|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-827 |
8.67e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 8.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 160 QLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDA---ETKRALEELTEKLNEAQKqevVSDRVERRLQELEREMRTERE 236
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEkleELRLEVSELEEEIEELQK---ELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 237 LVERRQDQLGLMSLQLQEALKKQEAKADEhegaiknkLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQL 316
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEE--------LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 317 TKAEGDRKGLQHQVSQISKQQSnYQDEQGEDWRFRRgvEREKQDLEKQMSDLrVQLNFSAMASELEEVKRCMERKDKEKA 396
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIE-RLEARLERLEDRR--ERLQQEIEELLKKL-EEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 397 HLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEA-ERKHADLQ-------------------ISELTRHAEDATK 456
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlQENLEGFSegvkallknqsglsgilgvLSELISVDEGYEA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 457 QAERYLSELQQS-------------EALKEEAEKRREDLKLKAqesirqwkLKHKKLERALEKQSETVDELTGKNNQILK 523
Cdd:TIGR02168 538 AIEAALGGRLQAvvvenlnaakkaiAFLKQNELGRVTFLPLDS--------IKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 524 EKDELK-------------TQLYAALQQIENLRKELN------DVLTKRAL--------------QEEELHSKEEKLRDI 570
Cdd:TIGR02168 610 FDPKLRkalsyllggvlvvDDLDNALELAKKLRPGYRivtldgDLVRPGGVitggsaktnssileRRREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 571 KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANK 650
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 651 LAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQrELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAE 730
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT-LLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 731 NhirtlKAESLEEKNmakihrGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEAR 810
Cdd:TIGR02168 849 E-----LSEDIESLA------AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730
....*....|....*..
gi 767979869 811 LQLKDQLLCLETEQESI 827
Cdd:TIGR02168 918 EELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-769 |
2.58e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 2.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 166 QSLRDLSSEQIRLGDDFNRELSRR-------SRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELV 238
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 239 ERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKL----RQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRT 314
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEellkKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 315 QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGV---EREKQDLEKQMSDLRVQLNFSA-MASELEEVKR---- 386
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVkalLKNQSGLSGILGVLSELISVDEgYEAAIEAALGgrlq 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 387 --CMERKDKEKAHLASQVENltreleNGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQ--ISELTRHAEDATKQAERYL 462
Cdd:TIGR02168 549 avVVENLNAAKKAIAFLKQN------ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLgvAKDLVKFDPKLRKALSYLL 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 463 SELQQSEALKEEAEKRRedlKLKAQESI------------------RQWKLKHKKLERALEKQSETVDELTGKNNQILKE 524
Cdd:TIGR02168 623 GGVLVVDDLDNALELAK---KLRPGYRIvtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKA 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 525 KDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQ 604
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 605 MKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATI-- 682
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaa 859
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 683 -ITQLKLERDVHQRELKdltsSLQSVKTKHEQNIQELMKHFKKEKS---EAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:TIGR02168 860 eIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEelrELESKRSELRRELEELREKLAQLELRLEGLE 935
|
650
....*....|.
gi 767979869 759 SQCDRLTEELT 769
Cdd:TIGR02168 936 VRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
218-837 |
3.12e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 3.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 218 DRVERRLQELEREMRT---ERELVERRQDqlglmsLQLQEALKKQEAKADEHEgAIKNKLRQTETEKNQLEQELELSRRL 294
Cdd:COG1196 189 ERLEDILGELERQLEPlerQAEKAERYRE------LKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 295 LNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRVQLNf 374
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER-------RRELEERLEELEEELAELEEELE- 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 375 sAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDA 454
Cdd:COG1196 334 -ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 455 TKQAERYLSELQQSEALKEEAEKRREDLKLKAQEsirqwklkhkkLERALEKQSETVDELTGKNNQILKEKDELKTQLYA 534
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEE-----------AAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 535 ALQQIENLRKELNdvLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKV-EKAHLE 613
Cdd:COG1196 482 LLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 614 EEIAELKKSQAQDKAKLLEMqesikDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVH 693
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPL-----DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 694 QRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNEN 773
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 774 ENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
174-810 |
4.21e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 83.65 E-value: 4.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 174 EQIRLGDDFNRELSRR---SRSDAETKRALE----ELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlg 246
Cdd:PTZ00121 1144 EARKAEDAKRVEIARKaedARKAEEARKAEDakkaEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE-- 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 247 lMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRR---LLNQSEGSRETLLHQVEELRT--QLTKAEG 321
Cdd:PTZ00121 1222 -DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARrqaAIKAEEARKADELKKAEEKKKadEAKKAEE 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 322 DRKGLQHQVSQISKQQSNYQDEQGEDWRfRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQ 401
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 402 VENLTRELENGEK--QQLQMLDRLKEIQNHFDTCEAERKHAD--LQISELTRHAEDATKQAErylsELQQSEALKEEAEK 477
Cdd:PTZ00121 1380 ADAAKKKAEEKKKadEAKKKAEEDKKKADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEE 1455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 478 RR--EDLKLKAQESIRQWKLKHKKLERalekqsETVDELTGKNNQILKEKDELKTQLYAAlQQIENLRKELNDVLTKRAL 555
Cdd:PTZ00121 1456 AKkaEEAKKKAEEAKKADEAKKKAEEA------KKADEAKKKAEEAKKKADEAKKAAEAK-KKADEAKKAEEAKKADEAK 1528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 556 QEEELHSKEEKLRDIKSHQADlelEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQE 635
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 636 SIKDLSAIRADLANKLAEEERAKKAVLKDLSdltaQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNI 715
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVE----QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 716 QELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRG-QLEKLKSQCDRLTEELTQNENENKKlklKYQCLKDQLEEREK 794
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAeELKKAEEENKIKAEEAKKEAEEDKK---KAEEAKKDEEEKKK 1758
|
650
....*....|....*.
gi 767979869 795 HISIEEEHLRRMEEAR 810
Cdd:PTZ00121 1759 IAHLKKEEEKKAEEIR 1774
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-810 |
2.04e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 81.34 E-value: 2.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 190 SRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlglMSLQLQEALKKQEAKADEHEGA 269
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE---DARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 270 IKNKLRQTETEKNQLEQELELSRRLLnqsEGSRETLLHQVEELRtqltKAEGDRKglqhqVSQISKQQSNYQDEQGEDWR 349
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAE---EVRKAEELRKAEDAR----KAEAARK-----AEEERKAEEARKAEDAKKAE 1227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 350 FRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNH 429
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 430 FDTCEAERKHADL--QISELTRHAEDATKQAERylsELQQSEALKEEAEKRREDLKlKAQESIRQWKLK---HKKLERAL 504
Cdd:PTZ00121 1308 KKKAEEAKKADEAkkKAEEAKKKADAAKKKAEE---AKKAAEAAKAEAEAAADEAE-AAEEKAEAAEKKkeeAKKKADAA 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 505 EKQSETV---DELTGKNNQILKEKDELKTQlYAALQQIENLRKELNDV-----LTKRALQE---EELHSKEEKLRdiKSH 573
Cdd:PTZ00121 1384 KKKAEEKkkaDEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKkkadeAKKKAEEAkkaDEAKKKAEEAK--KAE 1460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 574 QADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEE---------EIAELKKSQAQDKAKLLEMQESIKDLSAIR 644
Cdd:PTZ00121 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkaaeakkKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 645 ADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEE-------TATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQE 717
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdknmalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 718 LMKHFKKEKsEAENHIRTLKAESLEEKNMAKihrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHIS 797
Cdd:PTZ00121 1621 KAEELKKAE-EEKKKVEQLKKKEAEEKKKAE----ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
650
....*....|...
gi 767979869 798 IEEEHLRRMEEAR 810
Cdd:PTZ00121 1696 KEAEEAKKAEELK 1708
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-706 |
2.65e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 2.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 160 QLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAE---TKRALEELTEKLNEAQKQEVvsdRVERRLQELEREMRTERE 236
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAEleeLRLELEELELELEEAQAEEY---ELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 237 LVERRQDQLGLMSLQLQEaLKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQL 316
Cdd:COG1196 310 RRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 317 TKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKA 396
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE---------EALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 397 HLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTC-EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEA 475
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLlEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 476 EKRREDLKLK---------AQESIRQwkLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLR-KE 545
Cdd:COG1196 540 LEAALAAALQnivveddevAAAAIEY--LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARyYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 546 LNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQ 625
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 626 DKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQ 705
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
.
gi 767979869 706 S 706
Cdd:COG1196 778 A 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-764 |
5.82e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 5.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 198 RALEELTEKLNEAQKQEvvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQT 277
Cdd:COG1196 232 LKLRELEAELEELEAEL---EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 278 ETEKNQLEQELELSRRLLNQsEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVERE 357
Cdd:COG1196 309 ERRRELEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 358 KQDLEKQMSDLRVQLNFSAMASELEEVKRcmERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAER 437
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERL--ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 438 KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDE--LT 515
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEaaLA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 516 GKNNQILKEKDElktqlyAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVknslDTIHRLESEL 595
Cdd:COG1196 546 AALQNIVVEDDE------VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA----SDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 596 KKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR 675
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 676 DEETATIITQLKLERDVHQRELKDLTSSLQsvktKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIhRGQLE 755
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEA----LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-ERELE 770
|
....*....
gi 767979869 756 KLKSQCDRL 764
Cdd:COG1196 771 RLEREIEAL 779
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
276-814 |
1.72e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.15 E-value: 1.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 276 QTETEKNQLEQELELsrrLLNQSEGSRETLLHQVEELRTQLTK----AEGDRKGLQHQVSQISKQQSN--------YQDE 343
Cdd:pfam15921 246 QLEALKSESQNKIEL---LLQQHQDRIEQLISEHEVEITGLTEkassARSQANSIQSQLEIIQEQARNqnsmymrqLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 344 QGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL 423
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLAN--SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 424 KEIQNHfDTCEAerkhadLQISELTRHAEDATKQAERYLSELQqseALKEEAEKRREDLKLKAQ---ESIRQWKLKHKKL 500
Cdd:pfam15921 401 KRLWDR-DTGNS------ITIDHLRRELDDRNMEVQRLEALLK---AMKSECQGQMERQMAAIQgknESLEKVSSLTAQL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 501 ERALEKQSETVDELTGKNnQILKEKDELKTQLYAALQQIENLRKELNDVLTKR------ALQE-EELHSKEEKLRDIKSH 573
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKK-MTLESSERTVSDLTASLQEKERAIEATNAEITKLrsrvdlKLQElQHLKNEGDHLRNVQTE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 574 QADLELEVKNSLDTIHRLESELKKQSKIQSQ-------MKVEKAHLEEEI-------AELKKSQAQDKAKLLEMQESIKD 639
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEIndrrlelQEFKILKDKKDAKIRELEARVSD 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 640 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEEtatiITQLKLERDVHQRELKDLTSSLQSVKTKheqniqeLM 719
Cdd:pfam15921 630 LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNK-------LK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 720 KHFKKEKSEAENHIRTLKAESLEEKNMAKI----------HRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQL 789
Cdd:pfam15921 699 MQLKSAQSELEQTRNTLKSMEGSDGHAMKVamgmqkqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
570 580
....*....|....*....|....*..
