neurobeachin isoform X10 [Homo sapiens]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||||||
DUF4704 | pfam15787 | Neurobeachin/BDCP, DUF4704 alpha solenoid region; This domain of unknown function is found in ... |
467-947 | 0e+00 | ||||||||
Neurobeachin/BDCP, DUF4704 alpha solenoid region; This domain of unknown function is found in eukaryotes on neurobeachin and BEACH domain-containing proteins (BDCPs). Mutations in this proteins are associated with Lipopolysaccharide-responsive and beige-like anchor (LRBA) deficiency. According to structure prediction is adopts an alpha-helical solenoid structure. : Pssm-ID: 464870 Cd Length: 486 Bit Score: 677.08 E-value: 0e+00
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DUF1088 | pfam06469 | Neurobeachin-like, DUF1088; This domain is found in the neurobeachins (NBEAs) and BEACH domain ... |
1966-2132 | 4.79e-98 | ||||||||
Neurobeachin-like, DUF1088; This domain is found in the neurobeachins (NBEAs) and BEACH domain containing proteins (BDCPs). NBEAS are localized near Golgi apparatus and is involved in vesicular trafficking, intracellular transport, membrane dynamics, endosomal recycling, and receptor signalling. BDCPs are associated with lysosome size, apoptosis, autophagy, granule size, or synapse formation. Mutations in this domain have been related to autosomal recessively inherited lipopolysaccharide-responsive beige-like anchor (LRBA) protein deficiency, responsible for common variable immunodeficiency (CVID) and autoimmune lymphoproliferative syndrome (ALPS). NBEAs deficiency may induce spine loss with defects in synaptic efficacy and plasticity, being associated with autism spectrum disorder (ASD) and ASD-related syndromes. : Pssm-ID: 461925 Cd Length: 168 Bit Score: 312.99 E-value: 4.79e-98
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Beach super family | cl10511 | BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in ... |
2286-2392 | 5.40e-65 | ||||||||
BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. The actual alignment was detected with superfamily member smart01026: Pssm-ID: 471984 Cd Length: 280 Bit Score: 222.87 E-value: 5.40e-65
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PH_BEACH | pfam14844 | PH domain associated with Beige/BEACH; This PH domain is found in proteins containing the ... |
2158-2255 | 1.26e-36 | ||||||||
PH domain associated with Beige/BEACH; This PH domain is found in proteins containing the Beige/BEACH domain (pfam02138), it immediately precedes the Beige/BEACH domain. : Pssm-ID: 434260 Cd Length: 99 Bit Score: 134.31 E-value: 1.26e-36
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Laminin_G_3 super family | cl48183 | Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
255-402 | 2.70e-08 | ||||||||
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily. The actual alignment was detected with superfamily member pfam13385: Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 55.08 E-value: 2.70e-08
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Name | Accession | Description | Interval | E-value | ||||||||
DUF4704 | pfam15787 | Neurobeachin/BDCP, DUF4704 alpha solenoid region; This domain of unknown function is found in ... |
467-947 | 0e+00 | ||||||||
Neurobeachin/BDCP, DUF4704 alpha solenoid region; This domain of unknown function is found in eukaryotes on neurobeachin and BEACH domain-containing proteins (BDCPs). Mutations in this proteins are associated with Lipopolysaccharide-responsive and beige-like anchor (LRBA) deficiency. According to structure prediction is adopts an alpha-helical solenoid structure. Pssm-ID: 464870 Cd Length: 486 Bit Score: 677.08 E-value: 0e+00
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DUF1088 | pfam06469 | Neurobeachin-like, DUF1088; This domain is found in the neurobeachins (NBEAs) and BEACH domain ... |
1966-2132 | 4.79e-98 | ||||||||
Neurobeachin-like, DUF1088; This domain is found in the neurobeachins (NBEAs) and BEACH domain containing proteins (BDCPs). NBEAS are localized near Golgi apparatus and is involved in vesicular trafficking, intracellular transport, membrane dynamics, endosomal recycling, and receptor signalling. BDCPs are associated with lysosome size, apoptosis, autophagy, granule size, or synapse formation. Mutations in this domain have been related to autosomal recessively inherited lipopolysaccharide-responsive beige-like anchor (LRBA) protein deficiency, responsible for common variable immunodeficiency (CVID) and autoimmune lymphoproliferative syndrome (ALPS). NBEAs deficiency may induce spine loss with defects in synaptic efficacy and plasticity, being associated with autism spectrum disorder (ASD) and ASD-related syndromes. Pssm-ID: 461925 Cd Length: 168 Bit Score: 312.99 E-value: 4.79e-98
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Beach | smart01026 | Beige/BEACH domain; The BEACH domain was described in the BEIGE protein (D1035670) and in the ... |
2286-2392 | 5.40e-65 | ||||||||
Beige/BEACH domain; The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Pssm-ID: 214982 Cd Length: 280 Bit Score: 222.87 E-value: 5.40e-65
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Beach | pfam02138 | Beige/BEACH domain; |
2287-2392 | 2.97e-64 | ||||||||
Beige/BEACH domain; Pssm-ID: 460459 Cd Length: 277 Bit Score: 220.42 E-value: 2.97e-64
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Beach | cd06071 | BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in ... |
2286-2392 | 8.25e-59 | ||||||||
BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Pssm-ID: 100117 [Multi-domain] Cd Length: 275 Bit Score: 204.78 E-value: 8.25e-59
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PH_BEACH | pfam14844 | PH domain associated with Beige/BEACH; This PH domain is found in proteins containing the ... |
2158-2255 | 1.26e-36 | ||||||||
PH domain associated with Beige/BEACH; This PH domain is found in proteins containing the Beige/BEACH domain (pfam02138), it immediately precedes the Beige/BEACH domain. Pssm-ID: 434260 Cd Length: 99 Bit Score: 134.31 E-value: 1.26e-36
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PH_BEACH | cd01201 | Pleckstrin homology domain in BEACH domain containing proteins; The BEACH domain is present in ... |
2151-2254 | 2.03e-36 | ||||||||
Pleckstrin homology domain in BEACH domain containing proteins; The BEACH domain is present in several eukaroyotic proteins CHS, neurobeachin (Nbea), LRBA (also called BGL, beige-like, or CDC4L), FAN, KIAA1607, and LvsA-LvsF. CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in mammals and beige is the name for the CHS disease in mice. The CHS disease is associated with the presence of giant, perinuclear vesicles (lysosomes, melanosomes, and others) and CHS protein is thought to play an important role in the fusion, fission, or trafficking of these vesicles. All BEACH proteins contain the following domains: PH, BEACH, and WD40. The WD40 domain is involved in mediating protein-protein interactions involved in targeting proteins to subcellular compartments. The combined PH-BEACH motifs may present a single continuous structural unit involved in protein binding. Some members have an additional N-terminal Laminin G-like (LamG) domains Ca++ mediated receptors or an additional C-terminal FYVE zinc-binding domain which targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Pssm-ID: 275391 Cd Length: 112 Bit Score: 134.28 E-value: 2.03e-36
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Laminin_G_3 | pfam13385 | Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
255-402 | 2.70e-08 | ||||||||
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily. Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 55.08 E-value: 2.70e-08
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Name | Accession | Description | Interval | E-value | ||||||||
DUF4704 | pfam15787 | Neurobeachin/BDCP, DUF4704 alpha solenoid region; This domain of unknown function is found in ... |
467-947 | 0e+00 | ||||||||
Neurobeachin/BDCP, DUF4704 alpha solenoid region; This domain of unknown function is found in eukaryotes on neurobeachin and BEACH domain-containing proteins (BDCPs). Mutations in this proteins are associated with Lipopolysaccharide-responsive and beige-like anchor (LRBA) deficiency. According to structure prediction is adopts an alpha-helical solenoid structure. Pssm-ID: 464870 Cd Length: 486 Bit Score: 677.08 E-value: 0e+00
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DUF1088 | pfam06469 | Neurobeachin-like, DUF1088; This domain is found in the neurobeachins (NBEAs) and BEACH domain ... |
