|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-827 |
2.96e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 2.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 160 QLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDA---ETKRALEELTEKLNEAQKqevVSDRVERRLQELEREMRTERE 236
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEkleELRLEVSELEEEIEELQK---ELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 237 LVERRQDQLGLMSLQLQEALKKQEAKADEhegaiknkLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQL 316
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEE--------LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 317 TKAEGDRKGLQHQVSQISKQQSnYQDEQGEDWRFRRgvEREKQDLEKQMSDLrVQLNFSAMASELEEVKRCMERKDKEKA 396
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIE-RLEARLERLEDRR--ERLQQEIEELLKKL-EEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 397 HLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEA-ERKHADLQ-------------------ISELTRHAEDATK 456
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlQENLEGFSegvkallknqsglsgilgvLSELISVDEGYEA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 457 QAERYLSELQQS-------------EALKEEAEKRREDLKLKAqesirqwkLKHKKLERALEKQSETVDELTGKNNQILK 523
Cdd:TIGR02168 538 AIEAALGGRLQAvvvenlnaakkaiAFLKQNELGRVTFLPLDS--------IKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 524 EKDELK-------------TQLYAALQQIENLRKELN------DVLTKRAL--------------QEEELHSKEEKLRDI 570
Cdd:TIGR02168 610 FDPKLRkalsyllggvlvvDDLDNALELAKKLRPGYRivtldgDLVRPGGVitggsaktnssileRRREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 571 KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANK 650
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 651 LAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQrELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAE 730
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT-LLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 731 NhirtlKAESLEEKNmakihrGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEAR 810
Cdd:TIGR02168 849 E-----LSEDIESLA------AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730
....*....|....*..
gi 767979865 811 LQLKDQLLCLETEQESI 827
Cdd:TIGR02168 918 EELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-769 |
1.87e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 1.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 166 QSLRDLSSEQIRLGDDFNRELSRR-------SRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELV 238
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 239 ERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKL----RQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRT 314
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEellkKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 315 QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGV---EREKQDLEKQMSDLRVQLNFSA-MASELEEVKR---- 386
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVkalLKNQSGLSGILGVLSELISVDEgYEAAIEAALGgrlq 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 387 --CMERKDKEKAHLASQVENltreleNGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQ--ISELTRHAEDATKQAERYL 462
Cdd:TIGR02168 549 avVVENLNAAKKAIAFLKQN------ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLgvAKDLVKFDPKLRKALSYLL 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 463 SELQQSEALKEEAEKRRedlKLKAQESI------------------RQWKLKHKKLERALEKQSETVDELTGKNNQILKE 524
Cdd:TIGR02168 623 GGVLVVDDLDNALELAK---KLRPGYRIvtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKA 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 525 KDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQ 604
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 605 MKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATI-- 682
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaa 859
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 683 -ITQLKLERDVHQRELKdltsSLQSVKTKHEQNIQELMKHFKKEKS---EAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:TIGR02168 860 eIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEelrELESKRSELRRELEELREKLAQLELRLEGLE 935
|
650
....*....|.
gi 767979865 759 SQCDRLTEELT 769
Cdd:TIGR02168 936 VRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
218-837 |
3.35e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.30 E-value: 3.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 218 DRVERRLQELEREMRT---ERELVERRQDqlglmsLQLQEALKKQEAKADEHEgAIKNKLRQTETEKNQLEQELELSRRL 294
Cdd:COG1196 189 ERLEDILGELERQLEPlerQAEKAERYRE------LKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 295 LNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRVQLNf 374
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER-------RRELEERLEELEEELAELEEELE- 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 375 sAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDA 454
Cdd:COG1196 334 -ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 455 TKQAERYLSELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSEtvdeltgknnQILKEKDELKTQLYA 534
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLA----------ELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 535 ALQQIENLRKELNdvLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEK--AHL 612
Cdd:COG1196 482 LLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEddEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 613 EEEIAELKKSQAQDKAKLLEmqesikDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDV 692
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPL------DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 693 HQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767979865 773 NENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-706 |
3.04e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 3.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 160 QLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAE---TKRALEELTEKLNEAQKQEVvsdRVERRLQELEREMRTERE 236
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAEleeLRLELEELELELEEAQAEEY---ELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 237 LVERRQDQLGLMSLQLQEaLKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQL 316
Cdd:COG1196 310 RRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 317 TKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKA 396
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE---------EALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 397 HLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISE-LTRHAEDATKQAERYLSELQQSEALKEEA 475
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 476 EKRREDLKLK---------AQESIRQwkLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLR-KE 545
Cdd:COG1196 540 LEAALAAALQnivveddevAAAAIEY--LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARyYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 546 LNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQ 625
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 626 DKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQ 705
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
.
gi 767979865 706 S 706
Cdd:COG1196 778 A 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-810 |
3.88e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 84.04 E-value: 3.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 190 SRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlglMSLQLQEALKKQEAKADEHEGA 269
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE---DARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 270 IKNKLRQTETEKNQLEQELELSRRLLnqsEGSRETLLHQVEELRtqltKAEGDRKglqhqVSQISKQQSNYQDEQGEDWR 349
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAE---EVRKAEELRKAEDAR----KAEAARK-----AEEERKAEEARKAEDAKKAE 1227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 350 FRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNH 429
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 430 FDTCEAERKHADL--QISELTRHAEDATKQAERylsELQQSEALKEEAEKRREDLKlKAQESIRQWKLK---HKKLERAL 504
Cdd:PTZ00121 1308 KKKAEEAKKADEAkkKAEEAKKKADAAKKKAEE---AKKAAEAAKAEAEAAADEAE-AAEEKAEAAEKKkeeAKKKADAA 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 505 EKQSETV---DELTGKNNQILKEKDELKTQlYAALQQIENLRKELNDV-----LTKRALQE---EELHSKEEKLRdiKSH 573
Cdd:PTZ00121 1384 KKKAEEKkkaDEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKkkadeAKKKAEEAkkaDEAKKKAEEAK--KAE 1460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 574 QADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEE---------EIAELKKSQAQDKAKLLEMQESIKDLSAIR 644
Cdd:PTZ00121 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkaaeakkKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 645 ADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEE-------TATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQE 717
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdknmalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 718 LMKHFKKEKsEAENHIRTLKAESLEEKNMA----------KIHRGQLEKLKSQCDRLTEELTQNENENKKlklKYQCLKD 787
Cdd:PTZ00121 1621 KAEELKKAE-EEKKKVEQLKKKEAEEKKKAeelkkaeeenKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK---AAEALKK 1696
|
650 660
....*....|....*....|....*.
gi 767979865 788 QLEEREKHISI---EEEHLRRMEEAR 810
Cdd:PTZ00121 1697 EAEEAKKAEELkkkEAEEKKKAEELK 1722
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-764 |
9.51e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 9.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 198 RALEELTEKLNEAQKQEvvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQT 277
Cdd:COG1196 232 LKLRELEAELEELEAEL---EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 278 ETEKNQLEQELELSRRLLNQsEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVERE 357
Cdd:COG1196 309 ERRRELEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 358 KQDLEKQMSDLRVQLNFSAMASELEEVKRcmERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAER 437
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERL--ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 438 KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDE--LT 515
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEaaLA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 516 GKNNQILKEKDElktqlyAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVknslDTIHRLESEL 595
Cdd:COG1196 546 AALQNIVVEDDE------VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA----SDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 596 KKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR 675
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 676 DEETATIITQLKLERDVHQRELKDLTSSLQsvktKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIhRGQLE 755
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEA----LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-ERELE 770
|
....*....
gi 767979865 756 KLKSQCDRL 764
Cdd:COG1196 771 RLEREIEAL 779
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
314-833 |
6.28e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 79.68 E-value: 6.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 314 TQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwrfrrgVEREKQDLEKQMSDLRVQLNfsamasELEEVKRCMERKDK 393
Cdd:TIGR04523 145 TEIKKKEKELEKLNNKYNDLKKQKEELENELNL-------LEKEKLNIQKNIDKIKNKLL------KLELLLSNLKKKIQ 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 394 EKAHLASQVENLtrelengEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKE 473
Cdd:TIGR04523 212 KNKSLESQISEL-------KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 474 EAEKRREDLKLKAQESIRQWKLK-HKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyaalQQIENLRKELNDVLTK 552
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLN-------EQISQLKKELTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 553 RALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLE 632
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 633 MQESIKDLSairadlanklaEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVkTKHE 712
Cdd:TIGR04523 438 NNSEIKDLT-----------NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL-NEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 713 QNIQELMKHFKKEKSEAENHIRTLKAE---------SLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQ 783
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEkkekeskisDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQE 585
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 767979865 784 CLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGK 833
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-816 |
7.69e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 79.80 E-value: 7.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 194 AETKRALEELTEKLNEAQKQEVVSDRVERRLQELERemrterelverrqdqlglmslqlqealkKQEAKADEHEGAIKNK 273
Cdd:PTZ00121 1196 AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKK----------------------------AEEAKKDAEEAKKAEE 1247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 274 LRQTETEKNQLEQELELSRR---LLNQSEGSRETLLHQVEELRT--QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDW 348
Cdd:PTZ00121 1248 ERNNEEIRKFEEARMAHFARrqaAIKAEEARKADELKKAEEKKKadEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 349 RfRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEK--QQLQMLDRLKEI 426
Cdd:PTZ00121 1328 K-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKadEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 427 QNHFDTCEAERKHAD--LQISELTRHAEDATKQAErylsELQQSEALKEEAEKRR--EDLKLKAQESIRQWKLKHKKLER 502
Cdd:PTZ00121 1407 ADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEEAKkaEEAKKKAEEAKKADEAKKKAEEA 1482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 503 alekqsETVDELTGKNNQILKEKDELKTQLYAAlQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADlelEVK 582
Cdd:PTZ00121 1483 ------KKADEAKKKAEEAKKKADEAKKAAEAK-KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD---ELK 1552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 583 NSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVL 662
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 663 KDLSDLTA----------QAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENH 732
Cdd:PTZ00121 1633 KKVEQLKKkeaeekkkaeELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 733 IRTLKAESL-EEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKL-KLKYQCLKDQLEEREKHISIEEEHLRRMEEAR 810
Cdd:PTZ00121 1713 EEKKKAEELkKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIaHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
....*.
gi 767979865 811 LQLKDQ 816
Cdd:PTZ00121 1793 RMEVDK 1798
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
276-814 |
2.28e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 78.24 E-value: 2.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 276 QTETEKNQLEQELELsrrLLNQSEGSRETLL--HQVE--ELRTQLTKAEGDRKGLQHQVSQISKQQSN--------YQDE 343
Cdd:pfam15921 246 QLEALKSESQNKIEL---LLQQHQDRIEQLIseHEVEitGLTEKASSARSQANSIQSQLEIIQEQARNqnsmymrqLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 344 QGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL 423
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLAN--SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 424 KEIQNHfDTCEAerkhadLQISELTRHAEDATKQAERYLSELQqseALKEEAEKRREDLKLKAQ---ESIRQWKLKHKKL 500
Cdd:pfam15921 401 KRLWDR-DTGNS------ITIDHLRRELDDRNMEVQRLEALLK---AMKSECQGQMERQMAAIQgknESLEKVSSLTAQL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 501 ERALEKQSETVDELTGKNnQILKEKDELKTQLYAALQQIENLRKELNDVLTKR------ALQE-EELHSKEEKLRDIKSH 573
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKK-MTLESSERTVSDLTASLQEKERAIEATNAEITKLrsrvdlKLQElQHLKNEGDHLRNVQTE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 574 QADLELEVKNSLDTIHRLESELKKQSKIQSQ-------MKVEKAHLEEEI-------AELKKSQAQDKAKLLEMQESIKD 639
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEIndrrlelQEFKILKDKKDAKIRELEARVSD 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 640 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEEtatiITQLKLERDVHQRELKDLTSSLQSVKTKheqniqeLM 719
Cdd:pfam15921 630 LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNK-------LK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 720 KHFKKEKSEAENHIRTLKAESLEEKNMAKI----------HRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQL 789
Cdd:pfam15921 699 MQLKSAQSELEQTRNTLKSMEGSDGHAMKVamgmqkqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
570 580
....*....|....*....|....*..
gi 767979865 790 E--EREKHISIEEEHLRRMEEARLQLK 814
Cdd:pfam15921 779 StvATEKNKMAGELEVLRSQERRLKEK 805
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
187-598 |
7.20e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 7.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 187 SRRSRSDAETKRALEELTEKLNEaqkqevvsdrverrLQELEREMRTERELVERRQDQLglmsLQLQEALKKQEAKADEH 266
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEE--------------LEEKIAELEKALAELRKELEEL----EEELEQLRKELEELSRQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 267 EGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGE 346
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 347 dwrfrrgVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEI 426
Cdd:TIGR02168 808 -------LRAELTLLNEEAANLRERLE--SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 427 QNhfdtceaERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKaQESIRQwKLKHKKlERALEK 506
Cdd:TIGR02168 879 LN-------ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR-LEGLEV-RIDNLQ-ERLSEE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 507 QSETVDELTGKNNQILKEKDELKTQLyaalQQIENLRKELNDVltkRALQEEELHSKEEKLRDIKSHQADLELEVKNSLD 586
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRL----KRLENKIKELGPV---NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
410
....*....|..
gi 767979865 587 TIHRLESELKKQ 598
Cdd:TIGR02168 1022 AIEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
413-744 |
8.29e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.26 E-value: 8.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 413 EKQQLQML-DRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQ----SEALKEEAEKRREDLKLKAQ 487
Cdd:TIGR02169 672 EPAELQRLrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 488 EsIRQWKLKHKKLERALEKQSETVDELTGKNN------------QILKEKDELKTQLYAALQQIENLRKELNDVLTKRAL 555
Cdd:TIGR02169 752 E-IENVKSELKELEARIEELEEDLHKLEEALNdlearlshsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 556 QEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQE 635
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 636 SIKDLSAIRADLANKLAeeerAKKAVLKDLSDLTAQAKSRDEETAtIITQLKLERDVHQRELkdltSSLQSVKTKHEQNI 715
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLE----ALEEELSEIEDPKGEDEEIPEEEL-SLEDVQAELQRVEEEI----RALEPVNMLAIQEY 981
|
330 340 350
....*....|....*....|....*....|....