gi 767979869 790 E--EREKHISIEEEHLRRMEEARLQLK 814
Cdd:pfam15921 779 StvATEKNKMAGELEVLRSQERRLKEK 805
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
413-744 |
5.39e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.18 E-value: 5.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 413 EKQQLQML-DRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQ----SEALKEEAEKRREDLKLKAQ 487
Cdd:TIGR02169 672 EPAELQRLrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 488 EsIRQWKLKHKKLERALEKQSETVDELTGKNN------------QILKEKDELKTQLYAALQQIENLRKELNDVLTKRAL 555
Cdd:TIGR02169 752 E-IENVKSELKELEARIEELEEDLHKLEEALNdlearlshsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 556 QEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQE 635
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 636 SIKDLSAIRADLANKLAeeerAKKAVLKDLSDLTAQAKSRDEETAtIITQLKLERDVHQRELkdltSSLQSVKTKHEQNI 715
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLE----ALEEELSEIEDPKGEDEEIPEEEL-SLEDVQAELQRVEEEI----RALEPVNMLAIQEY 981
|
330 340 350
....*....|....*....|....*....|....
gi 767979869 716 QELMKHF-----KKEKSEAENHIRTLKAESLEEK 744
Cdd:TIGR02169 982 EEVLKRLdelkeKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
187-598 |
6.47e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 6.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 187 SRRSRSDAETKRALEELTEKLNEaqkqevvsdrverrLQELEREMRTERELVERRQDQLglmsLQLQEALKKQEAKADEH 266
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEE--------------LEEKIAELEKALAELRKELEEL----EEELEQLRKELEELSRQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 267 EGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGE 346
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 347 dwrfrrgVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEI 426
Cdd:TIGR02168 808 -------LRAELTLLNEEAANLRERLE--SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 427 QNhfdtceaERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKaQESIRQwKLKHKKlERALEK 506
Cdd:TIGR02168 879 LN-------ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR-LEGLEV-RIDNLQ-ERLSEE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 507 QSETVDELTGKNNQILKEKDELKTQLyaalQQIENLRKELNDVltkRALQEEELHSKEEKLRDIKSHQADLELEVKNSLD 586
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRL----KRLENKIKELGPV---NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
410
....*....|..
gi 767979869 587 TIHRLESELKKQ 598
Cdd:TIGR02168 1022 AIEEIDREARER 1033
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
444-794 |
1.73e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 444 ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKklERALEKQSetvdeLTGKNNQILK 523
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE--LRELELAL-----LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 524 EKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKShqadlelEVKNSLDTIHRLESELKKQSKIQS 603
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK-------ELYALANEISRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 604 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATII 683
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 684 TQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDR 763
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
330 340 350
....*....|....*....|....*....|.
gi 767979869 764 LTEELTQNENENKKLKLKYQCLKDQLEEREK 794
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-655 |
3.85e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 3.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 166 QSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQL 245
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 246 glmsLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKG 325
Cdd:COG1196 389 ----LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 326 LQHQVSQISKQQSNYQDEQGEdwrfrRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:COG1196 465 LAELLEEAALLEAALAELLEE-----LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 406 TRELENGEKQQLQMLD--RLKEIQNHFDTCEAERKH--ADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRRED 481
Cdd:COG1196 540 LEAALAAALQNIVVEDdeVAAAAIEYLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 482 LKLKAQESIRQWKLKHKKLERAL-EKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEEL 560
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 561 HSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDL 640
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
490
....*....|....*
gi 767979869 641 SAIradlaNKLAEEE 655
Cdd:COG1196 780 GPV-----NLLAIEE 789
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
434-739 |
1.24e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 434 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLK---AQESIRQWKLKHKKLERALEKQSET 510
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisaLRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 511 VDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIH- 589
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAa 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 590 ------RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLK 663
Cdd:TIGR02168 836 terrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767979869 664 DLsdltaqaksrdEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAE 739
Cdd:TIGR02168 916 EL-----------EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
222-826 |
1.60e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 1.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 222 RRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGS 301
Cdd:PTZ00121 1027 EKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 302 RETLLHQVEELRTQLTKAEGDRKGLQ-HQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE 380
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEaRKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 381 L---EEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTC---EAERKHADLQISELTRHAEDA 454
Cdd:PTZ00121 1187 VrkaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAkkaEEERNNEEIRKFEEARMAHFA 1266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 455 TKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLE-RALEKQSETVDELTGKNNQILKEKDELKTQLY 533
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 534 AALQQIENLRKELNDvlTKRALQEEELHSKEEKLrdiKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLE 613
Cdd:PTZ00121 1347 AAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKK---KADAAKKKAEEKKKADEAKKKAEEDKKKAD-----ELKKAAAA 1416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 614 EEIAELKKSQAQDKAKLLEMQESIKDlsAIRADLANKLAEEERAKKAVLKdlsdlTAQAKSRDEETAtiitqlklERDVH 693
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKKAEEAKK-----KAEEAKKADEAK--------KKAEE 1481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 694 QRELKDLTSSLQSVKTKHEQniqelMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNEN 773
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADE-----AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 767979869 774 ENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQES 826
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-679 |
5.56e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 5.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 310 EELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRVQLnfsamaseleevkrcmE 389
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEE-------LEQLRKELEELSRQISALRKDL----------------A 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 390 RKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQI------------------SELTRHA 451
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeelkalrealdelrAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 452 EDATKQAERylseLQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ 531
Cdd:TIGR02168 817 EEAANLRER----LESLERRIAATERRLEDL----EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 532 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLES-ELKKQSKIQSQMKVEKA 610
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEE 968
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767979869 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEET 679
Cdd:TIGR02168 969 EARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
314-808 |
5.76e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.58 E-value: 5.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 314 TQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwrfrrgVEREKQDLEKQMSDLRVQLNfsamasELEEVKRCMERKDK 393
Cdd:TIGR04523 145 TEIKKKEKELEKLNNKYNDLKKQKEELENELNL-------LEKEKLNIQKNIDKIKNKLL------KLELLLSNLKKKIQ 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 394 EKAHLASQVENLtrelengEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKE 473
Cdd:TIGR04523 212 KNKSLESQISEL-------KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 474 EAEKRREDLKLKAQESIRQWKLK-HKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyaalQQIENLRKELNDVLTK 552
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLN-------EQISQLKKELTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 553 RALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLE 632
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 633 MQESIKDLSairadlanklaEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVkTKHE 712
Cdd:TIGR04523 438 NNSEIKDLT-----------NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL-NEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 713 QNIQELMKHFKKEKSEAENHIRTLKAE---------SLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLK-- 781
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEkkekeskisDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKqe 585
|
490 500 510
....*....|....*....|....*....|....*....
gi 767979869 782 ------------YQCLKDQLEEREKHISIEEEHLRRMEE 808
Cdd:TIGR04523 586 ekqelidqkekeKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
185-732 |
8.86e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.86 E-value: 8.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 185 ELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERrqdqlglmslqlQEALKKQEAKAD 264
Cdd:PRK03918 184 FIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE------------IEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 265 EHEGAIKNKLRQTETEKNQLE---QELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQ 341
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKkeiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 342 DeqgedwrfRRGVEREKQDLEKQMSDLRVQLN-FSAMASELEEVKRCMERKDKEKAHLAS-QVENLTRELENGEKQQLQM 419
Cdd:PRK03918 332 E--------LEEKEERLEELKKKLKELEKRLEeLEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 420 LDRLKEIQNHFDTCEAERKHADLQISELTR------------HAEDATKQAERYLSELQQSEALKEEAEKRREDLK--LK 485
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRkeLR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEE 565
Cdd:PRK03918 484 ELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 566 KLRDIKSHQADLELEVKN----SLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLS 641
Cdd:PRK03918 564 KLDELEEELAELLKELEElgfeSVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 642 AIRADLANKLA----EEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKT--KHEQNI 715
Cdd:PRK03918 644 ELRKELEELEKkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKleKALERV 723
|
570
....*....|....*..
