|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
515-774 |
3.95e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 97.00 E-value: 3.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 515 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 594
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 595 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 674
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 675 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 753
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250 260
....*....|....*....|.
gi 768024013 754 ASAYAALGTAYRMIQKYDKAL 774
Cdd:COG0457 225 LALALLLALRLAALALYQYRA 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
47-937 |
9.83e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 99.00 E-value: 9.83e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 47 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 123
Cdd:TIGR02917 113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 124 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 203
Cdd:TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 204 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 277
Cdd:TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 278 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 357
Cdd:TIGR02917 335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 358 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 431
Cdd:TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 432 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 504
Cdd:TIGR02917 468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 505 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 584
Cdd:TIGR02917 537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 585 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:TIGR02917 591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 664 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 740
Cdd:TIGR02917 665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 741 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 818
Cdd:TIGR02917 730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 819 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 898
Cdd:TIGR02917 795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858
|
890 900 910 920
....*....|....*....|....*....|....*....|
gi 768024013 899 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:TIGR02917 859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
875-1137 |
1.16e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 92.76 E-value: 1.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 875 DRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELgeaf 954
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYE------KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 955 nkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETnnpt 1034
Cdd:COG0457 76 --AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD---- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1035 cqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 1114
Cdd:COG0457 144 --ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
250 260
....*....|....*....|...
gi 768024013 1115 DEAKIRHGLGLSLWASGNLEEAQ 1137
Cdd:COG0457 222 LLLLALALLLALRLAALALYQYR 244
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
416-679 |
3.15e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.44 E-value: 3.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 416 YHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI---AEDLKDRAAEGRASSNLGIIHQMKGDYDT 492
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaAAAAAALLLLAALLELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 493 ALklhkTHLCIAQELS-DYAAqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHD 571
Cdd:COG3914 97 AL----ALYRRALALNpDNAE---ALFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 572 RALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQ 651
Cdd:COG3914 164 EAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD------AHSNLLFALRQACDWE 231
|
250 260
....*....|....*....|....*...
gi 768024013 652 EAVKYYEQDLALAKDLHDKLSQAKAYCN 679
Cdd:COG3914 232 VYDRFEELLAALARGPSELSPFALLYLP 259
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
553-814 |
3.54e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.83 E-value: 3.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 553 QASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmeg 632
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 633 egkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQA 712
Cdd:COG0457 78 ---ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEA------YERALELDPD 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 713 KFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPG 792
Cdd:COG0457 143 DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
|
250 260
....*....|....*....|..
gi 768024013 793 ECRAHGHLAAVYMALGKYTMAF 814
Cdd:COG0457 223 LLLALALLLALRLAALALYQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
791-989 |
7.49e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 84.67 E-value: 7.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 791 PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgn 870
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPD-DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 871 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHEL 950
Cdd:COG0457 72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139
|
170 180 190
....*....|....*....|....*....|....*....
gi 768024013 951 GEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 989
Cdd:COG0457 140 DPDD--ADALYNLGIALEKLGRYEEALELLEKLEAAALA 176
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
753-1000 |
1.49e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 83.90 E-value: 1.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 753 EASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 832
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL-----DPDD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 833 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnr 912
Cdd:COG0457 76 -AEALNNLGLALQALGRYEEALEDYDKALELDPDDA---------EALYNLGLALLELGRYDEAIEAYERALELDP---- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 913 mqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLvvAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKD 992
Cdd:COG0457 142 --DDADALYNLGIALEKLGRYEEALELLEKLE--AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
|
....*...
gi 768024013 993 RALESDAA 1000
Cdd:COG0457 218 ALAELLLL 225
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
516-821 |
3.67e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.24 E-value: 3.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 516 AYGNMGNAYNAL--GMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 593
Cdd:COG2956 8 ALGWYFKGLNYLlnGQPDKAIDLLEEALELD------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 594 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQ 673
Cdd:COG2956 76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------N 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 674 AKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlE 753
Cdd:COG2956 144 AHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD------Y 211
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768024013 754 ASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQL 821
Cdd:COG2956 212 LPALPRLAELYEKLGDPEEA-------LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
593-839 |
1.39e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 80.82 E-value: 1.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 593 EARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdkls 672
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 673 qAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 752
Cdd:COG0457 76 -AEALNNLGLALQALGRYEEALED------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD----- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 753 eASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSL 832
Cdd:COG0457 144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
|
....*..
gi 768024013 833 EAQVYGN 839
Cdd:COG0457 223 LLLALAL 229
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
640-937 |
4.05e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 4.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 640 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGN 719
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRI------HQKLLERDPDRAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHG 798
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 799 HLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQQLamlqqlsgnESVLDRGR 878
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKALKL-----DPDC-ARALLLLAELYLEQGDYEEAIAALERAL---------EQDPDYLP 213
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 768024013 879 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:COG2956 214 ALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
350-597 |
5.37e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 79.28 E-value: 5.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 350 ELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIakdlgnKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELME 429
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 430 kaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 509
Cdd:COG0457 78 ------ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 510 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:COG0457 146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
|
....*...
gi 768024013 590 IQSEARAL 597
Cdd:COG0457 218 ALAELLLL 225
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
720-1019 |
5.41e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.77 E-value: 5.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 720 LGDIFICKKDINGAIKFYEQqlglAHQVKDRRLEAsaYAALGTAYRMIQKYDKALGYHTQELEVYQELSdlpgecRAHGH 799
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEE----ALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 800 LAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLE-AQVYgnmgitkmnmnvmeEAIGYFEQQLAMLQQLSgnESVLDRGR 878
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLlAEIY--------------EQEGDWEKAIEVLERLL--KLGPENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 879 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHElgeafnKAQ 958
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLP 213
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768024013 959 AYGELGSLHSQLGNYEQAISCLERQLNIARDmkdraleSDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG2956 214 ALPRLAELYEKLGDPEEALELLRKALELDPS-------DDLLLALADLLERKEGLEAALAL 267
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
800-1105 |
5.99e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.77 E-value: 5.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 800 LAAVYMALGKYTMAFK-CYEEQLD-----LGQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQlsgnesv 873
Cdd:COG2956 2 LLPVAAALGWYFKGLNyLLNGQPDkaidlLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 874 ldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHElgea 953
Cdd:COG2956 75 --RAEALLELAQDYLKAGLLDRAEELLEKLLELDP------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE---- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 954 fnKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYhqldLQIAEETNNP 1033
Cdd:COG2956 143 --NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAA----LERALEQDPD 210
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024013 1034 TCQgrAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAktvsyssLGRTHHALQNYSQAVMYLQEGLR 1105
Cdd:COG2956 211 YLP--ALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-------LADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
883-1182 |
6.52e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.77 E-value: 6.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 883 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHElgeafnKAQAYGE 962
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDP------ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 963 LGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGN 1042
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1043 LGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAeqlgrrEDEAKIRHG 1122
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDP--DCARA----LLLLAELYLEQGDYEEAIAALERALEQD------PDYLPALPR 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1123 LGLSLWASGNLEEAQHQLYRAsalfetIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSL 1182
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKA------LELDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
316-575 |
2.57e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 77.35 E-value: 2.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 316 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQskdelsEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeAR 395
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 396 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegr 475
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 476 ASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS 555
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
|
250 260
....*....|....*....|
gi 768024013 556 THGNLAVAYQALGAHDRALQ 575
Cdd:COG0457 226 ALALLLALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
560-862 |
4.60e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.08 E-value: 4.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 560 LAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHN 639
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 640 LGYAHYCLGNYQEAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLaqslnnSQAKFRALGN 719
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEK--LLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKL------GPENAHAYCE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 798
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALP 216
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024013 799 HLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYgnmgitkMNMNVMEEAIGYFEQQLA 862
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-------ERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
359-622 |
1.43e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 75.54 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 359 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYA 438
Cdd:COG2956 47 ALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALR 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 439 GLGHAARCMQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYG 518
Cdd:COG2956 115 LLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 519 NMGNAYNALGMYDQAVKYHRQELQISMEvndrasQASTHGNLAVAYQALGAHDRALQHYQNHLniarelrDIQSEARALS 598
Cdd:COG2956 183 LLAELYLEQGDYEEAIAALERALEQDPD------YLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLL 249
|
250 260
....*....|....*....|....
gi 768024013 599 NLGNFHCSRGEYVQAAPYYEQYLR 622
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
284-1150 |
8.48e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 8.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 284 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALAshkqcvllakqskdELSEARELG-NMGA 362
Cdd:TIGR02917 32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEK--------------ELRKALSLGyPKNQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 363 V-------YIAMGDFENAVQcheqhLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKaiemR 435
Cdd:TIGR02917 92 VlpllaraYLLQGKFQQVLD-----ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----S 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 436 AYAGLGHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGR 515
Cdd:TIGR02917 159 LYAKLGLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 516 AygNMGNAYNALGMYDQAVKYHRQELQIsmeVNDRASQASTHGnlAVAYQAlGAHDRALQHYQNHLNIARElrdiQSEAR 595
Cdd:TIGR02917 231 L--ALATILIEAGEFEEAEKHADALLKK---APNSPLAHYLKA--LVDFQK-KNYEDARETLQDALKSAPE----YLPAL 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 596 ALSNLGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAK 675
Cdd:TIGR02917 299 LLAGASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 676 AYcnLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLgdiFICKKDINGAIKFYEQQLGLAHQVKDRRLeas 755
Cdd:TIGR02917 364 AA--LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS---KLSQGDPSEAIADLETAAQLDPELGRADL--- 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 756 ayaALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQ---------- 825
Cdd:TIGR02917 436 ---LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPdffpaaanla 506
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 826 ----KLKDPSLEAQVYGNM-GITKMNMNVMeeaigyfeQQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEE 895
Cdd:TIGR02917 507 ridiQEGNPDDAIQRFEKVlTIDPKNLRAI--------LALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYL 578
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 896 AIKYYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYE 974
Cdd:TIGR02917 579 GKGQLKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP------DSALALLLLADAYAVMKNYA 652
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 975 QAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtnnptcqgrAYGN--LGLTYESLG 1051
Cdd:TIGR02917 653 KAITSLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQK 717
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1052 TFERAVVYQEQHLSIAAQmNDLAAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasG 1131
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------A 777
|
890
....*....|....*....
gi 768024013 1132 NLEEAQHQLYRASALFETI 1150
Cdd:TIGR02917 778 ELYLAQKDYDKAIKHYQTV 796
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
63-157 |
3.71e-13 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 72.51 E-value: 3.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 63 RQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRH 142
Cdd:PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86
|
90
....*....|....*
gi 768024013 143 ADALAAFASGLAQDP 157
Cdd:PLN03088 87 QTAKAALEKGASLAP 101
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
673-923 |
5.12e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.42 E-value: 5.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 673 QAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 752
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIED------YEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 753 eASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 832
Cdd:COG0457 76 -AEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYERALEL-----DPDD 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 833 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNR 912
Cdd:COG0457 144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
|
250
....*....|.
gi 768024013 913 MQDQAKAYRGL 923
Cdd:COG0457 223 LLLALALLLAL 233
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
737-904 |
1.18e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.72 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 737 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFK 815
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALnPDNAEALFNLGNLLLALGRLEEALA 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 816 CYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLqqlsgnesvLDRGRAYGNLGDCYEALGDYEE 895
Cdd:COG3914 134 ALRRALAL-----NPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELD---------PDNAEALNNLGNALQDLGRLEE 198
|
....*....
gi 768024013 896 AIKYYEQYL 904
Cdd:COG3914 199 AIAAYRRAL 207
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
532-744 |
1.47e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.33 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 532 QAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQ---SEARALSNLGNFHCSRG 608
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAallLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 609 EYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLGLAFKALL 688
Cdd:COG3914 93 RYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 768024013 689 NFSKAEECqkYLLSLAQSLNNSQakfrALGNLGDIFICKKDINGAIKFYEQQLGLA 744
Cdd:COG3914 161 RLEEAIAA--LRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
276-537 |
2.15e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.99 E-value: 2.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 276 AHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQCVllakQSKDELSEAR 355
Cdd:COG2956 44 AHLALGNLYRRRGEYDRAIRIHQK----LLERDPDRAE--ALLELAQDYLKAGLLDRAEELLEKLL----ELDPDDAEAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 356 ELgnMGAVYIAMGDFENAVQCHEQHLKIAKdlgnkrEEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMekaiemR 435
Cdd:COG2956 114 RL--LAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA------R 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 436 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 515
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
250 260
....*....|....*....|..
gi 768024013 516 AYGNMGNAYNALGMYDQAVKYH 537
Cdd:COG2956 254 LLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
304-987 |
3.85e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.27 E-value: 3.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 304 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAvqchE 378
Cdd:TIGR02917 178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN------IAVLLALATILIEAGEFEEA----E 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 379 QHLKIAKDLGNKREEARAYSNLgsaYHYRR-NFDKAMSYHNYVLELAQELMEkaieMRAYAGLGHAARcmQDLERAKQYH 457
Cdd:TIGR02917 248 KHADALLKKAPNSPLAHYLKAL---VDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQAYQYL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 458 EQQLGIAEDLKdraaegRASSNLGIIHQMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKY- 536
Cdd:TIGR02917 319 NQILKYAPNSH------QARRLLASIQLRLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAEYl 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 537 ------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQSEARA 596
Cdd:TIGR02917 387 akateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQPDNAS 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 597 LSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDLHDKLS 672
Cdd:TIGR02917 467 LHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRAILALA 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 673 QAKAYCN--------LGLAFKA-------LLNFSKAEECQKYL---LSLAQS-LNNSQAKFRALGNLGDIFICKKDINGA 733
Cdd:TIGR02917 541 GLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAGDLNKA 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 734 IKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMA 813
Cdd:TIGR02917 621 VSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAKRTESA 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 814 FKCYEEQLDlgQKLKDP---SLEAQVYgnmgitkMNMNVMEEAIGYFEQ------------QLAMLQQLSGN-------- 870
Cdd:TIGR02917 689 KKIAKSLQK--QHPKAAlgfELEGDLY-------LRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeavktl 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 871 ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghrAMGSLQQ----ALVCFEK 942
Cdd:TIGR02917 760 EAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL-----AWLYLELkdprALEYAER 828
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 768024013 943 rlvvAHELgeAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 987
Cdd:TIGR02917 829 ----ALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
72-166 |
4.89e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.72 E-value: 4.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457 22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101
|
90
....*....|....*
gi 768024013 152 GLAQDPKSLQLLVGM 166
Cdd:COG0457 102 ALELDPDDAEALYNL 116
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
737-1040 |
5.64e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.41 E-value: 5.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 737 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKC 816
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALAL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 817 YEEQLDLgqklkDPsleaqvygnmgitkmnmnvmeeaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEA 896
Cdd:COG3914 101 YRRALAL-----NP--------------------------------------------DNAEALFNLGNLLLALGRLEEA 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 897 IKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYEQA 976
Cdd:COG3914 132 LAALRRALALN------PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP------DNAEALNNLGNALQDLGRLEEA 199
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024013 977 ISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAY 1040
Cdd:COG3914 200 IAAYRRALELDPD------NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
72-166 |
1.12e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.25 E-value: 1.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
90
....*....|....*
gi 768024013 152 GLAQDPKSLQLLVGM 166
Cdd:COG3914 172 ALELDPDNAEALNNL 186
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
560-811 |
1.46e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.87 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 560 LAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHN 639
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 640 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDklsqakAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGN 719
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAA------LRRALALNPDFAEAYLN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 798
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEA-------IAAYRRALELdPDNADAHS 218
|
250
....*....|...
gi 768024013 799 HLAAVYMALGKYT 811
Cdd:COG3914 219 NLLFALRQACDWE 231
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
72-188 |
3.85e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.03 E-value: 3.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457 56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135
|
90 100 110
....*....|....*....|....*....|....*..
gi 768024013 152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQK 188
Cdd:COG0457 136 ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
72-196 |
4.83e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 67.33 E-value: 4.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3914 126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 768024013 152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLD---KSPF 196
Cdd:COG3914 206 ALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGpseLSPF 253
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
72-158 |
1.30e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 63.01 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG4785 87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166
|
....*..
gi 768024013 152 GLAQDPK 158
Cdd:COG4785 167 ALELDPN 173
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
240-494 |
1.42e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.10 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 240 LSSAYWSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSS 319
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQ----ALELDPDDAE--ALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 320 LGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSN 399
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------ADALYN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 400 LGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSN 479
Cdd:COG0457 150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
250
....*....|....*
gi 768024013 480 LGIIHQMKGDYDTAL 494
Cdd:COG0457 230 LLALRLAALALYQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
998-1268 |
1.51e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.10 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 998 DAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMndlaakT 1077
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1078 VSYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqls 1157
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERA-------------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1158 tdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVL 1237
Cdd:COG0457 137 ----LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
250 260 270
....*....|....*....|....*....|.
gi 768024013 1238 YYSLAAGYLYSWLLAPGAGIVKFHEHYLGEN 1268
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAALALYQY 243
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
60-192 |
7.49e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 7.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 60 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYL 139
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 768024013 140 GRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLD 192
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
70-159 |
8.65e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 8.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 70 HDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 149
Cdd:COG4783 50 QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
90
....*....|
gi 768024013 150 ASGLAQDPKS 159
Cdd:COG4783 130 EKALELDPDD 139
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
31-146 |
2.64e-09 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 61.54 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 31 ASAPIPLFGADTIGQrsPDGPvlSKAEFVEKVRQS---------NQACHDGDFHTAIVLYNEALAVDPqNCILYSNRSAA 101
Cdd:TIGR00990 95 APKNAPVEPADELPE--IDES--SVANLSEEERKKyaaklkekgNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAAC 169
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 768024013 102 YMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADAL 146
Cdd:TIGR00990 170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
834-909 |
2.81e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.09 E-value: 2.81e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024013 834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
101-382 |
3.03e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 59.74 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 101 AYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLE 180
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 181 PTYQQLQKMKLDKSPfvVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLKLRgsvfSALSSAYWSLGNTEKSTGYMQQD 260
Cdd:COG2956 97 ELLEKLLELDPDDAE--ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 261 LDVAKTLGdqtgecRAHGNLGSAFFSKGNYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQC 340
Cdd:COG2956 171 LKLDPDCA------RALLLLAELYLEQGDYEEAIA------ALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 768024013 341 VLLAKQSKDELSEARelgnmgaVYIAMGDFENAVQCHEQHLK 382
Cdd:COG2956 239 LELDPSDDLLLALAD-------LLERKEGLEAALALLERQLR 273
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
845-1148 |
3.45e-09 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 60.02 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 845 MNMNVMEEAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 924
Cdd:pfam17874 12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 925 NGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 1001
Cdd:pfam17874 88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1002 gLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--------CQGRAY---GNLGLTYESLGTFERAV----VYQEQHLSI 1066
Cdd:pfam17874 167 -LARIALAQGELEEALTLLRRAELLARQSFFHVdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLERELRN 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1067 AAqmndlaaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:pfam17874 246 LA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSL 309
|
..
gi 768024013 1147 FE 1148
Cdd:pfam17874 310 AE 311
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
754-905 |
5.01e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 5.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 754 ASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlE 833
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELD------PDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-----DPD-E 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024013 834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLS 905
Cdd:COG4783 72 PEARLNLGLALLKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
251-500 |
6.34e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 6.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 251 EKSTGYMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAmklkdrEAASSALSSLGHVYTAIGDY 330
Cdd:COG3914 55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALN------PDNAEALFNLGNLLLALGRL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 331 PNALASHKQCVLLakqsKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNF 410
Cdd:COG3914 129 EEALAALRRALAL----NPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 411 DKAMSYHNYVLELAQELmekaiemraYAGLGHAARCMQDLERAKQYHEQQlgiaEDLKDRAAEGRASSNLGIIHQMKGDY 490
Cdd:COG3914 197 EEAIAAYRRALELDPDN---------ADAHSNLLFALRQACDWEVYDRFE----ELLAALARGPSELSPFALLYLPDDDP 263
|
250
....*....|
gi 768024013 491 DTALKLHKTH 500
Cdd:COG3914 264 AELLALARAW 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
947-1146 |
6.51e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 6.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1027 aeetnNPTCqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmnDLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG3914 108 -----NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNP---DFAE---AYLNLGEALRRLGRLEEAIAALRRALEL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 768024013 1107 AEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:COG3914 176 DP------DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
72-161 |
8.26e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 8.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALdDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84
|
90
....*....|
gi 768024013 152 GLAQDPKSLQ 161
Cdd:COG3063 85 ALELDPSALR 94
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
72-156 |
9.46e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 9.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
....*
gi 768024013 152 GLAQD 156
Cdd:COG0457 170 LEAAA 174
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
72-186 |
1.26e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.82 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG2956 124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203
|
90 100 110
....*....|....*....|....*....|....*
gi 768024013 152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQL 186
Cdd:COG2956 204 ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
72-157 |
1.34e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
....*.
gi 768024013 152 GLAQDP 157
Cdd:COG5010 148 ALGTSP 153
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
366-624 |
2.06e-08 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 59.10 E-value: 2.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 366 AMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIE-----MRAYAGL 440
Cdd:COG3899 717 ARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRhgnppASARAYA 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 441 GHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGnM 520
Cdd:COG3899 797 NLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA-A 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 521 GNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNL 600
Cdd:COG3899 876 AAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALA 955
|
250 260
....*....|....*....|....
gi 768024013 601 GNFHCSRGEYVQAAPYYEQYLRLA 624
Cdd:COG3899 956 AALALAAAAAAAAAAALAAAAAAA 979
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
549-1129 |
2.12e-08 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 59.10 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 549 DRASQASTHGNLAVAYQALGAHDRALQHYQ--NHLNIARELRDIqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:COG3899 661 PPEERRALHRRIARALEARGPEPLEERLFElaHHLNRAGERDRA---ARLLLRAARRALARGAYAEALRYLERALELLPP 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 627 LQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL-------AKDLHDKLSQAKAYCNLGLAFkaLLNFSKAEECQKY 699
Cdd:COG3899 738 DPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGLLL--LGDYEEAYEFGEL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 700 LLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALGTAYRMiQKYDKALGYHTQ 779
Cdd:COG3899 816 ALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAA-AAALAAAAAAAA 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 780 ELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQ 859
Cdd:COG3899 895 RLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAA 974
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 860 QLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVC 939
Cdd:COG3899 975 AAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAA 1054
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 940 FEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG3899 1055 AAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAA 1134
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1020 HQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMY 1099
Cdd:COG3899 1135 LLLLAAALALALAALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLAALLALAARLAALLALAL 1214
|
570 580 590
....*....|....*....|....*....|
gi 768024013 1100 LQEGLRLAEQLGRREDEAKIRHGLGLSLWA 1129
Cdd:COG3899 1215 LALEAAALLLLLLLAALALAAALLALRLLA 1244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
875-987 |
2.67e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.86 E-value: 2.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 875 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeaf 954
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALDP------ 82
|
90 100 110
....*....|....*....|....*....|...
gi 768024013 955 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 987
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
928-1208 |
2.85e-08 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 58.72 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 928 RAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI-------ARDMKDRALESDAA 1000
Cdd:COG3899 716 LARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAY 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1001 CGLGGVYqqMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAkTVSY 1080
Cdd:COG3899 796 ANLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAAL-ALLA 872
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1081 SSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDY 1160
Cdd:COG3899 873 LAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAA 952
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 768024013 1161 KLSLFDlqtssYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQ 1208
Cdd:COG3899 953 ALAAAL-----ALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAA 995
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
504-666 |
4.82e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 504 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndrasqastHGNLAVAYQALGAHDRALQHYQNHLNI 583
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------FALLGEILLQLGDLDEAIVLLHEALEL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 584 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:COG4783 68 DPD------EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
...
gi 768024013 664 AKD 666
Cdd:COG4783 136 DPD 138
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
85-359 |
5.51e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 55.40 E-value: 5.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 85 LAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLV 164
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 165 GMveaamkspmrdsleptyqqlqkmkldkspfvvvsvvGQELLTAGHHGASVVVLEAALKIGTCSLKlrgsVFSALSSAY 244
Cdd:COG0457 81 NL------------------------------------GLALQALGRYEEALEDYDKALELDPDDAE----ALYNLGLAL 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 245 WSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVY 324
Cdd:COG0457 121 LELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194
|
250 260 270
....*....|....*....|....*....|....*
gi 768024013 325 TAIGDYPNALASHKQCVLLAKQSKDELSEARELGN 359
Cdd:COG0457 195 VLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
515-586 |
8.37e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 50.85 E-value: 8.37e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024013 515 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 586
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
290-459 |
9.48e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.54 E-value: 9.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 290 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvLLAKQSkdelSEARELGNMGAVYIAMGD 369
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRR--ALALNP----DNAEALFNLGNLLLALGR 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 370 FENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQD 449
Cdd:COG3914 128 LEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQDLGR 195
|
170
....*....|
gi 768024013 450 LERAKQYHEQ 459
Cdd:COG3914 196 LEEAIAAYRR 205
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
957-1194 |
1.18e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.54 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLggvYQQMGEYDTALQYHQLDLQIAEETNNPTCQ 1036
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLL---LAALAEAAAAALLALAAGEAAAAAAALLLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1037 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDE 1116
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNP--DNAEA----LFNLGNLLLALGRLEEALAALRRALALNP------DF 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768024013 1117 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETiRHEAqlstdyklslfdlqtssYQALQRVLVSLGHHDEALAVAER 1194
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPD-NAEA-----------------LNNLGNALQDLGRLEEAIAAYRR 205
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
957-1029 |
1.29e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 50.08 E-value: 1.29e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024013 957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1029
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
387-674 |
1.50e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 56.41 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 387 LGNKREEARAYsNLGSAYHYRRN--FDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI- 463
Cdd:COG3899 697 RAGERDRAARL-LLRAARRALARgaYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAr 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 464 ------AEDLKDRAAEGRASSNLGIIhqMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYH 537
Cdd:COG3899 776 alaalaALRHGNPPASARAYANLGLL--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELL 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 538 RQELQISMEVNDRA------SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYV 611
Cdd:COG3899 854 REALEAGLETGDAAlallalAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALAL 933
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024013 612 QAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQA 674
Cdd:COG3899 934 AAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
883-1029 |
1.86e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 883 LGDCYEALGDYEEAIKYYEQYLsvaqslNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGE 962
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKAL------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024013 963 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1029
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
563-669 |
2.34e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.17 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 563 AYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYyEQYLRLAPDlqdmegEGKVCHNLGY 642
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 768024013 643 AHYCLGNYQEAVKYYEQDLALAKDLHD 669
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
504-665 |
2.77e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.50 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 504 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNI 583
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 584 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:COG5010 84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------AYSNLAALLLSLGQDDEAKAALQRALGT 151
|
..
