRMRLSELEQR-LRQQ-- 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 971 vRQKERALEDAQAVNEQLSSERSNLaqvirQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARK---- 1046
Cdd:PRK04863 533 -QRAERLLAEFCKRLGKNLDDEDEL-----EQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARApawl 606
|
330 340 350
....*....|....*....|....*....|
gi 767994121 1047 --EEAVSSLRTQHEAAVKRADHLEELLEQH 1074
Cdd:PRK04863 607 aaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
807-1075 |
3.05e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 807 LGQQAARQRAELEELRQQLEESSSALTRALRAefEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAwllnreQE 886
Cdd:COG4913 604 LGFDNRAKLAALEAELAELEEELAEAEERLEA--LEAELDALQERREALQRLAEYSWDEIDVASAEREIAEL------EA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 887 LREEIRKGRD--KEIELVIHRLEADMALAKEESEkAAESRIKRLRDKYEAELSELEQSERKLqERCSELKGQLGEAEGEN 964
Cdd:COG4913 676 ELERLDASSDdlAALEEQLEELEAELEELEEELD-ELKGEIGRLEKELEQAEEELDELQDRL-EAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 965 LRLQGLVRQKERAL-EDAQAVNEQLSSERSNLAQVIRQEFED----------RLAASEEETRQAKAELATLQARqqlELE 1033
Cdd:COG4913 754 RFAAALGDAVERELrENLEERIDALRARLNRAEEELERAMRAfnrewpaetaDLDADLESLPEYLALLDRLEED---GLP 830
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 767994121 1034 EVHRRVKTALARKEEA-----VSSLRTQHEAAVKRADHLEELLEQHR 1075
Cdd:COG4913 831 EYEERFKELLNENSIEfvadlLSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
576-1076 |
3.62e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 3.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 576 LKLEVEEKKQAMLLLQ-RALAQQRDLTARRVKETEKALSrQLQRQREHYEATIQRHLAFIDQL----------------- 637
Cdd:TIGR02169 216 LLKEKREYEGYELLKEkEALERQKEAIERQLASLEEELE-KLTEEISELEKRLEEIEQLLEELnkkikdlgeeeqlrvke 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 638 -IEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQ---HELEIKKLKELMsATEKARREKWISEKTKKIKEVTVrgLEP 713
Cdd:TIGR02169 295 kIGELEAEIASLERSIAEKERELEDAEERLAKLEAEidkLLAEIEELEREI-EEERKRRDKLTEEYAELKEELED--LRA 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 714 EIQKLIARHKQEVRRLKSLHEA-ELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQR---FQQHLEQEQWAL 789
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKlEKLKREINELKRELDRLQEELQRLSEELADL-NAAIAGIEAKineLEEEKEDKALEI 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 790 QQQRQRLySEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL---------NTLKQ 860
Cdd:TIGR02169 451 KKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVlkasiqgvhGTVAQ 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 861 QLELERQ-----------------------AWEAGRTRKEAWL-------LNREQELREEIRKGR--------------D 896
Cdd:TIGR02169 530 LGSVGERyataievaagnrlnnvvveddavAKEAIELLKRRKAgratflpLNKMRDERRDLSILSedgvigfavdlvefD 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 897 KEIE----------LVIHRLEADMALAKE-----------ESEKAAESRIKRLRDKYEAELSELEQSERkLQERCSELKG 955
Cdd:TIGR02169 610 PKYEpafkyvfgdtLVVEDIEAARRLMGKyrmvtlegelfEKSGAMTGGSRAPRGGILFSRSEPAELQR-LRERLEGLKR 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 956 QLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAELATLQARQQlELEEV 1035
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE-RLEELEEDLSSLEQEIENVKSELK-ELEAR 766
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 767994121 1036 HRRVKTALARKEEAVSSL--RTQHEAAVKRADHLEELLEQHRR 1076
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEVSR 809
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
603-1076 |
6.52e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 6.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 603 RRVKETEKALSR--QLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRcTERVAQAQAQHEL---EI 677
Cdd:PRK03918 176 RRIERLEKFIKRteNIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL-KEEIEELEKELESlegSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 678 KKLKELMSATEKARRE--KWISEKTKKIKEVT-VRGLEPEIQKLIARHKQEVRRLKSLH-EAELLQSDERASQRCLRQAE 753
Cdd:PRK03918 255 RKLEEKIRELEERIEElkKEIEELEEKVKELKeLKEKAEEYIKLSEFYEEYLDELREIEkRLSRLEEEINGIEERIKELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 754 ELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYS----------------------EVAEERERLGQQA 811
Cdd:PRK03918 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKrltgltpeklekeleelekakeEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 812 ARQRAELEELRQQLEESSSALTRAL---RAEFEKGREEQERRHQMELNTLKQQL--------ELERQAWEAGRTRKEAWL 880
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKCPvcgRELTEEHRKELLEEYTAELKRIEKELkeieekerKLRKELRELEKVLKKESE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 881 LNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA--ESRIKRLRDK------YEAELSELEQSERKLQERCSE 952
Cdd:PRK03918 495 LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIklKGEIKSLKKElekleeLKKKLAELEKKLDELEEELAE 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 953 LKGQLGE------------------AEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQV-------------IRQ 1001
Cdd:PRK03918 575 LLKELEElgfesveeleerlkelepFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETekrleelrkeleeLEK 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 1002 EF-EDRLAASEEETRQAKAELATLQARqqleLEEVHRRVKTA------LARKEEAVSSLRTQHEAAVKRADHLEELLEQH 1074
Cdd:PRK03918 655 KYsEEEYEELREEYLELSRELAGLRAE----LEELEKRREEIkktlekLKEELEEREKAKKELEKLEKALERVEELREKV 730
|
..
gi 767994121 1075 RR 1076
Cdd:PRK03918 731 KK 732
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
799-1073 |
1.01e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 799 EVAEERErlgQQAARQRAELEELRQQLEESSSALTRALRA-EFEKGREEQERRHQmelnTLKQQLELERQAWEAGRTRKE 877
Cdd:PRK02224 468 ETIEEDR---ERVEELEAELEDLEEEVEEVEERLERAEDLvEAEDRIERLEERRE----DLEELIAERRETIEEKRERAE 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 878 AwLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA-ESRIKRLrDKYEAELSELEQSERKLQERCSELKGQ 956
Cdd:PRK02224 541 E-LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL-ERIRTLLAAIADAEDEIERLREKREAL 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 957 lgeAEGENLRLQGLVRQKERALEDAQAVNEqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLeleevh 1036
Cdd:PRK02224 619 ---AELNDERRERLAEKRERKRELEAEFDE----ARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA------ 685
|
250 260 270
....*....|....*....|....*....|....*..