gi 767979869 716 QELMKHFKKEKSEAENH 732
Cdd:PRK03918 724 EELREKVKKYKALLKER 740
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
262-833 |
1.58e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 262 KADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQ 341
Cdd:TIGR04523 30 KQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 342 DEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSamaseLEEVKrcmeRKDKEKAHLASQVENLTRELENGEKQQLQMLD 421
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKF-----LTEIK----KKEKELEKLNNKYNDLKKQKEELENELNLLEK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 422 RLKEIQNHFDTCEAER-----------------KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 484
Cdd:TIGR04523 181 EKLNIQKNIDKIKNKLlklelllsnlkkkiqknKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 485 KAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQIL----------------------KEKDELKTQLYAALQ----- 537
Cdd:TIGR04523 261 EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqkeqdwnkelkselknqeKKLEEIQNQISQNNKiisql 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 538 --QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEE 615
Cdd:TIGR04523 341 neQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 616 IAELKKSQAQDKAKLLEMQESIKDLSairadlanklaEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQR 695
Cdd:TIGR04523 421 KELLEKEIERLKETIIKNNSEIKDLT-----------NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 696 ELKDLTSSLQSVkTKHEQNIQELMKHFKKEKSEAENHIRTLKAE---------SLEEKNMAKIHRGQLEKLKSQCDRLTE 766
Cdd:TIGR04523 490 ELKSKEKELKKL-NEEKKELEEKVKDLTKKISSLKEKIEKLESEkkekeskisDLEDELNKDDFELKKENLEKEIDEKNK 568
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979869 767 ELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGK 833
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
254-644 |
2.14e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 2.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 254 EALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLlnqSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQI 333
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK---REYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 334 skqqsnyqdeqgedwrfrrgvEREKQDLEKQMSDLRVQLNfsamaselEEVKRCMERKDKEKAHLASQVENLTRELENGE 413
Cdd:TIGR02169 257 ---------------------TEEISELEKRLEEIEQLLE--------ELNKKIKDLGEEEQLRVKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 414 KQQLQMLDRLKEIqnhfdtcEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQE---SI 490
Cdd:TIGR02169 308 RSIAEKERELEDA-------EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 491 RQWKLKHKKLERALEKqsetvdeLTGKNNQILKEKDELKTQLYAALQQIENLRkelndvltkralqeEELHSKEEKLRDI 570
Cdd:TIGR02169 381 AETRDELKDYREKLEK-------LKREINELKRELDRLQEELQRLSEELADLN--------------AAIAGIEAKINEL 439
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 571 KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIR 644
Cdd:TIGR02169 440 EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
223-929 |
3.42e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 223 RLQELEREMRTERELVERRQDQLGLMSLQLqEALKKQEAKADEHEgAIKNKLRQTE-----TEKNQLEQELELSRRLLNQ 297
Cdd:TIGR02168 173 RRKETERKLERTRENLDRLEDILNELERQL-KSLERQAEKAERYK-ELKAELRELElallvLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 298 SEgsretllHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDL-----RVQL 372
Cdd:TIGR02168 251 AE-------EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLerqleELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 373 NFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAE 452
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 453 DATKQAERYLSELQQSEALKEEAEKRREDLKLKAQES--------IRQWKLKHKKLERALEKQSETVDELTGKNNQILKE 524
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAeleeleeeLEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 525 KDELKTQLYAALQQIENLRKELNDVLTKRALQEE---------ELHSKEEKL-----------------RDIKSHQADLE 578
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlsELISVDEGYeaaieaalggrlqavvvENLNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 579 LEVKNSLDTIHRLESELKKQSKIQSQMKVEKAH----------LEEEIAELKKS---------------QAQDKAK---- 629
Cdd:TIGR02168 564 FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNiegflgvakdLVKFDPKLRKAlsyllggvlvvddldNALELAKklrp 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 630 ----------------------------LLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETAT 681
Cdd:TIGR02168 644 gyrivtldgdlvrpggvitggsaktnssILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 682 IITQLKLERDVHQRElkdltsslqsvkTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQC 761
Cdd:TIGR02168 724 LSRQISALRKDLARL------------EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 762 DRLTEELTQN-------ENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQEsilgvigkE 834
Cdd:TIGR02168 792 EQLKEELKALrealdelRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE--------E 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 835 IDAACKTFSKDSVEKLKVFSSgpdihydPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLtENKESELQ 914
Cdd:TIGR02168 864 LEELIEELESELEALLNERAS-------LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL-ELRLEGLE 935
|
810
....*....|....*
gi 767979869 915 CLFQQIerQEQLLDE 929
Cdd:TIGR02168 936 VRIDNL--QERLSEE 948
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
283-664 |
3.53e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 283 QLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDR-KGLQHQVSQISKQQSnyqdEQGEDWRFRRGVEREKQDL 361
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREReKAERYQALLKEKREY----EGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 362 EKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELEN-GEKQQLQMLDRLKEIqnhfdtcEAERKHA 440
Cdd:TIGR02169 243 ERQLASLE---------EELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGEL-------EAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 441 DLQISELTRHAEDATKQAERYLSELQQSEALKEEAEkrredlklkaqESIRQWKLKHKKLERALEKQSETVDELTGKNNQ 520
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE-----------REIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 521 ILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSK 600
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 601 IQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAiRADLANKLAEEERAKKAVLKD 664
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA-QARASEERVRGGRAVEEVLKA 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
191-745 |
4.54e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 4.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 191 RSDAETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGlMSLQLQEALKKQEAKADEHEGAI 270
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKK---ADAAKKKAEEAKKAAEAAKAEAEAAADEAE-AAEEKAEAAEKKKEEAKKKADAA 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 271 KNK---LRQTETEKNQLEQELELSRRLLNQSEGSR--ETLLHQVEELRTQ---LTKAEGDRKGLQHQVSQISKQQSNYQD 342
Cdd:PTZ00121 1384 KKKaeeKKKADEAKKKAEEDKKKADELKKAAAAKKkaDEAKKKAEEKKKAdeaKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 343 EQGEDwrFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDR 422
Cdd:PTZ00121 1464 KKAEE--AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 423 LKEIQNhfdtCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLER 502
Cdd:PTZ00121 1542 AEEKKK----ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 503 ALEKQSETvdeltGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKR---ALQEEELHSKEEKLRDI------KSH 573
Cdd:PTZ00121 1618 AKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeAKKAEEDKKKAEEAKKAeedekkAAE 1692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 574 QADLELEVKNSLDTIHRLESELKKQSKiqsQMKVEKAHLEEEIAELKKSQAQDKAKLLEM---QESIKDLSAIRADLANK 650
Cdd:PTZ00121 1693 ALKKEAEEAKKAEELKKKEAEEKKKAE---ELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkdEEEKKKIAHLKKEEEKK 1769
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 651 LAEEERAKKAVLKDlsDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELM---KHFKKEKS 727
Cdd:PTZ00121 1770 AEEIRKEKEAVIEE--ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVAdskNMQLEEAD 1847
|
570
....*....|....*...
gi 767979869 728 EAENHIRTLKAESLEEKN 745
Cdd:PTZ00121 1848 AFEKHKFNKNNENGEDGN 1865
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
193-615 |
5.83e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 5.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 193 DAETKRALEELteklneaqkqEVVSDRVErRLQELEREMRTERELVERrqdqlglmslqlqealkkqeakadehegaikn 272
Cdd:TIGR02169 169 DRKKEKALEEL----------EEVEENIE-RLDLIIDEKRQQLERLRR-------------------------------- 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 273 klrqtetEKNQLEQELELSRRLlnqSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqqsnyqdeqgedwrfrr 352
Cdd:TIGR02169 206 -------EREKAERYQALLKEK---REYEGYELLKEKEALERQKEAIERQLASLEEELEKL------------------- 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 353 gvEREKQDLEKQMSDLRVQLNfsamaselEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIqnhfdt 432
Cdd:TIGR02169 257 --TEEISELEKRLEEIEQLLE--------ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA------ 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 433 cEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQE---SIRQWKLKHKKLERALEKQSE 509
Cdd:TIGR02169 321 -EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkEFAETRDELKDYREKLEKLKR 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 510 TVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIH 589
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
410 420
....*....|....*....|....*.
gi 767979869 590 RLESELKKQSKIQSQMKVEKAHLEEE 615
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEER 505
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
218-815 |
6.24e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 6.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 218 DRVERRLQELEREMRTERELVERrqdqlglmSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQ 297
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEK--------FIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 298 SEGSRETLlhqvEELRTQLTKAEGDRKGLQHQVSQISKQqsnyqdeqgedwrfRRGVEREKQDLEKQMSDLR----VQLN 373
Cdd:PRK03918 233 LEELKEEI----EELEKELESLEGSKRKLEEKIRELEER--------------IEELKKEIEELEEKVKELKelkeKAEE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 374 FSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQlqmlDRLKEIQNHFDtcEAERKHADLqiseltrhaed 453
Cdd:PRK03918 295 YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE----ERLEELKKKLK--ELEKRLEEL----------- 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 454 atkqaERYLSELQQSEALKEEAEKRREDLKLKAQESIrqwKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT--- 530
Cdd:PRK03918 358 -----EERHELYEEAKAKKEELERLKKRLTGLTPEKL---EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKaie 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 531 QLYAALQQIENLRKELNDVLTKRALQE--EELHSKEEKLRDIKSHQADLELEVKNsLDTIHRLESELKKQSKIQSQMKVE 608
Cdd:PRK03918 430 ELKKAKGKCPVCGRELTEEHRKELLEEytAELKRIEKELKEIEEKERKLRKELRE-LEKVLKKESELIKLKELAEQLKEL 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 609 KAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLtaqaksrDEETATIITQLKL 688
Cdd:PRK03918 509 EEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDEL-------EEELAELLKELEE 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 689 ERDVHQRELKDLTSSLQSVKTKH------EQNIQELMKHFKKEKSEAENHIRTLKaeslEEKNMAKIHRGQLEKLKSQCD 762
Cdd:PRK03918 582 LGFESVEELEERLKELEPFYNEYlelkdaEKELEREEKELKKLEEELDKAFEELA----ETEKRLEELRKELEELEKKYS 657
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 767979869 763 -----RLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKD 815
Cdd:PRK03918 658 eeeyeELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
153-597 |
1.36e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMR 232
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 233 TERELVERRQDQLGLMSLQLQEALKKQEAKAdEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEEL 312
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 313 RTQLTKAEGDRKGLQHQVSQI--SKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNfsamASELEEVKRCMER 390
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVkaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV----VEDDEVAAAAIEY 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 391 -KDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSE 469
Cdd:COG1196 566 lKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 470 ALKEEAEkrREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDV 549
Cdd:COG1196 646 LREVTLE--GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 767979869 550 LTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK 597
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
380-709 |
1.79e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 380 ELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQlQMLDRLKEIQ-----NHFDTCEAERKHADLQISELTRHAEDA 454
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQ-ALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 455 TKQAERYLSELQQSEALKEEAEKRREDL----KLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKt 530
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL- 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 531 qlyaalQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDT-------IHRLESELKKQSKIQS 603
Cdd:TIGR02169 336 ------AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDElkdyrekLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 604 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAiradlanKLAEEERAKKAVLKDLSDLTAQAKSRDEEtatiI 683
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL-------EIKKQEWKLEQLAADLSKYEQELYDLKEE----Y 478
|
330 340
....*....|....*....|....*.
gi 767979869 684 TQLKLERDVHQRELKDLTSSLQSVKT 709
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQARASEE 504
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
199-808 |
4.62e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 60.57 E-value: 4.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 199 ALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEgaiknKLRQTE 278
Cdd:pfam01576 357 ALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESE-----RQRAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 279 TEK-NQLEQELELSRRLLNQSEG----------SRETLLHQVEELRTQLTKAegdRKGLQHQVSQISKQQSNYQDEQGED 347
Cdd:pfam01576 432 AEKlSKLQSELESVSSLLNEAEGkniklskdvsSLESQLQDTQELLQEETRQ---KLNLSTRLRQLEDERNSLQEQLEEE 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 348 WRFRRGVEREKQDLEKQMSDLRVQLNFSA------------MASELEEVKRCMERKDKEKAHLASQVENLTRELEN---G 412
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKKLEEDAgtlealeegkkrLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDllvD 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 413 EKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKqaERYLSELQQSEALKEEAEKRREdlklkAQESIRQ 492
Cdd:pfam01576 589 LDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAR--EKETRALSLARALEEALEAKEE-----LERTNKQ 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 493 WKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ---LYAALQQIEN--LRKELNdVLTKRALQEEELHSKEEK- 566
Cdd:pfam01576 662 LRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQleeLEDELQATEDakLRLEVN-MQALKAQFERDLQARDEQg 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 567 -------LRDIKSHQADLELEVK---NSLDTIHRLESELKkqsKIQSQMKVEKAHLEEEIAELKKSQAQDKakllEMQES 636
Cdd:pfam01576 741 eekrrqlVKQVRELEAELEDERKqraQAVAAKKKLELDLK---ELEAQIDAANKGREEAVKQLKKLQAQMK----DLQRE 813
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 637 IKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETatiiTQLKLERDVHQRELKDLTSSLQSVktkheqniq 716
Cdd:pfam01576 814 LEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERAR----RQAQQERDELADEIASGASGKSAL--------- 880
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 717 elmkhfKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELT--------------QNENENKKLKLKY 782
Cdd:pfam01576 881 ------QDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAaerstsqksesarqQLERQNKELKAKL 954
|
650 660
....*....|....*....|....*..
gi 767979869 783 QCLKDQLEEREK-HISIEEEHLRRMEE 808
Cdd:pfam01576 955 QEMEGTVKSKFKsSIAALEAKIAQLEE 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
268-933 |
4.64e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 4.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 268 GAIKNKLRQTETEKNqleqeLELSRRLLNQSEGSRETLLHQVEELRTQLTKAEgDRKGLQHQVSQISKQQSNYQDEQGED 347
Cdd:TIGR02168 166 GISKYKERRKETERK-----LERTRENLDRLEDILNELERQLKSLERQAEKAE-RYKELKAELRELELALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 348 WrfRRGVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQqlqmldrlKEIQ 427
Cdd:TIGR02168 240 E--LEELQEELKEAEEELEELTAELQ--ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ--------KQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 428 NhfdtceAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQW---KLKHKKLERAL 504
Cdd:TIGR02168 308 R------ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeelESRLEELEEQL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 505 EKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQE-----EELHSKEEKLRDIKSHQADLEL 579
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEELERLEE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 580 EVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLeEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKK 659
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 660 AVLKD-------------LSDLTAQAKSR---------DEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQE 717
Cdd:TIGR02168 541 AALGGrlqavvvenlnaaKKAIAFLKQNElgrvtflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSY 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 718 LMKHF-----------KKEKSEAENHIRTLKAES------------------LEEKNMAKIHRGQLEKLKSQCDRLTEEL 768
Cdd:TIGR02168 621 LLGGVlvvddldnaleLAKKLRPGYRIVTLDGDLvrpggvitggsaktnssiLERRREIEELEEKIEELEEKIAELEKAL 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 769 TQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSKDSVE 848
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 849 KLKVFSSGPDIHYDPHRW------LAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES---ELQCLFQQ 919
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELkalreaLDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEElseDIESLAAE 860
|
730
....*....|....
gi 767979869 920 IERQEQLLDEIHRE 933
Cdd:TIGR02168 861 IEELEELIEELESE 874
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
381-932 |
5.92e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 5.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 381 LEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAER 460
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 461 YLSELQQSEALKE---EAEKRREDLKLKaqesIRQWKLKHKKLERaLEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:PRK03918 247 LESLEGSKRKLEEkirELEERIEELKKE----IEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 538 QIENLRKELNDVLTKRALQEE-------------ELHSKEEKLRDIKSHQADLE-LEVKNSLDTIHRLESELKKQSKIQS 603
Cdd:PRK03918 322 EINGIEERIKELEEKEERLEElkkklkelekrleELEERHELYEEAKAKKEELErLKKRLTGLTPEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 604 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADL-----ANKLAEEERAKKAVLKDLSDLTAQAKSRDEE 678
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 679 TATIITQLKLERDVhqRELKDLTSSLQSVKtkheqniQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:PRK03918 482 LRELEKVLKKESEL--IKLKELAEQLKELE-------EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 759 SqcdrLTEELTQNENENKKLKLKYQCLKDQLEERE-KHISIEEEHLRRMEEAR---LQLKDQLLCLETEQESIlgvigke 834
Cdd:PRK03918 553 E----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYneyLELKDAEKELEREEKEL------- 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 835 idAACKTFSKDSVEKlkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKNLRHqlmlcrQQLRNLTENKESELQ 914
Cdd:PRK03918 622 --KKLEEELDKAFEE-----------------LAETEKRLEELRKELEELEKKYSEEEY------EELREEYLELSRELA 676
|
570
....*....|....*...
gi 767979869 915 CLFQQIERQEQLLDEIHR 932
Cdd:PRK03918 677 GLRAELEELEKRREEIKK 694
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-629 |
5.77e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 5.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 399 ASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKR 478
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 479 REDLKLKAQESIRQWKLKHKKLERALEKQSETVdeltgknNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEE 558
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDF-------LDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979869 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAK 629
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
475-831 |
1.08e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 475 AEKRREDLKLKAQESIRQWKLKHKKLERALEKqsetvdeLTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRA 554
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSS-------LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 555 LQEEELHSKEEKLRDIKshqadlelevknslDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKllEMQ 634
Cdd:TIGR02169 734 KLKERLEELEEDLSSLE--------------QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP--EIQ 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 635 ESIKDLSAIRADLANKLAEEERAkkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS---SLQSVKTKH 711
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQK----LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGkkeELEEELEEL 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 712 EQNIQEL---MKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLK------LKY 782
Cdd:TIGR02169 874 EAALRDLesrLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeeLSL 953
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 767979869 783 QCLKDQLEEREKHISIEE-------EHLRRMEEARLQLKDQLLCLETEQESILGVI 831
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
451-794 |
1.85e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 531 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKA 610
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKkavlKDLSDLTAQAKSRDEEtatIITQLKLER 690
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE----EELEKLQEKLEQLEEE---LLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 691 DVHQRELKDLTSSLqSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQ 770
Cdd:pfam02463 384 ERLSSAAKLKEEEL-ELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLK 462
|
330 340
....*....|....*....|....
gi 767979869 771 NENENKKLKLKYQCLKDQLEEREK 794
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQL 486
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
532-739 |
2.10e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 532 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAH 611
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 612 LEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERD 691
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 767979869 692 VHQRELKDLTSSLQSVKTKHEQNiQELMKHFKKEKSEAENHIRTLKAE 739
Cdd:COG4942 175 ELEALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-411 |
3.05e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMR 232
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 233 TERELVERRQDQLGlmslQLQEALKKQEAKADEHEgaikNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEEL 312
Cdd:TIGR02168 800 ALREALDELRAELT----LLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 313 RTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQL--------NFSAMASE---- 380
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLeglevridNLQERLSEeysl 951
|
250 260 270
....*....|....*....|....*....|..
gi 767979869 381 -LEEVKRCMERKDKEKAHLASQVENLTRELEN 411
Cdd:TIGR02168 952 tLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
214-929 |
5.03e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 5.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 214 EVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLE---QELEL 290
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQntvHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 291 SRRLLNQSEGSRETllhQVEELRTQLTKAEGdrkglqhQVSQISKQQSNYQDEQGEdwrfrrgvereKQDLEKQMSDLRV 370
Cdd:pfam15921 157 AKCLKEDMLEDSNT---QIEQLRKMMLSHEG-------VLQEIRSILVDFEEASGK-----------KIYEHDSMSTMHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 371 QLNFSAMASELEEVkrcmerkDKEKAHLASQVENLTRELENGEKQQLQMLDRLkeIQNHFDTCEAERKHADLQISELTRH 450
Cdd:pfam15921 216 RSLGSAISKILREL-------DTEISYLKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEQLISEHEVEITGLTEK 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 451 AEDATKQAERYLSELQ--QSEALKEEA---------EKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNN 519
Cdd:pfam15921 287 ASSARSQANSIQSQLEiiQEQARNQNSmymrqlsdlESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERD 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 520 QILKEKDELKTQLYAALQQIENLRKELNdvLTKRalQEEELHSKEEKLRDIKSHqadLELEVKNSLDTIHRLESELKK-Q 598
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLHKREKELS--LEKE--QNKRLWDRDTGNSITIDH---LRRELDDRNMEVQRLEALLKAmK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 599 SKIQSQMKVEKAHLEEEIAELKKSQAqdkakLLEMQESIKDLsairadlANKLAEEERAKKAVLKD----LSDLTAQAKS 674
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSS-----LTAQLESTKEM-------LRKVVEELTAKKMTLESsertVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 675 RD---EETATIITQLKLERDVHQRELkdltsslQSVKTKHEqniqelmkHFKKEKSEAEnhirTLKAESLEEKNMAKIHR 751
Cdd:pfam15921 508 KEraiEATNAEITKLRSRVDLKLQEL-------QHLKNEGD--------HLRNVQTECE----ALKLQMAEKDKVIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 752 GQLEKLksqcdrlteelTQNENENKKLKLKYQCLKDQLEerekhisieeehlRRMEEARLQLKDQLLCLETEQESIlgvi 831
Cdd:pfam15921 569 QQIENM-----------TQLVGQHGRTAGAMQVEKAQLE-------------KEINDRRLELQEFKILKDKKDAKI---- 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 832 gKEIDAackTFSKDSVEKLKVFSSGPDihydPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES 911
Cdd:pfam15921 621 -RELEA---RVSDLELEKVKLVNAGSE----RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMET 692
|
730
....*....|....*...
gi 767979869 912 ELQCLFQQIERQEQLLDE 929
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQ 710
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
156-369 |
5.59e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 5.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 156 DDMTQLHGFHQSLRDLSsEQIRLgddfnreLSRRSRSDAETKRALEELTEklNEAQKQEVVSDRVERRLQELEREMRTER 235
Cdd:COG4913 232 EHFDDLERAHEALEDAR-EQIEL-------LEPIRELAERYAAARERLAE--LEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 236 ELVERRQDQLglmslqlqEALKKQEAKADEHEGAIKNKLRQTETE-KNQLEQELELSRRLLNQSEGSRETLLHQVEELRT 314
Cdd:COG4913 302 AELARLEAEL--------ERLEARLDALREELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 767979869 315 QLTKAEGD----RKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLR 369
Cdd:COG4913 374 PLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
152-411 |
7.24e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 7.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 152 VQETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREM 231
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 232 RTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAiKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEE 311
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-LNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 312 LRTQLTKAEGDRKGLQHQVSQISKQQSN-YQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQL------NFSAMAsELEEV 384
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARRRLKRLENKIkelgpvNLAAIE-EYEEL 998
|
250 260
....*....|....*....|....*..
