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Conserved domains on  [gi|767977825|ref|XP_011533438|]
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RCC1 and BTB domain-containing protein 1 isoform X4 [Homo sapiens]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 11474102)

RCC1 (regulator of chromosome condensation) domain-containing protein similar to Arabidopsis UVR8 (UV RESISTANCE LOCUS 8), which plays an important role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway.

Gene Ontology:  GO:0003682|GO:0005085
PubMed:  9510255|18442486

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 13-277 2.17e-68

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 215.61  E-value: 2.17e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  13 LSPQEIASIRKACVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTE 92
Cdd:COG5184   39 STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYY-HSCALKS 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  93 DGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLliKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPR 172
Cdd:COG5184  116 DGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGL--SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPV 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 173 KVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEG 252
Cdd:COG5184  194 QVGG---LSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDG 268

                        250       260
                 ....*....|....*....|....*
gi 767977825 253 LLYAWGANTYGQLGTGNKNNLLSPA 277
Cdd:COG5184  269 TVWCWGDNSYGQLGDGTTTDRSTPV 293
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 13-277 2.17e-68

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 215.61  E-value: 2.17e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  13 LSPQEIASIRKACVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTE 92
Cdd:COG5184   39 STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYY-HSCALKS 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  93 DGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLliKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPR 172
Cdd:COG5184  116 DGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGL--SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPV 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 173 KVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEG 252
Cdd:COG5184  194 QVGG---LSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDG 268

                        250       260
                 ....*....|....*....|....*
gi 767977825 253 LLYAWGANTYGQLGTGNKNNLLSPA 277
Cdd:COG5184  269 TVWCWGDNSYGQLGDGTTTDRSTPV 293
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
199-248 8.49e-14

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 64.46  E-value: 8.49e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 767977825  199 NGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLAL 248
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 13-277 2.17e-68

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 215.61  E-value: 2.17e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  13 LSPQEIASIRKACVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTE 92
Cdd:COG5184   39 STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYY-HSCALKS 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  93 DGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLliKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPR 172
Cdd:COG5184  116 DGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGL--SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPV 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 173 KVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEG 252
Cdd:COG5184  194 QVGG---LSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDG 268

                        250       260
                 ....*....|....*....|....*
gi 767977825 253 LLYAWGANTYGQLGTGNKNNLLSPA 277
Cdd:COG5184  269 TVWCWGDNSYGQLGDGTTTDRSTPV 293
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 34-279 3.19e-65

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 207.52  E-value: 3.19e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  34 ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTEDGVVYAWGHNGYSQLGNGTTN 113
Cdd:COG5184   10 SCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGD-HTCALKADGTVWCWGNNSYGQLGDGTTT 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 114 QGIAPVQVCTnllIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLhiKRVVGIACGQTSS 193
Cdd:COG5184   87 DRTTPVKVPG---LTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGL--SGVVAIAAGGYHT 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 194 MAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVcvNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNL 273
Cdd:COG5184  162 CALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGV--VAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDR 239


                 ....*.
gi 767977825 274 LSPAHI 279
Cdd:COG5184  240 ATPVQV 245
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 34-276 6.72e-65

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 206.75  E-value: 6.72e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  34 ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLeGLCGKKIKSLSYGSGpHVLLSTEDGVVYAWGHNGYSQLGNGTTN 113
Cdd:COG5184  110 SCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQV-DAGLSGVVAIAAGGY-HTCALKSDGTVWCWGANSYGQLGDGTTT 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 114 QGIAPVQVCTnllIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNclhIKRVVGIACGQTSS 193
Cdd:COG5184  188 DRPTPVQVGG---LSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAG---LTGVVAIAAGGSHT 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 194 MAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNL 273
Cdd:COG5184  262 CALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGLSG--VVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDR 339


                 ...
gi 767977825 274 LSP 276
Cdd:COG5184  340 STP 342
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 86-280 5.68e-59

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 191.34  E-value: 5.68e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  86 HVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVctnLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGST 165
Cdd:COG5184    9 HSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRV---PGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 166 ANQPTPRKVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVcVNQIVCGYAHT 245
Cdd:COG5184   86 TDRTTPVKVPG---LTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSG-VVAIAAGGYHT 161

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 767977825 246 LALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIM 280
Cdd:COG5184  162 CALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVG 196
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 37-225 8.51e-49

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 165.15  E-value: 8.51e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825  37 VTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGI 116
Cdd:COG5184  164 LKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSG--VVAVAAGGD-HSCALKSDGTVWCWGSNSSGQLGDGTTTDRA 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 117 APVQVctnLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNclhIKRVVGIACGQTSSMAV 196
Cdd:COG5184  241 TPVQV---AGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPG---LSGVVAVAAGSSHTCAL 314

                        170       180
                 ....*....|....*....|....*....
gi 767977825 197 LDNGEVYGWGYNGNGQLGLGNNGNQLTPV 225
Cdd:COG5184  315 LTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 131-277 1.71e-44

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 153.98  E-value: 1.71e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 131 VEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGN 210
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPG---LSNVVAVAAGGDHTCALKADGTVWCWGNNSY 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767977825 211 GQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPA 277
Cdd:COG5184   78 GQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPV 142
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 186-279 1.00e-24

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 101.21  E-value: 1.00e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977825 186 IACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVcvNQIVCGYAHTLALTDEGLLYAWGANTYGQL 265
Cdd:COG5184    3 VAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSYGQL 80

                         90
                 ....*....|....
gi 767977825 266 GTGNKNNLLSPAHI 279
Cdd:COG5184   81 GDGTTTDRTTPVKV 94
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
199-248 8.49e-14

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 64.46  E-value: 8.49e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 767977825  199 NGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLAL 248
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
146-196 3.70e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 57.14  E-value: 3.70e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 767977825  146 DGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHiKRVVGIACGQTSSMAV 196
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSG-NKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
93-143 1.68e-10

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 55.22  E-value: 1.68e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 767977825   93 DGVVYAWGHNGYSQLGNGTTNQGIAPVQVcTNLLIKQVVEVACGSHHSMAL 143
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKV-EGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
130-159 2.07e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 48.96  E-value: 2.07e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 767977825  130 VVEVACGSHHSMALAADGEVFAWGYNNCGQ 159
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 237-279 6.01e-08

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 53.06  E-value: 6.01e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 767977825 237 QIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279
Cdd:COG5184    2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRV 44
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
235-264 9.95e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 47.03  E-value: 9.95e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 767977825  235 VNQIVCGYAHTLALTDEGLLYAWGANTYGQ 264
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
251-280 4.93e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 42.89  E-value: 4.93e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 767977825  251 EGLLYAWGANTYGQLGTGNKNNLLSPAHIM 280
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVE 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
40-89 6.50e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 42.50  E-value: 6.50e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 767977825   40 NDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGpHVLL 89
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGD-HTVA 49
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
183-212 1.26e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 41.26  E-value: 1.26e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 767977825  183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQ 212
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
76-106 5.65e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 33.94  E-value: 5.65e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 767977825   76 IKSLSYGSGpHVLLSTEDGVVYAWGHNGYSQ 106
Cdd:pfam13540   1 VVSVAAGDN-HTLALTSDGRVYCWGDNSYGQ 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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