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Conserved domains on  [gi|768001527|ref|XP_011526133|]
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zinc finger RNA-binding protein 2 isoform X1 [Homo sapiens]

Protein Classification

ZnF_U1 and DZF domain-containing protein( domain architecture ID 13915240)

ZnF_U1 and DZF domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DZF smart00572
domain in DSRM or ZnF_C2H2 domain containing proteins;
652-905 3.29e-131

domain in DSRM or ZnF_C2H2 domain containing proteins;


:

Pssm-ID: 128842  Cd Length: 246  Bit Score: 394.43  E-value: 3.29e-131
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   652 VLKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTEDEyevssdpeANIVISSCEEPRMQVT 731
Cdd:smart00572   1 TLKGVMRVGSFAKGTLLKGDNVAELVLLCKEKPTSELVARLARKLPEQLKAVTEDE--------ALIIVTSTKEPTMEVG 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   732 ISVTSPLMREDPSTDPEGVEEPQADAGDVLSPKKCLESLAALRHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPA 811
Cdd:smart00572  73 ILITSPLARVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQPLSG 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   812 WAMELLVEKAVSSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFR 891
Cdd:smart00572 153 WPLELLVEKAIGSARQPLGLGDAFRRVFECLASGILLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAFG 232
                          250
                   ....*....|....
gi 768001527   892 QTHKVLGMDLLPPR 905
Cdd:smart00572 233 QIHKILGMDPLPSM 246
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
271-300 2.79e-07

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 47.63  E-value: 2.79e-07
                           10        20        30
                   ....*....|....*....|....*....|
gi 768001527   271 HYCDICKISCAGPQTYREHLGGQKHRKKEA 300
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
467-498 2.06e-05

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 42.24  E-value: 2.06e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 768001527   467 RFHCKLCECSFNDLNAKDLHVRGRRHRLQYRK 498
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
318-350 5.25e-05

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 41.08  E-value: 5.25e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768001527   318 QLHCDLCAVSCTGADAYAAHIRGSKHQKVFKLH 350
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PHA02732 super family cl28620
hypothetical protein; Provisional
6-211 2.08e-03

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA02732:

Pssm-ID: 165099 [Multi-domain]  Cd Length: 1467  Bit Score: 42.05  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527    6 YFDFAQGGGPQYSAQPPTLPLPTVGASYTAQPTPG--------MDPAVNPAFPPAAPAG---YGGYQPHSGQDFA----Y 70
Cdd:PHA02732 1060 YFAASQGPSPFTFVSPSYIFLNSWASSYVAPGFLGspyalpyfMNQTSALVGNTALPKGlnvFSGYMFGAGTVASaflyM 1139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   71 GSRPQEPVpTATTMATYqdsYSYGQSAAARSYEDRPyfqSAALQSgrmtaaDSGQPGTQeACGQPSPHGSHSHaqppqQA 150
Cdd:PHA02732 1140 NSTPQSPV-LALLLAPY---ISYKFNALSLGFSITA---DAAIFS------LFGIPAPQ-LLSSYIPTGSVLY-----QD 1200
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768001527  151 PIVESGQPASTLSSGYTYPTATGVQPESSASI-----VTSYPPPSYNPTCTAYTAPSYPN-----YDASVY 211
Cdd:PHA02732 1201 PIFTYIPPGIIGMSGTNTFTFKAAQLQLSAASsppaaTTPTPPPSSSSSSSAQSISTSPGqiqivLNGSTT 1271
ARGLU super family cl38471
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is ...
516-549 3.37e-03

Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is required for the oestrogen-dependent expression of ESR1 target genes. It functions in cooperation with MED1. The family of proteins is found in eukaryotes.


The actual alignment was detected with superfamily member pfam15346:

Pssm-ID: 405931 [Multi-domain]  Cd Length: 151  Bit Score: 38.88  E-value: 3.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 768001527  516 KVLEERMRK----QRHLAEERL---EQLRRWHAERRRLEEE 549
Cdd:pfam15346  85 RILEENNRKieeaQRKEAEERLamlEEQRRMKEERQRREKE 125
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
356-457 8.19e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 8.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527 356 PIPTLEPALATESPPGAEAKPTSPTGPSVCASSRPALAKRPVASKALCEGPPEPQAAGCRPqwgkPAQPKLEGPGAPTQG 435
Cdd:PRK12323 404 AAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP----AAAGPRPVAAAAAAA 479
                         90       100
                 ....*....|....*....|..
gi 768001527 436 GSKEAPAGCSDAQPVGPEYVEE 457
Cdd:PRK12323 480 PARAAPAAAPAPADDDPPPWEE 501
 
Name Accession Description Interval E-value
DZF smart00572
domain in DSRM or ZnF_C2H2 domain containing proteins;
652-905 3.29e-131

domain in DSRM or ZnF_C2H2 domain containing proteins;


Pssm-ID: 128842  Cd Length: 246  Bit Score: 394.43  E-value: 3.29e-131
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   652 VLKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTEDEyevssdpeANIVISSCEEPRMQVT 731
Cdd:smart00572   1 TLKGVMRVGSFAKGTLLKGDNVAELVLLCKEKPTSELVARLARKLPEQLKAVTEDE--------ALIIVTSTKEPTMEVG 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   732 ISVTSPLMREDPSTDPEGVEEPQADAGDVLSPKKCLESLAALRHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPA 811
Cdd:smart00572  73 ILITSPLARVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQPLSG 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   812 WAMELLVEKAVSSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFR 891
Cdd:smart00572 153 WPLELLVEKAIGSARQPLGLGDAFRRVFECLASGILLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAFG 232
                          250
                   ....*....|....
gi 768001527   892 QTHKVLGMDLLPPR 905
Cdd:smart00572 233 QIHKILGMDPLPSM 246
DZF pfam07528
DZF domain; The function of this domain is unknown. It is often found associated with ...
658-903 4.71e-67

DZF domain; The function of this domain is unknown. It is often found associated with pfam00098 or pfam00035. This domain has been predicted to belong to the nucleotidyltransferase superfamily.


Pssm-ID: 284860  Cd Length: 248  Bit Score: 224.37  E-value: 4.71e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527  658 RVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTEDEyeVSSDPEANIVISSCEEPRMQVTISVTSP 737
Cdd:pfam07528   1 QVGSFKKGTLLKGSNVADVVVILKTLPTTELVDALAKKVEEDLKTSMKTE--ILQSVEALIVIKNTKEPPLELGFHITSP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527  738 LMREDPSTDPEGVEEPQADAGDVLSPKKCLESLAALRHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPAWAMELL 817
Cdd:pfam07528  79 VAKVRMLIATLPENLRKLEPEDHLDRKKMQSHLASIRHTRWFEENAHHLKSIKVLIRVLKDLCRRFDTFGPLSGWPLDLL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527  818 VEKAV--SSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFRQTHK 895
Cdd:pfam07528 159 AHKAImnNPSRQALPAGEAFRRVFELLASGIFLPGSAGITDPCEKGHTRVHTHLTLQQQDDCCMTAQTLLRVLAHGGYKH 238

                  ....*...
gi 768001527  896 VLGMDLLP 903
Cdd:pfam07528 239 ILGMDGNT 246
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
271-300 2.79e-07

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 47.63  E-value: 2.79e-07
                           10        20        30
                   ....*....|....*....|....*....|
gi 768001527   271 HYCDICKISCAGPQTYREHLGGQKHRKKEA 300
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
467-498 2.06e-05

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 42.24  E-value: 2.06e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 768001527   467 RFHCKLCECSFNDLNAKDLHVRGRRHRLQYRK 498
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
318-350 5.25e-05

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 41.08  E-value: 5.25e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768001527   318 QLHCDLCAVSCTGADAYAAHIRGSKHQKVFKLH 350
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
272-295 1.11e-04

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 39.79  E-value: 1.11e-04
                          10        20
                  ....*....|....*....|....
gi 768001527  272 YCDICKISCAGPQTYREHLGGQKH 295
Cdd:pfam12874   2 YCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
319-343 1.09e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 37.09  E-value: 1.09e-03
                          10        20
                  ....*....|....*....|....*
gi 768001527  319 LHCDLCAVSCTGADAYAAHIRGSKH 343
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
468-492 1.49e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 36.71  E-value: 1.49e-03
                          10        20
                  ....*....|....*....|....*
gi 768001527  468 FHCKLCECSFNDLNAKDLHVRGRRH 492
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
PHA02732 PHA02732
hypothetical protein; Provisional
6-211 2.08e-03

hypothetical protein; Provisional


Pssm-ID: 165099 [Multi-domain]  Cd Length: 1467  Bit Score: 42.05  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527    6 YFDFAQGGGPQYSAQPPTLPLPTVGASYTAQPTPG--------MDPAVNPAFPPAAPAG---YGGYQPHSGQDFA----Y 70
Cdd:PHA02732 1060 YFAASQGPSPFTFVSPSYIFLNSWASSYVAPGFLGspyalpyfMNQTSALVGNTALPKGlnvFSGYMFGAGTVASaflyM 1139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   71 GSRPQEPVpTATTMATYqdsYSYGQSAAARSYEDRPyfqSAALQSgrmtaaDSGQPGTQeACGQPSPHGSHSHaqppqQA 150
Cdd:PHA02732 1140 NSTPQSPV-LALLLAPY---ISYKFNALSLGFSITA---DAAIFS------LFGIPAPQ-LLSSYIPTGSVLY-----QD 1200
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768001527  151 PIVESGQPASTLSSGYTYPTATGVQPESSASI-----VTSYPPPSYNPTCTAYTAPSYPN-----YDASVY 211
Cdd:PHA02732 1201 PIFTYIPPGIIGMSGTNTFTFKAAQLQLSAASsppaaTTPTPPPSSSSSSSAQSISTSPGqiqivLNGSTT 1271
ARGLU pfam15346
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is ...
516-549 3.37e-03

Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is required for the oestrogen-dependent expression of ESR1 target genes. It functions in cooperation with MED1. The family of proteins is found in eukaryotes.


Pssm-ID: 405931 [Multi-domain]  Cd Length: 151  Bit Score: 38.88  E-value: 3.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 768001527  516 KVLEERMRK----QRHLAEERL---EQLRRWHAERRRLEEE 549
Cdd:pfam15346  85 RILEENNRKieeaQRKEAEERLamlEEQRRMKEERQRREKE 125
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
356-457 8.19e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 8.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527 356 PIPTLEPALATESPPGAEAKPTSPTGPSVCASSRPALAKRPVASKALCEGPPEPQAAGCRPqwgkPAQPKLEGPGAPTQG 435
Cdd:PRK12323 404 AAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP----AAAGPRPVAAAAAAA 479
                         90       100
                 ....*....|....*....|..
gi 768001527 436 GSKEAPAGCSDAQPVGPEYVEE 457
Cdd:PRK12323 480 PARAAPAAAPAPADDDPPPWEE 501
 
Name Accession Description Interval E-value
DZF smart00572
domain in DSRM or ZnF_C2H2 domain containing proteins;
652-905 3.29e-131

domain in DSRM or ZnF_C2H2 domain containing proteins;


Pssm-ID: 128842  Cd Length: 246  Bit Score: 394.43  E-value: 3.29e-131
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   652 VLKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTEDEyevssdpeANIVISSCEEPRMQVT 731
Cdd:smart00572   1 TLKGVMRVGSFAKGTLLKGDNVAELVLLCKEKPTSELVARLARKLPEQLKAVTEDE--------ALIIVTSTKEPTMEVG 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   732 ISVTSPLMREDPSTDPEGVEEPQADAGDVLSPKKCLESLAALRHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPA 811
Cdd:smart00572  73 ILITSPLARVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQPLSG 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   812 WAMELLVEKAVSSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFR 891
Cdd:smart00572 153 WPLELLVEKAIGSARQPLGLGDAFRRVFECLASGILLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAFG 232
                          250
                   ....*....|....
gi 768001527   892 QTHKVLGMDLLPPR 905
Cdd:smart00572 233 QIHKILGMDPLPSM 246
DZF pfam07528
DZF domain; The function of this domain is unknown. It is often found associated with ...
658-903 4.71e-67

DZF domain; The function of this domain is unknown. It is often found associated with pfam00098 or pfam00035. This domain has been predicted to belong to the nucleotidyltransferase superfamily.


