NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|768013479|ref|XP_011527483|]
View 

shieldin complex subunit 1 isoform X5 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4521 super family cl20897
Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally ...
 1-63 5.63e-29

Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally uncharacterized. The family includes the Chromosome 20 protein C20orf196.


The actual alignment was detected with superfamily member pfam15021:

Pssm-ID: 464452  Cd Length: 204  Bit Score: 101.79  E-value: 5.63e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768013479    1 MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPGVSH 63
Cdd:pfam15021   1 MESQEATPSSQSEESSILDLPSVCDIRDYVLQRPSQEASSEAFSSVEFHSFPCSSDVDPDSSN 63
 
Name Accession Description Interval E-value
DUF4521 pfam15021
Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally ...
 1-63 5.63e-29

Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally uncharacterized. The family includes the Chromosome 20 protein C20orf196.


Pssm-ID: 464452  Cd Length: 204  Bit Score: 101.79  E-value: 5.63e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768013479    1 MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPGVSH 63
Cdd:pfam15021   1 MESQEATPSSQSEESSILDLPSVCDIRDYVLQRPSQEASSEAFSSVEFHSFPCSSDVDPDSSN 63
 
Name Accession Description Interval E-value
DUF4521 pfam15021
Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally ...
 1-63 5.63e-29

Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally uncharacterized. The family includes the Chromosome 20 protein C20orf196.


Pssm-ID: 464452  Cd Length: 204  Bit Score: 101.79  E-value: 5.63e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768013479    1 MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPGVSH 63
Cdd:pfam15021   1 MESQEATPSSQSEESSILDLPSVCDIRDYVLQRPSQEASSEAFSSVEFHSFPCSSDVDPDSSN 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH