|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
474-641 |
1.76e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 82.75 E-value: 1.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 474 ICYERAGQHGKAEEILRQELE-KKETPSLYCLLGDV---LGDH----SCYDKAWELSRyRSARAQRSKALLHLRNKEFQE 545
Cdd:COG0457 16 LAYRRLGRYEEAIEDYEKALElDPDDAEALYNLGLAylrLGRYeealADYEQALELDP-DDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 546 CVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDL 625
Cdd:COG0457 95 ALEDYDKALELDP-DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
|
170
....*....|....*.
gi 767914836 626 RDKYKDVQVLKILVRA 641
Cdd:COG0457 174 ALAALLAAALGEAALA 189
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
502-629 |
5.73e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.43 E-value: 5.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 502 YCLLGDV---LGDH----SCYDKAWELSRyRSARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIR 574
Cdd:COG0457 11 YNNLGLAyrrLGRYeeaiEDYEKALELDP-DDAEALYNLGLAYLRLGRYEEALADYEQALELDP-DDAEALNNLGLALQA 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 767914836 575 LKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKY 629
Cdd:COG0457 89 LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD 143
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
446-641 |
2.33e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.81 E-value: 2.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 446 LASLLFELGCTSSALQIFEK-LEMWEDVV-------ICYERAGQHGKAEEILRQELEKK-ETPSLYCLLGDV---LGDHS 513
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKaLELDPDDAealynlgLAYLRLGRYEEALADYEQALELDpDDAEALNNLGLAlqaLGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 514 ----CYDKAWELsRYRSARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEAL 589
Cdd:COG0457 94 ealeDYDKALEL-DPDDAEALYNLGLALLELGRYDEAIEAYERALELDP-DDADALYNLGIALEKLGRYEEALELLEKLE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 767914836 590 KCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKYKDVQVLKILVRA 641
Cdd:COG0457 172 AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELL 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
527-629 |
1.32e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.49 E-value: 1.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 527 ARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTS 606
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDP-DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100
....*....|....*....|...
gi 767914836 607 TDVGEFSEAIKAYHRLLDLRDKY 629
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDD 109
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
526-636 |
2.05e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.95 E-value: 2.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 526 SARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILT 605
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP-DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
|
90 100 110
....*....|....*....|....*....|.
gi 767914836 606 STDVGEFSEAIKAYHRLLDLRDKYKDVQVLK 636
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
518-626 |
4.54e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.56 E-value: 4.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 518 AWELSRYRSARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQ 597
Cdd:COG3914 69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147
|
90 100
....*....|....*....|....*....
gi 767914836 598 IWENYILTSTDVGEFSEAIKAYHRLLDLR 626
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALELD 176
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
536-628 |
6.80e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.41 E-value: 6.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 536 LHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAfRTLQEALKCNYEHWQIWENYILTSTDVGEFSEA 615
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDP-DNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 767914836 616 IKAYHRLLDLRDK 628
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
474-625 |
1.02e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 474 ICYERAGQHGKAEEILRQELEKKET-PSLYCLLGDVLgdhscydkawelsryrsaraqrskallhLRNKEFQECVECFER 552
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPDnPEAFALLGEIL----------------------------LQLGDLDEAIVLLHE 63
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767914836 553 SVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDL 625
Cdd:COG4783 64 ALELDP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
437-625 |
1.29e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.82 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 437 PPHWAIQRQLASLLFELGCTSSALQIFEKL--------EMWEDVVICYERAGQHGKAEEILRQELEKKET-PSLYCLLGD 507
Cdd:COG2956 39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLlerdpdraEALLELAQDYLKAGLLDRAEELLEKLLELDPDdAEALRLLAE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 508 VLGDHSCYDKAWE-LSRYR-----SARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKA 581
Cdd:COG2956 119 IYEQEGDWEKAIEvLERLLklgpeNAHAYCELAELYLEQGDYDEAIEALEKALKLDP-DCARALLLLAELYLEQGDYEEA 197
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 767914836 582 FRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDL 625
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
441-626 |
2.74e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.86 E-value: 2.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 441 AIQRQLASLLFELGCTSSALQIFEKLEMWEDVVICYERAGQHGKAEEILRQELEKKETPSLYCLLGDVLGDHSCYDKAWE 520
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 521 LSRYRSARAQRSKAL---------------LHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTL 585
Cdd:COG3914 91 LGRYEEALALYRRALalnpdnaealfnlgnLLLALGRLEEALAALRRALALNP-DFAEAYLNLGEALRRLGRLEEAIAAL 169
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 767914836 586 QEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLR 626
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
515-625 |
2.94e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.59 E-value: 2.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 515 YDKAWELSRYRSARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYE 594
Cdd:COG5010 42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP-NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
|
90 100 110
....*....|....*....|....*....|.