gi 767979869 385 KrcmERKDkekaHLASQVENLTRELEN 411
Cdd:TIGR02168 999 K---ERYD----FLTAQKEDLTEAKET 1018
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
177-623 |
8.86e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 8.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 177 RLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEAL 256
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 257 KKQEAKADEHEGAIKNK-----------LRQTETEKNQLEQEL-ELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRK 324
Cdd:COG4717 130 LYQELEALEAELAELPErleeleerleeLRELEEELEELEAELaELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 325 GLQHQVSQIsKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVqlnFSAMASELEEVKRCMERKDKEKAHLASQVEN 404
Cdd:COG4717 210 ELEEELEEA-QEELEELEEELEQLENELEAAALEERLKEARLLLLI---AAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 405 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 484
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 485 KAQESIRQWKLKHKKLE-----RALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQI--ENLRKELNDVLTKRALQE 557
Cdd:COG4717 366 EELEQEIAALLAEAGVEdeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELE 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767979869 558 EELHSKEEKLRDIKSHQADLELEVKNS--LDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQ 623
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAelLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
183-677 |
8.99e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 8.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 183 NRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSlQLQEALKKQEAK 262
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR-EIEKRLSRLEEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 263 ADEHEGAIKnKLRQTETEKNQLEQELELSRRLLNQSEGSREtLLHQVEELRTQLTKAEGDRKGLqhQVSQISKQQSNYQD 342
Cdd:PRK03918 323 INGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 343 EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNfsamasELEEVKRCME--RKDKEKAHLASQVENLTRELENGEKQQLQML 420
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIE------ELKKAKGKCPvcGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 421 DRLKEIQNHFDTCEAERKHAdlqiSELTRHAE--DATKQAERYLSELQqsealKEEAEKRREDLKLKAQESIrqwklKHK 498
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKE----SELIKLKElaEQLKELEEKLKKYN-----LEELEKKAEEYEKLKEKLI-----KLK 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 499 KLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKShqadle 578
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK------ 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 579 lEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKllEMQESIKDLSAIRADLANKLAEEERAK 658
Cdd:PRK03918 613 -ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRR 689
|
490
....*....|....*....
gi 767979869 659 KAVLKDLSDLTAQAKSRDE 677
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREK 708
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
198-706 |
1.66e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.10 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 198 RALEELTEKLNEAQKQEVVSDRVERRLQELER--------------EMRTEREL---VERRQDQLGLMSLQLQEALKKQE 260
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKkhqqlceeknalqeQLQAETELcaeAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 261 AKADEHEgaikNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQ--- 337
Cdd:pfam01576 82 SRLEEEE----ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERkll 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 338 ----SNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMA-SELEEVKRCMERKDKEK----AHLASQVENLTRE 408
Cdd:pfam01576 158 eeriSEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrQELEKAKRKLEGESTDLqeqiAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 409 LENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEdaTKQAERYLSElQQSEALKEEAEKRREDLKLKAQE 488
Cdd:pfam01576 238 LAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLE--SERAARNKAE-KQRRDLGEELEALKTELEDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 489 SIRQWKLKHKK------LERALE---------------KQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELN 547
Cdd:pfam01576 315 TAAQQELRSKReqevteLKKALEeetrsheaqlqemrqKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELR 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELkKSQAQDK 627
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL-ESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 628 AKLLE--------MQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQ---AKSRDEETATIITQLKLERDVHQRE 696
Cdd:pfam01576 474 QELLQeetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQlsdMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570
....*....|
gi 767979869 697 LKDLTSSLQS 706
Cdd:pfam01576 554 LEALTQQLEE 563
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
170-677 |
1.67e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.21 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 170 DLSSEQIRLgDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGlMS 249
Cdd:PRK01156 191 KLKSSNLEL-ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS-ME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 250 LQLQEALKKQEAKADEHEG----AIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETL--LHQVEELRTQLTKAEGDR 323
Cdd:PRK01156 269 LEKNNYYKELEERHMKIINdpvyKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIkkLSVLQKDYNDYIKKKSRY 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 324 KGLQHQVSQISKQQSNYQD-----EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHL 398
Cdd:PRK01156 349 DDLNNQILELEGYEMDYNSylksiESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 399 ASQVENLtRELENGEKQQLQML---------------DRLKEIQNHFDT----CEAERKHADLQISELTRHAEDATKQAE 459
Cdd:PRK01156 429 NQRIRAL-RENLDELSRNMEMLngqsvcpvcgttlgeEKSNHIINHYNEkksrLEEKIREIEIEVKDIDEKIVDLKKRKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 460 RYLS-ELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEK-QSETVDELTGKNNqilkekDELKTQLYAALQ 537
Cdd:PRK01156 508 YLESeEINKSINEYNKIESARADLE-DIKIKINELKDKHDKYEEIKNRyKSLKLEDLDSKRT------SWLNALAVISLI 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 538 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 617
Cdd:PRK01156 581 DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA 660
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767979869 618 ELK---KSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 677
Cdd:PRK01156 661 EIDsiiPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
200-736 |
1.95e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 200 LEELTEKLNEAQKQ----EVVSDRVERRLQELEREMRTERElvERRQDQLGLMSL----QLQEALKKQEAKADEHEGAIK 271
Cdd:TIGR04523 154 LEKLNNKYNDLKKQkeelENELNLLEKEKLNIQKNIDKIKN--KLLKLELLLSNLkkkiQKNKSLESQISELKKQNNQLK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 272 NKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRfr 351
Cdd:TIGR04523 232 DNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN-- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 352 RGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQqlqmldrLKEIQNHFD 431
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNN--KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE-------IEKLKKENQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 432 TCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK---LKAQESIR-------QWKLKHKKLE 501
Cdd:TIGR04523 381 SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKetiIKNNSEIKdltnqdsVKELIIKNLD 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 502 RALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEV 581
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 582 KNSLDTIHRLESELKKqskiqSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAV 661
Cdd:TIGR04523 541 SDLEDELNKDDFELKK-----ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 662 LKDLSDLTAQAK----------SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK--------------------- 710
Cdd:TIGR04523 616 EKELEKAKKENEklssiiknikSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKiddiielmkdwlkelslhykk 695
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 767979869 711 ----------------HEQNIQELMKHFKKEKSEAENHIRTL 736
Cdd:TIGR04523 696 yitrmirikdlpkleeKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
240-526 |
2.05e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 240 RRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSE-----GSRETLLHQVEELRT 314
Cdd:COG4913 599 RSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWdeidvASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 315 QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKE 394
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 395 --KAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFdtceaeRKHADLQISELTRHAEDatkqAERYLSELQQseaLK 472
Cdd:COG4913 759 lgDAVERELRENLEERIDALRARLNRAEEELERAMRAF------NREWPAETADLDADLES----LPEYLALLDR---LE 825
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 767979869 473 EE--AEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknNQILKEKD 526
Cdd:COG4913 826 EDglPEYEERFKELLNENSIEFVADLLSKLRRAIREIKERIDPL----NDSLKRIP 877
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
201-772 |
2.20e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 201 EELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGaIKNKLRQTETE 280
Cdd:pfam05483 233 KEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED-IKMSLQRSMST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 281 KNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqqsnyqdeqgedwrfrrgVEREKQD 360
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEL--------------------LRTEQQR 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 361 LEKQMSDLRV-QLNFSAMASELEEVKRCMERKDKEKAHLAS---QVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAE 436
Cdd:pfam05483 372 LEKNEDQLKIiTMELQKKSSELEEMTKFKNNKEVELEELKKilaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 437 RKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTG 516
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQE----ASDMTLELKKHQEDIINCKK 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 517 KNNQILKEKDELKTQLYAALQQIENLRKELndvLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK 596
Cdd:pfam05483 528 QEERMLKQIENLEEKEMNLRDELESVREEF---IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 597 KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRD 676
Cdd:pfam05483 605 NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIA 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 677 EETATIITQLKLErdvHQRELKDLTSSLQSVKTKHEQNIQE------LMKHFKKEKSEA----ENHIRTLKAESLEEKNM 746
Cdd:pfam05483 685 DEAVKLQKEIDKR---CQHKIAEMVALMEKHKHQYDKIIEErdselgLYKNKEQEQSSAkaalEIELSNIKAELLSLKKQ 761
|
570 580
....*....|....*....|....*.
gi 767979869 747 AKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:pfam05483 762 LEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
451-681 |
2.59e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 451 AEDATKQAERYLSELQQSealKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:COG4942 18 QADAAAEAEAELEQLQQE---IAELEKELAALKKEEKALLKQ----LAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 531 QLYAALQQIENLRKELNDVLtkRALQEEELHSKEE----------------KLRDIKSHQADLELEVKNSLDTIHRLESE 594
Cdd:COG4942 91 EIAELRAELEAQKEELAELL--RALYRLGRQPPLAlllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 595 LKKQSKIQSQMKVEkahLEEEIAELKKSQAqdkakllEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 674
Cdd:COG4942 169 LEAERAELEALLAE---LEEERAALEALKA-------ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 767979869 675 RDEETAT 681
Cdd:COG4942 239 AAERTPA 245
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
450-674 |
3.48e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 450 HAEDATKQAErylSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELK 529
Cdd:COG3883 13 FADPQIQAKQ---KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 530 TQLyAALQQIENLRKELNDVLTKRALQEeeLHSKEEKLRDIKSHQADLelevknsldtIHRLESELKKQSKIQSQMKVEK 609
Cdd:COG3883 90 ERA-RALYRSGGSVSYLDVLLGSESFSD--FLDRLSALSKIADADADL----------LEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767979869 610 AHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 674
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
486-680 |
4.93e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 4.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEE 565
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 566 KLRDIKSHQADLE-----LEVKNSLDTIHRLE----------SELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKL 630
Cdd:COG3883 91 RARALYRSGGSVSyldvlLGSESFSDFLDRLSalskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 767979869 631 LEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETA 680
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
209-751 |
5.50e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 5.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 209 EAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlglmSLQLQEALKKQEAKADEHEgaiknklrQTETEKNQLEQEL 288
Cdd:PRK02224 193 KAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQ----REQARETRDEADEVLEEHE--------ERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 289 ELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwrfrrgVEREKQDLEKQMSDL 368
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE-------LEDRDEELRDRLEEC 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 369 RVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELT 448
Cdd:PRK02224 334 RVAA--QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 449 RHAEDATKQAERYLSELQQSEA-LKEEAEKRREDLKLKAQ----------------ESIRQWKLKHKKLERALEKQSETV 511
Cdd:PRK02224 412 DFLEELREERDELREREAELEAtLRTARERVEEAEALLEAgkcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 512 DEltgknnqiLKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 591
Cdd:PRK02224 492 EE--------VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 592 ESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDkAKLLEMQESIKDLSAIRADLA-------NKLAE--------EER 656
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERIESLERIRTLL-AAIADAEDEIERLREKREALAelnderrERLAEkrerkrelEAE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 657 AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKT-----KHEQNIQELMKHFKKEKSEAEN 731
Cdd:PRK02224 643 FDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElrerrEALENRVEALEALYDEAEELES 722
|
570 580
....*....|....*....|
gi 767979869 732 HIRTLKAEsLEEKNMAKIHR 751
Cdd:PRK02224 723 MYGDLRAE-LRQRNVETLER 741
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
252-470 |
6.68e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 6.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 252 LQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELE--LSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQ 329
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 330 VSQISKQQSNYQDEQGEDWRFR--RGVEREKQDLEKQMSDLRVQL--NFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYtpNHPDVIALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767979869 406 TRELENGEKQQLQMLDRLKEIQNHFDTCEAErkhadlqISELTRHAEDATKQAERYLSELQQSEA 470
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAE-------LRRLEREVEVARELYESLLQRLEEARL 379
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
389-794 |
9.31e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 9.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADL--QISELTRHAEDATKQAERYLSELQ 466
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 467 QSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKEL 546
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 547 NDVLTKRALQEEELHSKEE----KLRDIKSHQADLELEVKNSLDTI---------------HRLESELKKQSKIQSQMKV 607
Cdd:COG4717 237 EAAALEERLKEARLLLLIAaallALLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANklAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLK 687
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 688 LERDVHQRELKDLTSSLQSvktkHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEknmakihrgQLEKLKSQCDRLTEE 767
Cdd:COG4717 395 EEYQELKEELEELEEQLEE----LLGELEELLEALDEEELEEELEELEEELEELEE---------ELEELREELAELEAE 461
|
410 420
....*....|....*....|....*....