gi 767979865 716 QELMKHF-----KKEKSEAENHIRTLKAESLEEK 744
Cdd:TIGR02169 982 EEVLKRLdelkeKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
200-949 |
1.22e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 1.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 200 LEELTEKLNEAQKQEvvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAkadehegaIKNKLRQTET 279
Cdd:TIGR02168 234 LEELREELEELQEEL---KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA--------LANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 280 EKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQ 359
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 360 DLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQM-LDRLKEIQNHFDTCEAERK 438
Cdd:TIGR02168 383 TLRSKVAQLELQIA--SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAeLEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 439 HADLQISELTRHAEDATKQAERYLSELQQsealKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE--TVDE--- 513
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEliSVDEgye 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 514 ------LTGKNNQILKEKDELKTQLYAALQQIENLRKELN--DVLTKRALQEEELHSKEEK------LRDIKSHQADLEL 579
Cdd:TIGR02168 537 aaieaaLGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLplDSIKGTEIQGNDREILKNIegflgvAKDLVKFDPKLRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 580 EVKNSLDTIH---RLESELKKQSKIQSQMK--------------VEKAHLEEEIAELKKSQAQDK--AKLLEMQESIKDL 640
Cdd:TIGR02168 617 ALSYLLGGVLvvdDLDNALELAKKLRPGYRivtldgdlvrpggvITGGSAKTNSSILERRREIEEleEKIEELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 641 SAIRADLANK---LAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQE 717
Cdd:TIGR02168 697 EKALAELRKEleeLEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 718 LmKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHIS 797
Cdd:TIGR02168 777 L-AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 798 IEEEHLRRMEEARLQLKDQLLCLETEQESIlgvigKEIDAACKTFSKDSVEKLKVfssgpdihydphrwLAESKTKLQWL 877
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLNERASL-----EEALALLRSELEELSEELRE--------------LESKRSELRRE 916
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767979865 878 CEELKERENREKNLRHQLmlcRQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMG 949
Cdd:TIGR02168 917 LEELREKLAQLELRLEGL---EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
222-984 |
1.27e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.95 E-value: 1.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 222 RRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGS 301
Cdd:PTZ00121 1027 EKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 302 RETLLHQVEELRTQLTKAEGDRKGLQ-HQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE 380
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEaRKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 381 L---EEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTC---EAERKHADLQISELTRHAEDA 454
Cdd:PTZ00121 1187 VrkaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAkkaEEERNNEEIRKFEEARMAHFA 1266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 455 TKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLE-RALEKQSETVDELTGKNNQILKEKDELKTQLY 533
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 534 AALQQIENLRKELNDvlTKRALQEEELHSKEEKLrdiKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLE 613
Cdd:PTZ00121 1347 AAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKK---KADAAKKKAEEKKKADEAKKKAEEDKKKAD-----ELKKAAAA 1416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 614 EEIAELKKSQAQDKAKLLEMQESIKDlsAIRADLANKLAEEER-AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDV 692
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKkAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 693 HQRELKDLTSSLQSVKTKHEQNIQELMKHfKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKK-ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 773 NENKKLKLKYQCLKDQLEER--------EKHISIEEEHLRRMEEARLQlKDQLLCLETEQESILGVIGKEIDaacktfSK 844
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARieevmklyEEEKKMKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEAE------EK 1646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 845 DSVEKLKVFSSGPDIHYDPHRWLAESKTKlqwLCEELKERENREKNLRHQLMLCRQQLRNLTE--NKESELQCLFQQIER 922
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKK---KAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEKKKAEELKK 1723
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979865 923 QEQLLDEIHREKRDLLEETQRKDEEM--GSLQPKLLFKLPPWEDASQTAVRNQSEAQFEEKADR 984
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEAkkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
444-794 |
3.93e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 3.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 444 ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKklERALEKQSetvdeLTGKNNQILK 523
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE--LRELELAL-----LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 524 EKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKShqadlelEVKNSLDTIHRLESELKKQSKIQS 603
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK-------ELYALANEISRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 604 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAksrdEETATII 683
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 684 TQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKK----EKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKS 759
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKleeaELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350
....*....|....*....|....*....|....*
gi 767979865 760 QCDRLTEELTQNENENKKLKLKYQCLKDQLEEREK 794
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
221-947 |
4.47e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 4.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 221 ERRlQELEREMRTERELVERRQDQLGLMSLQLqEALKKQEAKADEHEgAIKNKLRQTE-----TEKNQLEQELELSRRLL 295
Cdd:TIGR02168 172 ERR-KETERKLERTRENLDRLEDILNELERQL-KSLERQAEKAERYK-ELKAELRELElallvLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 296 NQSEgsretllHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDL-----RV 370
Cdd:TIGR02168 249 KEAE-------EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLerqleEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 371 QLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAErkhadlqISELTRH 450
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK-------VAQLELQ 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQ-WKLKHKKLERALEKQSETVDELTGKNNQILKEKDELK 529
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 530 TQLYAALQQIENLRKELNDVLTkralQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIH-----RLESELKKQSKIQSQ 604
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLER----LQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyEAAIEAALGGRLQAV 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 605 MKVEKAHLEEEIAELKKSQ--------------AQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVL------KD 664
Cdd:TIGR02168 551 VVENLNAAKKAIAFLKQNElgrvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 665 LSDLTAQAKS-----------------------RDEETATIITQLKLERDVHQRELKDLTSSLQSVktkhEQNIQELmkh 721
Cdd:TIGR02168 631 LDNALELAKKlrpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAEL----EKALAEL--- 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 722 fKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEE 801
Cdd:TIGR02168 704 -RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 802 HLRRMEEARLQLKDQLLCLETEQESILGVIGKE-IDAACKTFSKDSVEklkvfssgpdihydphRWLAESKTKLQWLCEE 880
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAELTLLnEEAANLRERLESLE----------------RRIAATERRLEDLEEQ 846
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979865 881 LKERENREKNLRHQLMLCRQQLRNLtenkESELQCLFQQIERQEQLLDEiHREKRDLLEETQRKDEE 947
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEEL----ESELEALLNERASLEEALAL-LRSELEELSEELRELES 908
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-655 |
7.02e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 7.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 166 QSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQL 245
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 246 glmsLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKG 325
Cdd:COG1196 389 ----LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 326 LQHQVSQISKQQSNYQDEQGEdwrfrRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:COG1196 465 LAELLEEAALLEAALAELLEE-----LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 406 TRELENGEKQQLQMLD--RLKEIQNHFDTCEAERKH--ADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRRED 481
Cdd:COG1196 540 LEAALAAALQNIVVEDdeVAAAAIEYLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 482 LKLKAQESIRQWKLKHKKLERAL-EKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEEL 560
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 561 HSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDL 640
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
490
....*....|....*
gi 767979865 641 SAIradlaNKLAEEE 655
Cdd:COG1196 780 GPV-----NLLAIEE 789
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
184-732 |
2.63e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.25 E-value: 2.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 184 RELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLqEALKKQEAKA 263
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 264 DEHEGAIKNKLRQTETEKNQLE---QELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKkeiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 341 QDeqgedwrfRRGVEREKQDLEKQMSDLRVQLN-FSAMASELEEVKRCMERKDKEKAHLAS-QVENLTRELENGEKQQLQ 418
Cdd:PRK03918 331 KE--------LEEKEERLEELKKKLKELEKRLEeLEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 419 MLDRLKEIQNHFDTCEAERKHADLQISELTR------------HAEDATKQAERYLSELQQSEALKEEAEKRREDLK--L 484
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRkeL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 485 KAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKE 564
Cdd:PRK03918 483 RELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 565 EKLRDIKSHQADLELEVKN----SLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDL 640
Cdd:PRK03918 563 KKLDELEEELAELLKELEElgfeSVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 641 SAIRADLANKLA----EEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKT--KHEQN 714
Cdd:PRK03918 643 EELRKELEELEKkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKleKALER 722
|
570
....*....|....*...
gi 767979865 715 IQELMKHFKKEKSEAENH 732
Cdd:PRK03918 723 VEELREKVKKYKALLKER 740
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
173-731 |
7.05e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.17 E-value: 7.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 173 SEQIRLGDDFNRELSRRSRSDaETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGLMSLQL 252
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKK---AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 253 QEALKKQEAKADEHEgaiknKLRQTETEKNQLEQELELSRRLLNQSEGSRetllhQVEELRtqlTKAEGDRKGLQHQVSQ 332
Cdd:PTZ00121 1374 EEAKKKADAAKKKAE-----EKKKADEAKKKAEEDKKKADELKKAAAAKK-----KADEAK---KKAEEKKKADEAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 333 ISKQQSNYQDEQGEDwrfrrgvEREKQDLEKQMsdlrvqlnfsamaselEEVKRCMERkdKEKAHLASQVENLTRELENG 412
Cdd:PTZ00121 1441 EEAKKADEAKKKAEE-------AKKAEEAKKKA----------------EEAKKADEA--KKKAEEAKKADEAKKKAEEA 1495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 413 EKQ--QLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAE-RYLSELQQSEALKEEAEKRREDLKLKAQES 489
Cdd:PTZ00121 1496 KKKadEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEkKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKE---KDELKTQLYAALQQIENLRKELNDVLTKRALQE---EELHSK 563
Cdd:PTZ00121 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEeakKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKkkaEELKKA 1655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 564 EEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEeeiaELKKSQAQDKAKLLEMQESiKDLSAI 643
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE----ELKKKEAEEKKKAEELKKA-EEENKI 1730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 644 RADLANKLAEEERAKkavlkdlsdltAQAKSRDEETATIITQLKLERDVHQRELKDLTSSL--QSVKTKHEQNIQELMKH 721
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKK-----------AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVieEELDEEDEKRRMEVDKK 1799
|
570
....*....|
gi 767979865 722 FKKEKSEAEN 731
Cdd:PTZ00121 1800 IKDIFDNFAN 1809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-655 |
7.34e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 7.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 310 EELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRVQLnfsamaseleevkrcmE 389
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEE-------LEQLRKELEELSRQISALRKDL----------------A 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 390 RKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQI------------------SELTRHA 451
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeelkalrealdelrAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 452 EDATKQAERylseLQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ 531
Cdd:TIGR02168 817 EEAANLRER----LESLERRIAATERRLEDL----EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 532 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNsldtihrleselkKQSKIQSQMKVEKAH 611
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN-------------LQERLSEEYSLTLEE 955
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 767979865 612 LEEEIAELKKSQAQDKAKLLEMQESIKDLSAIradlaNKLAEEE 655
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKELGPV-----NLAAIEE 994
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
193-1011 |
1.00e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 1.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 193 DAETKRALEELteklneaqkqEVVSDRVErRLQELEREMRTERELVERrqdqlglmslqlqealkkqeakadehegaikn 272
Cdd:TIGR02169 169 DRKKEKALEEL----------EEVEENIE-RLDLIIDEKRQQLERLRR-------------------------------- 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 273 klrqtetEKNQLEQELELSRRLlnqSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqqsnyqdeqgedwrfrr 352
Cdd:TIGR02169 206 -------EREKAERYQALLKEK---REYEGYELLKEKEALERQKEAIERQLASLEEELEKL------------------- 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 353 gvEREKQDLEKQMSDLRVQLNfsamaselEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIqnhfdt 432
Cdd:TIGR02169 257 --TEEISELEKRLEEIEQLLE--------ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA------ 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 433 cEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQE---SIRQWKLKHKKLERALEKQSE 509
Cdd:TIGR02169 321 -EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkEFAETRDELKDYREKLEKLKR 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 510 TVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIH 589
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 590 RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRAD--LANKLAEEERAKKAVLKDLSD 667
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERyaTAIEVAAGNRLNNVVVEDDAV 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 668 LTAQAKSRDEETATIITQLKLERDVHQRELKDL------------------------------TSSLQSVKTKHEQNIQE 717
Cdd:TIGR02169 560 AKEAIELLKRRKAGRATFLPLNKMRDERRDLSIlsedgvigfavdlvefdpkyepafkyvfgdTLVVEDIEAARRLMGKY 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 718 LMKHFKK---EKSEA----ENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLE 790
Cdd:TIGR02169 640 RMVTLEGelfEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 791 EREKHISIEEEHLRRMEEARLQLKDQLLCLE---TEQESILGVIGKEIDAacktfSKDSVEKLKVFSSGPDIHYDPHRWl 867
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEqeiENVKSELKELEARIEE-----LEEDLHKLEEALNDLEARLSHSRI- 793
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 868 AESKTKLQWLCEELKERENREKNLRHQL---MLCRQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRK 944
Cdd:TIGR02169 794 PEIQAELSKLEEEVSRIEARLREIEQKLnrlTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL 873
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979865 945 DEEMGSLQPKLlfklppwedASQTAVRNQSEAQFEEKADRVIALETSTQVALDHLESVPEKLSLLED 1011
Cdd:TIGR02169 874 EAALRDLESRL---------GDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
268-952 |
1.03e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 268 GAIKNKLRQTETEKNqleqeLELSRRLLNQSEGSRETLLHQVEELRTQLTKAEgDRKGLQHQVSQISKQQSNYQDEQGED 347
Cdd:TIGR02168 166 GISKYKERRKETERK-----LERTRENLDRLEDILNELERQLKSLERQAEKAE-RYKELKAELRELELALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 348 WrfRRGVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQqlqmldrlKEIQ 427
Cdd:TIGR02168 240 E--LEELQEELKEAEEELEELTAELQ--ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ--------KQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 428 NhfdtceAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQW---KLKHKKLERAL 504
Cdd:TIGR02168 308 R------ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeelESRLEELEEQL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 505 EKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQE-----EELHSKEEKLRDIKSHQADLEL 579
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEELERLEE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 580 EVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLeEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKK 659
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 660 AVLKD-------------LSDLTAQAKSR---------DEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQE 717
Cdd:TIGR02168 541 AALGGrlqavvvenlnaaKKAIAFLKQNElgrvtflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSY 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 718 LMKHF-----------KKEKSEAENHIRTLKAES------------------LEEKNMAKIHRGQLEKLKSQCDRLTEEL 768
Cdd:TIGR02168 621 LLGGVlvvddldnaleLAKKLRPGYRIVTLDGDLvrpggvitggsaktnssiLERRREIEELEEKIEELEEKIAELEKAL 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 769 TQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSKDSVE 848
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 849 KLKVFSSGPDIHYDPHRW------LAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES---ELQCLFQQ 919
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELkalreaLDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEElseDIESLAAE 860
|
730 740 750
....*....|....*....|....*....|...
gi 767979865 920 IERQEQLLDEIHREKRDLLEETQRKDEEMGSLQ 952
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALLR 893
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
381-946 |
1.33e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.94 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 381 LEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAER 460
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 461 YLSELQQSEALKE---EAEKRREDLKLKaqesIRQWKLKHKKLERaLEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:PRK03918 247 LESLEGSKRKLEEkirELEERIEELKKE----IEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 538 QIENLRKELNDVLTKRALQEE-------------ELHSKEEKLRDIKSHQADLE-LEVKNSLDTIHRLESELKKQSKIQS 603
Cdd:PRK03918 322 EINGIEERIKELEEKEERLEElkkklkelekrleELEERHELYEEAKAKKEELErLKKRLTGLTPEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 604 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADL-----ANKLAEEERAKKAVLKDLSDLTAQAKSRDEE 678
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 679 TATIITQLKLERDVhqRELKDLTSSLQSVKtkheqniQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:PRK03918 482 LRELEKVLKKESEL--IKLKELAEQLKELE-------EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 759 SqcdrLTEELTQNENENKKLKLKYQCLKDQLEERE-KHISIEEEHLRRMEEAR---LQLKDQLLCLETEQESIlgvigke 834
Cdd:PRK03918 553 E----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYneyLELKDAEKELEREEKEL------- 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 835 idAACKTFSKDSVEKlkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKNLRHqlmlcrQQLRNLTENKESELQ 914
Cdd:PRK03918 622 --KKLEEELDKAFEE-----------------LAETEKRLEELRKELEELEKKYSEEEY------EELREEYLELSRELA 676
|
570 580 590
....*....|....*....|....*....|..
gi 767979865 915 CLFQQIERQEQLLDEIHREKRDLLEETQRKDE 946
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
283-664 |
6.81e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 6.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 283 QLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDR-KGLQHQVSQISKQQSnyqdEQGEDWRFRRGVEREKQDL 361
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREReKAERYQALLKEKREY----EGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 362 EKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELEN-GEKQQLQMLDRLKEIqnhfdtcEAERKHA 440
Cdd:TIGR02169 243 ERQLASLE---------EELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGEL-------EAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 441 DLQISELTRHAEDATKQAERYLSELqqsEALKEEAEKRREDlklkaqesIRQWKLKHKKLERALEKQSETVDELTGKNNQ 520
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEI---DKLLAEIEELERE--------IEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 521 ILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSK 600
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979865 601 IQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAiRADLANKLAEEERAKKAVLKD 664
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA-QARASEERVRGGRAVEEVLKA 518
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
199-808 |
1.03e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 66.35 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 199 ALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEgaiknKLRQTE 278
Cdd:pfam01576 357 ALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESE-----RQRAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 279 TEK-NQLEQELELSRRLLNQSEG----------SRETLLHQVEELRTQLTKAegdRKGLQHQVSQISKQQSNYQDEQGED 347
Cdd:pfam01576 432 AEKlSKLQSELESVSSLLNEAEGkniklskdvsSLESQLQDTQELLQEETRQ---KLNLSTRLRQLEDERNSLQEQLEEE 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 348 WRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE-LEEVKR-----------CMERKDKEKAHLASQVENLTRELEN---G 412
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEaLEEGKKrlqrelealtqQLEEKAAAYDKLEKTKNRLQQELDDllvD 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 413 EKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKqaERYLSELQQSEALKEEAEKRREdlklkAQESIRQ 492
Cdd:pfam01576 589 LDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAR--EKETRALSLARALEEALEAKEE-----LERTNKQ 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 493 WKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ---LYAALQQIEN--LRKELNdVLTKRALQEEELHSKEEK- 566
Cdd:pfam01576 662 LRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQleeLEDELQATEDakLRLEVN-MQALKAQFERDLQARDEQg 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 567 -------LRDIKSHQADLELEVK---NSLDTIHRLESELKkqsKIQSQMKVEKAHLEEEIAELKKSQAQDKakllEMQES 636
Cdd:pfam01576 741 eekrrqlVKQVRELEAELEDERKqraQAVAAKKKLELDLK---ELEAQIDAANKGREEAVKQLKKLQAQMK----DLQRE 813
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 637 IKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETatiiTQLKLERDVHQRELKDLTSSLQSVktkheqniq 716
Cdd:pfam01576 814 LEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERAR----RQAQQERDELADEIASGASGKSAL--------- 880
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 717 elmkhfKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELT--------------QNENENKKLKLKY 782
Cdd:pfam01576 881 ------QDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAaerstsqksesarqQLERQNKELKAKL 954
|
650 660
....*....|....*....|....*..
gi 767979865 783 QCLKDQLEEREKH-ISIEEEHLRRMEE 808
Cdd:pfam01576 955 QEMEGTVKSKFKSsIAALEAKIAQLEE 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
153-597 |
3.16e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMR 232
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 233 TERELVERRQDQLGLMSLQLQEALKKQEAKAdEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEEL 312
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 313 RTQLTKAEGDRKGLQHQVSQISKQQSNyqDEQGEDWRF----RRGVEREKQDLEKQMSDLRVQLNfsamASELEEVKRCM 388
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLL--AGLRGLAGAvavlIGVEAAYEAALEAALAAALQNIV----VEDDEVAAAAI 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 389 ER-KDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQ 467
Cdd:COG1196 564 EYlKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 468 SEALKEEAEkrREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELN 547
Cdd:COG1196 644 GRLREVTLE--GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 767979865 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK 597
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
451-794 |
1.49e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.21 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 531 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKA 610
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKkavlKDLSDLTAQAKSRDEEtatIITQLKLER 690
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE----EELEKLQEKLEQLEEE---LLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 691 DVHQRELKDLTSSLqSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQ 770
Cdd:pfam02463 384 ERLSSAAKLKEEEL-ELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLK 462
|
330 340
....*....|....*....|....