gi 767914836 595 HWQIWENYILTSTDVGEFSEAIKAYHRLLDL 625
Cdd:COG5010 121 NPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
525-625 |
6.10e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 6.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 525 RSARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYIL 604
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDP-DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100
....*....|....*....|.
gi 767914836 605 TSTDVGEFSEAIKAYHRLLDL 625
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKL 101
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
476-635 |
8.53e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 8.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 476 YERAGQHGKAEEILRQELEK-KETPSLYCLLGDVL---GDhscYDKAWE-LSRYRSARAQRSKALLHL-----RNKEFQE 545
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALELdPETVEAHLALGNLYrrrGE---YDRAIRiHQKLLERDPDRAEALLELaqdylKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 546 CVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDL 625
Cdd:COG2956 95 AEELLEKLLELDP-DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170
....*....|
gi 767914836 626 RDKYKDVQVL 635
Cdd:COG2956 174 DPDCARALLL 183
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
476-638 |
1.47e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.55 E-value: 1.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 476 YERAGQHGKAEEILRQELEKKET-PSLYCLLGDVL---GDH----SCYDKAWELsRYRSARAQRSKALLHLRNKEFQECV 547
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDnAEALFNLGNLLlalGRLeealAALRRALAL-NPDFAEAYLNLGEALRRLGRLEEAI 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 548 ECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRD 627
Cdd:COG3914 167 AALRRALELDP-DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALAR 245
|
170
....*....|.
gi 767914836 628 KYKDVQVLKIL 638
Cdd:COG3914 246 GPSELSPFALL 256
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
533-711 |
1.94e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 56.28 E-value: 1.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 533 KALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEF 612
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 613 SEAIKAYHRLLDLRDkyKDVQVLKILVRAVIdgmtdRSGDVAtglkgKLQELFGRVTSRVTNDGEIWRLYAHVYgngqsE 692
Cdd:COG2956 93 DRAEELLEKLLELDP--DDAEALRLLAEIYE-----QEGDWE-----KAIEVLERLLKLGPENAHAYCELAELY-----L 155
|
170
....*....|....*....
gi 767914836 693 KPDENEKAFQCLSKAYKCD 711
Cdd:COG2956 156 EQGDYDEAIEALEKALKLD 174
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
485-592 |
2.70e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.11 E-value: 2.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 485 AEEILRQELEKKETPSLYCLLGDVLGDHSCYDKAWELSrYRSARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEA 564
Cdd:COG5010 47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD-PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP-DNPNA 124
|
90 100
....*....|....*....|....*...
gi 767914836 565 WNNLSTSYIRLKQKVKAFRTLQEALKCN 592
Cdd:COG5010 125 YSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
471-590 |
3.56e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.99 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 471 DVVICY----ERAGQHGKAEEILRQELEKKETPSLYCLLGDVLGDHscYDKA------WELSRYRSARAQRSKALLHLRN 540
Cdd:COG3071 194 ELAAAYaralIALGDHDEAERLLREALKRQWDPRLVRLYGRLQGGD--PAKQlkraekWLKKHPNDPDLLLALGRLCLRN 271
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 767914836 541 KEFQECVECFERSVKINPmqNAEAWNNLSTSYIRLKQKVKAFRTLQEALK 590
Cdd:COG3071 272 QLWGKAREYLEAALALRP--SAEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
501-597 |
7.24e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.86 E-value: 7.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 501 LYCLLGDVLGDHSCYDKAWELSRyRSARAQRSKALLHLRNKEFQECVEcFERSVKINPmQNAEAWNNLSTSYIRLKQKVK 580
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDP-DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDP-NNAEALLNLAELLLELGDYDE 77
|
90
....*....|....*..