gi 767979869 768 LTQNENENK--KLKLKYQCLKDQLEEREK 794
Cdd:COG4717 462 LEQLEEDGElaELLQELEELKAELRELAE 490
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
184-935 |
9.48e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 9.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 184 RELSRRSRSDAETKRALEEL----TEKLNEAQKQEVvsdRVERRLQELE---REMRTERELVERRQDQLGLMSLQLQEAL 256
Cdd:pfam01576 29 KELEKKHQQLCEEKNALQEQlqaeTELCAEAEEMRA---RLAARKQELEeilHELESRLEEEEERSQQLQNEKKKMQQHI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 257 KKQEAKADEHEGAiKNKLR----QTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQ 332
Cdd:pfam01576 106 QDLEEQLDEEEAA-RQKLQlekvTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 333 ISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENG 412
Cdd:pfam01576 185 HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI--AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNA 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 413 EKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQ 492
Cdd:pfam01576 263 LKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRS 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 493 WKLKHKKLEralEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKS 572
Cdd:pfam01576 343 HEAQLQEMR---QKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQA 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 573 HQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKkSQAQDKAKLLE--------MQESIKDLSAIR 644
Cdd:pfam01576 420 RLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLE-SQLQDTQELLQeetrqklnLSTRLRQLEDER 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 645 ADLANKLAEEERAKKAVLKDLSDLTAQ---AKSRDEETATIITQLKLERDVHQRELKDLTSSLqsvktkheqniqelmkh 721
Cdd:pfam01576 499 NSLQEQLEEEEEAKRNVERQLSTLQAQlsdMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL----------------- 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 722 fkKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLE----EREKHIS 797
Cdd:pfam01576 562 --EEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEaearEKETRAL 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 798 IEEEHLRRMEEARLQLKDQLLCLETEQESILgvigkeidaACKTFSKDSVEKLKVFSSGPDihydphRWLAESKTKLQWL 877
Cdd:pfam01576 640 SLARALEEALEAKEELERTNKQLRAEMEDLV---------SSKDDVGKNVHELERSKRALE------QQVEEMKTQLEEL 704
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 767979869 878 CEELKERENREKNLrhqlmlcrqqlrnltenkESELQCLFQQIERQEQLLDEIHREKR 935
Cdd:pfam01576 705 EDELQATEDAKLRL------------------EVNMQALKAQFERDLQARDEQGEEKR 744
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
400-911 |
1.05e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 400 SQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQA----------ERYLSELQQSE 469
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLkknkdkinklNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 470 ALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDV 549
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 550 LTKRALQEEELHSKEEKLRDIKSHQADL-ELEVKNSLDTiHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQIsELKKQNNQLK-DNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 629 KLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLS-DLTAQAKSRDEETATIITQLKlERDVHQRELKDLTSSLQSV 707
Cdd:TIGR04523 272 KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNkELKSELKNQEKKLEEIQNQIS-QNNKIISQLNEQISQLKKE 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 708 KTKHEQNIQELmkhfKKEKSEAENHIRTLKAESLEEKNmakihrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKD 787
Cdd:TIGR04523 351 LTNSESENSEK----QRELEEKQNEIEKLKKENQSYKQ-------EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 788 QLEEREKHIsieeehlRRMEEARLQLKDQLLCLeTEQESILGVIGKEIDaackTFSKDSVEKLKVFSsgpdihydphRWL 867
Cdd:TIGR04523 420 EKELLEKEI-------ERLKETIIKNNSEIKDL-TNQDSVKELIIKNLD----NTRESLETQLKVLS----------RSI 477
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 767979869 868 AESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES 911
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISS 521
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
176-578 |
1.10e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 176 IRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMslqlQEA 255
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK----EEL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 256 LKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTK--------AEGDRKGLq 327
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKEL- 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 328 hqVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:PRK03918 454 --LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 408 ELENGEKQQLQMLD-----------RLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLS-------ELQQSE 469
Cdd:PRK03918 532 EKLIKLKGEIKSLKkelekleelkkKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyneylELKDAE 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 470 ALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE-----TVDELTGKNNQILKEKDELKtQLYAALQQIENLRK 544
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElekkySEEEYEELREEYLELSRELA-GLRAELEELEKRRE 690
|
410 420 430
....*....|....*....|....*....|....
gi 767979869 545 ELNDVLTKRALQEEELHSKEEKLRDIKSHQADLE 578
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
185-476 |
1.45e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 185 ELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELvERRQdqlglmslqlQEALKKQEAKAD 264
Cdd:pfam17380 328 EMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMREL-ERLQ----------MERQQKNERVRQ 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 265 EHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQqsnyqdeq 344
Cdd:pfam17380 397 ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ-------- 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 345 gEDWRFRRGVEREKQDLEKQMSDlrvQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLK 424
Cdd:pfam17380 469 -EEERKRKKLELEKEKRDRKRAE---EQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRK 544
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 767979869 425 EIQNHfdtcEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAE 476
Cdd:pfam17380 545 QQEME----ERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
271-933 |
1.62e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 271 KNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRF 350
Cdd:TIGR04523 25 KNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSD 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 351 RRGVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRC-------MERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL 423
Cdd:TIGR04523 105 LSKINSEIKNDKEQKNKLEVELN--KLEKQKKENKKNidkflteIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 424 KEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERA 503
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEI----NEKTTEISNTQTQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 504 LEKQSETVDELTGKNNQILKEK---DELKTQLYAALQQIENLRKELNDVLTKRAlqEEELHSKEEKLRDIKShqadlelE 580
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNkkiKELEKQLNQLKSEISDLNNQKEQDWNKEL--KSELKNQEKKLEEIQN-------Q 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 581 VKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERakka 660
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK---- 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 661 vlkdlsdltaQAKSRDEEtatiITQLKLERDVHQRELKDLTSSlqsvKTKHEQNIQELmkhfKKEKSEAENHIRTLKAES 740
Cdd:TIGR04523 406 ----------LNQQKDEQ----IKKLQQEKELLEKEIERLKET----IIKNNSEIKDL----TNQDSVKELIIKNLDNTR 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 741 LEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCL 820
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 821 ETEQESILGVIGKEIdaacktfskdsveklkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKNlrhqlmlCRQ 900
Cdd:TIGR04523 544 EDELNKDDFELKKEN-------------------------------LEKEIDEKNKEIEELKQTQKSLKK-------KQE 585
|
650 660 670
....*....|....*....|....*....|...
gi 767979869 901 QLRNLTENKESELQCLFQQIERQEQLLDEIHRE 933
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
165-449 |
1.85e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 165 HQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRT-ERELVERRQD 243
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSRIP 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 244 QLGLMSLQLQEALKKQEAKADEHEGAIKNKlrqtETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDR 323
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIEQKLNRL----TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 324 KGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLN-----FSAMASELEEVKRCMERKDKEKAHL 398
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSelkakLEALEEELSEIEDPKGEDEEIPEEE 950
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 399 AS------QVENLTRELENGE-------KQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR 449
Cdd:TIGR02169 951 LSledvqaELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
418-647 |
2.36e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 418 QMLDRLKEIQNHFDTceaerkhadlqISELTRHAEDATKQAERyLSELQQSEALKEEAEKRREDLK--------LKAQES 489
Cdd:COG4913 222 DTFEAADALVEHFDD-----------LERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEylraalrlWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA--------LQQIENLRKELNDVLTKRALQEEELH 561
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 562 SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ----SKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESI 637
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250
....*....|.
gi 767979869 638 KD-LSAIRADL 647
Cdd:COG4913 450 AEaLGLDEAEL 460
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
452-629 |
2.42e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 452 EDATKQAERYlSELQQSEAlKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDEltgKNNQILKEKDELKtq 531
Cdd:PRK12704 45 EEAKKEAEAI-KKEALLEA-KEEIHKLRNEF----EKELRERRNELQKLEKRLLQKEENLDR---KLELLEKREEELE-- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 532 lyaalQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADlelEVKNSLdtIHRLESELKKqskiqsqmkvEKAH 611
Cdd:PRK12704 114 -----KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---EAKEIL--LEKVEEEARH----------EAAV 173
|
170
....*....|....*...