gi 767979865 771 NENENKKLKLKYQCLKDQLEEREK 794
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQL 486
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
475-831 |
2.01e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 2.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 475 AEKRREDLKLKAQESIRQWKLKHKKLERALEKqsetvdeLTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRA 554
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSS-------LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 555 LQEEELHSKEEKLRDIKshqadlelevknslDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKllEMQ 634
Cdd:TIGR02169 734 KLKERLEELEEDLSSLE--------------QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP--EIQ 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 635 ESIKDLSAIRADLANKLAEEERAkkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS---SLQSVKTKH 711
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQK----LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGkkeELEEELEEL 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 712 EQNIQEL---MKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLK------LKY 782
Cdd:TIGR02169 874 EAALRDLesrLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeeLSL 953
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 767979865 783 QCLKDQLEEREKHISIEE-------EHLRRMEEARLQLKDQLLCLETEQESILGVI 831
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-629 |
2.10e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 399 ASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKR 478
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 479 REDLKLKAQESIRQWKLKHKKLERALEKQSETVdeltgknNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEE 558
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDF-------LDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAK 629
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
200-736 |
3.32e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 200 LEELTEKLNEAQKQ----EVVSDRVERRLQELEREMRTERElvERRQDQLGLMSL----QLQEALKKQEAKADEHEGAIK 271
Cdd:TIGR04523 154 LEKLNNKYNDLKKQkeelENELNLLEKEKLNIQKNIDKIKN--KLLKLELLLSNLkkkiQKNKSLESQISELKKQNNQLK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 272 NKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRfr 351
Cdd:TIGR04523 232 DNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN-- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 352 RGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQqlqmldrLKEIQNHFD 431
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNN--KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE-------IEKLKKENQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 432 TCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK---LKAQESIR-------QWKLKHKKLE 501
Cdd:TIGR04523 381 SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKetiIKNNSEIKdltnqdsVKELIIKNLD 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 502 RALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEV 581
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 582 KNSLDTIHRLESELKKqskiqSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAV 661
Cdd:TIGR04523 541 SDLEDELNKDDFELKK-----ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 662 LKDLSDLTAQAK----------SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK--------------------- 710
Cdd:TIGR04523 616 EKELEKAKKENEklssiiknikSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKiddiielmkdwlkelslhykk 695
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 767979865 711 ----------------HEQNIQELMKHFKKEKSEAENHIRTL 736
Cdd:TIGR04523 696 yitrmirikdlpkleeKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
271-959 |
4.21e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 4.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 271 KNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRF 350
Cdd:TIGR04523 25 KNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSD 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 351 RRGVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRC-------MERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL 423
Cdd:TIGR04523 105 LSKINSEIKNDKEQKNKLEVELN--KLEKQKKENKKNidkflteIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 424 KEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERA 503
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEI----NEKTTEISNTQTQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 504 LEKQSETVDELTGKNNQILKEK---DELKTQLYAALQQIENLRKELNDVLTKRAlqEEELHSKEEKLRDIKShqadlelE 580
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNkkiKELEKQLNQLKSEISDLNNQKEQDWNKEL--KSELKNQEKKLEEIQN-------Q 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 581 VKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERakka 660
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK---- 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 661 vlkdlsdltaQAKSRDEEtatiITQLKLERDVHQRELKDLtsslQSVKTKHEQNIQELmkhfKKEKSEAENHIRTLKAES 740
Cdd:TIGR04523 406 ----------LNQQKDEQ----IKKLQQEKELLEKEIERL----KETIIKNNSEIKDL----TNQDSVKELIIKNLDNTR 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 741 LEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCL 820
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 821 ETEQESILGVIGKEIdaacktfskdsveklkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKNlrhqlmlCRQ 900
Cdd:TIGR04523 544 EDELNKDDFELKKEN-------------------------------LEKEIDEKNKEIEELKQTQKSLKK-------KQE 585
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 767979865 901 QLRNLTENKESELQCLFQQIERQEQLLDEIHREkrdlLEETQRKDEEMGSLQPKLLFKL 959
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE----LEKAKKENEKLSSIIKNIKSKK 640
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
214-929 |
5.07e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 5.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 214 EVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLE---QELEL 290
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQntvHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 291 SRRLLNQSEGSRETllhQVEELRTQLTKAEGdrkgLQHQVSQISKqqsnyqdeqgeDWRFRRGVEREKQDlekQMSDLRV 370
Cdd:pfam15921 157 AKCLKEDMLEDSNT---QIEQLRKMMLSHEG----VLQEIRSILV-----------DFEEASGKKIYEHD---SMSTMHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 371 QLNFSAMASELEEVkrcmerkDKEKAHLASQVENLTRELENGEKQQLQMLDRLkeIQNHFDTCEAERKHADLQISELTRH 450
Cdd:pfam15921 216 RSLGSAISKILREL-------DTEISYLKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEQLISEHEVEITGLTEK 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 451 AEDATKQAERYLSELQ--QSEALKEEA---------EKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNN 519
Cdd:pfam15921 287 ASSARSQANSIQSQLEiiQEQARNQNSmymrqlsdlESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERD 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 520 QILKEKDELKTQLYAALQQIENLRKELNdvLTKRalQEEELHSKEEKLRDIKSHqadLELEVKNSLDTIHRLESELKK-Q 598
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLHKREKELS--LEKE--QNKRLWDRDTGNSITIDH---LRRELDDRNMEVQRLEALLKAmK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 599 SKIQSQMKVEKAHLEEEIAELKKSQAqdkakLLEMQESIKDLsairadlANKLAEEERAKKAVLKD----LSDLTAQAKS 674
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSS-----LTAQLESTKEM-------LRKVVEELTAKKMTLESsertVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 675 RD---EETATIITQLKLERDVHQRELkdltsslQSVKTKHEqniqelmkHFKKEKSEAEnhirTLKAESLEEKNMAKIHR 751
Cdd:pfam15921 508 KEraiEATNAEITKLRSRVDLKLQEL-------QHLKNEGD--------HLRNVQTECE----ALKLQMAEKDKVIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 752 GQLEKLksqcdrlteelTQNENENKKLKLKYQCLKDQLEerekhisieeehlRRMEEARLQLKDQLLCLETEQESIlgvi 831
Cdd:pfam15921 569 QQIENM-----------TQLVGQHGRTAGAMQVEKAQLE-------------KEINDRRLELQEFKILKDKKDAKI---- 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 832 gKEIDAackTFSKDSVEKLKVFSSGPDihydPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES 911
Cdd:pfam15921 621 -RELEA---RVSDLELEKVKLVNAGSE----RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMET 692
|
730
....*....|....*...
gi 767979865 912 ELQCLFQQIERQEQLLDE 929
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQ 710
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
183-677 |
5.94e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 5.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 183 NRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSlQLQEALKKQEAK 262
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR-EIEKRLSRLEEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 263 ADEHEGAIKnKLRQTETEKNQLEQELELSRRLLNQSEGSREtLLHQVEELRTQLTKAEGDRKGLqhQVSQISKQQSNYQD 342
Cdd:PRK03918 323 INGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 343 EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNfsamasELEEVKRCME--RKDKEKAHLASQVENLTRELENGEKQQLQML 420
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIE------ELKKAKGKCPvcGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 421 DRLKEIQNHFDTCEAERKHAdlqiSELTRHAE--DATKQAERYLSELQqsealKEEAEKRREDLKLKAQESIrqwklKHK 498
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKE----SELIKLKElaEQLKELEEKLKKYN-----LEELEKKAEEYEKLKEKLI-----KLK 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 499 KLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKShqadle 578
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK------ 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 579 lEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKllEMQESIKDLSAIRADLANKLAEEERAK 658
Cdd:PRK03918 613 -ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRR 689
|
490
....*....|....*....
gi 767979865 659 KAVLKDLSDLTAQAKSRDE 677
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREK 708
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
532-748 |
7.79e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 7.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 532 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAH 611
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 612 LEEEIAELK-----------KSQAQDKAKLLEMQESIKDLsAIRADLANKLAEEERAK----KAVLKDLSDLTAQAKSRD 676
Cdd:COG4942 95 LRAELEAQKeelaellralyRLGRQPPLALLLSPEDFLDA-VRRLQYLKYLAPARREQaeelRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767979865 677 EETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELmKHFKKEKSEAENHIRTLKAESLEEKNMAK 748
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL-AELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-411 |
8.46e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 8.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMR 232
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 233 TERELVERRQDQLGlmslQLQEALKKQEAKADEHEgaikNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEEL 312
Cdd:TIGR02168 800 ALREALDELRAELT----LLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 313 RTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQL--------NFSAMASE---- 380
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLeglevridNLQERLSEeysl 951
|
250 260 270
....*....|....*....|....*....|..
gi 767979865 381 -LEEVKRCMERKDKEKAHLASQVENLTRELEN 411
Cdd:TIGR02168 952 tLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
177-623 |
1.07e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 177 RLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEAL 256
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 257 KKQEAKADEHEGAIKNK-----------LRQTETEKNQLEQEL-ELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRK 324
Cdd:COG4717 130 LYQELEALEAELAELPErleeleerleeLRELEEELEELEAELaELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 325 GLQHQVSQIsKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVqlnFSAMASELEEVKRCMERKDKEKAHLASQVEN 404
Cdd:COG4717 210 ELEEELEEA-QEELEELEEELEQLENELEAAALEERLKEARLLLLI---AAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 405 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 484
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 485 KAQESIRQWKLKHKKLE-----RALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQI--ENLRKELNDVLTKRALQE 557
Cdd:COG4717 366 EELEQEIAALLAEAGVEdeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELE 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767979865 558 EELHSKEEKLRDIKSHQADLELEVKNS--LDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQ 623
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAelLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
198-706 |
1.12e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.34 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 198 RALEELTEKLNEAQKQEVVSDRVERRLQELER--------------EMRTEREL---VERRQDQLGLMSLQLQEALKKQE 260
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKkhqqlceeknalqeQLQAETELcaeAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 261 AKADEHEgaikNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQ--- 337
Cdd:pfam01576 82 SRLEEEE----ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERkll 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 338 ----SNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMA-SELEEVKRCMERKDKEK----AHLASQVENLTRE 408
Cdd:pfam01576 158 eeriSEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrQELEKAKRKLEGESTDLqeqiAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 409 LENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEdaTKQAERYLSElQQSEALKEEAEKRREDLKLKAQE 488
Cdd:pfam01576 238 LAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLE--SERAARNKAE-KQRRDLGEELEALKTELEDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 489 SIRQWKLKHKK------LERALE---------------KQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELN 547
Cdd:pfam01576 315 TAAQQELRSKReqevteLKKALEeetrsheaqlqemrqKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELR 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELkKSQAQDK 627
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL-ESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 628 AKLLE--------MQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQ---AKSRDEETATIITQLKLERDVHQRE 696
Cdd:pfam01576 474 QELLQeetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQlsdMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570
....*....|
gi 767979865 697 LKDLTSSLQS 706
Cdd:pfam01576 554 LEALTQQLEE 563
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-414 |
1.64e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 142 RMRSRTGVRFVQETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLN----EAQKQEVVS 217
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTllneEAANLRERL 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAiKNKLRQTETEKNQLEQELELSRRLLNQ 297
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-LNERASLEEALALLRSELEELSEELRE 905
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 298 SEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN-YQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQL---- 372
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARRRLKRLENKIkelg 985
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 767979865 373 --NFSAMAsELEEVKrcmERKDkekaHLASQVENLTRELENGEK 414
Cdd:TIGR02168 986 pvNLAAIE-EYEELK---ERYD----FLTAQKEDLTEAKETLEE 1021
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
201-772 |
2.28e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.11 E-value: 2.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 201 EELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGaIKNKLRQTETE 280
Cdd:pfam05483 233 KEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED-IKMSLQRSMST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 281 KNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqqsnyqdeqgedwrfrrgVEREKQD 360
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEL--------------------LRTEQQR 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 361 LEKQMSDLRV-QLNFSAMASELEEVKRCMERKDKEKAHLAS---QVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAE 436
Cdd:pfam05483 372 LEKNEDQLKIiTMELQKKSSELEEMTKFKNNKEVELEELKKilaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 437 RKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTG 516
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQE----ASDMTLELKKHQEDIINCKK 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 517 KNNQILKEKDELKTQLYAALQQIENLRKELndvLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK 596
Cdd:pfam05483 528 QEERMLKQIENLEEKEMNLRDELESVREEF---IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 597 KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRD 676
Cdd:pfam05483 605 NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIA 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 677 EETATIITQLKLErdvHQRELKDLTSSLQSVKTKHEQNIQE------LMKHFKKEKSEA----ENHIRTLKAESLEEKNM 746
Cdd:pfam05483 685 DEAVKLQKEIDKR---CQHKIAEMVALMEKHKHQYDKIIEErdselgLYKNKEQEQSSAkaalEIELSNIKAELLSLKKQ 761
|
570 580
....*....|....*....|....*.
gi 767979865 747 AKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:pfam05483 762 LEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
156-369 |
3.55e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 3.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 156 DDMTQLHGFHQSLRDLSsEQIRLgddfnreLSRRSRSDAETKRALEELTEklNEAQKQEVVSDRVERRLQELEREMRTER 235
Cdd:COG4913 232 EHFDDLERAHEALEDAR-EQIEL-------LEPIRELAERYAAARERLAE--LEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 236 ELVERRQDQLglmslqlqEALKKQEAKADEHEGAIKNKLRQTETE-KNQLEQELELSRRLLNQSEGSRETLLHQVEELRT 314
Cdd:COG4913 302 AELARLEAEL--------ERLEARLDALREELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 767979865 315 QLTKAEGD----RKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLR 369
Cdd:COG4913 374 PLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
170-677 |
5.92e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.75 E-value: 5.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 170 DLSSEQIRLgDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGlMS 249
Cdd:PRK01156 191 KLKSSNLEL-ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS-ME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 250 LQLQEALKKQEAKADEHEG----AIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETL--LHQVEELRTQLTKAEGDR 323
Cdd:PRK01156 269 LEKNNYYKELEERHMKIINdpvyKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIkkLSVLQKDYNDYIKKKSRY 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 324 KGLQHQVSQISKQQSNYQD-----EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHL 398
Cdd:PRK01156 349 DDLNNQILELEGYEMDYNSylksiESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 399 ASQVENLtRELENGEKQQLQML---------------DRLKEIQNHFDT----CEAERKHADLQISELTRHAEDATKQAE 459
Cdd:PRK01156 429 NQRIRAL-RENLDELSRNMEMLngqsvcpvcgttlgeEKSNHIINHYNEkksrLEEKIREIEIEVKDIDEKIVDLKKRKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 460 RYLS-ELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEK-QSETVDELTGKNnqilkeKDELKTQLYAALQ 537
Cdd:PRK01156 508 YLESeEINKSINEYNKIESARADLE-DIKIKINELKDKHDKYEEIKNRyKSLKLEDLDSKR------TSWLNALAVISLI 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 538 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 617
Cdd:PRK01156 581 DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA 660
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767979865 618 ELK---KSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 677
Cdd:PRK01156 661 EIDsiiPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
451-681 |
5.96e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 5.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 451 AEDATKQAERYLSELQQSealKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:COG4942 18 QADAAAEAEAELEQLQQE---IAELEKELAALKKEEKALLKQ----LAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 531 QLYAALQQIENLRKELNDVLtkRALQEEELHSKEE----------------KLRDIKSHQADLELEVKNSLDTIHRLESE 594
Cdd:COG4942 91 EIAELRAELEAQKEELAELL--RALYRLGRQPPLAlllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 595 LKKQSKIQSQMKVEkahLEEEIAELKKSQAqdkakllEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 674
Cdd:COG4942 169 LEAERAELEALLAE---LEEERAALEALKA-------ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 767979865 675 RDEETAT 681
Cdd:COG4942 239 AAERTPA 245
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
753-952 |
9.31e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 9.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 753 QLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIG 832
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 833 KEIDAACKTfSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESE 912
Cdd:COG4942 108 ELLRALYRL-GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 767979865 913 LQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQ 952
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
389-794 |
1.04e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADL--QISELTRHAEDATKQAERYLSELQ 466
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 467 QSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKEL 546
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 547 NDVLTKRALQEEELHSKEE----KLRDIKSHQADLELEVKNSLDTI---------------HRLESELKKQSKIQSQMKV 607
Cdd:COG4717 237 EAAALEERLKEARLLLLIAaallALLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANklAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLK 687
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 688 LERDVHQRELKDLTSSLQSvktkHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEknmakihrgQLEKLKSQCDRLTEE 767
Cdd:COG4717 395 EEYQELKEELEELEEQLEE----LLGELEELLEALDEEELEEELEELEEELEELEE---------ELEELREELAELEAE 461
|
410 420
....*....|....*....|....*....
gi 767979865 768 LTQNENENK--KLKLKYQCLKDQLEEREK 794
Cdd:COG4717 462 LEQLEEDGElaELLQELEELKAELRELAE 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
240-570 |
1.12e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 240 RRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSE-----GSRETLLHQVEELRT 314
Cdd:COG4913 599 RSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWdeidvASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 315 QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKE 394
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 395 --KAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFdtceaeRKHADLQISELTRHAEDatkqAERYLSELQQseaLK 472
Cdd:COG4913 759 lgDAVERELRENLEERIDALRARLNRAEEELERAMRAF------NREWPAETADLDADLES----LPEYLALLDR---LE 825
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 473 EE--AEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknNQILKEKD---------ELKTQLYAALQQien 541
Cdd:COG4913 826 EDglPEYEERFKELLNENSIEFVADLLSKLRRAIREIKERIDPL----NDSLKRIPfgpgrylrlEARPRPDPEVRE--- 898
|
330 340 350
....*....|....*....|....*....|
gi 767979865 542 LRKELNDVLTKRALQEEELH-SKEEKLRDI 570
Cdd:COG4913 899 FRQELRAVTSGASLFDEELSeARFAALKRL 928
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
459-1017 |
1.17e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 459 ERYLSELQQSEALKEEAEKRREDLKLKAQESI--RQWKLKHKKLERalekqsETVDELTGKNNQilkEKDELKTQLYAAL 536
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVidLQTKLQEMQMER------DAMADIRRRESQ---SQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 537 QQIENLRKELNDVLTKRALQEEELH----SKEEKLRDIKSHQADLE------LEVKNSLDTIHrLESELKKQSKIQSQMK 606
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQLRkmmlSHEGVLQEIRSILVDFEeasgkkIYEHDSMSTMH-FRSLGSAISKILRELD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 607 VEKAHLE------EEIAELKKSQAQDKAKLL--EMQESIKDLsairadlankLAEEERAKKAVLKDLSDLTAQAKSRDEE 678
Cdd:pfam15921 231 TEISYLKgrifpvEDQLEALKSESQNKIELLlqQHQDRIEQL----------ISEHEVEITGLTEKASSARSQANSIQSQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 679 TATIITQLKLERDVHQRELKDLTSS-------LQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKihr 751
Cdd:pfam15921 301 LEIIQEQARNQNSMYMRQLSDLESTvsqlrseLREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD--- 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 752 gQLEKLKSQCDRLTEELTQNENENKKL-------KLKYQCLKDQLEEREKHISIEEEHLRRME-EARLQLKDQLLCLETE 823
Cdd:pfam15921 378 -QLQKLLADLHKREKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLKAMKsECQGQMERQMAAIQGK 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 824 QESILGVIGKEID-AACKTFSKDSVEKLK----VFSSGPDIHYDPHRWLAES--------------KTKLQWLCEELKER 884
Cdd:pfam15921 457 NESLEKVSSLTAQlESTKEMLRKVVEELTakkmTLESSERTVSDLTASLQEKeraieatnaeitklRSRVDLKLQELQHL 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 885 ENREKNLRHQLMLCrQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQPKLL-FKLppwe 963
Cdd:pfam15921 537 KNEGDHLRNVQTEC-EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQeFKI---- 611
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 767979865 964 dasqtaVRNQSEAQFEEKADRVIALETStQVALDHLESvpEKLSLLEDFKDFRD 1017
Cdd:pfam15921 612 ------LKDKKDAKIRELEARVSDLELE-KVKLVNAGS--ERLRAVKDIKQERD 656
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
176-578 |
1.18e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 176 IRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMslqlQEA 255
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK----EEL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 256 LKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTK--------AEGDRKGLq 327
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKEL- 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 328 hqVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:PRK03918 454 --LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 408 ELENGEKQQLQMLD-----------RLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLS-------ELQQSE 469
Cdd:PRK03918 532 EKLIKLKGEIKSLKkelekleelkkKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyneylELKDAE 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 470 ALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE-----TVDELTGKNNQILKEKDELKtQLYAALQQIENLRK 544
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElekkySEEEYEELREEYLELSRELA-GLRAELEELEKRRE 690
|
410 420 430
....*....|....*....|....*....|....
gi 767979865 545 ELNDVLTKRALQEEELHSKEEKLRDIKSHQADLE 578
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
209-751 |
1.20e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 209 EAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlglmSLQLQEALKKQEAKADEHEgaiknklrQTETEKNQLEQEL 288
Cdd:PRK02224 193 KAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQ----REQARETRDEADEVLEEHE--------ERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 289 ELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwrfrrgVEREKQDLEKQMSDL 368
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE-------LEDRDEELRDRLEEC 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 369 RVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELT 448
Cdd:PRK02224 334 RVAA--QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 449 RHAEDATKQAERYLSELQQSEA-LKEEAEKRREDLKLKAQ----------------ESIRQWKLKHKKLERALEKQSETV 511
Cdd:PRK02224 412 DFLEELREERDELREREAELEAtLRTARERVEEAEALLEAgkcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 512 DEltgknnqiLKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 591
Cdd:PRK02224 492 EE--------VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 592 ESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDkAKLLEMQESIKDLSAIRADLA-------NKLAE--------EER 656
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERIESLERIRTLL-AAIADAEDEIERLREKREALAelnderrERLAEkrerkrelEAE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 657 AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKT-----KHEQNIQELMKHFKKEKSEAEN 731
Cdd:PRK02224 643 FDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElrerrEALENRVEALEALYDEAEELES 722
|
570 580
....*....|....*....|
gi 767979865 732 HIRTLKAEsLEEKNMAKIHR 751
Cdd:PRK02224 723 MYGDLRAE-LRQRNVETLER 741
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
450-674 |
1.33e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 450 HAEDATKQAErylSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELK 529
Cdd:COG3883 13 FADPQIQAKQ---KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 530 TQLyAALQQIENLRKELNDVLTKRALQEeeLHSKEEKLRDIKSHQADLelevknsldtIHRLESELKKQSKIQSQMKVEK 609
Cdd:COG3883 90 ERA-RALYRSGGSVSYLDVLLGSESFSD--FLDRLSALSKIADADADL----------LEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767979865 610 AHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 674
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
486-680 |
2.08e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEE 565
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 566 KLRDIKSHQADLE-----LEVKNSLDTIHRLE----------SELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKL 630
Cdd:COG3883 91 RARALYRSGGSVSyldvlLGSESFSDFLDRLSalskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 767979865 631 LEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETA 680
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
252-470 |
3.04e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.56 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 252 LQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELE--LSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQ 329
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 330 VSQISKQQSNYQDEQGEDWRFR--RGVEREKQDLEKQMSDLRVQL--NFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYtpNHPDVIALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767979865 406 TRELENGEKQQLQMLDRLKEIQNHFDTCEAErkhadlqISELTRHAEDATKQAERYLSELQQSEA 470
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAE-------LRRLEREVEVARELYESLLQRLEEARL 379
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
451-825 |
5.42e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 5.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSetVDELTGKNNQILKEKDELKT 530
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEEL----EAELEELREELEKLEKLLQLLP--LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 531 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQ-ADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEK 609
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 610 AHLEEEIAELKKSQAQDKAKLL----------------------EMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSD 667
Cdd:COG4717 230 EQLENELEAAALEERLKEARLLlliaaallallglggsllslilTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 668 LTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQnIQELMKHFKKEKSEAENH--IRTLKAESLEEKN 745
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE-AEELEEELQLEELEQEIAalLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 746 MAKIHRGQLEKLKSQCDRLTEELTQNENENKKL--KLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETE 823
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
..
gi 767979865 824 QE 825
Cdd:COG4717 469 GE 470
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
165-449 |
5.54e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 5.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 165 HQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRT-ERELVERRQD 243
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSRIP 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 244 QLGLMSLQLQEALKKQEAKADEHEGAIKNKlrqtETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDR 323
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIEQKLNRL----TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 324 KGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLN-----FSAMASELEEVKRCMERKDKEKAHL 398
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSelkakLEALEEELSEIEDPKGEDEEIPEEE 950
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979865 399 AS------QVENLTRELENGE-------KQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR 449
Cdd:TIGR02169 951 LSledvqaELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
185-476 |
5.70e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.51 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 185 ELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELvERRQdqlglmslqlQEALKKQEAKAD 264
Cdd:pfam17380 328 EMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMREL-ERLQ----------MERQQKNERVRQ 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 265 EHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQqsnyqdeq 344
Cdd:pfam17380 397 ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ-------- 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 345 gEDWRFRRGVEREKQDLEKQMSDlrvQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLK 424
Cdd:pfam17380 469 -EEERKRKKLELEKEKRDRKRAE---EQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRK 544
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 767979865 425 EIQNHfdtcEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAE 476
Cdd:pfam17380 545 QQEME----ERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
200-725 |
8.17e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 8.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 200 LEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTET 279
Cdd:COG4913 237 LERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 280 EKNQLEQELELSRRLLNQSEGSR-ETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqQSNYQDEQGEDWRFRRGVEREK 358
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAAL---GLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 359 QDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELengekqqLQMLDRLkeiqnhfdtCEAERK 438
Cdd:COG4913 394 EALEEELEALEEAL--AEAEAALRDLRRELRELEAEIASLERRKSNIPARL-------LALRDAL---------AEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 439 HAD--------LQISELTRHAEDAtkqAERYLS----------------------------------ELQQSEALKEEAE 476
Cdd:COG4913 456 DEAelpfvgelIEVRPEEERWRGA---IERVLGgfaltllvppehyaaalrwvnrlhlrgrlvyervRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 477 KRREDLKLKAQES-IRQWklkhkkLERALEKQS-----ETVDELTG-----------KNNQILKEKD---ELKTQLY--- 533
Cdd:COG4913 533 PDSLAGKLDFKPHpFRAW------LEAELGRRFdyvcvDSPEELRRhpraitragqvKGNGTRHEKDdrrRIRSRYVlgf 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 534 ---AALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADL------ELEVKNSLDTIHRLESELKkqskiqsq 604
Cdd:COG4913 607 dnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAELE-------- 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 605 mKVEKAHleEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIIT 684
Cdd:COG4913 679 -RLDASS--DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 767979865 685 QLKLERDVHQRELKDLTSSLQSVKTK---HEQNIQELMKHFKKE 725
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRARlnrAEEELERAMRAFNRE 799
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
452-629 |
8.22e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.78 E-value: 8.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 452 EDATKQAERYlSELQQSEAlKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDEltgKNNQILKEKDELKtq 531
Cdd:PRK12704 45 EEAKKEAEAI-KKEALLEA-KEEIHKLRNEF----EKELRERRNELQKLEKRLLQKEENLDR---KLELLEKREEELE-- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 532 lyaalQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADlelEVKNSLdtIHRLESELKKqskiqsqmkvEKAH 611
Cdd:PRK12704 114 -----KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---EAKEIL--LEKVEEEARH----------EAAV 173
|
170
....*....|....*...
gi 767979865 612 LEEEIAELKKSQAQDKAK 629
Cdd:PRK12704 174 LIKEIEEEAKEEADKKAK 191
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
612-988 |
9.31e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 9.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 612 LEEEIAELKKsQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAK-KAVLKDLSDLTAQAKSRDEETATIITQLKLER 690
Cdd:COG1196 198 LERQLEPLER-QAEKAERYRELKEELKELEAELLLLKLRELEAELEElEAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 691 DVHQRELKDLTSSLQSVKTKHEQNIQELmKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQ 770
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDI-ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 771 NENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILG---VIGKEIDAACKTFSKDSV 847
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLErleRLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 848 EKLKVfssgpdihydpHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLL 927
Cdd:COG1196 436 EEEEE-----------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 928 DEIHREKRDLLEETQRKDEEMGSLQPKLLFKLPPWEDASQTAVRNQSEAQFEEKADRVIAL 988
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
434-769 |
1.03e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 49.57 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 434 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKlkaqESIRQWKLKHKKLERALEKQSETVDE 513
Cdd:COG5185 193 SELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPE----SELEDLAQTSDKLEKLVEQNTDLRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 514 LTGKNNQILKEKDELKTQLyaaLQQIENLRKELNDVlTKRALQEEELHSKEEKLR--DIKSHQADLELEVKNSLDtihRL 591
Cdd:COG5185 269 KLGENAESSKRLNENANNL---IKQFENTKEKIAEY-TKSIDIKKATESLEEQLAaaEAEQELEESKRETETGIQ---NL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 592 ESELKK-QSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQesikdLSAIRADLANKLAEEERAKKAVLKDLSDLTA 670
Cdd:COG5185 342 TAEIEQgQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDT-----IESTKESLDEIPQNQRGYAQEILATLEDTLK 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 671 QAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK---------------HEQNIQELMKHFKKEKSEAENHIRT 735
Cdd:COG5185 417 AADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREadeesqsrleeaydeINRSVRSKKEDLNEELTQIESRVST 496
|
330 340 350
....*....|....*....|....*....|....
gi 767979865 736 LKAEslEEKNMAKIHRgQLEKLKSQCDRLTEELT 769
Cdd:COG5185 497 LKAT--LEKLRAKLER-QLEGVRSKLDQVAESLK 527
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
276-794 |
1.05e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 276 QTETEKNQLEQELELSRRLLNQSEGSRETLlHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRfrrGVE 355
Cdd:TIGR00606 225 QITSKEAQLESSREIVKSYENELDPLKNRL-KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQ---GTD 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 356 REKQDLE--KQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTC 433
Cdd:TIGR00606 301 EQLNDLYhnHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 434 EAER-----KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQS 508
Cdd:TIGR00606 381 GFERgpfseRQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 509 ETVDELTGKNNQILKEKDELKTQLY------------AALQQIENLRKELNDVLTKRALQEEELH--------------- 561
Cdd:TIGR00606 461 KELQQLEGSSDRILELDQELRKAERelskaeknslteTLKKEVKSLQNEKADLDRKLRKLDQEMEqlnhhtttrtqmeml 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 562 -----SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQES 636
Cdd:TIGR00606 541 tkdkmDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 637 IKDLSAIRADLANKLAEE---ERAKKAVLKDLSDLtAQAKSRDEETATIITQLKLERD----VHQRELKDltsslqsvkt 709
Cdd:TIGR00606 621 LSSYEDKLFDVCGSQDEEsdlERLKEEIEKSSKQR-AMLAGATAVYSQFITQLTDENQsccpVCQRVFQT---------- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 710 khEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQL 789
Cdd:TIGR00606 690 --EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI 767
|
....*
gi 767979865 790 EEREK 794
Cdd:TIGR00606 768 EEQET 772
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
439-681 |
1.14e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 439 HADLQISELTRHAEDATKQAERYLSEL----QQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDEL 514
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELdalqAELEELNEEYNELQAELE-ALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 515 ------TGKNNQIL------KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVK 582
Cdd:COG3883 92 aralyrSGGSVSYLdvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 583 NsldtihrLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVL 662
Cdd:COG3883 172 E-------LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
250
....*....|....*....
gi 767979865 663 KDLSDLTAQAKSRDEETAT 681
Cdd:COG3883 245 SAAGAGAAGAAGAAAGSAG 263
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
418-647 |
1.47e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 418 QMLDRLKEIQNHFDTceaerkhadlqISELTRHAEDATKQAERyLSELQQSEALKEEAEKRREDLK--------LKAQES 489
Cdd:COG4913 222 DTFEAADALVEHFDD-----------LERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEylraalrlWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA--------LQQIENLRKELNDVLTKRALQEEELH 561
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 562 SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ----SKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESI 637
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250
....*....|.
gi 767979865 638 KD-LSAIRADL 647
Cdd:COG4913 450 AEaLGLDEAEL 460
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
218-576 |
1.48e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLR---QTETEKNQLEQELELSRRL 294
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRlfdEKQSEKDKKNKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 295 LNQsegsretllhqveelrtQLTKAEGDRKGLQHQVSQISKQQSNYQDE-QGEDWRFRRGVEREKQDLEKQMSDLRVQLn 373
Cdd:pfam12128 680 ANE-----------------RLNSLEAQLKQLDKKHQAWLEEQKEQKREaRTEKQAYWQVVEGALDAQLALLKAAIAAR- 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 374 FSAMASELEEVKRCMERKDKEK-------AHLASQVENLTRELENGEKQQLQMLdRLKEIQNHfdTCEAERKHADLQISE 446
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASLgvdpdviAKLKREIRTLERKIERIAVRRQEVL-RYFDWYQE--TWLQRRPRLATQLSN 818
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 447 LTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQseTVDELTGKNNQILKEKD 526
Cdd:pfam12128 819 IERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDA--NSEQAQGSIGERLAQLE 896
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 767979865 527 ELKTQLYAALQQIENLRKELNDVLTKraLQEEELHSKEEKLRDIKSHQAD 576
Cdd:pfam12128 897 DLKLKRDYLSESVKKYVEHFKNVIAD--HSGSGLAETWESLREEDHYQND 944
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
271-948 |
1.53e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 271 KNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRF 350
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 351 RRGVErEKQDLEKQMSDLRVQLNFS----AMASELEEVKRCMERKDKEKAHLASQVENLTREL---ENGEKQQLQMLDRL 423
Cdd:TIGR00618 266 RARIE-ELRAQEAVLEETQERINRArkaaPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLmkrAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 424 KEIQNHFDTCEAERKHADLQISELtrhaedatKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERA 503
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIR--------EISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 504 LEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEElhSKEEKLRDIKSHQADLELEVKN 583
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE--QQLQTKEQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 584 SLDTIHRLESELKKQSKIQSQmkveKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLK 663
Cdd:TIGR00618 495 RLLELQEEPCPLCGSCIHPNP----ARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 664 DLSDLTAQAKSRDEETATIITQLKLERDVHQRELKD-----LTSSLQSVKTKHEQNIQELMKH---FKKEKSEAENHIRT 735
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAedmlaCEQHALLRKLQPEQDLQDVRLHlqqCSQELALKLTALHA 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 736 LKAESLEEKnmakihrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKD 815
Cdd:TIGR00618 651 LQLTLTQER--------VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 816 QLLCLETE------QESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREK 889
Cdd:TIGR00618 723 IENASSSLgsdlaaREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767979865 890 NLRHQLMLCR---QQLRNLT-ENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEM 948
Cdd:TIGR00618 803 TLEAEIGQEIpsdEDILNLQcETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLT 865
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
173-587 |
3.28e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 3.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 173 SEQIRLGDDFNRElSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQL 252
Cdd:PTZ00121 1479 AEEAKKADEAKKK-AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 253 QEALKKQEAKADEHEGAIKN-KLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRT---QLTKAEGDRKGLQH 328
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkaeELKKAEEEKKKVEQ 1637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 329 QVSQISKQQSNYQD--EQGEDWRFRRGVEREKQDLEKQMSDlrvqlnfsaMASELEEVKRCMERKDKEKAHLASQVENLT 406
Cdd:PTZ00121 1638 LKKKEAEEKKKAEElkKAEEENKIKAAEEAKKAEEDKKKAE---------EAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 407 RELENGEKQQLQMldRLKEIQNHFDTCEAERKHadlqiSELTRHAEDATKQAErylsELQQSEALKEEAEKRREDLKlKA 486
Cdd:PTZ00121 1709 KKEAEEKKKAEEL--KKAEEENKIKAEEAKKEA-----EEDKKKAEEAKKDEE----EKKKIAHLKKEEEKKAEEIR-KE 1776
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 487 QESIRQWKLKHKKLERALEKQ---------SETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQE 557
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRMEVDkkikdifdnFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNK 1856
|
410 420 430
....*....|....*....|....*....|.
gi 767979865 558 EELHSKE-EKLRDIKSHQADLELEVKNSLDT 587
Cdd:PTZ00121 1857 NNENGEDgNKEADFNKEKDLKEDDEEEIEEA 1887
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
527-682 |
3.68e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 3.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 527 ELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK--KQSKIQSQ 604
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNKEYEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767979865 605 MKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDL-SDLTAQAKSRDEETATI 682
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELeAELEELEAEREELAAKI 172
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
227-665 |
3.87e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 227 LEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAiknkLRQTETEKNQLEQELELSRRLLNQSEGSRETL- 305
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEE----YAELQEELEELEEELEELEAELEELREELEKLe 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 306 -LHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQM--SDLRVQLNFSAMASELE 382
Cdd:COG4717 123 kLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLeqLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 383 EVKRCMERKDKEKAHLASQVENLTRELENGEKQQL--QMLDRLKEIQNHFDT----CEAERKHADLQISELTRHAEDATK 456
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEaaALEERLKEARLLLLIaaalLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 457 QAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKhkKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAAL 536
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE--ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 537 QQ--IENLRKELNDVLTKRALQEEE----LHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELkkqskiqsqmkvEKA 610
Cdd:COG4717 361 EElqLEELEQEIAALLAEAGVEDEEelraALEQAEEYQELKEELEELEEQLEELLGELEELLEAL------------DEE 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLAN-----KLAEEERAKKAVLKDL 665
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgelaELLQELEELKAELREL 488
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
413-668 |
4.78e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 47.38 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 413 EKQQLQMLDR-------LKEIQNHFdtceAERKHADLQISELTRHAEDATKQAERY---LSELQQSeALKE------EAE 476
Cdd:COG0497 140 PDAQRELLDAfagleelLEEYREAY----RAWRALKKELEELRADEAERARELDLLrfqLEELEAA-ALQPgeeeelEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 477 KRR----EDLKLKAQESIRQwkLKH---------KKLERALEKQSETVDELtgknnqilkekDELKTQLYAALQQIENLR 543
Cdd:COG0497 215 RRRlsnaEKLREALQEALEA--LSGgeggaldllGQALRALERLAEYDPSL-----------AELAERLESALIELEEAA 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 544 KELNDVLTKRALQEEELHSKEEKLRDIKS----HQADLElEVknsLDTIHRLESELKKQSkiqsqmkvekaHLEEEIAEL 619
Cdd:COG0497 282 SELRRYLDSLEFDPERLEEVEERLALLRRlarkYGVTVE-EL---LAYAEELRAELAELE-----------NSDERLEEL 346
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 767979865 620 KKSQAQDKAKLLEMQEsikDLSAIRADLANKLAeeerakKAVLKDLSDL 668
Cdd:COG0497 347 EAELAEAEAELLEAAE---KLSAARKKAAKKLE------KAVTAELADL 386
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
408-1007 |
6.13e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 408 ELENGEKQQLQMLDrlKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSE-LQQSEALKEEAEKRREDLKLkA 486
Cdd:pfam12128 283 ETSAELNQLLRTLD--DQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPSWQSELEN-L 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 487 QESIRQWKLKHKKLERALEKQ-----SETVDELTGKNNQ---ILKEKDELKTQLYAALQQIEN-LRKELNDVLTKRALQE 557
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRrskikEQNNRDIAGIKDKlakIREARDRQLAVAEDDLQALESeLREQLEAGKLEFNEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 558 EELHSK--EEKLR-DIKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDK-----AK 629
Cdd:pfam12128 440 YRLKSRlgELKLRlNQATATPELLLQLENFDERIERAREEQEAANA-----EVERLQSELRQARKRRDQASEAlrqasRR 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 630 LLEMQESIKDLSAIRADLANKLAEEERAKKAVLK---------------DLSDLTAQAKSRDEETATIITqLKLER---- 690
Cdd:pfam12128 515 LEERQSALDELELQLFPQAGTLLHFLRKEAPDWEqsigkvispellhrtDLDPEVWDGSVGGELNLYGVK-LDLKRidvp 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 691 ------DVHQRELKDLTSSLQSVKTKHEQNIQELM---KHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEK----L 757
Cdd:pfam12128 594 ewaaseEELRERLDKAEEALQSAREKQAAAEEQLVqanGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKknkaL 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEArlQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEG--ALDAQLALLKAAIAARRSGAKAELKA 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 838 aCKTFSKDSVEKLKVfssGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLF 917
Cdd:pfam12128 752 -LETWYKRDLASLGV---DPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQ 827
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 918 QQIERQEQ----LLDEIHREKRDLLEETQRKDEEMGSL---QPKLLFKLPPWEDASQTAVRNQSEAQFEEKADRVIALET 990
Cdd:pfam12128 828 QQLARLIAdtklRRAKLEMERKASEKQQVRLSENLRGLrceMSKLATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSE 907
|
650
....*....|....*..
gi 767979865 991 STQVALDHLESVPEKLS 1007
Cdd:pfam12128 908 SVKKYVEHFKNVIADHS 924
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
500-715 |
6.16e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 6.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 500 LERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEEKLRDIKSHQADLEL 579
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP---SAALNKLNTAAAKIKS 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 580 EVKnSLDTIHR--------------LESELKKQSKIQSQMKVekahLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRA 645
Cdd:PHA02562 270 KIE-QFQKVIKmyekggvcptctqqISEGPDRITKIKDKLKE----LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKN 344
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979865 646 DLANK---LAEEERAKKAVLKDLSDLTAQAKSRDEETATIitqlklerdvhQRELKDLTSSLQS-VKTKHEQNI 715
Cdd:PHA02562 345 KISTNkqsLITLVDKAKKVKAAIEELQAEFVDNAEELAKL-----------QDELDKIVKTKSElVKEKYHRGI 407
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
180-808 |
6.66e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 6.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 180 DDFNRELSRRSRSDAET-KRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEAlkk 258
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTaAQLCADLQSKERLKQEQ---ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL--- 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 259 qeakadehEGAIKNKLrqteteknQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRK---------GLQHQ 329
Cdd:TIGR00606 467 --------EGSSDRIL--------ELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKlrkldqemeQLNHH 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 330 VSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDL----RVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:TIGR00606 531 TTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHI 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 406 TRELENGEKQQLQMLDRLkeiqnhFDTCEAERKHADLQisELTRHAEDATKQ-------AERYLSELQQSEALKE----- 473
Cdd:TIGR00606 611 NNELESKEEQLSSYEDKL------FDVCGSQDEESDLE--RLKEEIEKSSKQramlagaTAVYSQFITQLTDENQsccpv 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 474 -----EAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 548
Cdd:TIGR00606 683 cqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR 762
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 549 VLTKRALQEEELHSKEEKLRDIKSHQADLELevknsldtIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:TIGR00606 763 LKNDIEEQETLLGTIMPEEESAKVCLTDVTI--------MERFQMELKDVER-----KIAQQAAKLQGSDLDRTVQQVNQ 829
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 629 KLLEMQESIKDLSAiRADLANKLAEEERAKKAVLKD-----------LSDLTAQAKSRDEETATIITQLK-LERDVHQRe 696
Cdd:TIGR00606 830 EKQEKQHELDTVVS-KIELNRKLIQDQQEQIQHLKSktnelkseklqIGTNLQRRQQFEEQLVELSTEVQsLIREIKDA- 907
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 697 lKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESleeKNMAKIHRGQLEKLKSQCDRlteELTQNENENK 776
Cdd:TIGR00606 908 -KEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV---KNIHGYMKDIENKIQDGKDD---YLKQKETELN 980
|
650 660 670
....*....|....*....|....*....|..
gi 767979865 777 KLKLkyqclkdQLEEREKHISIEEEHLRRMEE 808
Cdd:TIGR00606 981 TVNA-------QLEECEKHQEKINEDMRLMRQ 1005
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
210-814 |
7.51e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 7.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 210 AQKQEVvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKadEHEGAIKNKLRQTETEKNQLEQELE 289
Cdd:pfam12128 218 LNRQQV--EHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYK--SDETLIASRQEERQETSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 290 LSRRLLNQSegsretllhqVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfrrGVEREKQDLEkQMSDLR 369
Cdd:pfam12128 294 TLDDQWKEK----------RDELNGELSAADAAVAKDRSELEALEDQHGAFLDA---------DIETAAADQE-QLPSWQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 370 VQL-NFSAMASELEEVKRCMERK-DKEKAHLASQVENLTRELENGEKQQLQMLDRLK-EIQNHFDTCEAERKHadlQISE 446
Cdd:pfam12128 354 SELeNLEERLKALTGKHQDVTAKyNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLaVAEDDLQALESELRE---QLEA 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 447 LTRHAEDATKQAERYLSELQ--------------QSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVD 512
Cdd:pfam12128 431 GKLEFNEEEYRLKSRLGELKlrlnqatatpelllQLENFDERIERAREEQE-AANAEVERLQSELRQARKRRDQASEALR 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 513 ELTGKNNQILKEKDELKTQLYAALQQ-IENLRKELND-------VLTKRALQEEELH--------SKEEKLRDIKSH--- 573
Cdd:pfam12128 510 QASRRLEERQSALDELELQLFPQAGTlLHFLRKEAPDweqsigkVISPELLHRTDLDpevwdgsvGGELNLYGVKLDlkr 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 574 -----QADLELEVKNSLDtihRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLA 648
Cdd:pfam12128 590 idvpeWAASEEELRERLD---KAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEK 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 649 NKLAEE-ERAKKAVLKDLSDLTAQAK-----------SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQ 716
Cdd:pfam12128 667 DKKNKAlAERKDSANERLNSLEAQLKqldkkhqawleEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 717 ELMKHFKKEKSeaenhiRTLKAESLEEKNMAKIHRG--QLEKLKSQCDRLTEELTQNEN-ENKKLKLKYQCLKDQLEERE 793
Cdd:pfam12128 747 AELKALETWYK------RDLASLGVDPDVIAKLKREirTLERKIERIAVRRQEVLRYFDwYQETWLQRRPRLATQLSNIE 820
|
650 660
....*....|....*....|..
gi 767979865 794 KHIS-IEEEHLRRMEEARLQLK 814
Cdd:pfam12128 821 RAISeLQQQLARLIADTKLRRA 842
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
180-675 |
7.79e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQevVSDRVERRLQELEREMRTERELVERRQDQLGlmslQLQEALKKQ 259
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRA----RLEALLAAL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 260 EAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGsretllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN 339
Cdd:COG4913 372 GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA-------ALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 340 YQD-----------------------EQGEDWR-----------------------FRRGVEREKqdlekqmsdLRVQLN 373
Cdd:COG4913 445 LRDalaealgldeaelpfvgelievrPEEERWRgaiervlggfaltllvppehyaaALRWVNRLH---------LRGRLV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 374 FsamaselEEVKRCMERKDKEKAHLASqvenLTRELENGEKQQLQMLDRlkEIQNHFD--TCEAER--KHADLQISE--L 447
Cdd:COG4913 516 Y-------ERVRTGLPDPERPRLDPDS----LAGKLDFKPHPFRAWLEA--ELGRRFDyvCVDSPEelRRHPRAITRagQ 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 448 TRHAEDA-TKQAERYLSELQQseaLKEEAEKRREDLKLKAQEsirqwklkhkkLERALEKQSETVDELTgknnqilKEKD 526
Cdd:COG4913 583 VKGNGTRhEKDDRRRIRSRYV---LGFDNRAKLAALEAELAE-----------LEEELAEAEERLEALE-------AELD 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 527 ELKTQLyAALQQIENLRKELNDVLTkralQEEELHSKEEKLRDIKSHQADL-ELEvknslDTIHRLESELKKQSKIQSQM 605
Cdd:COG4913 642 ALQERR-EALQRLAEYSWDEIDVAS----AEREIAELEAELERLDASSDDLaALE-----EQLEELEAELEELEEELDEL 711
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 606 KVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR 675
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRAR 781
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
198-548 |
8.27e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.97 E-value: 8.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 198 RALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERElvERRQDQLGLMSLQL-QEALKK-----QEAKADEHEgaiK 271
Cdd:PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERD--EPRSVPPNMSTDALeQEILQVssqllEKSRQAQQE---Q 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 272 NKLRQTETEKNQLEQELELSRRLLN------QSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISkqqSNYQDEQG 345
Cdd:PRK10929 130 DRAREISDSLSQLPQQQTEARRQLNeierrlQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLS---ANNRQELA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 346 edwRFRRGV-EREKQDLEKQMSDLRVQLNFSAMaselEEVKRCMERKDKekahLASQVENL----------TRELENGEK 414
Cdd:PRK10929 207 ---RLRSELaKKRSQQLDAYLQALRNQLNSQRQ----REAERALESTEL----LAEQSGDLpksivaqfkiNRELSQALN 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 415 QQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDAT-------KQAERyLSELQQSEALKEEAEKRR------ED 481
Cdd:PRK10929 276 QQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNalgealrAQVAR-LPEMPKPQQLDTEMAQLRvqrlryED 354
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979865 482 LkLKAQESIRQWKLKH-----KKLERALEKQSETVDEL-----TGKNNQILkekdELkTQLYAALQQIENLRKELND 548
Cdd:PRK10929 355 L-LNKQPQLRQIRQADgqpltAEQNRILDAQLRTQRELlnsllSGGDTLIL----EL-TKLKVANSQLEDALKEVNE 425
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
211-668 |
8.30e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 8.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 211 QKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKnKLRQTETEKNQLEQELEL 290
Cdd:pfam01576 204 QELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALK-KIRELEAQISELQEDLES 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 291 SRRLLNQSEGSRETLLHQVEELRTQLTKA-------------------------EGDRKGLQHQVSQISKQQSNYQDEQG 345
Cdd:pfam01576 283 ERAARNKAEKQRRDLGEELEALKTELEDTldttaaqqelrskreqevtelkkalEEETRSHEAQLQEMRQKHTQALEELT 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 346 EDW----RFRRGVEREKQDLEKQMSDLRVQLnfsamaSELEEVKRCMERKDKEkahLASQVENLTRELENGEKQQLQMLD 421
Cdd:pfam01576 363 EQLeqakRNKANLEKAKQALESENAELQAEL------RTLQQAKQDSEHKRKK---LEGQLQELQARLSESERQRAELAE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 422 RLKEIQNHFDTCEAerkhadlQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRredlKLKAQESIRQWKLKHKKLE 501
Cdd:pfam01576 434 KLSKLQSELESVSS-------LLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQ----KLNLSTRLRQLEDERNSLQ 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 502 RALEKQSETVDELTGKNNQILKEKDELKTQL---YAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSH-QADL 577
Cdd:pfam01576 503 EQLEEEEEAKRNVERQLSTLQAQLSDMKKKLeedAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRlQQEL 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 578 ElEVKNSLDTIHRLESELKKQskiqsQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRA--DLANKLAEEE 655
Cdd:pfam01576 583 D-DLLVDLDHQRQLVSNLEKK-----QKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARAleEALEAKEELE 656
|
490
....*....|...
gi 767979865 656 RAKKAVLKDLSDL 668
Cdd:pfam01576 657 RTNKQLRAEMEDL 669
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
153-644 |
1.09e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSR---------SDAETKRALEELTEKLNEAQKQEVVSDRVERR 223
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHihtlqqqktTLTQKLQSLCKELDILQREQATIDTRTSAFRD 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 224 LQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQE-----LELSRRLLNQS 298
Cdd:TIGR00618 422 LQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQEtrkkaVVLARLLELQE 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 299 E---------------------GSRETLLHQVEELRTQLTKAEGDRKG-LQHQVSQISKQQSNYQDEQGEDWRFRRGVER 356
Cdd:TIGR00618 502 EpcplcgscihpnparqdidnpGPLTRRMQRGEQTYAQLETSEEDVYHqLTSERKQRASLKEQMQEIQQSFSILTQCDNR 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 357 EKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKahLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAE 436
Cdd:TIGR00618 582 SKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK--LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQER 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 437 RKHADLQISELTRHAEDATKQAERYL-SELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELT 515
Cdd:TIGR00618 660 VREHALSIRVLPKELLASRQLALQKMqSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARED 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 516 GKNNQILKEKDELKTQLYA--------------ALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEV 581
Cdd:TIGR00618 740 ALNQSLKELMHQARTVLKArteahfnnneevtaALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDIL 819
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767979865 582 KNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIR 644
Cdd:TIGR00618 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGIN 882
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-730 |
1.15e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQiSELTRhAEDATKQAERYLSELQQS 468
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAE-REIAE-LEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 469 EALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 548
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 549 VLTKRALQEEELHSKEEKLRDI-KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQmkvEKAHLEEEIAELKKSQAQDK 627
Cdd:COG4913 771 LEERIDALRARLNRAEEELERAmRAFNREWPAETADLDADLESLPEYLALLDRLEED---GLPEYEERFKELLNENSIEF 847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 628 akllemqesikdlsaiRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVH--QRELKDLTSSLQ 705
Cdd:COG4913 848 ----------------VADLLSKLRRAIREIKERIDPLNDSLKRIPFGPGRYLRLEARPRPDPEVRefRQELRAVTSGAS 911
|
330 340
....*....|....*....|....*....