gi 767914836 581 AFRTLQEALKCNYEHWQ 597
Cdd:COG3063 78 ALAYLERALELDPSALR 94
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
554-629 |
1.05e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.78 E-value: 1.05e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767914836 554 VKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKY 629
Cdd:COG0457 1 LELDP-DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD 75
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
547-625 |
9.06e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 9.06e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767914836 547 VECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDL 625
Cdd:COG4235 3 IARLRQALAANP-NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
560-702 |
2.34e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.10 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 560 QNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKYKDVQVLKILV 639
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767914836 640 RAvidgmtdRSGDVATGLkgklqELFGRVTSRVTNDGEIWRLYAHVYgnGQSEKPDENEKAFQ 702
Cdd:COG4783 82 LL-------KAGDYDEAL-----ALLEKALKLDPEHPEAYLRLARAY--RALGRPDEAIAALE 130
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
437-622 |
9.04e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 9.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 437 PPHWAIQRQLASLLFELGCTSSALQIFEK--------LEMWEDVVICYERAGQHGKAEEILRQELE-KKETPSLYCLLGd 507
Cdd:TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKaaelnpqeIEPALALAQYYLGKGQLKKALAILNEAADaAPDSPEAWLMLG- 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 508 vlgdhscydkawelsryrsaRAQrskallhLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQE 587
Cdd:TIGR02917 609 --------------------RAQ-------LAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKR 660
|
170 180 190
....*....|....*....|....*....|....*
gi 767914836 588 ALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRL 622
Cdd:TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
516-628 |
1.22e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.05 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 516 DKAWELSRYRSARAQRSKALLHLRNKEFQECVECFERSVKINPmQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEH 595
Cdd:COG4785 62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP-DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
|
90 100 110
....*....|....*....|....*....|...
gi 767914836 596 WQIWENYILTSTDVGEFSEAIKAYHRLLDLRDK 628
Cdd:COG4785 141 AYAYLNRGIALYYLGRYELAIADLEKALELDPN 173
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
443-558 |
1.50e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.79 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 443 QRQLASLLFELGCTSSALQIFEKL--------EMWEDVVICYERAGQHGKAEEILRQELEK-KETPSLYCLLGDVLGDHS 513
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKAleldpdnpEAFALLGEILLQLGDLDEAIVLLHEALELdPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 767914836 514 CYDKAWEL------SRYRSARAQRSKALLHLRNKEFQECVECFERSVKINP 558
Cdd:COG4783 87 DYDEALALlekalkLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
466-560 |
2.02e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767914836 466 LEMWEDVVICYERAGQHGKAEEILRQELE-KKETPSLYCLLGDVL---GDH----SCYDKAWELSRyRSARAQRSKALLH 537
Cdd:COG5010 54 FAIESPSDNLYNKLGDFEESLALLEQALQlDPNNPELYYNLALLYsrsGDKdeakEYYEKALALSP-DNPNAYSNLAALL 132
|
90 100
....*....|....*....|...
gi 767914836 538 LRNKEFQECVECFERSVKINPMQ 560
Cdd:COG5010 133 LSLGQDDEAKAALQRALGTSPLK 155
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
559-632 |
3.50e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 3.50e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767914836 559 MQNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKYKDV 632
Cdd:COG5010 51 AKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
527-558 |
8.32e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 8.32e-03
10 20 30
....*....|....*....|....*....|..
gi 767914836 527 ARAQRSKALLHLRNKEFQECVECFERSVKINP 558
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
|