gi 768024013 664 AK 665
Cdd:COG5010 152 SP 153
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
552-626 |
2.87e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 49.31 E-value: 2.87e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024013 552 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
471-626 |
3.75e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 471 AAEGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndR 550
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLE------KALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------D 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024013 551 ASQASTHGNLAVAYQALGAHDRALQHYQnhlniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:COG4783 69 PDEPEARLNLGLALLKAGDYDEALALLE------KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
72-159 |
5.22e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.00 E-value: 5.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG4235 31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110
|
....*...
gi 768024013 152 GLAQDPKS 159
Cdd:COG4235 111 LLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
77-172 |
5.80e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.00 E-value: 5.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 77 AIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 156
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90
....*....|....*.
gi 768024013 157 PKSLQLLVGMVEAAMK 172
Cdd:COG4235 82 PDNPEALYLLGLAAFQ 97
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
290-624 |
7.12e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 54.09 E-value: 7.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 290 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYiaMGD 369
Cdd:COG3899 728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL--LGD 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 370 FENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQD 449
Cdd:COG3899 806 YEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAA 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 450 LERAKQYHEQQLGIAE------DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNA 523
Cdd:COG3899 886 LAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAA 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 524 YNALGmYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNF 603
Cdd:COG3899 966 AAAAA-ALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALA 1044
|
330 340
....*....|....*....|.
gi 768024013 604 HCSRGEYVQAAPYYEQYLRLA 624
Cdd:COG3899 1045 LLAALAAAAAAAAAAAALAAA 1065
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
357-426 |
1.08e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 1.08e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024013 357 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDL--GNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 426
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
785-907 |
1.11e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 785 QELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQqlaML 864
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPD-NADALLDLAEALLAAGDTEEAEELLER---AL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 768024013 865 QQLSGNEsvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 907
Cdd:COG4235 79 ALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
523-629 |
1.37e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.86 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 523 AYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQhYQNHLNIARElrdiqsEARALSNLGN 602
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 768024013 603 FHCSRGEYVQAAPYYEQYLRLAPDLQD 629
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
72-225 |
2.42e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.88 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024013 152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLqkMKLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKI 225
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERA--LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
915-989 |
2.42e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.61 E-value: 2.42e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024013 915 DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAF--NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 989
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
475-543 |
3.07e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.23 E-value: 3.07e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768024013 475 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 543
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
549-695 |
3.19e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 549 DRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlq 628
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024013 629 dmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEE 695
Cdd:COG5010 87 ----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKA 143
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
514-626 |
3.26e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 514 GRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 593
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLD------PDNADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84
|
90 100 110
....*....|....*....|....*....|...
gi 768024013 594 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:COG4235 85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
956-1107 |
3.39e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 956 KAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQ-YHQLdlqIAEETNNPt 1034
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVlLHEA---LELDPDEP- 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024013 1035 cqgRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLaaktvsYSSLGRTHHALQNYSQAVMYLQEGLRLA 1107
Cdd:COG4783 73 ---EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
129-401 |
3.73e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.11 E-value: 3.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 129 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLqkMKLDKSPFVVVSVVGQELLT 208
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL--LERDPDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 209 AGHHGASVVVLEAALKIGtcslKLRGSVFSALSSAYWSLGNTEKStgymqqdLDVAKTLGDQTGEC-RAHGNLGSAFFSK 287
Cdd:COG2956 89 AGLLDRAEELLEKLLELD----PDDAEALRLLAEIYEQEGDWEKA-------IEVLERLLKLGPENaHAYCELAELYLEQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 288 GNYREALTNhrhqlvLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvlLAKQSKDELSEARELGNmgaVYIAM 367
Cdd:COG2956 158 GDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER---ALEQDPDYLPALPRLAE---LYEKL 225
|
250 260 270
....*....|....*....|....*....|....
gi 768024013 368 GDFENAVQCHEQHLKIAKDLGNKREEARAYSNLG 401
Cdd:COG2956 226 GDPEEALELLRKALELDPSDDLLLALADLLERKE 259
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
516-626 |
4.43e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 48.51 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 595
Cdd:PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 768024013 596 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 626
Cdd:PRK02603 108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
83-172 |
4.63e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 51.15 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 83 EALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 162
Cdd:COG3914 69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148
|
90
....*....|
gi 768024013 163 LVGMVEAAMK 172
Cdd:COG3914 149 YLNLGEALRR 158
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
313-386 |
4.67e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 4.67e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024013 313 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 386
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
800-944 |
5.54e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 5.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 800 LAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRA 879
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPEA 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024013 880 YGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRL 944
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKALK------LDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
834-990 |
6.27e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.11 E-value: 6.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 913
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----- 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024013 914 qDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELgeafnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 990
Cdd:COG4783 70 -DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
962-1198 |
7.12e-06 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 50.69 E-value: 7.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 962 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 1030
Cdd:NF040586 439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1031 -NNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLAAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1104
Cdd:NF040586 514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1105 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1181
Cdd:NF040586 590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659
|
250
....*....|....*..
gi 768024013 1182 LGHHDEALAVAERGRTR 1198
Cdd:NF040586 660 LGDADEARELAREVLDR 676
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
886-989 |
7.93e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 7.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 886 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcFEKrlvvAHELgeAFNKAQAYGELGS 965
Cdd:COG3063 1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67
|
90 100
....*....|....*....|....
gi 768024013 966 LHSQLGNYEQAISCLERQLNIARD 989
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
392-546 |
1.07e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 392 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElmekaiEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDlkdra 471
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024013 472 aEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISME 546
Cdd:COG4783 71 -EPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
637-670 |
1.10e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 43.30 E-value: 1.10e-05
10 20 30
....*....|....*....|....*....|....
gi 768024013 637 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 670
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
875-944 |
1.33e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.69 E-value: 1.33e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024013 875 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL--NRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRL 944
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
959-994 |
1.47e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 43.30 E-value: 1.47e-05
10 20 30
....*....|....*....|....*....|....*.
gi 768024013 959 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 994
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
879-911 |
2.11e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.53 E-value: 2.11e-05
10 20 30
....*....|....*....|....*....|...
gi 768024013 879 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 911
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
89-159 |
2.34e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 47.22 E-value: 2.34e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768024013 89 PQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKS 159
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
999-1069 |
2.57e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 2.57e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024013 999 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 1069
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
529-763 |
2.76e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.83 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 529 MYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE-------ARALSNLG 601
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpdlAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 602 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLG 681
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD------YAYAYLNRG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 682 LAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkFRALgnLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALG 761
Cdd:COG4785 149 IALYYLGRYELAIA----DLEKALELDPNDP-ERAL--WLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221
|
..
gi 768024013 762 TA 763
Cdd:COG4785 222 LA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
743-904 |
3.80e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 743 LAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLD 822
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 823 LGQKlkdpslEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQ 902
Cdd:COG5010 83 LDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---------NAYSNLAALLLSLGQDDEAKAALQR 147
|
..
gi 768024013 903 YL 904
Cdd:COG5010 148 AL 149
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
672-823 |
4.53e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 672 SQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrr 751
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEA------LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024013 752 lEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDL 823
Cdd:COG4783 71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
907-1070 |
4.66e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 4.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 907 AQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcfekrlvvahelgEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI 986
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALE-------------LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 987 ARDmkdralESDAACGLGGVYQQMGEYDTALQYhqLDLQIAEETNNPTcqgrAYGNLGLTYESLGTFERAVVYQEQHLSI 1066
Cdd:COG4783 68 DPD------EPEARLNLGLALLKAGDYDEALAL--LEKALKLDPEHPE----AYLRLARAYRALGRPDEAIAALEKALEL 135
|
....
gi 768024013 1067 AAQM 1070
Cdd:COG4783 136 DPDD 139
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1079-1148 |
4.67e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 4.67e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024013 1079 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1148
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
878-909 |
6.11e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.25 E-value: 6.11e-05
10 20 30
....*....|....*....|....*....|..
gi 768024013 878 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
803-912 |
6.66e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 6.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 803 VYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYfeQQLAMLQQlsgnesvlDRGRAYGN 882
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL-----DPD-NADALNNLGLLLLEQGRYDEAIAL--EKALKLDP--------NNAEALLN 64
|
90 100 110
....*....|....*....|....*....|
gi 768024013 883 LGDCYEALGDYEEAIKYYEQYLSVAQSLNR 912
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
715-786 |
6.78e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 6.78e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024013 715 RALGNLGDIFICKKDINGAIKFYEQQLGLAHQV--KDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 786
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
878-909 |
7.13e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 41.23 E-value: 7.13e-05
10 20 30
....*....|....*....|....*....|..
gi 768024013 878 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
638-706 |
1.16e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 1.16e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768024013 638 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQS 706
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
851-960 |
1.22e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 851 EEAIGYFEQqlaMLQQLSGNESvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDqakAYRGLGNGHRAM 930
Cdd:COG1729 10 DEAIAAFKA---FLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|
gi 768024013 931 GSLQQALVCFEKrLVVAHELGEAFNKAQAY 960
Cdd:COG1729 81 GDYDKARATLEE-LIKKYPDSEAAKEARAR 109
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
966-1068 |
1.31e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 966 LHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLdlqIAEETNNPtcqgRAYGNLGL 1045
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA---LKLDPNNA----EALLNLAE 67
|
90 100
....*....|....*....|...
gi 768024013 1046 TYESLGTFERAVVYQEQHLSIAA 1068
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
640-786 |
1.32e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.64 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 640 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGN 719
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIV------LLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024013 720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 786
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
915-1019 |
1.46e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 915 DQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdra 994
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEK----ALRLDP--DNADALLDLAEALLAAGDTEEAEELLERALALDPD----- 83
|
90 100
....*....|....*....|....*
gi 768024013 995 lESDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG4235 84 -NPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
434-506 |
1.53e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 1.53e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024013 434 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 506
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
596-631 |
1.53e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 40.22 E-value: 1.53e-04
10 20 30
....*....|....*....|....*....|....*.
gi 768024013 596 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 631
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1038-1109 |
1.82e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.22 E-value: 1.82e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024013 1038 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 1109
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
101-190 |
1.99e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 101 AYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALaAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLE 180
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 768024013 181 PTYQQLQKMK 190
Cdd:COG3063 80 AYLERALELD 89
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
878-902 |
1.99e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.74 E-value: 1.99e-04
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
357-390 |
2.66e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 39.45 E-value: 2.66e-04
10 20 30
....*....|....*....|....*....|....
gi 768024013 357 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNK 390
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1016-1195 |
2.85e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1016 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAktvsYSSLGRTHHALQNYSQ 1095
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1096 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheAQLSTDYklslfdlqTSSYQAL 1175
Cdd:COG3914 97 ALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRA----------LALNPDF--------AEAYLNL 152
|
170 180
....*....|....*....|
gi 768024013 1176 QRVLVSLGHHDEALAVAERG 1195
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRA 172
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
274-346 |
3.19e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 3.19e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024013 274 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 346
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
65-143 |
3.21e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.12 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 65 SNQAchDGDFHTAIVLYNEALAV--DP--QNCILYsNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLG 140
Cdd:PRK02603 44 SAQA--DGEYAEALENYEEALKLeeDPndRSYILY-NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120
|
...
gi 768024013 141 RHA 143
Cdd:PRK02603 121 EKA 123
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
483-589 |
3.60e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 483 IHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRqelqiSMEVNdrASQASTHGNLAV 562
Cdd:COG3063 1 LYLKLGDLEEAEEYYE------KALELDPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 768024013 563 AYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
804-905 |
3.68e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.52 E-value: 3.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 804 YMALGKYTMAFKCYEEQLdlgQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDrgrAYGNL 883
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFL---KRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPD---ALLKL 73
|
90 100
....*....|....*....|..