gi 767994121 1037 rrVKTALARKEEavssLRTQHEAAVKRADHLEELLEQ 1073
Cdd:PRK02224 686 --VENELEELEE----LRERREALENRVEALEALYDE 716
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
574-1063 |
1.27e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.87 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 574 MRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFI-------DQLIEDKKVLSE 646
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIllledqnSKLSKERKLLEE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 647 KCEAVVAELKQEDQRcTERVAQAQAQHELEIKKLKELMSATEKARREkwiSEKTKKIKEvtvrGLEPEIQKLIARHKQEV 726
Cdd:pfam01576 160 RISEFTSNLAEEEEK-AKSLSKLKNKHEAMISDLEERLKKEEKGRQE---LEKAKRKLE----GESTDLQEQIAELQAQI 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 727 RRLKslheAELLQSDERasqrcLRQAEELREQLEREKEALGQQERErarqrFQQHLEQEQWALQQQRQrlYSEVAEERER 806
Cdd:pfam01576 232 AELR----AQLAKKEEE-----LQAALARLEEETAQKNNALKKIRE-----LEAQISELQEDLESERA--ARNKAEKQRR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 807 -LGQQAARQRAELE----------ELRQQLEESSSALTRALRAE---FEKGREEQERRHQMELNTLKQQLELERQAWEAG 872
Cdd:pfam01576 296 dLGEELEALKTELEdtldttaaqqELRSKREQEVTELKKALEEEtrsHEAQLQEMRQKHTQALEELTEQLEQAKRNKANL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 873 RTRKEAwLLNREQELREEIRKgrdkeielvihrleadMALAKEESE---KAAESRIKRLRDKY-EAELSELEQSER--KL 946
Cdd:pfam01576 376 EKAKQA-LESENAELQAELRT----------------LQQAKQDSEhkrKKLEGQLQELQARLsESERQRAELAEKlsKL 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 947 QERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDR------LAASEEETRQAKAE 1020
Cdd:pfam01576 439 QSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERnslqeqLEEEEEAKRNVERQ 518
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 767994121 1021 LATLQArQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKR 1063
Cdd:pfam01576 519 LSTLQA-QLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQ 560
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
799-1074 |
1.42e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 799 EVAEERERLGQQAARQRAELEELRQQLEESssaltRALRAEF---EKGREEQERRHQMELNTLKQQ---LELERQAWEAG 872
Cdd:PRK02224 416 ELREERDELREREAELEATLRTARERVEEA-----EALLEAGkcpECGQPVEGSPHVETIEEDRERveeLEAELEDLEEE 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 873 RTRKEAwLLNREQELRE---EIRKGRDKEiELVIHRLEADMALAKEESEKAAESRIKrlRDKYEAELSELEQSERKLQER 949
Cdd:PRK02224 491 VEEVEE-RLERAEDLVEaedRIERLEERR-EDLEELIAERRETIEEKRERAEELRER--AAELEAEAEEKREAAAEAEEE 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 950 CSELKGQLGEAEGE----NLRLQGLVRQKER--ALEDAQAVNEQLSSERSNLAQVIRQEfEDRLAASEEETRQAKAEL-- 1021
Cdd:PRK02224 567 AEEAREEVAELNSKlaelKERIESLERIRTLlaAIADAEDEIERLREKREALAELNDER-RERLAEKRERKRELEAEFde 645
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 767994121 1022 -ATLQARQQLE-LEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQH 1074
Cdd:PRK02224 646 aRIEEAREDKErAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERR 700
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
770-1031 |
2.83e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.76 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 770 ERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQER 849
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 850 --RHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQELR---EEIRKGRDKEIElvihrleaDMALAKEESEKAAESR 924
Cdd:pfam12128 349 lpSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNrdiAGIKDKLAKIRE--------ARDRQLAVAEDDLQAL 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 925 IKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLvRQKERALEDAQAVNEQLSSERSNLAQVIRQEFE 1004
Cdd:pfam12128 421 ESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEAANAEVERLQSELRQARK 499
|
250 260
....*....|....*....|....*..
gi 767994121 1005 DRLAASEeetRQAKAELATLQARQQLE 1031
Cdd:pfam12128 500 RRDQASE---ALRQASRRLEERQSALD 523
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
567-987 |
3.17e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 3.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLtarrvkETEKALSRQLQRQREHYEAtIQRHLAFIDQLIEDKKVLSE 646
Cdd:COG4717 98 EELEEELEELEAELEELREELEKLEKLLQLLPLY------QELEALEAELAELPERLEE-LEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 647 KCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSA--TEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQ 724
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEleEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 725 EVRRLKSLHEAELLQSDERASQR--------CLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWAlqqqrqrl 796
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILtiagvlflVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE-------- 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 797 ysevaEERERLGQQAARQRAELEELRQQLEEsssaltraLRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRK 876
Cdd:COG4717 323 -----ELLAALGLPPDLSPEELLELLDRIEE--------LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 877 EAWLLNREQELREEIrkgrdkeiELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQ 956
Cdd:COG4717 390 ALEQAEEYQELKEEL--------EELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420 430
....*....|....*....|....*....|.
gi 767994121 957 LGEAEGENlRLQGLVRQKERALEDAQAVNEQ 987
Cdd:COG4717 462 LEQLEEDG-ELAELLQELEELKAELRELAEE 491
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
858-1048 |
6.66e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 6.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 858 LKQQLELERQAWEAGRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELS 937
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 938 --ELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFED---RLAASEE 1012
Cdd:COG4717 127 llPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDlaeELEELQQ 206
|
170 180 190
....*....|....*....|....*....|....*.
gi 767994121 1013 ETRQAKAELATLQARQQLELEEVHRRVKTALARKEE 1048
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
764-1076 |
7.60e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 7.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 764 EALGQQERERARQRFQQHlEQEQWALQQQRQRLYSE---VAEERERLGQQAARQRAELEELRQQLEESSSALTRALRaef 840
Cdd:pfam15921 259 ELLLQQHQDRIEQLISEH-EVEITGLTEKASSARSQansIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELR--- 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 841 ekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLlNREQELREEIRKgrdkeIELVIHRLEADMALAKEESeka 920
Cdd:pfam15921 335 -----EAKRMYEDKIEELEKQLVLANSELTEARTERDQFS-QESGNLDDQLQK-----LLADLHKREKELSLEKEQN--- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 921 aesriKRLRDKYEAELSELEQSERKLQERCSE-------LKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERS 993
Cdd:pfam15921 401 -----KRLWDRDTGNSITIDHLRRELDDRNMEvqrlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 994 NLAQVIRQ--------EFEDR----LAASEEETRQA----KAELATLQARQQLELEEV--------HRR--------VKT 1041
Cdd:pfam15921 476 MLRKVVEEltakkmtlESSERtvsdLTASLQEKERAieatNAEITKLRSRVDLKLQELqhlknegdHLRnvqteceaLKL 555
|
330 340 350
....*....|....*....|....*....|....*
gi 767994121 1042 ALARKEEAVSSLRTQHEaavkradHLEELLEQHRR 1076
Cdd:pfam15921 556 QMAEKDKVIEILRQQIE-------NMTQLVGQHGR 583
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
593-1029 |
1.17e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.57 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 593 ALAQQRDLTARRVKETeKALSRQLQRQREHYEATIQRHLAFidqliedkkVLSEKCEAVVAELKQEDQRCTERVAQAQA- 671
Cdd:COG3096 789 ELRAERDELAEQYAKA-SFDVQKLQRLHQAFSQFVGGHLAV---------AFAPDPEAELAALRQRRSELERELAQHRAq 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 672 --QHELEIKKLKELMSAtekarrekwisektkkikevtVRGLEPEIQKLIARHKQEvrRLKSLHE-AELLQSDERASQRC 748
Cdd:COG3096 859 eqQLRQQLDQLKEQLQL---------------------LNKLLPQANLLADETLAD--RLEELREeLDAAQEAQAFIQQH 915
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 749 LRQAEELREQLEREKEALGQQERerarqrFQQHLEQEQWALQQQRQRLY--SEVAEERERLGQQAArqraeleelrQQLE 826
Cdd:COG3096 916 GKALAQLEPLVAVLQSDPEQFEQ------LQADYLQAKEQQRRLKQQIFalSEVVQRRPHFSYEDA----------VGLL 979
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 827 ESSSALTRALRAEFEKGrEEQERRHQMELNTLKQQLELERQAWEAGRTRKEAwllnREQELREEIRkgrdkeielvihRL 906
Cdd:COG3096 980 GENSDLNEKLRARLEQA-EEARREAREQLRQAQAQYSQYNQVLASLKSSRDA----KQQTLQELEQ------------EL 1042
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 907 EADMALAKEESEKAAESRikrlRDKYEAELSELEQserklqeRCSELKGQLGEAEGENLRLQGLVRQKERaleDAQAVNE 986
Cdd:COG3096 1043 EELGVQADAEAEERARIR----RDELHEELSQNRS-------RRSQLEKQLTRCEAEMDSLQKRLRKAER---DYKQERE 1108
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 767994121 987 QLSSERSNLAQVIRqefedRLAASEEETRQAKAELATLQARQQ 1029
Cdd:COG3096 1109 QVVQAKAGWCAVLR-----LARDNDVERRLHRRELAYLSADEL 1146
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
880-1076 |
1.29e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 880 LLNREQELREEIRKGRDKEIELV--IHRLEADMALAKEEsEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQL 957
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLkqLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 958 GEAE--GENLRLQGLVRQKE-RALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAELATL---QARQQLE 1031
Cdd:COG4942 111 RALYrlGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLA-ELAALRAELEAERAELEALlaeLEEERAA 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 767994121 1032 LEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1076
Cdd:COG4942 190 LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
576-1034 |
1.31e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 576 LKLEVEEKKQAMLLLQRALAQQRDLTARRvkeTEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAE- 654