gi 767979865 706 ----SVKTKHEQNIQELMKHFKKEKSEAE 730
Cdd:COG4913 912 lfdeELSEARFAALKRLIERLRSEEEESD 940
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
708-1024 |
1.17e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 708 KTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEknmakihrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKD 787
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKREYEGYELLKEKEALER---------QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 788 QLEEREKHISieeehlRRMEEARLQLKDQLLCLETEQESILGVIgkeidAACKTFSKDSVEKLKVFSSGPDIHYDPHRWL 867
Cdd:TIGR02169 273 LLEELNKKIK------DLGEEEQLRVKEKIGELEAEIASLERSI-----AEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 868 AESKTKLQWLCEELKErenREKNLRHQLMLCRQQLRNL-TENKES--ELQCLFQQIERQEQLLDEIHREKRDLLEETQRK 944
Cdd:TIGR02169 342 EREIEEERKRRDKLTE---EYAELKEELEDLRAELEEVdKEFAETrdELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 945 DEEMGSLQPKLlfklppwedASQTAVRNQSEAQFEEKADRVIALETSTQVALDHLESVPEKLS-LLEDFKDFRDSCSSSE 1023
Cdd:TIGR02169 419 SEELADLNAAI---------AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYdLKEEYDRVEKELSKLQ 489
|
.
gi 767979865 1024 R 1024
Cdd:TIGR02169 490 R 490
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
392-612 |
1.19e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 392 DKEKAHLASQVENLTRELENGEKQQLQMLDRLkeiQNHFDTCEAERKHADLQISELTRHAEDATKQAERYlselqqSEAL 471
Cdd:PHA02562 187 DMKIDHIQQQIKTYNKNIEEQRKKNGENIARK---QNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP------SAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 472 KEEAEKRredLKLKAQesIRQWKLKHKKLE---------RALEKQSETVDELTGKNNQILKEKDELKTQlYAALQQIEN- 541
Cdd:PHA02562 258 NKLNTAA---AKIKSK--IEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTA-IDELEEIMDe 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979865 542 ---LRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHL 612
Cdd:PHA02562 332 fneQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
463-825 |
1.45e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 463 SELQQSEALKEEAEKRREDLKLKAQEsirqwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENL 542
Cdd:PRK02224 220 EEIERYEEQREQARETRDEADEVLEE--------HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 543 RKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKS 622
Cdd:PRK02224 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 623 QAQDKAKLLEMQESIKDLsairadlanklaEEErakkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS 702
Cdd:PRK02224 372 LEEAREAVEDRREEIEEL------------EEE------IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 703 SLQSVKTKHEQNiQELMKHFK----KEKSEAENHIRTL-----KAESLEEknmakihrgQLEKLKSQCDRLTEELTQNEn 773
Cdd:PRK02224 434 TLRTARERVEEA-EALLEAGKcpecGQPVEGSPHVETIeedreRVEELEA---------ELEDLEEEVEEVEERLERAE- 502
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 767979865 774 ENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQE 825
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
355-712 |
1.69e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 355 EREKQDLEKQMSDLRVQlnfsamaSELEEVKRCMERKdkekahlasqvenltRELENGEKQQLQMLDRLKEIQNHFDTCE 434
Cdd:pfam17380 286 ERQQQEKFEKMEQERLR-------QEKEEKAREVERR---------------RKLEEAEKARQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 435 AERkhadlqiseltrhaedatkqaERYLSELQQSEALKEEAEKRREDLklkAQESIRQWKLKHKKLERAlEKQSETVDEL 514
Cdd:pfam17380 344 MER---------------------ERELERIRQEERKRELERIRQEEI---AMEISRMRELERLQMERQ-QKNERVRQEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 515 TGKNNQILKEKdELKTQLYAALQQIENLRKElndvlTKRALQEEELHSKEEKLRDIKSHQADlELEVKNSLDTIHRLESE 594
Cdd:pfam17380 399 EAARKVKILEE-ERQRKIQQQKVEMEQIRAE-----QEEARQREVRRLEEERAREMERVRLE-EQERQQQVERLRQQEEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 595 LKKQSKIQSQMKVEKAHLEEEIAE-LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAK 673
Cdd:pfam17380 472 RKRKKLELEKEKRDRKRAEEQRRKiLEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*....
gi 767979865 674 SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHE 712
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
391-553 |
2.05e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 391 KDKEKAHLASQVENLTR--ELENGEKQQLQmlDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQS 468
Cdd:PRK09039 51 KDSALDRLNSQIAELADllSLERQGNQDLQ--DSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 469 EALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEkQSETVDEltGKNNQIlkekDELKTQLYAAL----QQIENLRK 544
Cdd:PRK09039 129 KQVSARALAQVELL----NQQIAALRRQLAALEAALD-ASEKRDR--ESQAKI----ADLGRRLNVALaqrvQELNRYRS 197
|
170
....*....|...
gi 767979865 545 E----LNDVLTKR 553
Cdd:PRK09039 198 EffgrLREILGDR 210
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-415 |
2.11e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQ 259
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 260 EAkadehegAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN 339
Cdd:COG4942 103 KE-------ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767979865 340 YQDEQGEdwrfrrgVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQ 415
Cdd:COG4942 176 LEALLAE-------LEEERAALEALKAERQKLLA--RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
210-458 |
2.11e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 210 AQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGlmslQLQEALKKQEAKadehegaiknkLRQTETEKNQLEQELE 289
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEK----ALLKQLAALERR-----------IAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 290 LSRRLLNQSEGSRETLLHQVEELRTQLTK--AEGDRKGLQHQVSQISKQQSNYQDEqgedwRFRRGVEREKQDLEKQMSD 367
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAEllRALYRLGRQPPLALLLSPEDFLDAV-----RRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 368 LRVQLNfsamasELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL----KEIQNHFDTCEAERKHADLQ 443
Cdd:COG4942 155 LRADLA------ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLekelAELAAELAELQQEAEELEAL 228
|
250
....*....|....*
gi 767979865 444 ISELTRHAEDATKQA 458
Cdd:COG4942 229 IARLEAEAAAAAERT 243
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
517-975 |
2.67e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 517 KNNQILKEKDELKTQLYAALQQIENLRKELNDvltkralQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK 596
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNK-------DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 597 KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLtaqaKSRD 676
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLL----EKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 677 EETATIITQLKLERdvhqRELKDLTSSLQSVKTKHEQNIQELMkHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEK 756
Cdd:TIGR04523 183 LNIQKNIDKIKNKL----LKLELLLSNLKKKIQKNKSLESQIS-ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 757 LKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEhlRRMEEARLQLKDQLlcleTEQESILGVIGKEID 836
Cdd:TIGR04523 258 LKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN--QKEQDWNKELKSEL----KNQEKKLEEIQNQIS 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 837 AACKTFS--KDSVEKLKvfssgpdihydphRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESelq 914
Cdd:TIGR04523 332 QNNKIISqlNEQISQLK-------------KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIND--- 395
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 915 cLFQQIERQEQLldeihrekrdlleeTQRKDEEMGSLQPKLLFKLPPWEDASQTAVRNQSE 975
Cdd:TIGR04523 396 -LESKIQNQEKL--------------NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-700 |
2.94e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT-----QLYAALQQIENLRKELNDVLTKRALQ--EEELHS 562
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELlepirELAERYAAARERLAELEYLRAALRLWfaQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 563 KEEKLRDIKSHQADLELEV---KNSLDTIHRLESELKKQskIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD 639
Cdd:COG4913 293 LEAELEELRAELARLEAELerlEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 640 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 700
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
183-569 |
3.22e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 183 NRELSRRSRSDAETKRalEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALkkqeak 262
Cdd:PRK02224 347 LREDADDLEERAEELR--EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR------ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 263 adEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQS---------EGSreTLLHQVEELRTQLTKAEGDRKGLQHQVSQI 333
Cdd:PRK02224 419 --EERDELREREAELEATLRTARERVEEAEALLEAGkcpecgqpvEGS--PHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 334 SKQQSNYQDEQGEDWRFRRGVEReKQDLEKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELENGE 413
Cdd:PRK02224 495 EERLERAEDLVEAEDRIERLEER-REDLEELIAERR---------ETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 414 KQQLQMLDRLKEIQNHFDTCEAERKHADlQISELTRHAEDATKQAERY------LSEL--QQSEALKEEAEKRREDLKLK 485
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLrekreaLAELndERRERLAEKRERKRELEAEF 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyAALQQIENLRKELnDVLTKRALQEEELHSKEE 565
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE----NELEELEELRERR-EALENRVEALEALYDEAE 718
|
....
gi 767979865 566 KLRD 569
Cdd:PRK02224 719 ELES 722
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
218-567 |
3.51e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA------IKNKLRQTET-EKNQLEQElEL 290
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAsdhlnlVQTALRQQEKiERYQEDLE-EL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 291 SRRLLNQSEgsretllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQdeQGEDWRFRRGVEREK--QDLEK----- 363
Cdd:COG3096 360 TERLEEQEE--------VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQ--QALDVQQTRAIQYQQavQALEKaralc 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 364 QMSDLRV------QLNFSAMASELEEVKRCMERK-DKEKAHlASQ-------VENLTRELENGE--KQQLQMLDRLKEIQ 427
Cdd:COG3096 430 GLPDLTPenaedyLAAFRAKEQQATEEVLELEQKlSVADAA-RRQfekayelVCKIAGEVERSQawQTARELLRRYRSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 428 NHFDTCEA-ERKHADL-----QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwklkHKKLE 501
Cdd:COG3096 509 ALAQRLQQlRAQLAELeqrlrQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQ----RSELR 584
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767979865 502 RALEKQSETVDELTGKNNQILKEKD---ELKTQLYAAL---QQIENLRKELNDVLTKRALQEEELHSKEEKL 567
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLAAQDaleRLREQSGEALadsQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
221-817 |
3.65e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 221 ERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA------IKNKLRQTETEKNQLEQELELSRRL 294
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATrhlcnlLKETCARSAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 295 LNQSEGSRETLLHQVEELRTQltkAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfrrgVEREKQDLEKQMSDLRVQLNF 374
Cdd:pfam05483 185 YMDLNNNIEKMILAFEELRVQ---AENARLEMHFKLKEDHEKIQHLEEE----------YKKEINDKEKQVSLLLIQITE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 375 SamaseleevkrcmERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFdTCEAERKHADLQISELTRHA-ED 453
Cdd:pfam05483 252 K-------------ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHL-TKELEDIKMSLQRSMSTQKAlEE 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 454 ATKQAERYLSEL-QQSEALKEEAEKRR-----------------EDLKLKAQESIRQWKLKHKKLERALEKQSETVDELT 515
Cdd:pfam05483 318 DLQIATKTICQLtEEKEAQMEELNKAKaahsfvvtefeattcslEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMT 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 516 GKNNQILKEKDELKT------QLYAALQQIENLRKEL----NDVLTKRALQEEELH-----------SKEEKLRDIKSHQ 574
Cdd:pfam05483 398 KFKNNKEVELEELKKilaedeKLLDEKKQFEKIAEELkgkeQELIFLLQAREKEIHdleiqltaiktSEEHYLKEVEDLK 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 575 ADLELE-VKNSLDTIH--RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQdkaklleMQESIKDLSAIRADLANKL 651
Cdd:pfam05483 478 TELEKEkLKNIELTAHcdKLLLENKELTQEASDMTLELKKHQEDIINCKKQEER-------MLKQIENLEEKEMNLRDEL 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 652 aeeeRAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFK--KEKSEA 729
Cdd:pfam05483 551 ----ESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKalKKKGSA 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 730 ENhirtlkaeslEEKNMAKIHRGQLEKLKSQCDRLTEELTqnENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEA 809
Cdd:pfam05483 627 EN----------KQLNAYEIKVNKLELELASAKQKFEEII--DNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEI 694
|
....*...
gi 767979865 810 RLQLKDQL 817
Cdd:pfam05483 695 DKRCQHKI 702
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
251-796 |
3.93e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 251 QLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEElRTQLTKAEGDRKGLQHQV 330
Cdd:pfam05483 78 RLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEE-EIQENKDLIKENNATRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 331 SQISKQQSNYQDEQGEDWRFRRGVERE-KQDLEKQMSdlRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTREL 409
Cdd:pfam05483 157 CNLLKETCARSAEKTKKYEYEREETRQvYMDLNNNIE--KMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 410 ENGEKQQLQMLdrlkeiqnHFDTCEAERKHADLQIseLTRHAEDATKQAERYLSelQQSEALKEEAEKRR------EDLK 483
Cdd:pfam05483 235 INDKEKQVSLL--------LIQITEKENKMKDLTF--LLEESRDKANQLEEKTK--LQDENLKELIEKKDhltkelEDIK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 484 LKAQESIRqwklKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLtKRALQEEELHSK 563
Cdd:pfam05483 303 MSLQRSMS----TQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELL-RTEQQRLEKNED 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 564 EEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQEsiKDLSAI 643
Cdd:pfam05483 378 QLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQARE--KEIHDL 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 644 RADLANKLAEEERAKKAVlKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVK------TKHEQNIQE 717
Cdd:pfam05483 456 EIQLTAIKTSEEHYLKEV-EDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQediincKKQEERMLK 534
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767979865 718 LMKHFKKEKSEAENHIRTLKAESLEEKNMAKIhrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHI 796
Cdd:pfam05483 535 QIENLEEKEMNLRDELESVREEFIQKGDEVKC---KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNI 610
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
343-977 |
4.21e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 343 EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQL--QML 420
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 421 DRLKEIQNHFDTCEAERKHADLQ-----ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLkLKAQESIRQWKL 495
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRArkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAH-VKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 496 KHKKLERALEKQSETVDELTGKNNQILKEKDELK-----TQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDI 570
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 571 KSHqadlelevknsldtihrleseLKKQSKIQsqmKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANK 650
Cdd:TIGR00618 426 LAH---------------------AKKQQELQ---QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 651 LAEEERAKKAVLKDLSDLTAQAKSRDEETA--TIITQLKLERDVHQR---ELKDLTSSLQSVKTKHEQNIQELMKHFKKE 725
Cdd:TIGR00618 482 HLQETRKKAVVLARLLELQEEPCPLCGSCIhpNPARQDIDNPGPLTRrmqRGEQTYAQLETSEEDVYHQLTSERKQRASL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 726 KSEAENHIRTLKAESLEEKNMAKIhrgqLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEhlRR 805
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQCDNRSKED----IPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLH--LQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 806 MEEARLQLKdqLLCLETEQESILgviGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERE 885
Cdd:TIGR00618 636 QCSQELALK--LTALHALQLTLT---QERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 886 NREKNLRHQlmlcRQQLRNLTENKESELQclfQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQPKLLFKLPPWEDA 965
Cdd:TIGR00618 711 THIEEYDRE----FNEIENASSSLGSDLA---AREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHL 783
|
650
....*....|..
gi 767979865 966 SQTAVRNQSEAQ 977
Cdd:TIGR00618 784 AAEIQFFNRLRE 795
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
600-988 |
4.78e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 4.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 600 KIQSQMKVEKAHLEEEIAE--LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 677
Cdd:pfam02463 146 IIAMMKPERRLEIEEEAAGsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 678 ETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKL 757
Cdd:pfam02463 226 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 838 ACKTFSKDSVEKLKvfssgpdihydphrwlaesktKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLF 917
Cdd:pfam02463 386 LSSAAKLKEEELEL---------------------KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG 444
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 918 QQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQPKLLFKLPPWEDASQTAVRNQSEAQFEEKADRVIAL 988
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLAL 515
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
443-629 |
5.10e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 43.64 E-value: 5.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 443 QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwKLKHKKLERALEKQSEtvdELTGKNNQIL 522
Cdd:PRK09510 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ-AEEAAKQAALKQKQAE---EAAAKAAAAA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 523 KEK-DELKTQLYAALQQIENLRKELNDVLTKrALQEEELHSKEEKLRDIKshqADLELEVKNSLDTIHRLESELKKQSKI 601
Cdd:PRK09510 146 KAKaEAEAKRAAAAAKKAAAEAKKKAEAEAA-KKAAAEAKKKAEAEAAAK---AAAEAKKKAEAEAKKKAAAEAKKKAAA 221
|
170 180
....*....|....*....|....*...