gi 767979869 612 LEEEIAELKKSQAQDKAK 629
Cdd:PRK12704 174 LIKEIEEEAKEEADKKAK 191
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
200-725 |
2.68e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 200 LEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTET 279
Cdd:COG4913 237 LERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 280 EKNQLEQELELSRRLLNQSEGSR-ETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqQSNYQDEQGEDWRFRRGVEREK 358
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAAL---GLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 359 QDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELengekqqLQMLDRLkeiqnhfdtCEAERK 438
Cdd:COG4913 394 EALEEELEALEEAL--AEAEAALRDLRRELRELEAEIASLERRKSNIPARL-------LALRDAL---------AEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 439 HAD--------LQISELTRHAEDAtkqAERYLS----------------------------------ELQQSEALKEEAE 476
Cdd:COG4913 456 DEAelpfvgelIEVRPEEERWRGA---IERVLGgfaltllvppehyaaalrwvnrlhlrgrlvyervRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 477 KRREDLKLKAQES-IRQWklkhkkLERALEKQS-----ETVDELTG-----------KNNQILKEKD---ELKTQLY--- 533
Cdd:COG4913 533 PDSLAGKLDFKPHpFRAW------LEAELGRRFdyvcvDSPEELRRhpraitragqvKGNGTRHEKDdrrRIRSRYVlgf 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 534 ---AALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADL------ELEVKNSLDTIHRLESELKkqskiqsq 604
Cdd:COG4913 607 dnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAELE-------- 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 605 mKVEKAHleEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIIT 684
Cdd:COG4913 679 -RLDASS--DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 767979869 685 QLKLERDVHQRELKDLTSSLQSVKTK---HEQNIQELMKHFKKE 725
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRARlnrAEEELERAMRAFNRE 799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-584 |
2.75e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 194 AETKRALEELtEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQdqlglMSLQLQEALKKQEAKADEHEGAIKNK 273
Cdd:PTZ00121 1530 AEEAKKADEA-KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN-----MALRKAEEAKKAEEARIEEVMKLYEE 1603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 274 LRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRG 353
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 354 VEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRlkeiqnhfdtc 433
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD----------- 1752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 434 EAERKHADLQISELTRHAEDATKQAERYLSE--LQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETV 511
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEelDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767979869 512 DELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNS 584
Cdd:PTZ00121 1833 KEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNN 1905
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
439-681 |
3.42e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 439 HADLQISELTRHAEDATKQAERYLSEL----QQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDEL 514
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELdalqAELEELNEEYNELQAELE-ALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 515 ------TGKNNQIL------KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVK 582
Cdd:COG3883 92 aralyrSGGSVSYLdvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 583 NsldtihrLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVL 662
Cdd:COG3883 172 E-------LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
250
....*....|....*....
gi 767979869 663 KDLSDLTAQAKSRDEETAT 681
Cdd:COG3883 245 SAAGAGAAGAAGAAAGSAG 263
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
218-576 |
3.76e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLR---QTETEKNQLEQELELSRRL 294
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRlfdEKQSEKDKKNKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 295 LNQsegsretllhqveelrtQLTKAEGDRKGLQHQVSQISKQQSNYQDE-QGEDWRFRRGVEREKQDLEKQMSDLRVQLn 373
Cdd:pfam12128 680 ANE-----------------RLNSLEAQLKQLDKKHQAWLEEQKEQKREaRTEKQAYWQVVEGALDAQLALLKAAIAAR- 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 374 FSAMASELEEVKRCMERKDKEK-------AHLASQVENLTRELENGEKQQLQMLdRLKEIQNHfdTCEAERKHADLQISE 446
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASLgvdpdviAKLKREIRTLERKIERIAVRRQEVL-RYFDWYQE--TWLQRRPRLATQLSN 818
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 447 LTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQseTVDELTGKNNQILKEKD 526
Cdd:pfam12128 819 IERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDA--NSEQAQGSIGERLAQLE 896
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 767979869 527 ELKTQLYAALQQIENLRKELNDVLTKraLQEEELHSKEEKLRDIKSHQAD 576
Cdd:pfam12128 897 DLKLKRDYLSESVKKYVEHFKNVIAD--HSGSGLAETWESLREEDHYQND 944
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
451-825 |
4.19e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSetVDELTGKNNQILKEKDELKT 530
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEEL----EAELEELREELEKLEKLLQLLP--LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 531 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQ-ADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEK 609
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 610 AHLEEEIAELKKSQAQDKAKLL----------------------EMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSD 667
Cdd:COG4717 230 EQLENELEAAALEERLKEARLLlliaaallallglggsllslilTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 668 LTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQnIQELMKHFKKEKSEAENH--IRTLKAESLEEKN 745
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE-AEELEEELQLEELEQEIAalLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 746 MAKIHRGQLEKLKSQCDRLTEELTQNENENKKL--KLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETE 823
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
..
gi 767979869 824 QE 825
Cdd:COG4717 469 GE 470
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
172-807 |
4.24e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 4.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 172 SSEQIRLGDDFNRELSRRSRSDAETKRALEELT---EKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLM 248
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEELRaqeAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKM 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 249 SLQLQEALKKQEAKADEHEGAIKNKLRQT---ETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKG 325
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 326 ----LQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMAselEEVKRCMERKDKEKAHLASQ 401
Cdd:TIGR00618 401 eldiLQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE---KIHLQESAQSLKEREQQLQT 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 402 VENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISEL--------------TRHAEDATKQAERYLSELQQ 467
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPgpltrrmqrgeqtyAQLETSEEDVYHQLTSERKQ 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 468 SEALKEEAEKRREDLKLKAQ------ESIRQWKLKHKKLERALEKQSETVDELTGKNnQILKEKDELKTQLYAALQQIEN 541
Cdd:TIGR00618 558 RASLKEQMQEIQQSFSILTQcdnrskEDIPNLQNITVRLQDLTEKLSEAEDMLACEQ-HALLRKLQPEQDLQDVRLHLQQ 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 542 LRKELNDVLTKRALQEEEL--HSKEEKLRDIKSHQADLELEVKNSLDtihRLESELKKQSKIQSQMKVEKAHLEEEIAEL 619
Cdd:TIGR00618 637 CSQELALKLTALHALQLTLtqERVREHALSIRVLPKELLASRQLALQ---KMQSEKEQLTYWKEMLAQCQTLLRELETHI 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 620 KKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR---DEETATIITQLKLERDVHQRE 696
Cdd:TIGR00618 714 EEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEvtaALQTGAELSHLAAEIQFFNRL 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 697 LKDLTSSLQSVKTKHEQniqelmkHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENK 776
Cdd:TIGR00618 794 REEDTHLLKTLEAEIGQ-------EIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQ 866
|
650 660 670
....*....|....*....|....*....|.
gi 767979869 777 KLKLKYQCLKDQLEEREKHISIEEEHLRRME 807
Cdd:TIGR00618 867 EQAKIIQLSDKLNGINQIKIQFDGDALIKFL 897
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
753-935 |
5.44e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 5.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 753 QLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIG 832
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 833 KEIDAACKTfSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESE 912
Cdd:COG4942 108 ELLRALYRL-GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180
....*....|....*....|...
gi 767979869 913 LQCLFQQIERQEQLLDEIHREKR 935
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELA 209
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
276-794 |
6.41e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 6.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 276 QTETEKNQLEQELELSRRLLNQSEGSRETLlHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRfrrGVE 355
Cdd:TIGR00606 225 QITSKEAQLESSREIVKSYENELDPLKNRL-KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQ---GTD 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 356 REKQDLE--KQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTC 433
Cdd:TIGR00606 301 EQLNDLYhnHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 434 EAER-----KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQS 508
Cdd:TIGR00606 381 GFERgpfseRQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 509 ETVDELTGKNNQILKEKDELKTQLY------------AALQQIENLRKELNDVLTKRALQEEELH--------------- 561
Cdd:TIGR00606 461 KELQQLEGSSDRILELDQELRKAERelskaeknslteTLKKEVKSLQNEKADLDRKLRKLDQEMEqlnhhtttrtqmeml 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 562 -----SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQES 636
Cdd:TIGR00606 541 tkdkmDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 637 IKDLSAIRADLANKLAEE---ERAKKAVLKDLSDLtAQAKSRDEETATIITQLKLERD----VHQRELKDltsslqsvkt 709
Cdd:TIGR00606 621 LSSYEDKLFDVCGSQDEEsdlERLKEEIEKSSKQR-AMLAGATAVYSQFITQLTDENQsccpVCQRVFQT---------- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 710 khEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQL 789
Cdd:TIGR00606 690 --EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI 767
|
....*
gi 767979869 790 EEREK 794
Cdd:TIGR00606 768 EEQET 772
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
500-715 |
9.19e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 500 LERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEEKLRDIKSHQADLEL 579
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP---SAALNKLNTAAAKIKS 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 580 EVKnSLDTIHR--------------LESELKKQSKIQSQMKVekahLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRA 645
Cdd:PHA02562 270 KIE-QFQKVIKmyekggvcptctqqISEGPDRITKIKDKLKE----LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKN 344
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 646 DLANK---LAEEERAKKAVLKDLSDLTAQAKSRDEETATIitqlklerdvhQRELKDLTSSLQS-VKTKHEQNI 715
Cdd:PHA02562 345 KISTNkqsLITLVDKAKKVKAAIEELQAEFVDNAEELAKL-----------QDELDKIVKTKSElVKEKYHRGI 407
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
413-668 |
1.19e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 45.84 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 413 EKQQLQMLDR-------LKEIQNHFdtceAERKHADLQISELTRHAEDATKQAERYLSELQQSEALK----EEAEKRRED 481
Cdd:COG0497 140 PDAQRELLDAfagleelLEEYREAY----RAWRALKKELEELRADEAERARELDLLRFQLEELEAAAlqpgEEEELEEER 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 482 LKLKAQESIRQwKLKH----------------KKLERALEKQSETVDELtgknnqilkekDELKTQLYAALQQIENLRKE 545
Cdd:COG0497 216 RRLSNAEKLRE-ALQEalealsggeggaldllGQALRALERLAEYDPSL-----------AELAERLESALIELEEAASE 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 546 LNDVLTKRALQEEELHSKEEKLRDIKS----HQADLElEVknsLDTIHRLESELKKQSkiqsqmkvekaHLEEEIAELKK 621
Cdd:COG0497 284 LRRYLDSLEFDPERLEEVEERLALLRRlarkYGVTVE-EL---LAYAEELRAELAELE-----------NSDERLEELEA 348
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 767979869 622 SQAQDKAKLLEMQEsikDLSAIRADLANKLAeeerakKAVLKDLSDL 668
Cdd:COG0497 349 ELAEAEAELLEAAE---KLSAARKKAAKKLE------KAVTAELADL 386
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
434-801 |
1.35e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.72 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 434 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKlkaqESIRQWKLKHKKLERALEKQSETVDE 513
Cdd:COG5185 193 SELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPE----SELEDLAQTSDKLEKLVEQNTDLRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 514 LTGKNNQILKEKDELKTQLyaaLQQIENLRKELNDVlTKRALQEEELHSKEEKLR--DIKSHQADLELEVKNSLDtihRL 591
Cdd:COG5185 269 KLGENAESSKRLNENANNL---IKQFENTKEKIAEY-TKSIDIKKATESLEEQLAaaEAEQELEESKRETETGIQ---NL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 592 ESELKK-QSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQesikdLSAIRADLANKLAEEERAKKAVLKDLSDLTA 670
Cdd:COG5185 342 TAEIEQgQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDT-----IESTKESLDEIPQNQRGYAQEILATLEDTLK 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 671 QAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQelmkhfkKEKSEAENHIRTLKAESLEEKNmakih 750
Cdd:COG5185 417 AADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQ-------SRLEEAYDEINRSVRSKKEDLN----- 484
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 767979869 751 rGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEE 801
Cdd:COG5185 485 -EELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARG 534
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
527-682 |
1.61e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 527 ELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK--KQSKIQSQ 604
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNKEYEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767979869 605 MKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDL-SDLTAQAKSRDEETATI 682
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELeAELEELEAEREELAAKI 172
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
198-548 |
1.66e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 45.82 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 198 RALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERElvERRQDQLGLMSLQL-QEALKK-----QEAKADEHEgaiK 271
Cdd:PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERD--EPRSVPPNMSTDALeQEILQVssqllEKSRQAQQE---Q 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 272 NKLRQTETEKNQLEQELELSRRLLN------QSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISkqqSNYQDEQG 345
Cdd:PRK10929 130 DRAREISDSLSQLPQQQTEARRQLNeierrlQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLS---ANNRQELA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 346 edwRFRRGV-EREKQDLEKQMSDLRVQLNFSAMaselEEVKRCMERKDKekahLASQVENL----------TRELENGEK 414
Cdd:PRK10929 207 ---RLRSELaKKRSQQLDAYLQALRNQLNSQRQ----REAERALESTEL----LAEQSGDLpksivaqfkiNRELSQALN 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 415 QQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDAT-------KQAERyLSELQQSEALKEEAEKRR------ED 481
Cdd:PRK10929 276 QQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNalgealrAQVAR-LPEMPKPQQLDTEMAQLRvqrlryED 354
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979869 482 LkLKAQESIRQWKLKH-----KKLERALEKQSETVDEL-----TGKNNQILkekdELkTQLYAALQQIENLRKELND 548
Cdd:PRK10929 355 L-LNKQPQLRQIRQADgqpltAEQNRILDAQLRTQRELlnsllSGGDTLIL----EL-TKLKVANSQLEDALKEVNE 425
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
392-612 |
1.81e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 392 DKEKAHLASQVENLTRELENGEKQQLQMLDRLkeiQNHFDTCEAERKHADLQISELTRHAEDATKQAERYlselqqSEAL 471
Cdd:PHA02562 187 DMKIDHIQQQIKTYNKNIEEQRKKNGENIARK---QNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP------SAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 472 KEEAEKRredLKLKAQesIRQWKLKHKKLE---------RALEKQSETVDELTGKNNQILKEKDELKTQlYAALQQIEN- 541
Cdd:PHA02562 258 NKLNTAA---AKIKSK--IEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTA-IDELEEIMDe 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 542 ---LRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHL 612
Cdd:PHA02562 332 fneQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-730 |
1.86e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQiSELTRhAEDATKQAERYLSELQQS 468
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAE-REIAE-LEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 469 EALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 548
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 549 VLTKRALQEEELHSKEEKLRDI-KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQmkvEKAHLEEEIAELKKSQAQDK 627
Cdd:COG4913 771 LEERIDALRARLNRAEEELERAmRAFNREWPAETADLDADLESLPEYLALLDRLEED---GLPEYEERFKELLNENSIEF 847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 628 akllemqesikdlsaiRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVH--QRELKDLTSSLQ 705
Cdd:COG4913 848 ----------------VADLLSKLRRAIREIKERIDPLNDSLKRIPFGPGRYLRLEARPRPDPEVRefRQELRAVTSGAS 911
|
330 340
....*....|....*....|....*....