1966-2132 | 4.79e-98 | ||||||||
Neurobeachin-like, DUF1088; This domain is found in the neurobeachins (NBEAs) and BEACH domain containing proteins (BDCPs). NBEAS are localized near Golgi apparatus and is involved in vesicular trafficking, intracellular transport, membrane dynamics, endosomal recycling, and receptor signalling. BDCPs are associated with lysosome size, apoptosis, autophagy, granule size, or synapse formation. Mutations in this domain have been related to autosomal recessively inherited lipopolysaccharide-responsive beige-like anchor (LRBA) protein deficiency, responsible for common variable immunodeficiency (CVID) and autoimmune lymphoproliferative syndrome (ALPS). NBEAs deficiency may induce spine loss with defects in synaptic efficacy and plasticity, being associated with autism spectrum disorder (ASD) and ASD-related syndromes. Pssm-ID: 461925 Cd Length: 168 Bit Score: 312.99 E-value: 4.79e-98
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Beach | smart01026 | Beige/BEACH domain; The BEACH domain was described in the BEIGE protein (D1035670) and in the ... |
2286-2392 | 5.40e-65 | ||||||||
Beige/BEACH domain; The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Pssm-ID: 214982 Cd Length: 280 Bit Score: 222.87 E-value: 5.40e-65
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Beach | pfam02138 | Beige/BEACH domain; |
2287-2392 | 2.97e-64 | ||||||||
Beige/BEACH domain; Pssm-ID: 460459 Cd Length: 277 Bit Score: 220.42 E-value: 2.97e-64
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Beach | cd06071 | BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in ... |
2286-2392 | 8.25e-59 | ||||||||
BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Pssm-ID: 100117 [Multi-domain] Cd Length: 275 Bit Score: 204.78 E-value: 8.25e-59
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PH_BEACH | pfam14844 | PH domain associated with Beige/BEACH; This PH domain is found in proteins containing the ... |
2158-2255 | 1.26e-36 | ||||||||
PH domain associated with Beige/BEACH; This PH domain is found in proteins containing the Beige/BEACH domain (pfam02138), it immediately precedes the Beige/BEACH domain. Pssm-ID: 434260 Cd Length: 99 Bit Score: 134.31 E-value: 1.26e-36
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PH_BEACH | cd01201 | Pleckstrin homology domain in BEACH domain containing proteins; The BEACH domain is present in ... |
2151-2254 | 2.03e-36 | ||||||||
Pleckstrin homology domain in BEACH domain containing proteins; The BEACH domain is present in several eukaroyotic proteins CHS, neurobeachin (Nbea), LRBA (also called BGL, beige-like, or CDC4L), FAN, KIAA1607, and LvsA-LvsF. CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in mammals and beige is the name for the CHS disease in mice. The CHS disease is associated with the presence of giant, perinuclear vesicles (lysosomes, melanosomes, and others) and CHS protein is thought to play an important role in the fusion, fission, or trafficking of these vesicles. All BEACH proteins contain the following domains: PH, BEACH, and WD40. The WD40 domain is involved in mediating protein-protein interactions involved in targeting proteins to subcellular compartments. The combined PH-BEACH motifs may present a single continuous structural unit involved in protein binding. Some members have an additional N-terminal Laminin G-like (LamG) domains Ca++ mediated receptors or an additional C-terminal FYVE zinc-binding domain which targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Pssm-ID: 275391 Cd Length: 112 Bit Score: 134.28 E-value: 2.03e-36
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Laminin_G_3 | pfam13385 | Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ... |
255-402 | 2.70e-08 | ||||||||
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily. Pssm-ID: 463865 [Multi-domain] Cd Length: 151 Bit Score: 55.08 E-value: 2.70e-08
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PH-like | cd00900 | Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like ... |
2168-2254 | 7.52e-06 | ||||||||
Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins. Pssm-ID: 275390 Cd Length: 89 Bit Score: 46.24 E-value: 7.52e-06
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Blast search parameters | ||||
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