Cdd:TIGR00618 403 DILQREQATIDTRTSAFRDLQGQLAHAKK---QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKe 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 655 --LKQEDQRCTERVAQAQAQHELEiKKLKELMSATEKARREKWISEKTKKI---KEVTVRGLEPEIQKLIARHKQEVRRL 729
Cdd:TIGR00618 480 qiHLQETRKKAVVLARLLELQEEP-CPLCGSCIHPNPARQDIDNPGPLTRRmqrGEQTYAQLETSEEDVYHQLTSERKQR 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 730 KSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQ-----QERERARQRFQQHLEQEQWALQQQRQRLYSEVAEER 804
Cdd:TIGR00618 559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdltekLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCS 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 805 ERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTR----KEAWL 880
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELethiEEYDR 718
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 881 LNREQELREEIRK----GRDKEIELVIHRLEADMALAKEESEKAAESRIKRL--RDKYEAELSELEQSERKLQERCSELK 954
Cdd:TIGR00618 719 EFNEIENASSSLGsdlaAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaALQTGAELSHLAAEIQFFNRLREEDT 798
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 955 GQLGEAEGENLR-----LQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDrlaaseEETRQAKAELATLQARQQ 1029
Cdd:TIGR00618 799 HLLKTLEAEIGQeipsdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY------EECSKQLAQLTQEQAKII 872
|
....*
gi 767994121 1030 LELEE 1034
Cdd:TIGR00618 873 QLSDK 877
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
819-1049 |
1.46e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 819 EELRQQLEESS--SALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQELREEIRKGRD 896
Cdd:pfam02463 152 PERRLEIEEEAagSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 897 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKER 976
Cdd:pfam02463 232 LKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994121 977 ALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEA 1049
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
579-1076 |
1.61e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 579 EVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQ---LQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAAdaaVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 656 KQEDQRC---TERVAQAQAQHELEIKKLKElmsatEKARREKWISEKTKKIKEVTVRG--------------LEPEIQKL 718
Cdd:pfam12128 357 ENLEERLkalTGKHQDVTAKYNRRRSKIKE-----QNNRDIAGIKDKLAKIREARDRQlavaeddlqaleseLREQLEAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 719 IARHKQEVRRLKS-LHEAELLQSDERASQRCLRQAEELREQLEREKEALG---------QQERERARQRFQQ-------- 780
Cdd:pfam12128 432 KLEFNEEEYRLKSrLGELKLRLNQATATPELLLQLENFDERIERAREEQEaanaeverlQSELRQARKRRDQasealrqa 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 781 --HLEQEQWALQQQRQRLY-----------SEVAEERERLGQ-------------------------------------- 809
Cdd:pfam12128 512 srRLEERQSALDELELQLFpqagtllhflrKEAPDWEQSIGKvispellhrtdldpevwdgsvggelnlygvkldlkrid 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 810 ----------------------QAARQRA-----ELEELRQQLEESSSALTRALRAeFEKGREEQER---RHQMELNTLK 859
Cdd:pfam12128 592 vpewaaseeelrerldkaeealQSAREKQaaaeeQLVQANGELEKASREETFARTA-LKNARLDLRRlfdEKQSEKDKKN 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 860 QQLELERQAWEAGRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALakEESEKAAESRIK----RLRDKYEAE 935
Cdd:pfam12128 671 KALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVV--EGALDAQLALLKaaiaARRSGAKAE 748
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 936 LSELEqserklQERCSELKGqLGEAEGENLRLQGLVRQKERALEDA-----------QAVNEQLSSERSNLAQVIRQ--- 1001
Cdd:pfam12128 749 LKALE------TWYKRDLAS-LGVDPDVIAKLKREIRTLERKIERIavrrqevlryfDWYQETWLQRRPRLATQLSNier 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 1002 ---EFEDRLAASEEETRQAKAELAT---LQARQQLELEEVHRRVK---TALARKEEAVSSLRTQHEAAvKRADHLEELLE 1072
Cdd:pfam12128 822 aisELQQQLARLIADTKLRRAKLEMerkASEKQQVRLSENLRGLRcemSKLATLKEDANSEQAQGSIG-ERLAQLEDLKL 900
|
....
gi 767994121 1073 QHRR 1076
Cdd:pfam12128 901 KRDY 904
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
568-949 |
1.71e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 568 EVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEK 647
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 648 CEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVR 727
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 728 RLKSLHEAELLQSDERASQRclrQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERErl 807
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKE---EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE-- 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 808 gqqaarQRAELEELRQQLEESssaltRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQEL 887
Cdd:pfam02463 868 ------LLQELLLKEEELEEQ-----KLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE 936
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994121 888 REEIRKGRDKEIE------LVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 949
Cdd:pfam02463 937 PEELLLEEADEKEkeennkEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
576-1035 |
1.80e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 576 LKLEVEEKKQamLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:TIGR00618 158 LKAKSKEKKE--LLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 656 KQEDQrctervAQAQAQHELEikklkelmSATEKARREKWISEKTKKIKEVtvRGLEPEIQKLIARHKQEVRRLKSLHEA 735
Cdd:TIGR00618 236 QQTQQ------SHAYLTQKRE--------AQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAPLAAHI 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 736 ELLQSDERASQRCLRQaeelreqlerekeaLGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQR 815
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTE--------------LQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAT 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 816 AELEELRQQLEESSSALTRALRAEFEKGRE-------EQERRHQMELNTLKQQLELERQAWEAGRTRKEA---WLLNREQ 885
Cdd:TIGR00618 366 SIREISCQQHTLTQHIHTLQQQKTTLTQKLqslckelDILQREQATIDTRTSAFRDLQGQLAHAKKQQELqqrYAELCAA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 886 ELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKG---QLGEAEG 962
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNParqDIDNPGP 525
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994121 963 ENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAqvirqefedRLAASEEETRQAKAELATLQARQQLELEEV 1035
Cdd:TIGR00618 526 LTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRA---------SLKEQMQEIQQSFSILTQCDNRSKEDIPNL 589
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
573-1073 |
2.18e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 573 VMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQR-QREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR00606 441 TIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKL 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 652 VAELKQEDQRCTER-----VAQAQAQHELEIKKLK-----ELMSAT----EKARREKWISEKTKKIK--EVTVRGLEPEI 715
Cdd:TIGR00606 521 DQEMEQLNHHTTTRtqmemLTKDKMDKDEQIRKIKsrhsdELTSLLgyfpNKKQLEDWLHSKSKEINqtRDRLAKLNKEL 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 716 QKLIARHKQEVRRLKSLHEAELLQSDErasqrclrqaeelreqlerEKEALGQQERERARQRFQQHLEQ--EQWALQQQR 793
Cdd:TIGR00606 601 ASLEQNKNHINNELESKEEQLSSYEDK-------------------LFDVCGSQDEESDLERLKEEIEKssKQRAMLAGA 661
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 794 QRLYSEVAEERER-------LGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELER 866
Cdd:TIGR00606 662 TAVYSQFITQLTDenqsccpVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 867 QAWEAGRTRKEAWLLNRE-QELREEIRKgRDKEIELVIHRLEA------DMALAKEESEKAAESRIKRLRDKYEAELSEL 939
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDiQRLKNDIEE-QETLLGTIMPEEESakvcltDVTIMERFQMELKDVERKIAQQAAKLQGSDL 820
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 940 EQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI--RQEFEDRLAASEEETRQA 1017
Cdd:TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLqrRQQFEEQLVELSTEVQSL 900
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 767994121 1018 KAELAtlQARQQLELEEVHRrvKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1073
Cdd:TIGR00606 901 IREIK--DAKEQDSPLETFL--EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
604-1041 |
2.19e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 604 RVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKV----LSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKK 679
Cdd:pfam15921 239 RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVeitgLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 680 LKELMSATEKARREKwisEKTKKIKEVTVRGLEPEIQkLIARHKQEVRRLKSLHEAELLQSDERAsQRCLRQAEELREQL 759
Cdd:pfam15921 319 LSDLESTVSQLRSEL---REAKRMYEDKIEELEKQLV-LANSELTEARTERDQFSQESGNLDDQL-QKLLADLHKREKEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 760 EREKEALGQ-QERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSaLTRALRA 838
Cdd:pfam15921 394 SLEKEQNKRlWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSS-LTAQLES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 839 EFEKGRE------------EQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQELR------EEIRK------- 893
Cdd:pfam15921 473 TKEMLRKvveeltakkmtlESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegDHLRNvqtecea 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 894 ------GRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE-----AELSELEQSERKLQERCSELKGQLGEAEG 962
Cdd:pfam15921 553 lklqmaEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEindrrLELQEFKILKDKKDAKIRELEARVSDLEL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 963 ENLRLQGLVRQKERALEDAQAVNEQLSSE----RSNLA------QVIRQEFEDRLAASEEETRQAKAELATLQArqqlEL 1032
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEvktsRNELNslsedyEVLKRNFRNKSEEMETTTNKLKMQLKSAQS----EL 708
|
....*....
gi 767994121 1033 EEVHRRVKT 1041
Cdd:pfam15921 709 EQTRNTLKS 717
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
769-954 |
2.40e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.47 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 769 QERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALT--RALRAEFEKGREE 846
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNklNTAAAKIKSKIEQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 847 QERRHQM-----ELNTLKQQLELERQAWEAGRTRkeawLLNREQELrEEIRKGRDKEIELVIHRLEADMAL--------- 912
Cdd:PHA02562 274 FQKVIKMyekggVCPTCTQQISEGPDRITKIKDK----LKELQHSL-EKLDTAIDELEEIMDEFNEQSKKLlelknkist 348
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 767994121 913 ------AKEESEKAAESRIKRLRDK---YEAELSELEQSERKLQERCSELK 954
Cdd:PHA02562 349 nkqsliTLVDKAKKVKAAIEELQAEfvdNAEELAKLQDELDKIVKTKSELV 399
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
572-863 |
2.68e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 572 SVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSE---KC 648
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldEL 808
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 649 EAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRGLEPEIQ---KLIARHKQE 725
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED--IESLAAEIEELEELIEELESEleaLLNERASLE 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 726 VRRLKSLHEAELLQSDERASQRCLRQAeelreqlerekealgQQERERARQRFQQHLEQEQwALQQQRQRLYSEVAEERE 805
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSEL---------------RRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYS 950
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994121 806 RLGQQAARQRAELEELRQQLEESSSALTRALRA----------EFEkgrEEQERR----HQME-LNTLKQQLE 863
Cdd:TIGR02168 951 LTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaaieEYE---ELKERYdfltAQKEdLTEAKETLE 1020
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
652-1069 |
3.22e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 652 VAELKQEDQRCT---ERVAQAQAQHELEIKKL--KELMSATEKARREKWISEKTKKIKEVTvrGLEPEIQKLIARHKQEV 726
Cdd:TIGR00606 669 ITQLTDENQSCCpvcQRVFQTEAELQEFISDLqsKLRLAPDKLKSTESELKKKEKRRDEML--GLAPGRQSIIDLKEKEI 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 727 RRLKslheaELLQSDERASQRclrqaeelreqlerEKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERER 806
Cdd:TIGR00606 747 PELR-----NKLQKVNRDIQR--------------LKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERK 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 807 LGQQAARQRA-----ELEELRQQLEESSSALTRA-----LRAEFEKGREEQERRHQMELNTLK-QQLELERQAWEAGRTR 875
Cdd:TIGR00606 808 IAQQAAKLQGsdldrTVQQVNQEKQEKQHELDTVvskieLNRKLIQDQQEQIQHLKSKTNELKsEKLQIGTNLQRRQQFE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 876 KEAWLLNRE-QELREEIRKGRDKEIELV-----IHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 949
Cdd:TIGR00606 888 EQLVELSTEvQSLIREIKDAKEQDSPLEtflekDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG 967
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 950 CSE-LKGQLGEAEGENLRLQGLVRQKERALED----AQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATL 1024
Cdd:TIGR00606 968 KDDyLKQKETELNTVNAQLEECEKHQEKINEDmrlmRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 767994121 1025 QARQQleleevhrrvKTALARKEEAVSSLRTQHEAAVKRADHLEE 1069
Cdd:TIGR00606 1048 QVLQM----------KQEHQKLEENIDLIKRNHVLALGRQKGYEK 1082
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
575-1076 |
3.34e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQRehyeatiqrhlafidqliedkkvlsEKCEAVVAE 654
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAEL-------------------------ERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 655 LKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKW--ISEKTKKIkEVTVRGLEPEIQKLIARHKQEVRRLKSL 732
Cdd:COG4913 321 LREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRarLEALLAAL-GLPLPASAEEFAALRAEAAALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 733 HEAelLQSDERASQRCLRQAEELREQLEREKEALGQ------QERERARQRFQQHL------------------EQEQW- 787
Cdd:COG4913 400 LEA--LEEALAEAEAALRDLRRELRELEAEIASLERrksnipARLLALRDALAEALgldeaelpfvgelievrpEEERWr 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 788 -----ALQQQRQRL------YSEVAE--ERERLGQ------------QAARQRAELEELRQQLEESSSALTRALRAEFEK 842
Cdd:COG4913 478 gaierVLGGFALTLlvppehYAAALRwvNRLHLRGrlvyervrtglpDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGR 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 843 GR-------EEQERRHQMELnTLKQQLELERQAWEAGRTRK--EAWLL---NREQ--ELREEIRkgrdkEIELVIHRLEA 908
Cdd:COG4913 558 RFdyvcvdsPEELRRHPRAI-TRAGQVKGNGTRHEKDDRRRirSRYVLgfdNRAKlaALEAELA-----ELEEELAEAEE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 909 DMALAKEESEkaaesRIKRLRDKYE--AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNE 986
Cdd:COG4913 632 RLEALEAELD-----ALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 987 QLssersNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLE----LEEVHRRVKTALARKeEAVSSLRTQHEAAVK 1062
Cdd:COG4913 707 EL-----DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralLEERFAAALGDAVER-ELRENLEERIDALRA 780
|
570
....*....|....
gi 767994121 1063 RADHLEELLEQHRR 1076
Cdd:COG4913 781 RLNRAEEELERAMR 794
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
795-1078 |
7.53e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 795 RLYSEVAEERER-LGQQAARQRAELEELRQQLE--ESSSALTRALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEA 871
Cdd:PRK02224 191 QLKAQIEEKEEKdLHERLNGLESELAELDEEIEryEEQREQARETRDEADEVLEEHEERRE-ELETLEAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 872 GRTRKEawllnreqELREEIRKGRDKEIELvihRLEADMALAKEESEKAAESRIkrlrdkyEAELSELEQSERKLQERCS 951
Cdd:PRK02224 270 TERERE--------ELAEEVRDLRERLEEL---EEERDDLLAEAGLDDADAEAV-------EARREELEDRDEELRDRLE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 952 ELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQARQQlE 1031
Cdd:PRK02224 332 ECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVE-DRREEIEELEEEIEELRERFGDAPVDLG-N 409
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 767994121 1032 LEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRRPT 1078
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
578-953 |
9.07e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 9.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALS------RQLQRQREhyeaTIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkiGEIEKEIE----QLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 652 VAELKQEDQRCTERVaqaqAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKS 731
Cdd:TIGR02169 753 IENVKSELKELEARI----EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK-----LEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 732 LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERErarqRFQQHLEQEQWALQQQRQRLySEVAEERERLgqqa 811
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE----ELEEELEELEAALRDLESRL-GDLKKERDEL---- 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 812 arqRAELEELRQQLEESSSALtralraefekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKEAwllNREQELREEI 891
Cdd:TIGR02169 895 ---EAQLRELERKIEELEAQI-------------EKKRKRLSELKAKLEALEEELSEIEDPKGEDEE---IPEEELSLED 955
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767994121 892 RKGRDKEIELVIHRLEADMALAKEESEKAAESrikrlRDKYEAELSELEQSERKLQERCSEL 953
Cdd:TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKR-----LDELKEKRAKLEEERKAILERIEEY 1012
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
634-995 |
1.16e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 634 IDQLIEDKKVLSEKceavVAELKQEDQRCTERVAQaqaqheleIKKLKELMSATEKARREKWISEKTKKIKEV--TVRGL 711
Cdd:TIGR04523 259 KDEQNKIKKQLSEK----QKELEQNNKKIKELEKQ--------LNQLKSEISDLNNQKEQDWNKELKSELKNQekKLEEI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 712 EPEI---QKLIARHKQEVRRLKSlhEAELLQSDERASQRCLRQAEELREQLEREKEALGQQ------ERERARQRFQQHL 782
Cdd:TIGR04523 327 QNQIsqnNKIISQLNEQISQLKK--ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesQINDLESKIQNQE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 783 EQEQwALQQQRQRL---YSEVAEERERLGQQAARQRAELEELrqqlEESSSALTRALRaEFEKGREEQERR---HQMELN 856
Cdd:TIGR04523 405 KLNQ-QKDEQIKKLqqeKELLEKEIERLKETIIKNNSEIKDL----TNQDSVKELIIK-NLDNTRESLETQlkvLSRSIN 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 857 TLKQQLELERQawEAGRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEAdmaLAKEESEKaaESRIKRLRDK----- 931
Cdd:TIGR04523 479 KIKQNLEQKQK--ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK---LESEKKEK--ESKISDLEDElnkdd 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 932 YEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKE---------------------RALEDAQAVNEQLSS 990
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEkekkdlikeieekekkissleKELEKAKKENEKLSS 631
|
....*
gi 767994121 991 ERSNL 995
Cdd:TIGR04523 632 IIKNI 636
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
809-1058 |
1.28e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 809 QQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRhqMELNTLKQQLELERQAWEAGRTRKEawllNREQELR 888
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMR--ARLAARKQELEEILHELESRLEEEE----ERSQQLQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 889 EEIRKGRDKEIELVIHRLEADMALAKEESEK-AAESRIKRLRDK---YEAELSELEQSERKLQERCSELKGQLGEAEGEN 964
Cdd:pfam01576 96 NEKKKMQQHIQDLEEQLDEEEAARQKLQLEKvTTEAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTSNLAEEEEKA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 965 LRLQGLVRQKERALEDAQavneqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARqqleLEEvhrrVKTALA 1044
Cdd:pfam01576 176 KSLSKLKNKHEAMISDLE--------ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQ----IAE----LRAQLA 239
|
250
....*....|....
