|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
283-996 |
3.73e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 3.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 283 LQAKLSSFEET-NKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQ 361
Cdd:TIGR02168 237 LREELEELQEElKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL----A 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 362 SLFSEVASLKEQMHKSRflSQVVEDSEptrnqNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK 441
Cdd:TIGR02168 313 NLERQLEELEAQLEELE--SKLDELAE-----ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 442 DQIAyVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDA--LRLREANEEIEKLKLEIEKLKAESGNPSIRQK 519
Cdd:TIGR02168 386 SKVA-QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeeAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 520 IRLKDKAADAKKIQDLERQVKEMEGILK---------RRYPNSLPALILAASAAGDTVD--KNTVEFMEKRIKKLEADLE 588
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDslerlqenlEGFSEGVKALLKNQSGLSGILGvlSELISVDEGYEAAIEAALG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 589 G--------KDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDS-PRIKALEKELDDIKEAHQITVRNLEAE 659
Cdd:TIGR02168 545 GrlqavvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNiEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 660 IDVLKH-QNAELDVKKNDKD------DEDFQSIEFQVEQAHAKAKLVRLNeelaaKKREIQDLSKTVERLQ------KDR 726
Cdd:TIGR02168 625 VLVVDDlDNALELAKKLRPGyrivtlDGDLVRPGGVITGGSAKTNSSILE-----RRREIEELEEKIEELEekiaelEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 727 RMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSK---LYQPHTFTDSHVSEVLQENYRLKNELEGLISEKNE 803
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 804 LKMKSEAVMNQFENSMRRVKEDTAAhIASLKASHQREIEKLLcqnaveNSSSKVAELNRKIATQEVLIRHFQSQVNELQS 883
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREA-LDELRAELTLLNEEAA------NLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 884 KQESLVVS----EVREEILQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEmrhaqreqelqqiiqqtHQVVETEQ 959
Cdd:TIGR02168 853 DIESLAAEieelEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE-----------------SKRSELRR 915
|
730 740 750
....*....|....*....|....*....|....*..
gi 767942266 960 NKEvEKWKRLAQLKNReLEKFRTELDSILDVLRELHR 996
Cdd:TIGR02168 916 ELE-ELREKLAQLELR-LEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
400-936 |
3.19e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 400 AELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEEThKQEISRLQKRLqwyAEN 479
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-EERLEELEEEL---AEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 480 QELLDKDALRLREANEEIEKLKLEIEKLKAESGNpsiRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLPALIL 559
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAE---AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 560 AASAAGDtvdkntvefmEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPR-IKAL 638
Cdd:COG1196 406 EEAEEAL----------LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEeAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 639 EKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKT 718
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 719 VERLQKDRRmmLSNQNSKGREE----MSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNEL 794
Cdd:COG1196 556 DEVAAAAIE--YLKAAKAGRATflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 795 EGL-ISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRH 873
Cdd:COG1196 634 AALrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767942266 874 FQSQVNELQSKQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVgLEKKIKQMEMR 936
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE-LERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-727 |
5.00e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 5.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 228 KRVQEAEDKWRGAQALIEQIKATfSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLssfEETNKKQRwlhfgeaad 307
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAE-LEELEAELEELEAELAELEAELEELRLELEELELEL---EEAQAEEY--------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 308 pVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQSLFSEVASLKEQMHKSRFLSQVVEDS 387
Cdd:COG1196 292 -ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 388 EPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEIS 467
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 468 RLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKD-------KAADAKKIQDLERQVK 540
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYegflegvKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 541 EMEGILKRRYPNSLPALILAASAAGDTVDKNTvefMEKRIKKLEADLEGKDEDAkkSLRTMEQQFQKMKIQYEQRLEQQE 620
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEV---AAAAIEYLKAAKAGRATFL--PLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 621 QLLACKLNQHDsprikALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVR 700
Cdd:COG1196 602 DLVASDLREAD-----ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500
....*....|....*....|....*..
gi 767942266 701 LNEELAAKKREIQDLSKTVERLQKDRR 727
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEE 703
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
312-727 |
3.35e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQ--QENERLYNQVKDLQEQNKKNEERMfKENQSLFSEVASLKEQMHKSRF-LSQVVEDSE 388
Cdd:COG4717 109 AELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERL-EELRELEEELEELEAELAELQEeLEELLEQLS 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 389 PTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQ------------------IAYVTGE 450
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaallaLLGLGGS 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 451 KLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAK 530
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 531 KIQDLERQVKEMEgilkrrypnslpalilaasaagdtvDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKI 610
Cdd:COG4717 348 ELQELLREAEELE-------------------------EELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKE 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 611 QYEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAhqitVRNLEAEIDVLKHQNAELDVKKND-KDDEDFQSIEFQV 689
Cdd:COG4717 403 ELEELEEQLEELLGELEELLEALDEEELEEELEELEEE----LEELEEELEELREELAELEAELEQlEEDGELAELLQEL 478
|
410 420 430
....*....|....*....|....*....|....*...
gi 767942266 690 EQAhaKAKLVRLNEELAAKKREIQDLSKTVERLQKDRR 727
Cdd:COG4717 479 EEL--KAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
395-736 |
3.78e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 395 FTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEkLYEikileetHKQEISRLQKRLQ 474
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE-LYA-------LANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 475 WYAENQELLDKDalrLREANEEIEKLKLEIEKLKAEsgnpsirqkirlkdKAADAKKIQDLERQVKEMEGILKRrypnsl 554
Cdd:TIGR02168 306 ILRERLANLERQ---LEELEAQLEELESKLDELAEE--------------LAELEEKLEELKEELESLEAELEE------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 555 palilaasaagdtvdkntvefmekrikkleadLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcklnqhdspR 634
Cdd:TIGR02168 363 --------------------------------LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN---------E 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 635 IKALEKELDDIKEAHQITVRNLEAEIDVLkhQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQD 714
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340
....*....|....*....|..
gi 767942266 715 LSKTVERLQKDRRMMLSNQNSK 736
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENL 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-584 |
5.20e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 5.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 268 QQEKELFKLNQDNYILQAKLSS-FEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEqetLLQGYQQENERLYNQVKDLQ 346
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSlQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 347 --EQNKKNEERMFKENQSlfsEVASLKEQMHKSRFLSQVVEDSE-PTRNQNFTDLLAELRMAQKEKDSLLEDI----KRL 419
Cdd:TIGR02169 748 slEQEIENVKSELKELEA---RIEELEEDLHKLEEALNDLEARLsHSRIPEIQAELSKLEEEVSRIEARLREIeqklNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 420 KQDKQALEVDFEKMKKERDQAKDQIAYVtGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALR----LREANE 495
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSI-EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEleaqLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 496 EIEKLKLEIEKLKAesgnpsirqkiRLKDKAAdakKIQDLERQVKEMEGILKRRYPNSLPALILaasaagDTVDKNtVEF 575
Cdd:TIGR02169 904 KIEELEAQIEKKRK-----------RLSELKA---KLEALEEELSEIEDPKGEDEEIPEEELSL------EDVQAE-LQR 962
|
....*....
gi 767942266 576 MEKRIKKLE 584
Cdd:TIGR02169 963 VEEEIRALE 971
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
397-593 |
6.93e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 397 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEvdfekmkkERDQAKDQIAYVTGEklyEIKIleETHKQEISRLQKRLqwy 476
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQ--------ERREALQRLAEYSWD---EIDV--ASAEREIAELEAEL--- 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 477 aenqELLDKDALRLREANEEIEKLKLEIEKLKaesgnpsiRQKIRLKDKAADA-KKIQDLERQVKEMEGILKRRYPNSLP 555
Cdd:COG4913 678 ----ERLDASSDDLAALEEQLEELEAELEELE--------EELDELKGEIGRLeKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767942266 556 ALILA-----ASAAGDTVDKNTVEFMEKRIKKLEADLEGKDED 593
Cdd:COG4913 746 ELRALleerfAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
290-886 |
2.31e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.56 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 290 FEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKneerMFKENQSLFSEVAS 369
Cdd:pfam05483 84 YKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKD----LIKENNATRHLCNL 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 370 LKEQMHKSRFLSQVVEDSEPTRNQNFTDL--------LAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK 441
Cdd:pfam05483 160 LKETCARSAEKTKKYEYEREETRQVYMDLnnniekmiLAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKE 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 442 DQIAYV------TGEKLYEIKILEETHKQEISRLQKRLQWYAENqelldkdalrLREANEEIEKLKLEIEKLKAESGNPS 515
Cdd:pfam05483 240 KQVSLLliqiteKENKMKDLTFLLEESRDKANQLEEKTKLQDEN----------LKELIEKKDHLTKELEDIKMSLQRSM 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 516 IRQKIRLKDKAADAKKIQDL-ERQVKEMEGILKRRYPNSLPALILAASAAGDT----VDKNTVEFMEKRIKKLEADLEGK 590
Cdd:pfam05483 310 STQKALEEDLQIATKTICQLtEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEellrTEQQRLEKNEDQLKIITMELQKK 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 591 DEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLK----HQ 666
Cdd:pfam05483 390 SSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseeHY 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 667 NAELDVKKNDKDDEDFQSIEFQV--------------EQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQkDRRMMLSN 732
Cdd:pfam05483 470 LKEVEDLKTELEKEKLKNIELTAhcdklllenkeltqEASDMTLELKKHQEDIINCKKQEERMLKQIENLE-EKEMNLRD 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 733 QNSKGREEMSAKRAK-KDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNeLEGLISEKNELKMKSEAV 811
Cdd:pfam05483 549 ELESVREEFIQKGDEvKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKN-IEELHQENKALKKKGSAE 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 812 MNQFE------NSMRRVKEDTAAHIASLKASHQREIE--KLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQS 883
Cdd:pfam05483 628 NKQLNayeikvNKLELELASAKQKFEEIIDNYQKEIEdkKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVA 707
|
...
gi 767942266 884 KQE 886
Cdd:pfam05483 708 LME 710
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
398-669 |
2.37e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 398 LLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIayvtgeklyeikileETHKQEISRLQKRLQWYA 477
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---------------AALERRIAALARRIRALE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 478 EnqelldkdalRLREANEEIEKLKLEIEKLKaesgnpsirqkirlkdkaadaKKIQDLERQVKEMEGILKRRYPNSLPAL 557
Cdd:COG4942 76 Q----------ELAALEAELAELEKEIAELR---------------------AELEAQKEELAELLRALYRLGRQPPLAL 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 558 ILAASAAGDTVD-----KNTVEFMEKRIKKLEADLEGKD------EDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcK 626
Cdd:COG4942 125 LLSPEDFLDAVRrlqylKYLAPARREQAEELRADLAELAalraelEAERAELEALLAELEEERAALEALKAERQKLLA-R 203
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 767942266 627 LNQhdspRIKALEKELDDIKEAhqitVRNLEAEIDVLKHQNAE 669
Cdd:COG4942 204 LEK----ELAELAAELAELQQE----AEELEALIARLEAEAAA 238
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
215-990 |
2.68e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 215 YCGENKEKKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLSSFEETN 294
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 295 KKQRwlhFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEermfkenqslfSEVASLKEQM 374
Cdd:pfam02463 272 KENK---EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE-----------KELKKEKEEI 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 375 HKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYE 454
Cdd:pfam02463 338 EELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 455 IKILEETHKQEISRLqkrlqwyAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKirLKDKAADAKKIQD 534
Cdd:pfam02463 418 EDLLKEEKKEELEIL-------EEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK--ETQLVKLQEQLEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 535 LERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQfQKMKIQYEQ 614
Cdd:pfam02463 489 LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD-EVEERQKLV 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 615 RLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHA 694
Cdd:pfam02463 568 RALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESG 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 695 KAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHT 774
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 775 FTDSHVSEVLQENYRLK-NELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIEKLLCQNAVENS 853
Cdd:pfam02463 728 QEAQDKINEELKLLKQKiDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALE 807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 854 SSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQM 933
Cdd:pfam02463 808 EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 767942266 934 EMrHAQREQELQQIIQQTHQVVETEQNKEVEKWKRLAQLKNRELEKFRTELDSILDV 990
Cdd:pfam02463 888 LE-SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLE 943
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
397-654 |
3.24e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 397 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQKRLQWY 476
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 477 AENQELLDKdalRLREANEEIEKLKLEIEKLKAESGNPSIRqKIRLKDKAADAKKIQDLERQ------------------ 538
Cdd:TIGR02169 314 ERELEDAEE---RLAKLEAEIDKLLAEIEELEREIEEERKR-RDKLTEEYAELKEELEDLRAeleevdkefaetrdelkd 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 539 -VKEMEGILKRRYP---NSLPALILAASAAGDTVD-KNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEqQFQKMKIQYE 613
Cdd:TIGR02169 390 yREKLEKLKREINElkrELDRLQEELQRLSEELADlNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE-QLAADLSKYE 468