Pssm-ID: 284860  Cd Length: 248  Bit Score: 224.37  E-value: 4.71e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527  658 RVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTEDEyeVSSDPEANIVISSCEEPRMQVTISVTSP 737
Cdd:pfam07528   1 QVGSFKKGTLLKGSNVADVVVILKTLPTTELVDALAKKVEEDLKTSMKTE--ILQSVEALIVIKNTKEPPLELGFHITSP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527  738 LMREDPSTDPEGVEEPQADAGDVLSPKKCLESLAALRHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPAWAMELL 817
Cdd:pfam07528  79 VAKVRMLIATLPENLRKLEPEDHLDRKKMQSHLASIRHTRWFEENAHHLKSIKVLIRVLKDLCRRFDTFGPLSGWPLDLL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527  818 VEKAV--SSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFRQTHK 895
Cdd:pfam07528 159 AHKAImnNPSRQALPAGEAFRRVFELLASGIFLPGSAGITDPCEKGHTRVHTHLTLQQQDDCCMTAQTLLRVLAHGGYKH 238

                  ....*...
gi 768001527  896 VLGMDLLP 903
Cdd:pfam07528 239 ILGMDGNT 246
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
271-300 2.79e-07

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 47.63  E-value: 2.79e-07
                           10        20        30
                   ....*....|....*....|....*....|
gi 768001527   271 HYCDICKISCAGPQTYREHLGGQKHRKKEA 300
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
467-498 2.06e-05

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 42.24  E-value: 2.06e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 768001527   467 RFHCKLCECSFNDLNAKDLHVRGRRHRLQYRK 498
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
318-350 5.25e-05

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 41.08  E-value: 5.25e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768001527   318 QLHCDLCAVSCTGADAYAAHIRGSKHQKVFKLH 350
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
272-295 1.11e-04

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 39.79  E-value: 1.11e-04
                          10        20
                  ....*....|....*....|....
gi 768001527  272 YCDICKISCAGPQTYREHLGGQKH 295
Cdd:pfam12874   2 YCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
319-343 1.09e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 37.09  E-value: 1.09e-03
                          10        20
                  ....*....|....*....|....*
gi 768001527  319 LHCDLCAVSCTGADAYAAHIRGSKH 343
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
468-492 1.49e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 36.71  E-value: 1.49e-03
                          10        20
                  ....*....|....*....|....*
gi 768001527  468 FHCKLCECSFNDLNAKDLHVRGRRH 492
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
PHA02732 PHA02732
hypothetical protein; Provisional
6-211 2.08e-03

hypothetical protein; Provisional


Pssm-ID: 165099 [Multi-domain]  Cd Length: 1467  Bit Score: 42.05  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527    6 YFDFAQGGGPQYSAQPPTLPLPTVGASYTAQPTPG--------MDPAVNPAFPPAAPAG---YGGYQPHSGQDFA----Y 70
Cdd:PHA02732 1060 YFAASQGPSPFTFVSPSYIFLNSWASSYVAPGFLGspyalpyfMNQTSALVGNTALPKGlnvFSGYMFGAGTVASaflyM 1139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527   71 GSRPQEPVpTATTMATYqdsYSYGQSAAARSYEDRPyfqSAALQSgrmtaaDSGQPGTQeACGQPSPHGSHSHaqppqQA 150
Cdd:PHA02732 1140 NSTPQSPV-LALLLAPY---ISYKFNALSLGFSITA---DAAIFS------LFGIPAPQ-LLSSYIPTGSVLY-----QD 1200
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768001527  151 PIVESGQPASTLSSGYTYPTATGVQPESSASI-----VTSYPPPSYNPTCTAYTAPSYPN-----YDASVY 211
Cdd:PHA02732 1201 PIFTYIPPGIIGMSGTNTFTFKAAQLQLSAASsppaaTTPTPPPSSSSSSSAQSISTSPGqiqivLNGSTT 1271
ARGLU pfam15346
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is ...
516-549 3.37e-03

Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is required for the oestrogen-dependent expression of ESR1 target genes. It functions in cooperation with MED1. The family of proteins is found in eukaryotes.


Pssm-ID: 405931 [Multi-domain]  Cd Length: 151  Bit Score: 38.88  E-value: 3.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 768001527  516 KVLEERMRK----QRHLAEERL---EQLRRWHAERRRLEEE 549
Cdd:pfam15346  85 RILEENNRKieeaQRKEAEERLamlEEQRRMKEERQRREKE 125
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
356-457 8.19e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 8.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768001527 356 PIPTLEPALATESPPGAEAKPTSPTGPSVCASSRPALAKRPVASKALCEGPPEPQAAGCRPqwgkPAQPKLEGPGAPTQG 435
Cdd:PRK12323 404 AAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP----AAAGPRPVAAAAAAA 479
                         90       100
                 ....*....|....*....|..
gi 768001527 436 GSKEAPAGCSDAQPVGPEYVEE 457
Cdd:PRK12323 480 PARAAPAAAPAPADDDPPPWEE 501
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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