gi 767994121 1045 RKEEAVSSLRTQHE 1058
Cdd:pfam01576 240 KKEEELQAALARLE 253
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
666-926 |
1.71e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 666 VAQAQAQHELEiKKLKELMSatEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSLheaellQSDERAS 745
Cdd:COG4942 16 AAQADAAAEAE-AELEQLQQ--EIAELEKELAALKKEEKA-----LLKQLAALERRIAALARRIRAL------EQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 746 QRCLRQAEELREQLEREKEALGQQ--ERERARQRFQQH------LEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAE 817
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEElaELLRALYRLGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 818 LEELRQQLEESSSALTRALRaefekgreeqerrhqmELNTLKQQLELERQAweagRTRKEAWLLNREQELREEIRKGRDK 897
Cdd:COG4942 162 LAALRAELEAERAELEALLA----------------ELEEERAALEALKAE----RQKLLARLEKELAELAAELAELQQE 221
|
250 260 270
....*....|....*....|....*....|.
gi 767994121 898 EIEL--VIHRLEADMALAKEESEKAAESRIK 926
Cdd:COG4942 222 AEELeaLIARLEAEAAAAAERTPAAGFAALK 252
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
906-1076 |
2.20e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 906 LEADMALAKEESEkAAESRIKRLRDKYEaeLSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAV- 984
Cdd:COG3206 180 LEEQLPELRKELE-EAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDAl 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 985 -----NEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQH 1057
Cdd:COG3206 257 pellqSPVIQQLRAQLAELEAElaELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQL 336
|
170
....*....|....*....
gi 767994121 1058 EAAVKRADHLEELLEQHRR 1076
Cdd:COG3206 337 AQLEARLAELPELEAELRR 355
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
880-1076 |
2.24e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 880 LLNREQELREEIRKGRDKEIELVIHRLeadmalakeeseKAAESRIKRLRDKyEAELSELEQSERKLQERCSELKGQLGE 959
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKEL------------KELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 960 AEGENLRLQGLVRQKErALEDAQAVNEQLSSERSNLAQVIRQEfeDRLAASEEETRQAKAELATLQARQQLELEEVHRRV 1039
Cdd:COG4717 114 LREELEKLEKLLQLLP-LYQELEALEAELAELPERLEELEERL--EELRELEEELEELEAELAELQEELEELLEQLSLAT 190
|
170 180 190
....*....|....*....|....*....|....*..
gi 767994121 1040 KTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1076
Cdd:COG4717 191 EEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
714-1073 |
2.34e-04 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 45.28 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQR 793
Cdd:COG5278 94 ELRSLTADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEIRARLLLLALALAALLLAAA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 794 QRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGR 873
Cdd:COG5278 174 ALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALALALLLAALLLAL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 874 TRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSEL 953
Cdd:COG5278 254 LAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAAAAALAALLALAL 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 954 KGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELE 1033
Cdd:COG5278 334 ATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAAAAAEAAAAAAAA 413
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 767994121 1034 EVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1073
Cdd:COG5278 414 AAASAAEALELAEALAEALALAEEEALALAAASSELAEAG 453
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
897-999 |
2.40e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.07 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 897 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKY---EAELSELE---QSERKLQERCSELKGQLGEAEGENLRLQGL 970
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFERLAELRDELaelEEELEALKarwEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110
....*....|....*....|....*....|
gi 767994121 971 VRQKERALEDAQA-VNEQLSSErsNLAQVI 999
Cdd:COG0542 494 LAELEEELAELAPlLREEVTEE--DIAEVV 521
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
790-922 |
4.87e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 43.71 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 790 QQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAW 869
Cdd:COG2268 218 QANREAEEAELEQEREIETARIAEAEAELAKKKAEERREAETARAEAEAAYEIAEANAEREVQRQLEIAEREREIELQEK 297
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 767994121 870 EAGRtrkeawllnREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAE 922
Cdd:COG2268 298 EAER---------EEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAE 341
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
768-1070 |
5.09e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 768 QQERERARQRFQQHLEQEqwalqqqrqrLYSEVAEERERLgqqaARQRAELEELRQQLEESssaltraLRAEFEKGREEQ 847
Cdd:pfam01576 37 QLCEEKNALQEQLQAETE----------LCAEAEEMRARL----AARKQELEEILHELESR-------LEEEEERSQQLQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 848 ERRHQMELNT--LKQQLELE---RQAWEAGRTRKEAWLLNREQE--LREEIRKGRDKEIELVIHRLEADMALAKEESEKA 920
Cdd:pfam01576 96 NEKKKMQQHIqdLEEQLDEEeaaRQKLQLEKVTTEAKIKKLEEDilLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 921 aeSRIKRLRDKYEAELS--------------ELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNE 986
Cdd:pfam01576 176 --KSLSKLKNKHEAMISdleerlkkeekgrqELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLE 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 987 QLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQaRQQLELEEVHRRVKTALarkEEAVSSLRTQHEAAVKRADH 1066
Cdd:pfam01576 254 EETAQKNNALKKIR-ELEAQISELQEDLESERAARNKAE-KQRRDLGEELEALKTEL---EDTLDTTAAQQELRSKREQE 328
|
....
gi 767994121 1067 LEEL 1070
Cdd:pfam01576 329 VTEL 332
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
788-1009 |
6.08e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 43.91 E-value: 6.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 788 ALQQQRQRlYSEVAEERERLGQQAARQRAELEELRQQLEESSSAltrALRA-EFEKGREEQERRHQMElnTLKQQLELER 866
Cdd:COG0497 159 EYREAYRA-WRALKKELEELRADEAERARELDLLRFQLEELEAA---ALQPgEEEELEEERRRLSNAE--KLREALQEAL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 867 QAWEAGRTRKEAWLLNREQELREEIRKgrDKEIELVIHRLEADMALAKEesekaAESRIKRLRDKYEAELSELEQSERKL 946
Cdd:COG0497 233 EALSGGEGGALDLLGQALRALERLAEY--DPSLAELAERLESALIELEE-----AASELRRYLDSLEFDPERLEEVEERL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 947 Q-----------------ERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAA 1009
Cdd:COG0497 306 AllrrlarkygvtveellAYAEELRAELAELENSDERLEELEAELAEAEAELLEAAEKLSAARKKAAKKLEKAVTAELAD 385
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
780-959 |
6.10e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 780 QHLEQEQWALQQQRQRLYSEVAEererlgqqaarQRAELEELRQQLEEsssaltraLRAEFEKGREEQeRRHQMELNTLK 859
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAE-----------LEDELAALEARLEA--------AKTELEDLEKEI-KRLELEIEEVE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 860 QQLELERQAWEAGRTRKEAWLLNREQE-LREEIRKGRDKEIELV--IHRLEADMALAKEEsEKAAESRIKRLRDKYEAEL 936
Cdd:COG1579 73 ARIKKYEEQLGNVRNNKEYEALQKEIEsLKRRISDLEDEILELMerIEELEEELAELEAE-LAELEAELEEKKAELDEEL 151
|
170 180
....*....|....*....|...