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 767942266 614 QRLEQQEQllacKLNQHDSpRIKALEKELdDIKEAHQITVR 654
Cdd:TIGR02169 469 QELYDLKE----EYDRVEK-ELSKLQREL-AEAEAQARASE 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
312-522 |
3.31e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQN---------------------KKNEERMFKENQSLFSEVASL 370
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaalarriraleqelaaleaelAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 371 KEQMHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE 450
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942266 451 KLyEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRL 522
Cdd:COG4942 187 RA-ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
399-830 |
3.54e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 399 LAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIayvtgeKLYEIKILEETHKQEISRLQKRLQWYAE 478
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL------EKLEKLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 479 NQELLDKDALRLREANEEIEKLKLEIEKLKAE----SGNPSIRQKIRLKDKAADAK------------------KIQDLE 536
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEEleelLEQLSLATEEELQDLAEELEelqqrlaeleeeleeaqeELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 537 RQVKEMEG----------ILKRRYPNSLPALILAASAAGDTVDKNTVEFMEK---RIKKLEADLEGKDEDAKKSLRTMEQ 603
Cdd:COG4717 227 EELEQLENeleaaaleerLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 604 QFQKMKIQYEQRLEQQEQLLACKLNQHDSP-RIKALEKELDDIKEAH-QITVRNLEAEIDVLKHQNAELDVKKNDKDDED 681
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPeELLELLDRIEELQELLrEAEELEEELQLEELEQEIAALLAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 682 FQSIEFQVEQAHA-KAKLVRLNEELAAKKREIQDLSKTVERLQkdrrmmLSNQNSKGREEMSAKRAKKDVLHSSKGNANS 760
Cdd:COG4717 387 LRAALEQAEEYQElKEELEELEEQLEELLGELEELLEALDEEE------LEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 761 FPGTLDsklyqphtfTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVmnqfENSMRRVKEDTAAHI 830
Cdd:COG4717 461 ELEQLE---------EDGELAELLQELEELKAELRELAEEWAALKLALELL----EEAREEYREERLPPV 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
312-994 |
3.94e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 391
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 392 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKlyEIKILE-ETHKQEISRLQ 470
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK--EDKALEiKKQEWKLEQLA 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 471 KRLQwyAENQELLDKDAlRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMeGILKRRY 550
Cdd:TIGR02169 462 ADLS--KYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL-GSVGERY 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 551 pnsLPALILAASA-------AGDTVDKNTVEFMEKR------------IKKLEADLEGKDEDAKK----SLRTMEQQFQK 607
Cdd:TIGR02169 538 ---ATAIEVAAGNrlnnvvvEDDAVAKEAIELLKRRkagratflplnkMRDERRDLSILSEDGVIgfavDLVEFDPKYEP 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 608 MKIQYEQRLEQQEQLLACKlNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDdedfqsiEF 687
Cdd:TIGR02169 615 AFKYVFGDTLVVEDIEAAR-RLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLE-------GL 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 688 QVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMmLSNQNSKGREEMSAKRAKKDVLhsskgnansfpgtlds 767
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ-LEQEEEKLKERLEELEEDLSSL---------------- 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 768 klyqphtftdshvSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVK-EDTAAHIASLKASHQREiekllc 846
Cdd:TIGR02169 750 -------------EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRI------ 810
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 847 qnavensSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLV--VSEVREEI--LQKEITKLLEELREAKENHTPEMKH 922
Cdd:TIGR02169 811 -------EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeqIKSIEKEIenLNGKKEELEEELEELEAALRDLESR 883
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767942266 923 FVGLEKKIKQME--MRHAQREQElqqiiqqthqvvetEQNKEVEKWKRLAQLKNRELEKFRTELDSILDVLREL 994
Cdd:TIGR02169 884 LGDLKKERDELEaqLRELERKIE--------------ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
312-729 |
3.99e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQnKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 391
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL-EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 392 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQK 471
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 472 RLQWYAENQELLDKDALRLREAN---EEIEKLKLEIEKLKAesgNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILKR 548
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNivvEDDEVAAAAIEYLKA---AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 549 RYPN---SLPALILAASAAGDTVDKNTVEFMEKRIKKLEADL-EGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLA 624
Cdd:COG1196 605 ASDLreaDARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLrEVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 625 CKlnqhdspRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEE 704
Cdd:COG1196 685 AE-------RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
|
410 420
....*....|....*....|....*
gi 767942266 705 LAAkkrEIQDLSKTVERLQKDRRMM 729
Cdd:COG1196 758 EPP---DLEELERELERLEREIEAL 779
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
279-505 |
4.46e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 279 DNYILQAKLSSFEETNKKQRWLhfgeaadpvtGEKLKQIQKEIQEQETLLQGYQQENerlynQVKDLQEQNKKNEERMfk 358
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFL----------EEQLPELRKELEEAEAALEEFRQKN-----GLVDLSEEAKLLLQQL-- 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 359 enQSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQkekdsLLEDIKRLKQDKQALEVDFEKMKKERD 438
Cdd:COG3206 222 --SELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQ-----LRAQLAELEAELAELSARYTPNHPDVI 294
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767942266 439 QAKDQIAYVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIE 505
Cdd:COG3206 295 ALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
264-917 |
9.57e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 9.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 264 ELKKQQEK-ELFKlnqdnyilqaKLSSFEETNKKQRWLHfgeaadpvtgeKLKQIQKEIQEQETLLQGYQQENERLYNQV 342
Cdd:COG1196 204 PLERQAEKaERYR----------ELKEELKELEAELLLL-----------KLRELEAELEELEAELEELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 343 KDLQEQNKKNEERMFKENQSLfsevaslkeqmhksrflsqvvedseptrnqnfTDLLAELRMAQKEKDSLLEDIKRLKQD 422
Cdd:COG1196 263 AELEAELEELRLELEELELEL--------------------------------EEAQAEEYELLAELARLEQDIARLEER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 423 KQALEVDFEKMKKERDQAKDQIAyvtgeklyEIKILEETHKQEISRLQKRLqwyAENQELLDKDALRLREANEEIEKLKL 502
Cdd:COG1196 311 RRELEERLEELEEELAELEEELE--------ELEEELEELEEELEEAEEEL---EEAEAELAEAEEALLEAEAELAEAEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 503 EIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTvefMEKRIKK 582
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE---EEAELEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 583 LEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSP---RIKALEKELDDIKEAHQITVRNLEAE 659
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLegvKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 660 IDVLKHQNAELDVKKNDKDDEDFQS-IEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGR 738
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAaIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 739 EEMSAKRAkKDVLHSSKGNANSFPGTLDSKLYQphTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENS 818
Cdd:COG1196 617 VLGDTLLG-RTLVAARLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 819 MRRvkEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVnELQSKQESLVVSEVREEI- 897
Cdd:COG1196 694 ELE--EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE-ALEELPEPPDLEELERELe 770
|
650 660
....*....|....*....|....*...
gi 767942266 898 -LQKEITKL-------LEELREAKENHT 917
Cdd:COG1196 771 rLEREIEALgpvnllaIEEYEELEERYD 798
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
401-556 |
1.25e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 401 ELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQKRLQWYaenQ 480
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARL---E 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 481 ELLDKDALRLREANEEIEKLKLEIEKLKAESGnpsiRQKIRLKDKAADAK-KIQDLERQVKEMEG---ILKRRyPNSLPA 556
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRAEAAALLEALE----EELEALEEALAEAEaALRDLRRELRELEAeiaSLERR-KSNIPA 440
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
487-724 |
1.41e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 487 ALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILKRrypnslpalilaasaagd 566
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA------------------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 567 tvdkntvefMEKRIKKLEADLegkdEDAKKSLRTMEQQFQKMkIQYEQRLEQQEQLLAcKLNQHDSPRIKALEKELDDIK 646
Cdd:COG4942 81 ---------LEAELAELEKEI----AELRAELEAQKEELAEL-LRALYRLGRQPPLAL-LLSPEDFLDAVRRLQYLKYLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 647 EAHQITVRNLEAEIDVLKHQNAELDVKKNDK----DDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERL 722
Cdd:COG4942 146 PARREQAEELRADLAELAALRAELEAERAELeallAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
..
gi 767942266 723 QK 724
Cdd:COG4942 226 EA 227
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
334-977 |
1.79e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 334 ENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNftdllaELRMAQKEKDSll 413
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD------ELKKAEEKKKA-- 1292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 414 EDIKRLKQDKQAlevdfEKMKKERDQAKDqiAYVTGEKLYEIKILEETHKQEISRLQKRLQwYAENQELLDKDALRLREA 493
Cdd:PTZ00121 1293 DEAKKAEEKKKA-----DEAKKKAEEAKK--ADEAKKKAEEAKKKADAAKKKAEEAKKAAE-AAKAEAEAAADEAEAAEE 1364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 494 NEEIEKLKLEIEKLKAEsgnpSIRQKIRLKDKAADAKKiqDLERQVKEMEGILKRRypnslpalilAASAAGDTVDKNTV 573
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKAD----AAKKKAEEKKKADEAKK--KAEEDKKKADELKKAA----------AAKKKADEAKKKAE 1428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 574 EFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALE--KELDDIKEAHQI 651
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEakKKADEAKKAAEA 1508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 652 TVRNLEAEIDVLKHQNAELdvkknDKDDEDFQSIEFQVEQAHAKAKLVRLNEELaaKKREIQDLSKTVERLQKDRRMMLS 731
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEA-----KKAEEAKKADEAKKAEEKKKADELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALR 1581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 732 N-QNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYqphtftdshvSEVLQENYRLKNELEGLISEKNELKMKSEA 810
Cdd:PTZ00121 1582 KaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK----------AEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 811 VmnqfensmRRVKEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVV 890
Cdd:PTZ00121 1652 L--------KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 891 SEVREEILQKEITKLLEELREAKEnhtpEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQthqVVETEQNKEVEKWKRLA 970
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAE----EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA---VIEEELDEEDEKRRMEV 1796
|
....*..
gi 767942266 971 QLKNREL 977
Cdd:PTZ00121 1797 DKKIKDI 1803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
393-996 |
1.94e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 393 QNFTDLLAELRmaQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyVTGEKLYEIKILEETHKQEISRLQKR 472
Cdd:TIGR02168 213 ERYKELKAELR--ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQ-ELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 473 LQwyaenqelldkdalrlrEANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILkrrypn 552
Cdd:TIGR02168 290 LY-----------------ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL------ 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 553 slpalilaasaagdTVDKNTVEFMEKRIKKLEADLEgkdeDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcklnqhds 632
Cdd:TIGR02168 347 --------------EELKEELESLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNN-------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 633 pRIKALEKELDDIKEAHQITVRNLEAEIDVLkhQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREI 712
Cdd:TIGR02168 401 -EIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 713 QDLSKTVERLQKDRRMMLSNQNskgrEEMSAKRAKKDVLHSSKGNANSFP---------------------GTLDSKL-- 769
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGvlselisvdegyeaaieaalgGRLQAVVve 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 770 -----------YQPHTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKE------------DT 826
Cdd:TIGR02168 554 nlnaakkaiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddlDN 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 827 AAHIASLKASHQREIEK---------------LLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESlvvs 891
Cdd:TIGR02168 634 ALELAKKLRPGYRIVTLdgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE---- 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 892 evreeiLQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEMRHAQREQEL---QQIIQQTHQVVETEQNKEVEKWKR 968
Cdd:TIGR02168 710 ------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELtelEAEIEELEERLEEAEEELAEAEAE 783
|
650 660 670
....*....|....*....|....*....|....
gi 767942266 969 LAQLK------NRELEKFRTELDSILDVLRELHR 996
Cdd:TIGR02168 784 IEELEaqieqlKEELKALREALDELRAELTLLNE 817
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
245-992 |
2.32e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 245 EQIKATFSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLSSFEETNKKqrwLHFGEAADPVTGEKLKQIQKEIQEQ 324
Cdd:TIGR00618 179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH---LREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 325 ---ETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKE-------------------NQSLFSEVASLKEQMHKSRFLSQ 382
Cdd:TIGR00618 256 lkkQQLLKQLRARIEELRAQEAVLEETQERINRARKAAplaahikavtqieqqaqriHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 383 VVEDSEPTRNQNFTDLLAELRMAQK------------EKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE 450
Cdd:TIGR00618 336 QQSSIEEQRRLLQTLHSQEIHIRDAhevatsireiscQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 451 KLYEIKI---LEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAesgnpsiRQKIRLKDKAA 527
Cdd:TIGR00618 416 TSAFRDLqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT-------KEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 528 DAKKIQDLERQvKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQK 607
Cdd:TIGR00618 489 KAVVLARLLEL-QEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQE 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 608 MkIQYEQRLEQQEQLLACKLNQhdsprikaLEKELDDIKEAHQitvRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIE- 686
Cdd:TIGR00618 568 I-QQSFSILTQCDNRSKEDIPN--------LQNITVRLQDLTE---KLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLq 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 687 -FQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRmmlsnqnskgreemsaKRAKKDVLHSSKGNANSFPGTL 765
Cdd:TIGR00618 636 qCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLAS----------------RQLALQKMQSEKEQLTYWKEML 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 766 DSKLYQPHTftdshVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASlkaSHQREIEKLL 845
Cdd:TIGR00618 700 AQCQTLLRE-----LETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTE---AHFNNNEEVT 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 846 cqnAVENSSSKVAELNRKIATQevlIRHFQSQVNELQSKQEslvvsEVREEILQKEITKLLEELREAKENhtpEMKHFVG 925
Cdd:TIGR00618 772 ---AALQTGAELSHLAAEIQFF---NRLREEDTHLLKTLEA-----EIGQEIPSDEDILNLQCETLVQEE---EQFLSRL 837
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767942266 926 LEKKIKQMEMRHAQREQELQQIIQQTHQVVETEQNKEVEKWKRLAQLKNR----ELEKFRTELDSILDVLR 992
Cdd:TIGR00618 838 EEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQfdgdALIKFLHEITLYANVRL 908
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
400-978 |
2.75e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 400 AELRMAQKEKDSLLEDIKRLKQDKQALEVdfeKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRlqkRLQWYAEN 479
Cdd:PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEARKAEDA---RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK---KAEAARKA 1184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 480 QELLDKDALRLREANEEIEKL-KLEIEKLKAESGNPSIRQKIRLKDKAADAKK-IQDLERQVKEMEGILKRRYPNSLPAL 557
Cdd:PTZ00121 1185 EEVRKAEELRKAEDARKAEAArKAEEERKAEEARKAEDAKKAEAVKKAEEAKKdAEEAKKAEEERNNEEIRKFEEARMAH 1264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 558 ILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSlrtmeqqfQKMKIQYEQRLEQQEqllACKLNQHDSPRIKA 637
Cdd:PTZ00121 1265 FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA--------DEAKKKAEEAKKADE---AKKKAEEAKKKADA 1333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 638 LEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEdfqsiEFQVEQAHAKAKLVRLNEELAAKKREIQDLSK 717
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA-----KKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 718 TVERLQKDRRMMlSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKlyqphtftdshvSEVLQENYRLKNELEGL 797
Cdd:PTZ00121 1409 ELKKAAAAKKKA-DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK------------AEEAKKKAEEAKKADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 798 iSEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIE-KLLCQNAVENSSSKVAELNRKiaTQEVLIRHFQS 876
Cdd:PTZ00121 1476 -KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEeAKKADEAKKAEEAKKADEAKK--AEEKKKADELK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 877 QVNELQSKQESLVVSEVREEILQKEIT-KLLEELREAKENHTPEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQTHQV- 954
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMAlRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEk 1632
|
570 580
....*....|....*....|....*.
gi 767942266 955 --VETEQNKEVEKWKRLAQLKNRELE 978
Cdd:PTZ00121 1633 kkVEQLKKKEAEEKKKAEELKKAEEE 1658
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
312-521 |
2.83e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 391
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE-LEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 392 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYV----TGEKLYEIKILEETHKQEIS 467
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkySEEEYEELREEYLELSRELA 676
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767942266 468 RLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKL-KAESGNPSIRQKIR 521
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLeKALERVEELREKVK 731
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
408-628 |
5.32e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 408 EKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK--DQIAyVTGEKLYEIKILEETHKQEISRLQ--KRLQWYAENQELL 483
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIEllEPIR-ELAERYAAARERLAELEYLRAALRlwFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 484 DKDALRLREANEEIEKLKLEIEKLKAEsgnpsiRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLpALILAASA 563
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREE------LDELEAQIRGNGGDRLEQLEREIERLERELEERERRRA-RLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767942266 564 AGDTVDKNTVEF--MEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLN 628
Cdd:COG4913 371 LGLPLPASAEEFaaLRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
267-548 |
5.84e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 267 KQQEKELFKLNQDNYILQaklssfEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQ 346
Cdd:TIGR02168 694 AELEKALAELRKELEELE------EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 347 EQNKKNEE---RMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDK 423
Cdd:TIGR02168 768 ERLEEAEEelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 424 QALEVDFEKMKKERDQAKDQIAYVTgEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLR----EANEEIEK 499
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELE-SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleELREKLAQ 926
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 767942266 500 LKLEIEKLKAESGNpsIRQKIR----------LKDKAADAKKIQDLERQVKEMEGILKR 548
Cdd:TIGR02168 927 LELRLEGLEVRIDN--LQERLSeeysltleeaEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
530-844 |
7.16e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 7.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 530 KKIQDLERQVKEMEgilkrrypnslpALILAASAAGDTVDK--NTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQK 607
Cdd:TIGR02168 677 REIEELEEKIEELE------------EKIAELEKALAELRKelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 608 MKIQYEQ------RLEQQEQLLACKLNQHDSP------RIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKN 675
Cdd:TIGR02168 745 LEERIAQlskeltELEAEIEELEERLEEAEEElaeaeaEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 676 DKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRmMLSNQNSKGREEMSAKRAKKDVLHSSK 755
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-ALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 756 GNANSFPGTLDSKLyqpHTFTDSHVSEVLQENyRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKa 835
Cdd:TIGR02168 904 RELESKRSELRREL---EELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE- 978
|
....*....
gi 767942266 836 shqREIEKL 844
Cdd:TIGR02168 979 ---NKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
312-914 |
7.97e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 7.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENErlynQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKsrfLSQVVEDSEPTR 391
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTE----NIEELIKEKEKELEEVLREINEISSELPELREELEK---LEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 392 NqnftdllaELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVT-----GEKLYEIKILEETHKQEI 466
Cdd:PRK03918 238 E--------EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelkekAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 467 SRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKaesgnpsiRQKIRLKDkaaDAKKIQDLERQVKEMEGIL 546
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE--------KRLEELEE---RHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 547 KRRYPNS---LPALILAASAAgdtvdKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLL 623
Cdd:PRK03918 379 KRLTGLTpekLEKELEELEKA-----KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 624 ACKLNQhDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSiEFQVEQAHAKAKLVR-LN 702
Cdd:PRK03918 454 LEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLK-KYNLEELEKKAEEYEkLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 703 EELAAKKREIQDLSKTVERLQ--KDRRMMLSNQNSKGREEmsakraKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHV 780
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLEelKKKLAELEKKLDELEEE------LAELLKELEELGFESVEELEERLKELEPFYNEYL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 781 sEVLQENYRLKNELEGLISEKNELKMKSEavmnqfensmrrvkedtaahiaslkashqrEIEKLLcqNAVENSSSKVAEL 860
Cdd:PRK03918 606 -ELKDAEKELEREEKELKKLEEELDKAFE------------------------------ELAETE--KRLEELRKELEEL 652
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 767942266 861 NRKIATQEV--LIRHFQSQVNELQSKQESLVVSEVREEILQKEITKLLEELREAKE 914
Cdd:PRK03918 653 EKKYSEEEYeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
306-500 |
1.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 306 ADPVTG----EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQnkKNEERMFKENQSLFSEVASLKEQMH-KSRFL 380
Cdd:COG4913 600 SRYVLGfdnrAKLAALEAELAELEEELAEAEERLEALEAELDALQER--REALQRLAEYSWDEIDVASAEREIAeLEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 381 SQVVEDseptrNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQI-AYVTGEKLYEIKILE 459
Cdd:COG4913 678 ERLDAS-----SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeAAEDLARLELRALLE 752
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767942266 460 ETHKQEI-SRLQKRL-QWYAENQELLDKdalRLREANEEIEKL 500
Cdd:COG4913 753 ERFAAALgDAVERELrENLEERIDALRA---RLNRAEEELERA 792
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
311-872 |
1.33e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 311 GEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERmFKENQSlfsEVASLKEQMHKSRFLSQvvedsept 390
Cdd:COG4913 337 GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE-FAALRA---EAAALLEALEEELEALE-------- 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 391 rnQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQA----KDQIAYVtGEkLYEIKILEETHKQEI 466
Cdd:COG4913 405 --EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAlgldEAELPFV-GE-LIEVRPEEERWRGAI 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 467 SRL--QKRL------QWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGnpSIRQKIRLKDKAA----------- 527
Cdd:COG4913 481 ERVlgGFALtllvppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD--SLAGKLDFKPHPFrawleaelgrr 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 528 -DAKK---IQDLERQVKEM--EGILK----------RRYPNSLPalILAASAAgdtvDKntVEFMEKRIKKLEADLegkd 591
Cdd:COG4913 559 fDYVCvdsPEELRRHPRAItrAGQVKgngtrhekddRRRIRSRY--VLGFDNR----AK--LAALEAELAELEEEL---- 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 592 EDAKKSLRTMEQQfqkmkiqyEQRLEQQEQLLAcklnqhdspRIKALEKELDDIKEAHQiTVRNLEAEIDVLkhqnaeld 671
Cdd:COG4913 627 AEAEERLEALEAE--------LDALQERREALQ---------RLAEYSWDEIDVASAER-EIAELEAELERL-------- 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 672 vkknDKDDEDFQSIEFQVEQahAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGREEMSAKRAkkdvl 751
Cdd:COG4913 681 ----DASSDDLAALEEQLEE--LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA----- 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 752 hsskgnansfpgTLDSKLYQPHtfTDSHVSEVLQenyRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIA 831
Cdd:COG4913 750 ------------LLEERFAAAL--GDAVERELRE---NLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLE 812
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 767942266 832 S----------LKAS----HQREIEKLLcqnaVENSSSKVAELNRKIATQEVLIR 872
Cdd:COG4913 813 SlpeylalldrLEEDglpeYEERFKELL----NENSIEFVADLLSKLRRAIREIK 863
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
349-690 |
1.42e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 42.53 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 349 NKKNEERMFKENQSLFSEVASLKEQMHKSR---------FLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRL 419
Cdd:PLN03229 420 NMKKREAVKTPVRELEGEVEKLKEQILKAKessskpselALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKAN 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 420 KQDK---QALEVDFEKMKKERDQAKDQIAYVTGEKlYEIKILEETHKqeisrlqkrlqwyaenqelldkdALRLREANEE 496
Cdd:PLN03229 500 SQDQlmhPVLMEKIEKLKDEFNKRLSRAPNYLSLK-YKLDMLNEFSR-----------------------AKALSEKKSK 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 497 IEKLKLEI-EKLKAESGNPSIRQKIR-LKDKAADAK--KIQDL--------ERQVKEMEGILKRRYPNSLPALILAASAA 564
Cdd:PLN03229 556 AEKLKAEInKKFKEVMDRPEIKEKMEaLKAEVASSGasSGDELdddlkekvEKMKKEIELELAGVLKSMGLEVIGVTKKN 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 565 GDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSlRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALEKELD- 643
Cdd:PLN03229 636 KDTAEQTPPPNLQEKIESLNEEINKKIERVIRS-SDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNs 714
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 767942266 644 -DIKEAHQitvrNLEAEIDVLKHQNAELD--VKKNDKDDEDFQSIEFQVE 690
Cdd:PLN03229 715 sELKEKFE----ELEAELAAARETAAESNgsLKNDDDKEEDSKEDGSRVE 760
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
312-515 |
1.49e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERM-------------FKENQSLFSEVA-SLKEQMHKS 377
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdklqaeiaeaeaeIEERREELGERArALYRSGGSV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 378 RFLSQVVEdseptrNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVtgeklyeiki 457
Cdd:COG3883 103 SYLDVLLG------SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL---------- 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 767942266 458 leETHKQEISRLQkrlqwyAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPS 515
Cdd:COG3883 167 --EAAKAELEAQQ------AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
336-727 |
1.56e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 336 ERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEptrnqnftdllAELRMAQKEKDSLLED 415
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELE-----------EELEELEAELEELREE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 416 IKRLKQDKQALEVDFEKMKKER---------DQAKDQIAYVTgEKLYEIKILEETH---KQEISRLQKRLQWYAENQelL 483
Cdd:COG4717 118 LEKLEKLLQLLPLYQELEALEAelaelperlEELEERLEELR-ELEEELEELEAELaelQEELEELLEQLSLATEEE--L 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 484 DKDALRLREANEEIEKLKLEIEKLKAESGNpsIRQKIrlkDKAADAKKIQDLERQVKEMEGILKrrypnsLPALILAASA 563
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEE--LEEEL---EQLENELEAAALEERLKEARLLLL------IAAALLALLG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 564 AGDTVDKNTVEFMEK---RIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSP-RIKALE 639
Cdd:COG4717 264 LGGSLLSLILTIAGVlflVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPeELLELL 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 640 KELDDIKEAH-QITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHA------------------------ 694
Cdd:COG4717 344 DRIEELQELLrEAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQElkeeleeleeqleellgeleelle 423
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 767942266 695 --------------KAKLVRLNEELAAKKREIQDLSKTVERLQKDRR 727
Cdd:COG4717 424 aldeeeleeeleelEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
532-715 |
1.87e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 532 IQDLERQVKEMEGIlkRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDakksLRTMEQQFQKMKIQ 611
Cdd:COG4913 244 LEDAREQIELLEPI--RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAE----LARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 612 YEQRLEQQEQLLAcKLNQHDSPRIKALEKELDDIKEAHQITVRNLE--------------AEIDVLKHQNAELdvkKNDK 677
Cdd:COG4913 318 LDALREELDELEA-QIRGNGGDRLEQLEREIERLERELEERERRRArleallaalglplpASAEEFAALRAEA---AALL 393
|
170 180 190
....*....|....*....|....*....|....*...
gi 767942266 678 DDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDL 715
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
350-978 |
1.93e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 350 KKNEERMFKENQSLFSEvASLKEQMHKSRFLSQVVED-SEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEV 428
Cdd:TIGR00606 451 KKQEELKFVIKELQQLE-GSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNH 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 429 DFEKMKKERDQAKDQIayvtgEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLK 508
Cdd:TIGR00606 530 HTTTRTQMEMLTKDKM-----DKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLE 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 509 AESGN------PSIRQKIRLKDKAADAKKIQ----DLERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEK 578
Cdd:TIGR00606 605 QNKNHinneleSKEEQLSSYEDKLFDVCGSQdeesDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQ 684
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 579 RIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAckLNQHDSPRIKALEKELDDIKEAHQITVRNLEA 658
Cdd:TIGR00606 685 RVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG--LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR 762
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 659 EIDVLKHQNAELD-VKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQK---DRRMMLSNQN 734
Cdd:TIGR00606 763 LKNDIEEQETLLGtIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQekqEKQHELDTVV 842
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 735 SKGREEMSAKRAKKDVLHSSKGNANSFPG---TLDSKLYQPHTFTD------SHVSEVLQENYRLKNELEGLISEKNELK 805
Cdd:TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSeklQIGTNLQRRQQFEEqlvelsTEVQSLIREIKDAKEQDSPLETFLEKDQ 922
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 806 MKSEAVMNQFENSMRRVKEDTAAHIASLKASH--QREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQS 883
Cdd:TIGR00606 923 QEKEELISSKETSNKKAQDKVNDIKEKVKNIHgyMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRL 1002
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 884 KQESLVVSEVREEILQKEIT--KLLEELREAKEnhtpEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQTHQVVETEQNK 961
Cdd:TIGR00606 1003 MRQDIDTQKIQERWLQDNLTlrKRENELKEVEE----ELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQK 1078
|
650
....*....|....*..
gi 767942266 962 EVEKWKRLAQLKNRELE 978
Cdd:TIGR00606 1079 GYEKEIKHFKKELREPQ 1095
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
312-473 |
2.24e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkenqslfsEVASLKEQMHKSRFLSQVVEDseptr 391
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL-----------EIEEVEARIKKYEEQLGNVRN----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 392 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE---KLYEIKILEETHKQEISR 468
Cdd:COG1579 88 NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEldeELAELEAELEELEAEREE 167
|
....*
gi 767942266 469 LQKRL 473
Cdd:COG1579 168 LAAKI 172
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
209-686 |
2.35e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 209 QTDSLGYCGENKEKKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKEKELENKLEELKKQQEK-ELFKLNQDNYILQA-K 286
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKaEAAEKKKEEAKKKAdA 1382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 287 LSSFEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQgyQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSE 366
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK--KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 367 VASLK-EQMHKSRFLSQVVE-----DSEPTRNQNFTDLLAELRMAQKEKDSlLEDIKRLKQDKQALEVDFEKMKKERDQA 440
Cdd:PTZ00121 1461 EAKKKaEEAKKADEAKKKAEeakkaDEAKKKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 441 KDQiayVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANE----EIEKLKLEIEKLKAESGNPSI 516
Cdd:PTZ00121 1540 KKA---EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEarieEVMKLYEEEKKMKAEEAKKAE 1616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 517 RQKIR---LKDKAADAKKIQDL----ERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEG 589
Cdd:PTZ00121 1617 EAKIKaeeLKKAEEEKKKVEQLkkkeAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 590 KDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLL----ACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKH 665
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIkaeeAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
490 500
....*....|....*....|.
gi 767942266 666 QNAELDVKKNDKDDEDFQSIE 686
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRMEVD 1797
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
312-760 |
2.36e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 391
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE----EAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 392 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDqiayvtgeklyeikILEETHKQEISrlqk 471
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA--------------LLEAGKCPECG---- 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 472 rlqwyaenQELLDK-DALRLREANEEIEKLKLEIEKLKAESGnpSIRQKI-RLKDKAADAKKIQDLERQVKEMEGILKRR 549
Cdd:PRK02224 459 --------QPVEGSpHVETIEEDRERVEELEAELEDLEEEVE--EVEERLeRAEDLVEAEDRIERLEERREDLEELIAER 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 550 ypnslpalilaasAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKkslrtmeqqfqkmkiqyEQRLEQQEQLlacklnq 629
Cdd:PRK02224 529 -------------RETIEEKRERAEELRERAAELEAEAEEKREAAA-----------------EAEEEAEEAR------- 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 630 hdsPRIKALEKELDDIKEAHQI--TVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSiefqveqahakaklvrlNEELAA 707
Cdd:PRK02224 572 ---EEVAELNSKLAELKERIESleRIRTLLAAIADAEDEIERLREKREALAELNDER-----------------RERLAE 631
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 767942266 708 KKREIQDLSKT-----VERLQKDRRMMLSNQnSKGREEMSAKRAKKDVLHSSKGNANS 760
Cdd:PRK02224 632 KRERKRELEAEfdearIEEAREDKERAEEYL-EQVEEKLDELREERDDLQAEIGAVEN 688
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
397-509 |
2.62e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 397 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEvdfEKMKKERDQAKDQIayvtgEKLYEIKILEEthkqEISRLQKRLqwy 476
Cdd:COG2433 417 RLEEQVERLEAEVEELEAELEEKDERIERLE---RELSEARSEERREI-----RKDREISRLDR----EIERLEREL--- 481
|
90 100 110
....*....|....*....|....*....|...
gi 767942266 477 aenqelldkdalrlREANEEIEKLKLEIEKLKA 509
Cdd:COG2433 482 --------------EEERERIEELKRKLERLKE 500
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
400-510 |
3.31e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 400 AELRMAQKEKDSLLEDIKR----LKQDKQaLEVDfEKMKKERDQAKDQIAyvtgEKLYEIKILEETHKQEISRLQKRLQW 475
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKeaeaIKKEAL-LEAK-EEIHKLRNEFEKELR----ERRNELQKLEKRLLQKEENLDRKLEL 104
|
90 100 110
....*....|....*....|....*....|....*
gi 767942266 476 YAENQELLDKDALRLREANEEIEKLKLEIEKLKAE 510
Cdd:PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
459-993 |
4.04e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 459 EETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQ 538
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 539 VKEMEGILKRrypnslpalilAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQ 618
Cdd:PRK03918 268 IEELKKEIEE-----------LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 619 QEQLLACKlnqhdsPRIKALEKELDDIKEAHQI--TVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQahaka 696
Cdd:PRK03918 337 EERLEELK------KKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE----- 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 697 KLVRLNEELAAKKREIQDLSKTVERLQKDRRM------MLSNQNSKG-----REEMSAKRAKKDVLHSSKGNANSFPGTL 765
Cdd:PRK03918 406 EISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrELTEEHRKElleeyTAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 766 DSKLYQPHTFTDSHvsEVLQENYRLKNELEGL----ISEKNELKMKSEAVMNQFENSMRRVKEDtaahiasLKASHQREI 841
Cdd:PRK03918 486 EKVLKKESELIKLK--ELAEQLKELEEKLKKYnleeLEKKAEEYEKLKEKLIKLKGEIKSLKKE-------LEKLEELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 842 EKLLCQNAVENSSSKVAELNRKIATQEV-LIRHFQSQVNELQS---KQESLVVSEVREEILQKEITKLLEELREAKENHT 917
Cdd:PRK03918 557 KLAELEKKLDELEEELAELLKELEELGFeSVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEEELDKAFEELA 636
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767942266 918 PEMKHFVGLEKKIKQMEMRHAQREQelqqiiqqthqvvETEQNKEVEKWKRLAQLKNR--ELEKFRTELDSILDVLRE 993
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKYSEEEY-------------EELREEYLELSRELAGLRAEleELEKRREEIKKTLEKLKE 701
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
318-510 |
9.45e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.91 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 318 QKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEqmhksRFLSQVVEDseptrnqnFTD 397
Cdd:PRK05771 38 EELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVE-----EELEKIEKE--------IKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 398 LLAELRMAQKEKDSLLEDIKRLKQDKqALEVDFEKMKKER-----------DQAKDQIAYVTGEKLYEIKILEET----- 461
Cdd:PRK05771 105 LEEEISELENEIKELEQEIERLEPWG-NFDLDLSLLLGFKyvsvfvgtvpeDKLEELKLESDVENVEYISTDKGYvyvvv 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767942266 462 -----HKQEISRLQKRLQWYAEN-------QELLDKDALRLREANEEIEKLKLEIEKLKAE 510
Cdd:PRK05771 184 vvlkeLSDEVEEELKKLGFERLEleeegtpSELIREIKEELEEIEKERESLLEELKELAKK 244
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
312-548 |
9.62e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 9.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 312 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNeermFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 391
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY----KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 392 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQK 471
Cdd:TIGR04523 418 QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767942266 472 RLQWYAENQELLDKdalrLREANEEIEKLKLEIEKLKAEsgnpsirqkirlkdKAADAKKIQDLERQVKEMEGILKR 548
Cdd:TIGR04523 498 LKKLNEEKKELEEK----VKDLTKKISSLKEKIEKLESE--------------KKEKESKISDLEDELNKDDFELKK 556
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
397-548 |
9.79e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 397 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyvtgEKLYEIKILEETHKQEISRLQKR---- 472
Cdd:COG3883 27 ELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGERARALYRSggsv 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942266 473 -----------LQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNpSIRQKIRLKDKAADAKKiqDLERQVKE 541
Cdd:COG3883 103 syldvllgsesFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEA-KLAELEALKAELEAAKA--ELEAQQAE 179
|
....*..
gi 767942266 542 MEGILKR 548
Cdd:COG3883 180 QEALLAQ 186
|
|
| |