gi 767979865 602 QSQMKVEKAHLEEEIAELKKSQAQDKAK 629
Cdd:PRK09510 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
252-807 |
5.18e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 252 LQEALKKQEAKADEHEGA-IKNKLRQTETEKNQLeqelelsrrllnqSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQV 330
Cdd:TIGR01612 701 LKSKIDKEYDKIQNMETAtVELHLSNIENKKNEL-------------LDIIVEIKKHIHGEINKDLNKILEDFKNKEKEL 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 331 SQISKQQSNYQDEQGEdwrfrrgverekqdLEKQMSDLRVQLN--FSAMASELEEVKRCMErKDKEKAHLASQVENLTRE 408
Cdd:TIGR01612 768 SNKINDYAKEKDELNK--------------YKSKISEIKNHYNdqINIDNIKDEDAKQNYD-KSKEYIKTISIKEDEIFK 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 409 LENGEK-QQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR--HAEDATKQAERYLSELQQSEALKEEAEKRRED---- 481
Cdd:TIGR01612 833 IINEMKfMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNkiKAEISDDKLNDYEKKFNDSKSLINEINKSIEEeyqn 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 482 ----------LKL--KAQESIRQWKLKHKKLERALEKQSETVDE---------------LTGKNNQILKEKDELKTQLYA 534
Cdd:TIGR01612 913 intlkkvdeyIKIceNTKESIEKFHNKQNILKEILNKNIDTIKEsnlieksykdkfdntLIDKINELDKAFKDASLNDYE 992
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 535 A-----LQQIENLRKEL-----NDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSL-DTIHRLESELKKQSKIQS 603
Cdd:TIGR01612 993 AknnelIKYFNDLKANLgknkeNMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIyNIIDEIEKEIGKNIELLN 1072
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 604 QMKVEKAhleeEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE-ERAKKAVLKDLSDLTAQAKSRDEETATI 682
Cdd:TIGR01612 1073 KEILEEA----EINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDiKNLDQKIDHHIKALEEIKKKSENYIDEI 1148
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 683 ITQL-KLE----RDVHQRELKDLTSSLQSVKTK--HEQNIQELMKHFKKEKSEAENhirtlKAESLEEKNMAKIHRGQ-L 754
Cdd:TIGR01612 1149 KAQInDLEdvadKAISNDDPEEIEKKIENIVTKidKKKNIYDEIKKLLNEIAEIEK-----DKTSLEEVKGINLSYGKnL 1223
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 767979865 755 EKLKsqCDRLTEELTQNENENKKLKLKYQCL---KDQLEEREKHISIEEEHLRRME 807
Cdd:TIGR01612 1224 GKLF--LEKIDEEKKKSEHMIKAMEAYIEDLdeiKEKSPEIENEMGIEMDIKAEME 1277
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
371-529 |
5.44e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 371 QLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEiqnhfdtcEAERKHADLqiseltrh 450
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE--------EAEKEAQQA-------- 578
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767979865 451 AEDATKQAERYLSELQQSEALKEEAEKRREdlklkAQESIRQWKLKHKKLERALEKQSETVDEltgknnqiLKEKDELK 529
Cdd:PRK00409 579 IKEAKKEADEIIKELRQLQKGGYASVKAHE-----LIEARKRLNKANEKKEKKKKKQKEKQEE--------LKVGDEVK 644
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
495-802 |
7.67e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 495 LKHKKLERALEKQSETVDELTGKNNQIlkekDELKTQLYAALQQIENLRKELNDvltkralqeeelhsKEEKLRDIKSHQ 574
Cdd:PRK01156 159 LEINSLERNYDKLKDVIDMLRAEISNI----DYLEEKLKSSNLELENIKKQIAD--------------DEKSHSITLKEI 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 575 ADLELEVKNSLDTIHRLESELKKQSKIQSqmkvEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE 654
Cdd:PRK01156 221 ERLSIEYNNAMDDYNNLKSALNELSSLED----MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNY 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 655 ERAKKAVLKDLSDLTAQAKSRDEETATIITQLK----LERD-----VHQRELKDLTSSLQSVKTkHEQNIQELMKHFKKE 725
Cdd:PRK01156 297 INDYFKYKNDIENKKQILSNIDAEINKYHAIIKklsvLQKDyndyiKKKSRYDDLNNQILELEG-YEMDYNSYLKSIESL 375
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979865 726 KSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEH 802
Cdd:PRK01156 376 KKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQ 452
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
465-616 |
9.06e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.16 E-value: 9.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 465 LQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkEKDELKTQLYAALQQIENLRK 544
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR---------EREELQREEERLVQKEEQLDA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 545 ELNDVltkrALQEEELHSKEEKL------RDIKSHQADLELEVKNSLDT-------IHRLESELKKQSKIQSQMKVEKAH 611
Cdd:PRK12705 96 RAEKL----DNLENQLEEREKALsareleLEELEKQLDNELYRVAGLTPeqarkllLKLLDAELEEEKAQRVKKIEEEAD 171
|
....*
gi 767979865 612 LEEEI 616
Cdd:PRK12705 172 LEAER 176
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
549-744 |
9.25e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 9.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 549 VLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 629 KLLE----MQESIKDLSAI--------------RADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLER 690
Cdd:COG3883 87 ELGEraraLYRSGGSVSYLdvllgsesfsdfldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767979865 691 DVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEK 744
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
608-792 |
9.91e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQL- 686
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALy 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 687 -------KLERDVHQRELKDLTSSLQSVKTKHEQNiQELMKHFKKEKSEAENH---IRTLKAESLEEKNMAKIHRGQLEK 756
Cdd:COG3883 97 rsggsvsYLDVLLGSESFSDFLDRLSALSKIADAD-ADLLEELKADKAELEAKkaeLEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 767979865 757 LKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 792
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
199-447 |
1.13e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 199 ALEELTEKLNEAQkqEVVSDRVERRLQELEREMRTERE------------------------------LVERRQDQLGLM 248
Cdd:PRK04863 356 DLEELEERLEEQN--EVVEEADEQQEENEARAEAAEEEvdelksqladyqqaldvqqtraiqyqqavqALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 249 SLQL------QEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGS------RETLLH--------- 307
Cdd:PRK04863 434 DLTAdnaedwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSeawdvaRELLRRlreqrhlae 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 308 QVEELRTQLTKAEGD---RKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQlnFSAMASELEEV 384
Cdd:PRK04863 514 QLQQLRMRLSELEQRlrqQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER--RMALRQQLEQL 591
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979865 385 KRCMER-KDKEKAHLASQvENLTR-------ELENGE---KQQLQMLDRLKEIQNHFDTCEAERKHADLQISEL 447
Cdd:PRK04863 592 QARIQRlAARAPAWLAAQ-DALARlreqsgeEFEDSQdvtEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
586-792 |
1.23e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 586 DTIHRLESELK----KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKK-- 659
Cdd:PHA02562 174 DKIRELNQQIQtldmKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEdp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 660 -AVLKDLSDLTAQAKSRDEE-----------------TATIITQLKLERDVHQReLKDLTSSLQSVKTKHEQnIQELMKH 721
Cdd:PHA02562 254 sAALNKLNTAAAKIKSKIEQfqkvikmyekggvcptcTQQISEGPDRITKIKDK-LKELQHSLEKLDTAIDE-LEEIMDE 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979865 722 F---KKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 792
Cdd:PHA02562 332 FneqSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
195-666 |
1.31e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 195 ETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKL 274
Cdd:pfam12128 461 ELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFL 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 275 RqteTEKNQLEQELE--LSRRLL---------NQSEGSRETLLHQV----------------EELRTQLTKAEGDRKGLQ 327
Cdd:pfam12128 541 R---KEAPDWEQSIGkvISPELLhrtdldpevWDGSVGGELNLYGVkldlkridvpewaaseEELRERLDKAEEALQSAR 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 328 HQVSQISKQQSNYQDEQGEdwrFRRGVEREKQDLEKqmSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:pfam12128 618 EKQAAAEEQLVQANGELEK---ASREETFARTALKN--ARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLK 692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 408 ELENGEKQQLQmldrlkEIQNHFDTCEAERKHADLQISELTRHAEDATKQA--ERYLSELQQSEALKEEaekRREDLKLK 485
Cdd:pfam12128 693 QLDKKHQAWLE------EQKEQKREARTEKQAYWQVVEGALDAQLALLKAAiaARRSGAKAELKALETW---YKRDLASL 763
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 486 AQESIRQWKLK------HKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNdvltkralqeee 559
Cdd:pfam12128 764 GVDPDVIAKLKreirtlERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLA------------ 831
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 560 lhskeEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSqmKVEKAHLEEEIAELKKSQAQDKAKLlemqesiKD 639
Cdd:pfam12128 832 -----RLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMS--KLATLKEDANSEQAQGSIGERLAQL-------ED 897
|
490 500
....*....|....*....|....*..
gi 767979865 640 LSAIRADLANKLAEEERAKKAVLKDLS 666
Cdd:pfam12128 898 LKLKRDYLSESVKKYVEHFKNVIADHS 924
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
219-818 |
1.32e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 219 RVERRLQELEREMRTERELVERRQDQ-LGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELElsRRLLNQ 297
Cdd:pfam10174 145 RIETQKQTLGARDESIKKLLEMLQSKgLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELH--RRNQLQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 298 SEGSRETLLHQVEELRTqltkaegdrkglqhqvSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSA- 376
Cdd:pfam10174 223 PDPAKTKALQTVIEMKD----------------TKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKf 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 377 MASELEEVKRCMERKDKEKAHLASQVENLTreleNGEKQQLQMLDRLKE-----------IQNHFDTCEAERKHADLQIS 445
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKLETLT----NQNSDCKQHIEVLKEsltakeqraaiLQTEVDALRLRLEEKESFLN 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 446 ELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLE------RALEKQSETVDELTGKNN 519
Cdd:pfam10174 363 KKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAglkervKSLQTDSSNTDTALTTLE 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 520 QILKEKDELKTQL--------YAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 591
Cdd:pfam10174 443 EALSEKERIIERLkeqreredRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 592 ESELKKQ----SKIQSQMKveKAHlEEEIAELKKSQAQDKAKLLEmqesiKDLSAIRADLANKLAEEERakkaVLKDLSD 667
Cdd:pfam10174 523 EIAVEQKkeecSKLENQLK--KAH-NAEEAVRTNPEINDRIRLLE-----QEVARYKEESGKAQAEVER----LLGILRE 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 668 LTAQAKSRDEETATIitqlkleRDVHQRELKDltsslQSVKTKHEQNIQELMKhfKKEKSEAENHIRtlkaeslEEKNMA 747
Cdd:pfam10174 591 VENEKNDKDKKIAEL-------ESLTLRQMKE-----QNKKVANIKHGQQEMK--KKGAQLLEEARR-------REDNLA 649
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 748 KIHRgqleklKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLL 818
Cdd:pfam10174 650 DNSQ------QLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEAL 714
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
456-956 |
1.32e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 456 KQAERYLSELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkekdELKTQLYAA 535
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREELEKL------------EKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 536 LQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLElEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEE 615
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 616 IAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKdLSDLTAQAKSRDEETATIITQLKLERDVhqr 695
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA-LLALLGLGGSLLSLILTIAGVLFLVLGL--- 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 696 eLKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHR------GQLEKLKSQCDRLTEELT 769
Cdd:COG4717 286 -LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLelldriEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 770 QNENENKKLKLKYQCLKDQLEEREKHISIEEEhLRRMEEARLQLKDQLLCLETEQESILGVIGKEidaacktfskdsvek 849
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEE--------------- 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 850 lkvfssgpdihydphrwlaESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKesELQCLFQQIERQEQLLDE 929
Cdd:COG4717 429 -------------------ELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG--ELAELLQELEELKAELRE 487
|
490 500 510
....*....|....*....|....*....|...
gi 767979865 930 IHREK------RDLLEETQRKDEEmgSLQPKLL 956
Cdd:COG4717 488 LAEEWaalklaLELLEEAREEYRE--ERLPPVL 518
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
194-554 |
1.48e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 194 AETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNK 273
Cdd:COG4717 135 EALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 274 LRQTETEKNQLEQELE-LSRRLLNQSEGSR-----------------ETLLHQVEELRTQLTKAEGDRKGLQHQVSQI-S 334
Cdd:COG4717 215 LEEAQEELEELEEELEqLENELEAAALEERlkearlllliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLlA 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 335 KQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEK 414
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSP--EELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 415 QQL---------QMLDRLKEIQNHFDTCEAERKHADLQISEL--TRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK 483
Cdd:COG4717 373 AALlaeagvedeEELRAALEQAEEYQELKEELEELEEQLEELlgELEELLEALDEEELEEELEELEEELEELEEELEELR 452
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 484 LKAQEsiRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRA 554
Cdd:COG4717 453 EELAE--LEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERA 521
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
209-638 |
1.60e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 209 EAQKQEVVSDRVERRLQELEREMRTEREL--VERRQDQLGLMSLQLQEALKKQEAKADEhegaIKNKLRQTETEKNQLEQ 286
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLAPDKLKSTESELkkKEKRRDEMLGLAPGRQSIIDLKEKEIPE----LRNKLQKVNRDIQRLKN 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 287 ELELSRRLLnqseGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwRFRRGVEREKQDLEKQms 366
Cdd:TIGR00606 766 DIEEQETLL----GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD--RTVQQVNQEKQEKQHE-- 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 367 dlrvqlnFSAMASELEEVKRCMERKDKEKAHLASQVENLTRE---LENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQ 443
Cdd:TIGR00606 838 -------LDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEklqIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 444 ISELTRHAEDATKQAERYLSElqqsealKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKqsetvdeltGKNNQILK 523
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISS-------KETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD---------GKDDYLKQ 974
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 524 EKDELKTqLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDikshqadlELEVKNSLDTIHRLESELKKQSKIQS 603
Cdd:TIGR00606 975 KETELNT-VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD--------NLTLRKRENELKEVEEELKQHLKEMG 1045
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 767979865 604 QMKV-----EKAHLEEEIAELKKSQAQDKAKLLEMQESIK 638
Cdd:TIGR00606 1046 QMQVlqmkqEHQKLEENIDLIKRNHVLALGRQKGYEKEIK 1085
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
471-743 |
1.97e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.34 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 471 LKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETvdeltgknnqilKEKDELKTQlyaalqqienlRKELNDVL 550
Cdd:PTZ00108 1108 NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEV------------EEKEIAKEQ-----------RLKSKTKG 1164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 551 TKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKL 630
Cdd:PTZ00108 1165 KASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLK 1244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 631 LEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK 710
Cdd:PTZ00108 1245 SKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKK 1324
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 767979865 711 HEQNI---------QELMKHFKKEKSEAENHIRTLKAESLEE 743
Cdd:PTZ00108 1325 KKSEKktarkkkskTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
494-660 |
2.23e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 494 KLKHKKLERALEKQSETVDELTGKNNQILKEKdelktqLYAALQQIENLRKELNDVLTKR----ALQEEELHSKEEKLRD 569
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA------LLEAKEEIHKLRNEFEKELRERrnelQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 570 IKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAqdKAKLLE-MQESIKDLSAIRADLA 648
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA--KEILLEkVEEEARHEAAVLIKEI 178
|
170
....*....|..
gi 767979865 649 NKLAEEERAKKA 660
Cdd:PRK12704 179 EEEAKEEADKKA 190
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
462-654 |
2.41e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 462 LSELQQSEALKEEAEKRREDLKLKAQESIRQWKlkhkKLERALEKQSETVDELTgknnqilKEKDELKTQLYAALQQIEN 541
Cdd:COG1579 9 LLDLQELDSELDRLEHRLKELPAELAELEDELA----ALEARLEAAKTELEDLE-------KEIKRLELEIEEVEARIKK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 542 LRKELNDVLTKRalqeeELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKqskIQSQMKVEKAHLEEEIAELKk 621
Cdd:COG1579 78 YEEQLGNVRNNK-----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELD- 148
|
170 180 190
....*....|....*....|....*....|...
gi 767979865 622 sqaqdkAKLLEMQESIKDLSAIRADLANKLAEE 654
Cdd:COG1579 149 ------EELAELEAELEELEAEREELAAKIPPE 175
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
557-669 |
2.78e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 557 EEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK-QSKIQSQMKVEKA--HLEEEIAELKKsqaqdkaKLLEM 633
Cdd:COG2433 412 EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEaRSEERREIRKDREisRLDREIERLER-------ELEEE 484
|
90 100 110
....*....|....*....|....*....|....*.
gi 767979865 634 QESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLT 669
Cdd:COG2433 485 RERIEELKRKLERLKELWKLEHSGELVPVKVVEKFT 520
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
484-770 |
3.10e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 484 LKAQESIRQWKLKHKKLERALEKQSETVDELTGknnqilkEKDELKTQLYAALQQIENLRKELND------VLTKRALQe 557
Cdd:PRK04863 344 LRQQEKIERYQADLEELEERLEEQNEVVEEADE-------QQEENEARAEAAEEEVDELKSQLADyqqaldVQQTRAIQ- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 558 eeLHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSK----IQSQMKVEKAHLE--EEIAEL--------KKSQ 623
Cdd:PRK04863 416 --YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEellsLEQKLSVAQAAHSqfEQAYQLvrkiagevSRSE 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 624 AQDKAK-LLEMQESIKDLSAIRADLANKLAEEER--AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 700
Cdd:PRK04863 494 AWDVAReLLRRLREQRHLAEQLQQLRMRLSELEQrlRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSES 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 701 TSSLQSVKTKHEQNIQELMKHFKKEKS---------EAENHIRTLKAESLEEKNM--------------AKIHRGQLEKL 757
Cdd:PRK04863 574 VSEARERRMALRQQLEQLQARIQRLAArapawlaaqDALARLREQSGEEFEDSQDvteymqqllerereLTVERDELAAR 653
|
330
....*....|...