gi 767994121 937 SELEQSERKLQERCSELKGQLGE 959
Cdd:COG1579 152 AELEAELEELEAEREELAAKIPP 174
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
768-893 |
6.54e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 768 QQERERARQRFQQHLEQeQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEE-----------------SSS 830
Cdd:PRK04863 532 QQRAERLLAEFCKRLGK-NLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQlqariqrlaarapawlaAQD 610
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994121 831 ALTRaLRAEFEkgrEEQERRHQMElNTLKQQLELERQAweagrTRKEAWLLNREQELREEIRK 893
Cdd:PRK04863 611 ALAR-LREQSG---EEFEDSQDVT-EYMQQLLEREREL-----TVERDELAARKQALDEEIER 663
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
788-900 |
8.22e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 43.21 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 788 ALQQQRQRLYSEVAEERERLGQQAARQRAEL----EELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTlkqqlE 863
Cdd:pfam09731 295 EIDQLSKKLAELKKREEKHIERALEKQKEELdklaEELSARLEEVRAADEAQLRLEFEREREEIRESYEEKLRT-----E 369
|
90 100 110
....*....|....*....|....*....|....*..
gi 767994121 864 LERQAWEAGRTRKEAwLLNREQELREEIRKGRDKEIE 900
Cdd:pfam09731 370 LERQAEAHEEHLKDV-LVEQEIELQREFLQDIKEKVE 405
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
770-952 |
9.78e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 43.02 E-value: 9.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 770 ERERARQRFQQHLEQEQwalQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQE- 848
Cdd:pfam15709 351 ERKRREQEEQRRLQQEQ---LERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQQEe 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 849 -RRHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQELREEIRKGrdkeielviHRLEADMALAKEESEKAAESRIKR 927
Cdd:pfam15709 428 fRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLAEEQKRLMEMAEE---------ERLEYQRQKQEAEEKARLEAEERR 498
|
170 180
....*....|....*....|....*
gi 767994121 928 LRDKYEAELSeLEQSERKLQERCSE 952
Cdd:pfam15709 499 QKEEEAARLA-LEEAMKQAQEQARQ 522
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
780-1016 |
1.05e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 43.28 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 780 QHLEQEQWAlqqQRQRLYSEVAEE-RERLGQQAARQRAELEELRQQLEESS-SALTRALRAEFEKGREEQeRRHQMELNT 857
Cdd:NF012221 1549 KHAKQDDAA---QNALADKERAEAdRQRLEQEKQQQLAAISGSQSQLESTDqNALETNGQAQRDAILEES-RAVTKELTT 1624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 858 LKQQLE-LERQAWEAG------RTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKaaesrikrlrd 930
Cdd:NF012221 1625 LAQGLDaLDSQATYAGesgdqwRNPFAGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK----------- 1693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 931 kyeaelSE--LEQSERKLQErcSELKGQLGEAEGENLRLQGLVRQKE---------RALEDAQAVNEQLSSERSNLAQVI 999
Cdd:NF012221 1694 ------SEagVAQGEQNQAN--AEQDIDDAKADAEKRKDDALAKQNEaqqaesdanAAANDAQSRGEQDASAAENKANQA 1765
|
250
....*....|....*...
gi 767994121 1000 RQEFED-RLAASEEETRQ 1016
Cdd:NF012221 1766 QADAKGaKQDESDKPNRQ 1783
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
591-892 |
1.11e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 591 QRALAQQRDLTARRVKE------TEKALSRQLQRQREHYE--ATIQRHLAFIDQLIEDKKVLSEKCEA---VVAELKQED 659
Cdd:COG3096 298 RRQLAEEQYRLVEMAREleelsaRESDLEQDYQAASDHLNlvQTALRQQEKIERYQEDLEELTERLEEqeeVVEEAAEQL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 660 QRCTERVAQAQAQHE------------LEIKKLKEL-----MSATEKARR------------EKWISEKTKKIKEVTVRG 710
Cdd:COG3096 378 AEAEARLEAAEEEVDslksqladyqqaLDVQQTRAIqyqqaVQALEKARAlcglpdltpenaEDYLAAFRAKEQQATEEV 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 711 LEPEiQKL------IARHKQ----------EVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQER-ER 773
Cdd:COG3096 458 LELE-QKLsvadaaRRQFEKayelvckiagEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNaER 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 774 ARQRFQQH----------LEQEQWALQQQRQRLYSEVAEERErlgqQAARQRAELEELRQQLEESSS------ALTRALR 837
Cdd:COG3096 537 LLEEFCQRigqqldaaeeLEELLAELEAQLEELEEQAAEAVE----QRSELRQQLEQLRARIKELAArapawlAAQDALE 612
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 767994121 838 AEFEKGREEQERRHQMeLNTLKQQLELERQAweagrTRKEAWLLNREQELREEIR 892
Cdd:COG3096 613 RLREQSGEALADSQEV-TAAMQQLLEREREA-----TVERDELAARKQALESQIE 661
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
593-948 |
1.26e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 593 ALAQQRDLTARRVkETEKALSRQLQRQREHYEATIQRHLAFidqliedkkVLSEKCEAVVAELKQEDQRCTERVAQAQA- 671
Cdd:PRK04863 790 QLRAEREELAERY-ATLSFDVQKLQRLHQAFSRFIGSHLAV---------AFEADPEAELRQLNRRRVELERALADHESq 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 672 --QHELEIKKLKELMSATEKARREKWISEKTKKIKEVtvRGLEPEIQKL------IARHKQEVRRLKSLheAELLQSDer 743
Cdd:PRK04863 860 eqQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRV--EEIREQLDEAeeakrfVQQHGNALAQLEPI--VSVLQSD-- 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 744 asqrclrqaeelreqlerekealgQQERERARQRFQQhlEQEQWALQQQRQRLYSEVAEERERLGQQAARQR----AEL- 818
Cdd:PRK04863 934 ------------------------PEQFEQLKQDYQQ--AQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMlaknSDLn 987
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 819 EELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLelerQAWEAGRTRKEAWLLNREQELRE-EIRKGRDK 897
Cdd:PRK04863 988 EKLRQRLEQAEQERTRA---------REQLRQAQAQLAQYNQVL----ASLKSSYDAKRQMLQELKQELQDlGVPADSGA 1054
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 767994121 898 EIELVIHRLEADMALAKEESEKAAesrIKRLRDKYEAELSELEQSERKLQE 948
Cdd:PRK04863 1055 EERARARRDELHARLSANRSRRNQ---LEKQLTFCEAEMDNLTKKLRKLER 1102
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
818-1075 |
1.32e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 818 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL----NTLKQQLELERQAWEAGR---TRKEAWLLNREQELREE 890
Cdd:pfam07888 9 LEEESHGEEGGTDMLLVVPRAELLQNRLEECLQERAELlqaqEAANRQREKEKERYKRDReqwERQRRELESRVAELKEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 891 IRKGRDKEIELVIHRLEADMALAKEESEKAAESRIkrlRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGL 970
Cdd:pfam07888 89 LRQSREKHEELEEKYKELSASSEELSEEKDALLAQ---RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 971 VRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQA------RQQLELEEVHRRVKTA-- 1042
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEF-QELRNSLAQRDTQVLQLQDTITTLTQklttahRKEAENEALLEELRSLqe 244
|
250 260 270
....*....|....*....|....*....|....