gi 768024013 884 GDCYEALGDYEEAIKYYEQYLS 905
Cdd:COG1729 74 GLSYLELGDYDKARATLEELIK 95
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
311-466 |
3.73e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.10 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 311 EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSearelgNMGAVYIAMGDFENAVQCHEQHLKIAKDlgnk 390
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFA------LLGEILLQLGDLDEAIVLLHEALELDPD---- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024013 391 reEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAED 466
Cdd:COG4783 71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
606-707 |
6.53e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 606 SRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYyeqDLALAKDLHDklsqAKAYCNLGLAFK 685
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL---EKALKLDPNN----AEALLNLAELLL 70
|
90 100
....*....|....*....|..
gi 768024013 686 ALLNFSKAEECQKYLLSLAQSL 707
Cdd:COG3063 71 ELGDYDEALAYLERALELDPSA 92
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
966-1190 |
7.15e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 966 LHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQ--IAEETNNPTcQGRAYGNL 1043
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAerIDRALALPD-LAQLYYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1044 GLTYESLGTFERAVvyqeQHLSIAAQMNDLAAKTvsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGL 1123
Cdd:COG4785 80 GVAYDSLGDYDLAI----ADFDQALELDPDLAEA--YNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLNR 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024013 1124 GLSLWASGNLEEAQHQLYRASALFET------IRHEAQLSTDYKLSLFDLQtssyQALQRVLVSLGHHDEALA 1190
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNdperalWLYLAERKLDPEKALALLL----EDWATAYLLQGDTEEARE 216
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
475-613 |
7.25e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.14 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 475 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 549
Cdd:NF040586 521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768024013 550 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQA 613
Cdd:NF040586 601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA 666
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
421-584 |
7.47e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 7.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 421 LELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTH 500
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 501 LCIAQElsdyaaQGRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNH 580
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 768024013 581 LNIA 584
Cdd:COG5010 149 LGTS 152
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
754-826 |
7.56e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 7.56e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024013 754 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQK 826
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
363-467 |
8.75e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 8.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 363 VYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvlelaqelmEKAIEM-----RAY 437
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL------------EKALKLdpnnaEAL 62
|
90 100 110
....*....|....*....|....*....|
gi 768024013 438 AGLGHAARCMQDLERAKQYHEQQLGIAEDL 467
Cdd:COG3063 63 LNLAELLLELGDYDEALAYLERALELDPSA 92
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
392-466 |
8.85e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.29 E-value: 8.85e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024013 392 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELM--EKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 466
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
947-1208 |
1.02e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 43.69 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 947 AHELGEAfnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYhqldlqi 1026
Cdd:COG3899 698 AGERDRA---ARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEAL------- 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1027 aeetnnptcqgraygnlgltyeslgtFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHhaLQNYSQAVMYLQEGLRL 1106
Cdd:COG3899 768 --------------------------LERALAARALAALAALRHGNPPASARAYANLGLLL--LGDYEEAYEFGELALAL 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETI-----RHEAQLSTDYKLSLFDLQTSSYQALQRVLVS 1181
Cdd:COG3899 820 AERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETgdaalALLALAAAAAAAAAAAALAAAAAAAARLLAA 899
|
250 260
....*....|....*....|....*..
gi 768024013 1182 LGHHDEALAVAERGRTRAFADLLVERQ 1208
Cdd:COG3899 900 AAAALAAAAAAAALAAAELARLAAAAA 926
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
301-464 |
1.10e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.10 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 301 LVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQH 380
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 381 LKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElmekaiEMRAYAGLGHAARCMQDLERAKQYHEQQ 460
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 768024013 461 LGIA 464
Cdd:COG5010 149 LGTS 152
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
516-551 |
1.39e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.52 E-value: 1.39e-03
10 20 30
....*....|....*....|....*....|....*.
gi 768024013 516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 551
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
505-626 |
1.44e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.15 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 505 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 576
Cdd:PRK11447 294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 768024013 577 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:PRK11447 374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
581-744 |
1.45e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 581 LNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQD 660
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 661 LALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQ 740
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKE------YYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 768024013 741 LGLA 744
Cdd:COG5010 149 LGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
392-496 |
1.55e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 392 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDlkdra 471
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALDPD----- 83
|
90 100
....*....|....*....|....*
gi 768024013 472 aEGRASSNLGIIHQMKGDYDTALKL 496
Cdd:COG4235 84 -NPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1006-1110 |
1.68e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1006 VYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEqhlSIAAQMNDLAAktvsYSSLGR 1085
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNAEA----LLNLAE 67
|
90 100
....*....|....*....|....*
gi 768024013 1086 THHALQNYSQAVMYLQEGLRLAEQL 1110
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSA 92
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
71-159 |
1.84e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 71 DGDFHTAIVLYNEALAVDPQNCIL---YSNRSAAYMKIQQYDKALD---DAIKARLLNPKWPKAYFRQGVALQYLGRHAD 144
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEafeKLLKRYPDSPKAPDALLKLGLSYLELGDYDK 85
|
90
....*....|....*
gi 768024013 145 ALAAFASGLAQDPKS 159
Cdd:COG1729 86 ARATLEELIKKYPDS 100
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
359-472 |
1.99e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 359 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElmekaiEMRAYA 438
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALALDPD------NPEALY 89
|
90 100 110
....*....|....*....|....*....|....
gi 768024013 439 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAA 472
Cdd:COG4235 90 LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
875-995 |
2.07e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.44 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 875 DRGRAYGNLGDCYEALGDYEEAIKYYeqylsvAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELgeAF 954
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADF------DQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDR----ALEL--DP 138
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 768024013 955 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRAL 995
Cdd:COG4785 139 DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
727-827 |
2.21e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 727 KKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHtqelevyQELSDLPGECRAHGHLAAVYMA 806
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-------KALKLDPNNAEALLNLAELLLE 71
|
90 100
....*....|....*....|.
gi 768024013 807 LGKYTMAFKCYEEQLDLGQKL 827
Cdd:COG3063 72 LGDYDEALAYLERALELDPSA 92
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
635-666 |
2.34e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.73 E-value: 2.34e-03
10 20 30
....*....|....*....|....*....|..
gi 768024013 635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
72-170 |
2.46e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.05 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVAlQYLGRHADALAAfas 151
Cdd:COG4785 121 GDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA-ERKLDPEKALAL--- 196
|
90
....*....|....*....
gi 768024013 152 gLAQDPKSLQLLVGMVEAA 170
Cdd:COG4785 197 -LLEDWATAYLLQGDTEEA 214
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
957-989 |
2.73e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 36.61 E-value: 2.73e-03
10 20 30
....*....|....*....|....*....|...
gi 768024013 957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 989
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
316-434 |
2.76e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 316 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEAR 395
Cdd:COG4235 19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------ADALLDLAEALLAAGDTEEAEELLERALALDPD------NPE 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 768024013 396 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQE-----LMEKAIEM 434
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPAdaparLLEASIAE 130
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
73-149 |
3.22e-03 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 40.44 E-value: 3.22e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024013 73 DFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 149
Cdd:NF040959 120 DYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHF 196
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
875-944 |
3.43e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 3.43e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 875 DRGRAYGNLGDCYEALGDYEEAIKYyeqylsvAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRL 944
Cdd:COG3063 24 DNADALNNLGLLLLEQGRYDEAIAL-------EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
203-615 |
3.71e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.77 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 203 GQELLTAGHHGASVVVLEAALKIGTCSL-------KLRGSVFSALSSAYWSLGNTEKSTGYMQQDLDVAKTLGDQTGECR 275
Cdd:COG3899 752 AEALYLAGRFEEAEALLERALAARALAAlaalrhgNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEAR 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 276 AHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGhvyTAIGDYPNALASHKQCVLLAKQSKDELSEAR 355
Cdd:COG3899 832 ALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAA---AAAAAAAALAAAAAAAARLLAAAAAALAAAA 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 356 ELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRnFDKAMSYHNYVLELAQELMEKAIEMR 435
Cdd:COG3899 909 AAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALA-AAAAAAAAAALAAAAAAAAAAAAAAA 987
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 436 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 515
Cdd:COG3899 988 AAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAA 1067
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAY---QALGAHDRALQHYQNHLNIARELRDIQS 592
Cdd:COG3899 1068 LLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALaaaLAALALAAAARAAAALLLLAAALALALA 1147
|
410 420
....*....|....*....|...
gi 768024013 593 EARALSNLGNFHCSRGEYVQAAP 615
Cdd:COG3899 1148 ALLLLAALLLALALLLLALAALA 1170
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
635-666 |
3.80e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 3.80e-03
10 20 30
....*....|....*....|....*....|..
gi 768024013 635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
612-744 |
4.46e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 612 QAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFS 691
Cdd:COG4235 1 EAIARLRQALAANPN------DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 768024013 692 KAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQLGLA 744
Cdd:COG4235 69 EAEE----LLERALALDPDNP--EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
878-905 |
4.47e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.96 E-value: 4.47e-03
10 20
....*....|....*....|....*...
gi 768024013 878 RAYGNLGDCYEALGDYEEAIKYYEQYLS 905
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
77-185 |
4.67e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 77 AIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 156
Cdd:COG5010 39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
|
90 100
....*....|....*....|....*....
gi 768024013 157 PKSLQLLVGMVEAAMKSPMRDSLEPTYQQ 185
Cdd:COG5010 119 PDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
907-1067 |
4.72e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 907 AQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI 986
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 987 ARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSI 1066
Cdd:COG5010 84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
.
gi 768024013 1067 A 1067
Cdd:COG5010 152 S 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
647-744 |
4.83e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 647 LGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEECQKyllslAQSLNNSQAkfRALGNLGDIFIC 726
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNA--EALLNLAELLLE 71
|
90
....*....|....*...
gi 768024013 727 KKDINGAIKFYEQQLGLA 744
Cdd:COG3063 72 LGDYDEALAYLERALELD 89
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
852-1253 |
5.15e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 41.49 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 852 EAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMG 931
Cdd:COG4995 62 ALALALLAAAALALLLLALALAALALALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAAL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 932 SLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMG 1011
Cdd:COG4995 142 AAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAAL 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1012 EYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQ 1091
Cdd:COG4995 222 LLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALA 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1092 NYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSS 1171
Cdd:COG4995 302 LLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEA 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1172 YQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVLYYSLaagylYSWLL 1251
Cdd:COG4995 382 LLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALLALIEYIILPDRLYAFVQL-----YQLLI 456
|
..
gi 768024013 1252 AP 1253
Cdd:COG4995 457 AP 458
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
1008-1140 |
5.33e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 39.27 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 1008 QQMGEYDTALQYHQLDLQIAEetnNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLAAKTVSysslgrth 1087
Cdd:PRK02603 46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 768024013 1088 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1140
Cdd:PRK02603 108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
851-937 |
5.39e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 851 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVA-QSLNRMQDQAKAYRGLGNGHRA 929
Cdd:COG5010 71 EESLALLEQALQLDP---------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEA 141
|
....*...
gi 768024013 930 MGSLQQAL 937
Cdd:COG5010 142 KAALQRAL 149
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
891-982 |
5.98e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 891 GDYEEAIKYYEQYLSVAQSLNRmqdQAKAYRGLGNGHRAMGSLQQALVCFEKrlvVAHELGEAFNKAQAYGELGSLHSQL 970
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLEL 80
|
90
....*....|..
gi 768024013 971 GNYEQAISCLER 982
Cdd:COG1729 81 GDYDKARATLEE 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
661-823 |
6.09e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 661 LALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQ 740
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 741 LGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQ 820
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
...
gi 768024013 821 LDL 823
Cdd:COG5010 149 LGT 151
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
550-664 |
7.49e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 38.84 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 550 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 628
Cdd:CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 768024013 629 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 664
Cdd:CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
957-990 |
7.50e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 7.50e-03
10 20 30
....*....|....*....|....*....|....
gi 768024013 957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 990
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
394-426 |
7.72e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 7.72e-03
10 20 30
....*....|....*....|....*....|...
gi 768024013 394 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 426
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
447-544 |
8.76e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 447 MQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLHKThlciaqeLSDYAAQGRAYGNMGNAYNA 526
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA-------LKLDPNNAEALLNLAELLLE 71
|
90
....*....|....*...
gi 768024013 527 LGMYDQAVKYHRQELQIS 544
Cdd:COG3063 72 LGDYDEALAYLERALELD 89
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
361-498 |
9.41e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.13 E-value: 9.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 361 GAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLEL----AQELMEKAIemrA 436
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALEDFDRALELdpdyAYAYLNRGI---A 150
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768024013 437 YAGLGHAARCMQDLERAKQYHEQQ------LGIAE-DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHK 498
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDperalwLYLAErKLDPEKALALLLEDWATAYLLQGDTEEARELFK 219
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
323-429 |
9.47e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 9.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024013 323 VYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQChEQHLKIAKDlgnkreEARAYSNLGS 402
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDN------ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 768024013 403 AYHYRRNFDKAMSYHNYVLELAQELME 429
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| |