gi 767979865 758 KSQCDRLTEELTQ 770
Cdd:PRK04863 654 KQALDEEIERLSQ 666
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
458-758 |
3.17e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 458 AERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:COG4372 1 GDRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 538 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 617
Cdd:COG4372 81 ELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 618 ELkksqaQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQREL 697
Cdd:COG4372 161 SL-----QEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLAL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 698 KDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:COG4372 236 SALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELK 296
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
590-1011 |
3.84e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 590 RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANklAEEERAKKAVLKDLSDLT 669
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEE--LREELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 670 AQAKSRDEETATIITQLKLERDvHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAEsleeknmaki 749
Cdd:COG4717 132 QELEALEAELAELPERLEELEE-RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE---------- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 750 hrgqLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEA-RLQLKDQLLCLETEQESIL 828
Cdd:COG4717 201 ----LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAaLLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 829 GVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTEN 908
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 909 KESELQCLFQQIE-RQEQLLDEIH-------REKRDLLEETQRKDEEMGSLQPKLLFKLPPWEDASQTAVRNQSEAQFEE 980
Cdd:COG4717 357 EELEEELQLEELEqEIAALLAEAGvedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE 436
|
410 420 430
....*....|....*....|....*....|.
gi 767979865 981 KADRVIALETSTQVALDHLESVPEKLSLLED 1011
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
434-546 |
4.05e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 434 EAERKHADLQ----ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE 509
Cdd:PRK12704 52 EAIKKEALLEakeeIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 767979865 510 TVDELTGKNNQILKE-----KDELKTQLyaalqqIENLRKEL 546
Cdd:PRK12704 132 ELEELIEEQLQELERisgltAEEAKEIL------LEKVEEEA 167
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
559-720 |
4.57e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQeSIK 638
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-NNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 639 DLSAIradlankLAEEERAKKAvLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQEL 718
Cdd:COG1579 90 EYEAL-------QKEIESLKRR-ISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
..
gi 767979865 719 MK 720
Cdd:COG1579 162 EA 163
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
456-657 |
5.24e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 456 KQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA 535
Cdd:PRK05771 40 LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKEL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 536 LQQIENLR--------------------------KELNDVLTKRALQEEELHSKEEKLRDI------KSHQADLE----- 578
Cdd:PRK05771 120 EQEIERLEpwgnfdldlslllgfkyvsvfvgtvpEDKLEELKLESDVENVEYISTDKGYVYvvvvvlKELSDEVEeelkk 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 579 --------LEVKNSLDTIHRLESELKKQSKiqsqmkvEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDlsaiRADLANK 650
Cdd:PRK05771 200 lgferlelEEEGTPSELIREIKEELEEIEK-------ERESLLEELKELAKKYLEELLALYEYLEIELE----RAEALSK 268
|
....*..
gi 767979865 651 LAEEERA 657
Cdd:PRK05771 269 FLKTDKT 275
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
608-825 |
5.40e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKsrdeETATIITQLK 687
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA----ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 688 LERDVHQRELKDLTSSLQSVKTKHEQNI-------------QELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQL 754
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALllspedfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 755 EKLKSQCDRLTEELTQNENENKKLKlkyqclkDQLEEREKHisiEEEHLRRMEEARLQLKDQLLCLETEQE 825
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLL-------ARLEKELAE---LAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
168-343 |
5.43e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 168 LRDLSSEQIRLGDDFNRELSRRSRSDAETK--RALEELTEKLNEAQKQEVVSDRVERRLQELERemrtERELVERRQDQL 245
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDalQERREALQRLAEYSWDEIDVASAEREIAELEA----ELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 246 GLMSLQLqEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSREtlLHQVEELRTQLTKAEGD--- 322
Cdd:COG4913 688 AALEEQL-EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR--LELRALLEERFAAALGDave 764
|
170 180
....*....|....*....|....
gi 767979865 323 ---RKGLQHQVSQISKQQSNYQDE 343
Cdd:COG4913 765 relRENLEERIDALRARLNRAEEE 788
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
512-667 |
5.57e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 512 DELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQAdlelEVKNSlDTIHRL 591
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG----NVRNN-KEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 592 ESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD----LSAIRADLANKLAEEERAKKAVLKDLSD 667
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEkkaeLDEELAELEAELEELEAEREELAAKIPP 174
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
450-660 |
5.96e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 40.45 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 450 HAEDATKQaeryLSELQQSEALKEEA----EKRREDL--KLKAQE-SIRQWKLKHKKLERALEKQSETVDELTGKNNQIL 522
Cdd:PRK11637 41 HASDNRDQ----LKSIQQDIAAKEKSvrqqQQQRASLlaQLKKQEeAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 523 KEKDE----LKTQLYAALQQIENLRKELndVLTKRALQEEEL---------HSKEEKLRDIKSHQADLELEVKNsldtih 589
Cdd:PRK11637 117 QQQAAqerlLAAQLDAAFRQGEHTGLQL--ILSGEESQRGERilayfgylnQARQETIAELKQTREELAAQKAE------ 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979865 590 rLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKA 660
Cdd:PRK11637 189 -LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREAKA 258
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
154-708 |
6.39e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 154 ETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSR----RSRSDAETKRALEELteKLNEAQKQEVVSDRVERRLQELER 229
Cdd:pfam12128 271 ETLIASRQEERQETSAELNQLLRTLDDQWKEKRDElngeLSAADAAVAKDRSEL--EALEDQHGAFLDADIETAAADQEQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 230 E--MRTERELVERRQDQLGLMSLQLQEALKKQEAKADEhegaiknklrQTETEKNQLEQELELSRrllnqsegsretllh 307
Cdd:pfam12128 349 LpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKE----------QNNRDIAGIKDKLAKIR--------------- 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 308 qvEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFS-----AMASELE 382
Cdd:pfam12128 404 --EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFderieRAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 383 EVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDT-----CEAERKHADLQISELTRHAedATKQ 457
Cdd:pfam12128 482 AANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPqagtlLHFLRKEAPDWEQSIGKVI--SPEL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 458 AERY-LSELQQSEALKEEAEKRREDLKLKAQE------SIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:pfam12128 560 LHRTdLDPEVWDGSVGGELNLYGVKLDLKRIDvpewaaSEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASR 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 531 QLYAALQQIENLR---KELNDVLTKRALQ-----EEELHSKEEKLRDIKSHQADLELEVKNSLDTIHR--LESELKKQSK 600
Cdd:pfam12128 640 EETFARTALKNARldlRRLFDEKQSEKDKknkalAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEqkREARTEKQAY 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 601 IQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQ--------------ESIKDLSAIRADLANKLAEEERAKKAVLK--- 663
Cdd:pfam12128 720 WQVVEGALDAQLALLKAAIAARRSGAKAELKALEtwykrdlaslgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRyfd 799
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979865 664 ----------------------DLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVK 708
Cdd:pfam12128 800 wyqetwlqrrprlatqlsnierAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLR 866
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
194-427 |
7.16e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 7.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 194 AETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSlqLQEALKKQEAKADEHEGAIKNK 273
Cdd:COG3206 185 PELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEA--RLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 274 --LRQTETEKNQLEQEL-ELSRRLLNQSEgsretllhQVEELRTQLTKAegdRKGLQHQVSQISKQQSNYqdeqgedwrf 350
Cdd:COG3206 263 pvIQQLRAQLAELEAELaELSARYTPNHP--------DVIALRAQIAAL---RAQLQQEAQRILASLEAE---------- 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767979865 351 RRGVEREKQDLEKQMSDLRVQLN-FSAMASELEEvkrcmerkdkekahlasqvenLTRELENGEKQQLQMLDRLKEIQ 427
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAeLPELEAELRR---------------------LEREVEVARELYESLLQRLEEAR 378
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
267-749 |
7.56e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.42 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 267 EGAIKNKLRQTETEK-NQLEQEL-ELSrrlLNQSEGSRETLLHQVEELRTQLTKAEGDRkgLQHQVSQISKQQSNyqdeq 344
Cdd:TIGR01612 961 EKSYKDKFDNTLIDKiNELDKAFkDAS---LNDYEAKNNELIKYFNDLKANLGKNKENM--LYHQFDEKEKATND----- 1030
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 345 gedwrfrrgVEREKQDLEKQMSDLRVQLNFSA--MASELE-EVKRCMERKDKEkahLASQVE-NLTRELENGEKQQLQML 420
Cdd:TIGR01612 1031 ---------IEQKIEDANKNIPNIEIAIHTSIynIIDEIEkEIGKNIELLNKE---ILEEAEiNITNFNEIKEKLKHYNF 1098
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 421 DRLKEIQNHFDTCEAER-----KHADLQISELTRHAEDATKQAERYLSELQ-QSEALKEEAEKRREDlklkaqESIRQWK 494
Cdd:TIGR01612 1099 DDFGKEENIKYADEINKikddiKNLDQKIDHHIKALEEIKKKSENYIDEIKaQINDLEDVADKAISN------DDPEEIE 1172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 495 LKHKKLERALEKQSETVDELTGKNNQILK-EKDElktqlyAALQQIENLRKELNDVLTKRALQ--EEELHSKEEKLRDIK 571
Cdd:TIGR01612 1173 KKIENIVTKIDKKKNIYDEIKKLLNEIAEiEKDK------TSLEEVKGINLSYGKNLGKLFLEkiDEEKKKSEHMIKAME 1246
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 572 SHQADLElevknsldtihrlesELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRaDLANKL 651
Cdd:TIGR01612 1247 AYIEDLD---------------EIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIR-EKSLKI 1310
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 652 AE---EERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVhqRELKDLTSSLQSVKtKHEQNIQELMKHFKKEKSE 728
Cdd:TIGR01612 1311 IEdfsEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNI--LKLNKIKKIIDEVK-EYTKEIEENNKNIKDELDK 1387
|
490 500
....*....|....*....|.
gi 767979865 729 AENHIRTLKAESLEEKNMAKI 749
Cdd:TIGR01612 1388 SEKLIKKIKDDINLEECKSKI 1408
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
153-744 |
8.56e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRL------QE 226
Cdd:TIGR00606 557 RHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQD 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 227 LEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA--IKNKLRQTETEKNQLEQELELSRRLLNQSEGSRET 304
Cdd:TIGR00606 637 EESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCcpVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTES 716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 305 LLHQVEELRTQ-LTKAEGDRKGLQHQVSQISKQQSNYQdeqgedwRFRRGVEREKQDLEKQMSDLrvqlnfSAMASELEE 383
Cdd:TIGR00606 717 ELKKKEKRRDEmLGLAPGRQSIIDLKEKEIPELRNKLQ-------KVNRDIQRLKNDIEEQETLL------GTIMPEEES 783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 384 VKRCMERkdkekahlASQVENLTRELENGEKQQLQMLDRLKEIQnhfdtceaerkhADLQISELTRHAEDATKQAERYLS 463
Cdd:TIGR00606 784 AKVCLTD--------VTIMERFQMELKDVERKIAQQAAKLQGSD------------LDRTVQQVNQEKQEKQHELDTVVS 843
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 464 ELQQSEALKEEAEKRREDLKLKAQE------SIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:TIGR00606 844 KIELNRKLIQDQQEQIQHLKSKTNElkseklQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ 923
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 538 QIENLrkeLNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDT-IHRLESELKKQSKIQSQMKVEKAHLEEEI 616
Cdd:TIGR00606 924 EKEEL---ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDyLKQKETELNTVNAQLEECEKHQEKINEDM 1000
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 617 AELKKSQAQDKaklleMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTaqaksrdeetatiITQLKLERDVHQRE 696
Cdd:TIGR00606 1001 RLMRQDIDTQK-----IQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ-------------VLQMKQEHQKLEEN 1062
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 767979865 697 LKDLTsslqsvktKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEK 744
Cdd:TIGR00606 1063 IDLIK--------RNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEK 1102
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
185-814 |
8.90e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 8.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 185 ELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRV---ERRLQELEREMRTERELVERRQDQLGLMSLQLQEA------ 255
Cdd:PRK04863 480 QLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLqqlRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEdeleql 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 256 LKKQEAKADEHEgAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISK 335
Cdd:PRK04863 560 QEELEARLESLS-ESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLE 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 336 QQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRvqlnfSAMASELEEVKRCMER---------KDKEKAHLASQVENLT 406
Cdd:PRK04863 639 RERELTVE-------RDELAARKQALDEEIERLS-----QPGGSEDPRLNALAERfggvllseiYDDVSLEDAPYFSALY 706
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 407 RELE--------NGEKQQLQMLDRLKE----IQ--------NHFDTCEAER------KHADLQISELTRHAEDATKQAER 460
Cdd:PRK04863 707 GPARhaivvpdlSDAAEQLAGLEDCPEdlylIEgdpdsfddSVFSVEELEKavvvkiADRQWRYSRFPEVPLFGRAAREK 786
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 461 YLSELQ-QSEALKEEAEKRREDLKL--KAQESIRQWKLKHKKL------ERALEKQSETVDELTGKNNQILKEKDELKTQ 531
Cdd:PRK04863 787 RIEQLRaEREELAERYATLSFDVQKlqRLHQAFSRFIGSHLAVafeadpEAELRQLNRRRVELERALADHESQEQQQRSQ 866
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 532 LYAALQQIENLRKEL-------NDVLTKRALQ-EEELHSKEEKLRDIKSHQAdlelevknsldTIHRLESELkkqSKIQS 603
Cdd:PRK04863 867 LEQAKEGLSALNRLLprlnllaDETLADRVEEiREQLDEAEEAKRFVQQHGN-----------ALAQLEPIV---SVLQS 932
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 604 QmkvekahlEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANkLAEEERAKkaVLKDLSDLTAQAKSRDEETATII 683
Cdd:PRK04863 933 D--------PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAH-FSYEDAAE--MLAKNSDLNEKLRQRLEQAEQER 1001
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 684 TQLKLERDVHQRELKDLTSSLQSVKTKHeQNIQELMKHFKKEKSEAenhirTLKAESLEEknmakihrgqlEKLKSQCDR 763
Cdd:PRK04863 1002 TRAREQLRQAQAQLAQYNQVLASLKSSY-DAKRQMLQELKQELQDL-----GVPADSGAE-----------ERARARRDE 1064
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 767979865 764 LTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLK 814
Cdd:PRK04863 1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
201-297 |
8.95e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 40.03 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 201 EELTEKLNEAQ-KQEVVSDRVERRLQEL----------EREMRTErelVERRQDQLGLMSLQLQEALKKQE------AKA 263
Cdd:pfam10168 592 EKLAEKYEEIKdKQEKLMRRCKKVLQRLnsqlpvlsdaEREMKKE---LETINEQLKHLANAIKQAKKKMNyqryqiAKS 668
|
90 100 110
....*....|....*....|....*....|....*.
gi 767979865 264 DEHEG--AIKNKLRQTETEKNQLEQELELSRRLLNQ 297
Cdd:pfam10168 669 QSIRKksSLSLSEKQRKTIKEILKQLGSEIDELIKQ 704
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
278-464 |
9.01e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.56 E-value: 9.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 278 ETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSnyqdeqgedwrfrrgvere 357
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGA------------------- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 358 kqDLEKQMSDLrvqlnfsamASELEEVKRCMERKDKEKAHLASQVENLTRElengekqqlqmldrLKEIQNHFDTCEAER 437
Cdd:PRK09039 113 --AAEGRAGEL---------AQELDSEKQVSARALAQVELLNQQIAALRRQ--------------LAALEAALDASEKRD 167
|
170 180 190
....*....|....*....|....*....|.
gi 767979865 438 KHADLQISELTRHAEDA----TKQAERYLSE 464
Cdd:PRK09039 168 RESQAKIADLGRRLNVAlaqrVQELNRYRSE 198
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
261-489 |
9.18e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 261 AKADEHEGAIKNKLRQTETEKNQLEQELElsrRLLNQSEGSREtllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELD---ALQAELEELNE----EYNELQAELEALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 341 QDEQGEDWR--FRRGVEREK----------QDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRE 408
Cdd:COG3883 85 REELGERARalYRSGGSVSYldvllgsesfSDFLDRLSALSKIA--DADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 409 LENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQE 488
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
.
gi 767979865 489 S 489
Cdd:COG3883 243 A 243
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
200-380 |
9.34e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 200 LEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLG-------------------LMSLQLQEALKKQE 260
Cdd:COG3883 46 LEELNEEYNELQAE---LEALQAEIDKLQAEIAEAEAEIEERREELGeraralyrsggsvsyldvlLGSESFSDFLDRLS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 261 AKADEHEgAIKNKLRQTETEKNQLEQElelsrrllnqsegsRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:COG3883 123 ALSKIAD-ADADLLEELKADKAELEAK--------------KAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 767979865 341 QDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE 380
Cdd:COG3883 188 SAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
188-326 |
9.38e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 9.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979865 188 RRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLG-------LMSLQLQ-EALKKQ 259
Cdd:COG1579 25 RLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvrnnkeYEALQKEiESLKRR 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979865 260 EAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETllhQVEELRTQLTKAEGDRKGL 326
Cdd:COG1579 105 ISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAELEELEAEREEL 168
|
|
| |