gi 767994121 1043 -LARKEEAVSSLRTQHEAAVKRADHLEELLEQHR 1075
Cdd:pfam07888 245 rLNASERKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-840 |
1.83e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 567 SEVSTSVMRLKLEVEEKKQAMLLLQRA---LAQQRDLTARRVKETEKALSRQLQrQREHYEATIQRHLAFIDQLIEDKKV 643
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKElteLEAEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDE 807
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 644 LsekcEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRGLEPEIQ---KLIA 720
Cdd:TIGR02168 808 L----RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED--IESLAAEIEELEELIEELESEleaLLNE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 721 RHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQRFQQHLEQ--EQWAL--------- 789
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL-ELRLEGLEVRIDNLQERlsEEYSLtleeaeale 960
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994121 790 -------QQQRQRL--------------------YSEVAEERERLgqqaARQRAELEELRQQLEESSSALTRALRAEF 840
Cdd:TIGR02168 961 nkieddeEEARRRLkrlenkikelgpvnlaaieeYEELKERYDFL----TAQKEDLTEAKETLEEAIEEIDREARERF 1034
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
725-1032 |
1.88e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 725 EVRRLKSLHE-AELLQSDERAS--QRCLRQAEELREQLEREKEALgqqereRARQRFQQHL-------EQEQWALQQQRQ 794
Cdd:COG5022 737 EDMRDAKLDNiATRIQRAIRGRylRRRYLQALKRIKKIQVIQHGF------RLRRLVDYELkwrlfikLQPLLSLLGSRK 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 795 RLYSEVAE--------ERERLGQQAARQRAEL--EELRQQLEESSSALTRALR------AEFEKGREEQERRHQMEL--- 855
Cdd:COG5022 811 EYRSYLACiiklqktiKREKKLRETEEVEFSLkaEVLIQKFGRSLKAKKRFSLlkketiYLQSAQRVELAERQLQELkid 890
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 856 ----NTLKQQ-LELERQAWEAGRT-----RKEAWLLNREQELREEIRKGRDKEIELVIHRLEADmalaKEESEKAAESRI 925
Cdd:COG5022 891 vksiSSLKLVnLELESEIIELKKSlssdlIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLP----ELNKLHEVESKL 966
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 926 KRLRDKYEAELSELEQSERKLQERCSELKG---QLGEAEGENLRLQ---GLVRQKERALEDAQAVNEQLSSERSNLAQvi 999
Cdd:COG5022 967 KETSEEYEDLLKKSTILVREGNKANSELKNfkkELAELSKQYGALQestKQLKELPVEVAELQSASKIISSESTELSI-- 1044
|
330 340 350
....*....|....*....|....*....|...
gi 767994121 1000 RQEFEDRLAASEEETRQAKAELATLQARQQLEL 1032
Cdd:COG5022 1045 LKPLQKLKGLLLLENNQLQARYKALKLRRENSL 1077
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
887-1046 |
2.10e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 887 LREEIrKGRDKEIELVIHRLeADMA--LAKEESEKAA-ESRIKRLRdkyeAELSELEqSERklqercSELKGQLGEAEGE 963
Cdd:PRK09039 44 LSREI-SGKDSALDRLNSQI-AELAdlLSLERQGNQDlQDSVANLR----ASLSAAE-AER------SRLQALLAELAGA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 964 NLRLQGLVRQKERALEDAQAV-----------NEQLSSERSNLAQVirqefEDRLAASEEETRQAKAELATLQarqqlel 1032
Cdd:PRK09039 111 GAAAEGRAGELAQELDSEKQVsaralaqvellNQQIAALRRQLAAL-----EAALDASEKRDRESQAKIADLG------- 178
|
170
....*....|....
gi 767994121 1033 eevhRRVKTALARK 1046
Cdd:PRK09039 179 ----RRLNVALAQR 188
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
816-967 |
2.29e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 816 AELEELRQQLEESssaltralRAEFEKGREEQERrhqmelntLKQQLELERQAWEAgrtRKEAWLLNREQELREEIRKGR 895
Cdd:PRK00409 523 ASLEELERELEQK--------AEEAEALLKEAEK--------LKEELEEKKEKLQE---EEDKLLEEAEKEAQQAIKEAK 583
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767994121 896 dKEIELVIHRLEADMALAKEE-SEKAAESRIKRLRDKYEaelsELEQSERKLQERCSELKgqlgeaEGENLRL 967
Cdd:PRK00409 584 -KEADEIIKELRQLQKGGYASvKAHELIEARKRLNKANE----KKEKKKKKQKEKQEELK------VGDEVKY 645
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
768-931 |
2.36e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 768 QQERERARQRFQQHLEQEQWALQQQRQRLYSEVaeerERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQ 847
Cdd:COG2433 390 LPEEEPEAEREKEHEERELTEEEEEIRRLEEQV----ERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDR 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 848 E-RRHQMELNTLKQQLELERQAWEAGRTR----KEAWLLNREQELR--EEIRKGRDKEIElvihRLEADMALAK------ 914
Cdd:COG2433 466 EiSRLDREIERLERELEEERERIEELKRKlerlKELWKLEHSGELVpvKVVEKFTKEAIR----RLEEEYGLKEgdvvyl 541
|
170
....*....|....*..
gi 767994121 915 EESEKAAESRIKRLRDK 931
Cdd:COG2433 542 RDASGAGRSTAELLAEA 558
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
924-1073 |
2.59e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 924 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQavnEQLSSERSNlaqvirqef 1003
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE---EQLGNVRNN--------- 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 1004 edrlaaseEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1073
Cdd:COG1579 89 --------KEYEALQKEIESLKRRIS-DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
789-977 |
3.33e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 789 LQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEE--------SSSALTRALRAEFEKGREEQERRhQMELNTLKQ 860
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrqknglvDLSEEAKLLLQQLSELESQLAEA-RAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 861 QLE-LERQAWEAGRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEA--DMALAKEE---SEKAAESRIKRLRDKYEA 934
Cdd:COG3206 241 RLAaLRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNhpDVIALRAQiaaLRAQLQQEAQRILASLEA 320
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767994121 935 ELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERA 977
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
897-1065 |
3.42e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 897 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAEL----SELEQSERKLQERCSELKGQLGEAEGENLRLQglvr 972
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrerrNELQKLEKRLLQKEENLDRKLELLEKREEELE---- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 973 QKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEEtrqakaelatlqARQQLeLEEVHRRVktalarKEEAVSS 1052
Cdd:PRK12704 114 KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE------------AKEIL-LEKVEEEA------RHEAAVL 174
|
170
....*....|...
gi 767994121 1053 LRTQHEAAVKRAD 1065
Cdd:PRK12704 175 IKEIEEEAKEEAD 187
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
925-1050 |
4.83e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 925 IKRLRDKYEAELSELEQSERKLQErcselkgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFE 1004
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNELIASLEE-------LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ 576
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 767994121 1005 DRLAASEEETRQAKAELATLQARQQL-----ELEEVHRRVKTALARKEEAV 1050
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKK 627
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
768-982 |
4.89e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 40.60 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 768 QQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERlgQQAARQRAELEELRQQLEEsssaltRALRAEFEKGREEQ 847
Cdd:TIGR02794 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA--KQAEQAAKQAEEKQKQAEE------AKAKQAAEAKAKAE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 848 ERRHQMELNTLKQQLELERQAWEAGRTRKEAwllnreqELREEIRKGRDKEIELVIHRLEADMALAKeeSEKAAESRIKR 927
Cdd:TIGR02794 138 AEAERKAKEEAAKQAEEEAKAKAAAEAKKKA-------EEAKKKAEAEAKAKAEAEAKAKAEEAKAK--AEAAKAKAAAE 208
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767994121 928 LRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQ 982
Cdd:TIGR02794 209 AAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDK 263
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
652-1023 |
5.07e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 652 VAELKQEDQRCTERVAQAQAQheleIKKLKELMSATEKaRREKWISEKTKKIKEVTVRGLEPEIQKLiarhKQEVRRLks 731
Cdd:COG4913 612 LAALEAELAELEEELAEAEER----LEALEAELDALQE-RREALQRLAEYSWDEIDVASAEREIAEL----EAELERL-- 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 732 lheaellqsdeRASQRCLRQAEELReqlEREKEALGQQERERARqrfqqhLEQEQWALQQQRQRLYSEVAEERERLGQ-- 809
Cdd:COG4913 681 -----------DASSDDLAALEEQL---EELEAELEELEEELDE------LKGEIGRLEKELEQAEEELDELQDRLEAae 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 810 --QAARQRAELEELRQQLEEssSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAgrtrkEAWLLNREQEL 887
Cdd:COG4913 741 dlARLELRALLEERFAAALG--DAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPA-----ETADLDADLES 813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 888 REEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIkrlrdkyeaeLSELEQSERKLQERCSELKGQLGEAE---GEN 964
Cdd:COG4913 814 LPEYLALLDRLEEDGLPEYEERFKELLNENSIEFVADL----------LSKLRRAIREIKERIDPLNDSLKRIPfgpGRY 883
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767994121 965 LRLQGLVRQKERALE---DAQAVNEQLSSERSNLAQ---VIRQEFEDRLAASEEETRQAKAELAT 1023
Cdd:COG4913 884 LRLEARPRPDPEVREfrqELRAVTSGASLFDEELSEarfAALKRLIERLRSEEEESDRRWRARVL 948
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
611-705 |
5.40e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 611 ALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQrctERVAQAQAQHELEIKKLKELMSATEKA 690
Cdd:PRK00409 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ---QAIKEAKKEADEIIKELRQLQKGGYAS 603
|
90
....*....|....*
gi 767994121 691 RREKWISEKTKKIKE 705
Cdd:PRK00409 604 VKAHELIEARKRLNK 618
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
639-979 |
5.87e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 639 EDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKL 718
Cdd:pfam07888 62 ERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 719 IARhkqevrrlKSLHEAELLQSDERAsQRCLRQAEELREQLEREKEALGQQERE-RARQRFQQHLEQEQWALQQQRQRLY 797
Cdd:pfam07888 142 TQR--------VLERETELERMKERA-KKAGAQRKEEEAERKQLQAKLQQTEEElRSLSKEFQELRNSLAQRDTQVLQLQ 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 798 SEVAEERERLGqQAARQRAELEELRQQLE------ESSSALTRALRAEFEKGREEQERRH------QMELNTLKQQLELE 865
Cdd:pfam07888 213 DTITTLTQKLT-TAHRKEAENEALLEELRslqerlNASERKVEGLGEELSSMAAQRDRTQaelhqaRLQAAQLTLQLADA 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 866 RQAWEAGRTRkeaWLLNReQELREEIRKGRDKEIELVIHRLEADMALAKEESEK-AAESRIKRLRDKYEAELSEleqSER 944
Cdd:pfam07888 292 SLALREGRAR---WAQER-ETLQQSAEADKDRIEKLSAELQRLEERLQEERMEReKLEVELGREKDCNRVQLSE---SRR 364
|
330 340 350
....*....|....*....|....*....|....*...
gi 767994121 945 KLQERCSELKGQLGEAEGENLRLQGL---VRQKERALE 979
Cdd:pfam07888 365 ELQELKASLRVAQKEKEQLQAEKQELleyIRQLEQRLE 402
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
799-901 |
6.40e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 39.87 E-value: 6.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 799 EVAEERERlGQQAARQRAELEELRQQLEESssaltralraefekgREEQERRHQMELNTLKQQLELERQAWEAgrtRKEA 878
Cdd:cd16269 199 EIEAERAK-AEAAEQERKLLEEQQRELEQK---------------LEDQERSYEEHLRQLKEKMEEERENLLK---EQER 259
|
90 100
....*....|....*....|...
gi 767994121 879 WLLNREQELREEIRKGRDKEIEL 901
Cdd:cd16269 260 ALESKLKEQEALLEEGFKEQAEL 282
|
|
| DUF1978 |
pfam09321 |
Domain of unknown function (DUF1978); Members of this family are found in various hypothetical ... |
773-968 |
6.71e-03 |
|
Domain of unknown function (DUF1978); Members of this family are found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified.
Pssm-ID: 312723 [Multi-domain] Cd Length: 244 Bit Score: 39.52 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 773 RARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQ-RAELEELRQQLEessSALTRALRAEFEKGREEQERRH 851
Cdd:pfam09321 51 PCRDALSEISRHELWEKKAHLKHLESLYTQARDRFEKQSSKKnQKELEEAEQEYL---SSWEDVKDQEIERVQERLQALQ 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 852 QMELNTLKQQLELERQAWEAGRTRKEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAEsrikrlrdk 931
Cdd:pfam09321 128 ALYPEVSVSEEETEGQETVTPTVDLETALGRIEESYRECVRDQEDYWKEEESKEVEMSAEFREEGGKKKSE--------- 198
|
170 180 190
....*....|....*....|....*....|....*..
gi 767994121 932 yeaelsELEQSERKLQERCSELKGQLGEAEGENLRLQ 968
Cdd:pfam09321 199 ------EFQEQLGSLERFLKEHSEELEVLEKHILKHE 229
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
770-957 |
6.96e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 40.05 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 770 ERERARQRFQQhLEQEQWALQQQRQR---LYSEVAEERERLgqqaARQRAELEELRQQLEESSSALTRALRAEFEKGREE 846
Cdd:pfam15742 84 EWKHCQQKIRE-LELEVLKQAQSIKSqnsLQEKLAQEKSRV----ADAEEKILELQQKLEHAHKVCLTDTCILEKKQLEE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 847 QERRHQMELNTLKQQLELERQaweagrtrKEAWLLNREQELREEIRKGRDKEIELVI------HRLEADMALAKE-ESEK 919
Cdd:pfam15742 159 RIKEASENEAKLKQQYQEEQQ--------KRKLLDQNVNELQQQVRSLQDKEAQLEMtnsqqqLRIQQQEAQLKQlENEK 230
|
170 180 190
....*....|....*....|....*....|....*...
gi 767994121 920 AAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQL 957
Cdd:pfam15742 231 RKSDEHLKSNQELSEKLSSLQQEKEALQEELQQVLKQL 268
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
585-988 |
7.84e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 40.34 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 585 QAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTE 664
Cdd:COG4995 44 LALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAALALALAAAALAALALLAALLALAAAAALLA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 665 RVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERA 744
Cdd:COG4995 124 LLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAAAAAALALLLA 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 745 SQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQ 824
Cdd:COG4995 204 LLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAALAAAAAAAALA 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 825 LEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEAWLLNREQELREEIRKGRDKEIELVIH 904
Cdd:COG4995 284 ALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAALALAAALALAL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 905 RLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKER----ALED 980
Cdd:COG4995 364 LAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALLALieyiILPD 443
|
....*...
gi 767994121 981 AQAVNEQL 988
Cdd:COG4995 444 RLYAFVQL 451
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
801-1082 |
9.61e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 801 AEERERLGQQAARQRAELEELRQQLEESSSALTralrAEFEKGREEQERRhqmelnTLKQQLELERQAWEAGRTRKEAWL 880
Cdd:PTZ00121 1060 AEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEA----TEEAFGKAEEAKK------TETGKAEEARKAEEAKKKAEDARK 1129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 881 LN---REQELR--EEIRKGRDKEIELVIHRLE----ADMALAKEESEKAAESRiKRLRDKYEAELSELEQSERKLQERCS 951
Cdd:PTZ00121 1130 AEearKAEDARkaEEARKAEDAKRVEIARKAEdarkAEEARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEAARKA 1208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 952 ELKGQLGEA-EGENLRLQGLVRQKERALEDAQavnEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAElatlQARQQL 1030
Cdd:PTZ00121 1209 EEERKAEEArKAEDAKKAEAVKKAEEAKKDAE---EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE----EARKAD 1281
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 767994121 1031 ELEEVHRRVKTALARKEEAVsslrtqheaavKRADHLEELLEQHRRPTPSTK 1082
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEEK-----------KKADEAKKKAEEAKKADEAKK 1322
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
900-1011 |
9.73e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 39.70 E-value: 9.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994121 900 ELVIHRLEADMALA-KEESEKAAESRIKRLRDKyeaelSELEQSERKLQERCSELKGQLGEAegENLRLQGLVRQKERAL 978
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG-----EELDDLQKRLQTECEDLRSRVSEA--EALLLHDASGGEGGGA 100
|
90 100 110
....*....|....*....|....*....|...
gi 767994121 979 EDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE 1011
Cdd:PHA03252 101 TNGGEVNVDGGADRTWLAQSPERPADGGPSGER 133
|
|
| |