gi 767979869 706 ----SVKTKHEQNIQELMKHFKKEKSEAE 730
Cdd:COG4913 912 lfdeELSEARFAALKRLIERLRSEEEESD 940
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
180-675 |
2.79e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQevVSDRVERRLQELEREMRTERELVERRQDQLGlmslQLQEALKKQ 259
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRA----RLEALLAAL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 260 EAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGsretllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN 339
Cdd:COG4913 372 GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA-------ALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 340 YQD-----------------------EQGEDWR-----------------------FRRGVEREKqdlekqmsdLRVQLN 373
Cdd:COG4913 445 LRDalaealgldeaelpfvgelievrPEEERWRgaiervlggfaltllvppehyaaALRWVNRLH---------LRGRLV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 374 FsamaselEEVKRCMERKDKEKAHLASqvenLTRELENGEKQQLQMLDRlkEIQNHFD--TCEAER--KHADLQISE--L 447
Cdd:COG4913 516 Y-------ERVRTGLPDPERPRLDPDS----LAGKLDFKPHPFRAWLEA--ELGRRFDyvCVDSPEelRRHPRAITRagQ 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 448 TRHAEDA-TKQAERYLSELQQseaLKEEAEKRREDLKLKAQEsirqwklkhkkLERALEKQSETVDELTgknnqilKEKD 526
Cdd:COG4913 583 VKGNGTRhEKDDRRRIRSRYV---LGFDNRAKLAALEAELAE-----------LEEELAEAEERLEALE-------AELD 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 527 ELKTQLyAALQQIENLRKELNDVLTkralQEEELHSKEEKLRDIKSHQADL-ELEvknslDTIHRLESELKKQSKIQSQM 605
Cdd:COG4913 642 ALQERR-EALQRLAEYSWDEIDVAS----AEREIAELEAELERLDASSDDLaALE-----EQLEELEAELEELEEELDEL 711
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 606 KVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR 675
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRAR 781
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
391-553 |
2.89e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.19 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 391 KDKEKAHLASQVENLTR--ELENGEKQQLQmlDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQS 468
Cdd:PRK09039 51 KDSALDRLNSQIAELADllSLERQGNQDLQ--DSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 469 EALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEkQSETVDEltGKNNQIlkekDELKTQLYAAL----QQIENLRK 544
Cdd:PRK09039 129 KQVSARALAQVELL----NQQIAALRRQLAALEAALD-ASEKRDR--ESQAKI----ADLGRRLNVALaqrvQELNRYRS 197
|
170
....*....|...
gi 767979869 545 E----LNDVLTKR 553
Cdd:PRK09039 198 EffgrLREILGDR 210
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
210-814 |
3.71e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 210 AQKQEVvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKadEHEGAIKNKLRQTETEKNQLEQELE 289
Cdd:pfam12128 218 LNRQQV--EHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYK--SDETLIASRQEERQETSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 290 LSRRLLNQSegsretllhqVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfrrGVEREKQDLEkQMSDLR 369
Cdd:pfam12128 294 TLDDQWKEK----------RDELNGELSAADAAVAKDRSELEALEDQHGAFLDA---------DIETAAADQE-QLPSWQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 370 VQL-NFSAMASELEEVKRCMERK-DKEKAHLASQVENLTRELENGEKQQLQMLDRLK-EIQNHFDTCEAERKHadlQISE 446
Cdd:pfam12128 354 SELeNLEERLKALTGKHQDVTAKyNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLaVAEDDLQALESELRE---QLEA 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 447 LTRHAEDATKQAERYLSELQ--------------QSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVD 512
Cdd:pfam12128 431 GKLEFNEEEYRLKSRLGELKlrlnqatatpelllQLENFDERIERAREEQE-AANAEVERLQSELRQARKRRDQASEALR 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 513 ELTGKNNQILKEKDELKTQLYAALQQ-IENLRKELND-------VLTKRALQEEELH--------SKEEKLRDIKSH--- 573
Cdd:pfam12128 510 QASRRLEERQSALDELELQLFPQAGTlLHFLRKEAPDweqsigkVISPELLHRTDLDpevwdgsvGGELNLYGVKLDlkr 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 574 -----QADLELEVKNSLDtihRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLA 648
Cdd:pfam12128 590 idvpeWAASEEELRERLD---KAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEK 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 649 NKLAEE-ERAKKAVLKDLSDLTAQAK-----------SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQ 716
Cdd:pfam12128 667 DKKNKAlAERKDSANERLNSLEAQLKqldkkhqawleEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 717 ELMKHFKKEKSeaenhiRTLKAESLEEKNMAKIHRG--QLEKLKSQCDRLTEELTQNEN-ENKKLKLKYQCLKDQLEERE 793
Cdd:pfam12128 747 AELKALETWYK------RDLASLGVDPDVIAKLKREirTLERKIERIAVRRQEVLRYFDwYQETWLQRRPRLATQLSNIE 820
|
650 660
....*....|....*....|..
gi 767979869 794 KHIS-IEEEHLRRMEEARLQLK 814
Cdd:pfam12128 821 RAISeLQQQLARLIADTKLRRA 842
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
463-825 |
4.00e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 463 SELQQSEALKEEAEKRREDLKLKAQEsirqwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENL 542
Cdd:PRK02224 220 EEIERYEEQREQARETRDEADEVLEE--------HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 543 RKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKS 622
Cdd:PRK02224 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 623 QAQDKAKLLEMQESIKDLsairadlanklaEEErakkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS 702
Cdd:PRK02224 372 LEEAREAVEDRREEIEEL------------EEE------IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 703 SLQSVKTKHEQNiQELMKHFK----KEKSEAENHIRTL-----KAESLEEknmakihrgQLEKLKSQCDRLTEELTQNEn 773
Cdd:PRK02224 434 TLRTARERVEEA-EALLEAGKcpecGQPVEGSPHVETIeedreRVEELEA---------ELEDLEEEVEEVEERLERAE- 502
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 767979869 774 ENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQE 825
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-700 |
4.19e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT-----QLYAALQQIENLRKELNDVLTKRALQ--EEELHS 562
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELlepirELAERYAAARERLAELEYLRAALRLWfaQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 563 KEEKLRDIKSHQADLELEV---KNSLDTIHRLESELKKQskIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD 639
Cdd:COG4913 293 LEAELEELRAELARLEAELerlEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979869 640 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 700
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
227-665 |
4.25e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 4.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 227 LEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAiknkLRQTETEKNQLEQELELSRRLLNQSEGSRETL- 305
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEE----YAELQEELEELEEELEELEAELEELREELEKLe 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 306 -LHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQM--SDLRVQLNFSAMASELE 382
Cdd:COG4717 123 kLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLeqLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 383 EVKRCMERKDKEKAHLASQVENLTRELENGEKQQL--QMLDRLKEIQNHFDT----CEAERKHADLQISELTRHAEDATK 456
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEaaALEERLKEARLLLLIaaalLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 457 QAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKhkKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAAL 536
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE--ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 537 QQ--IENLRKELNDVLTKRALQEEE----LHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELkkqskiqsqmkvEKA 610
Cdd:COG4717 361 EElqLEELEQEIAALLAEAGVEDEEelraALEQAEEYQELKEELEELEEQLEELLGELEELLEAL------------DEE 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLAN-----KLAEEERAKKAVLKDL 665
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgelaELLQELEELKAELREL 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-415 |
5.90e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQ 259
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 260 EAkadehegAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN 339
Cdd:COG4942 103 KE-------ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767979869 340 YQDEQGEdwrfrrgVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQ 415
Cdd:COG4942 176 LEALLAE-------LEEERAALEALKAERQKLLA--RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
355-712 |
6.65e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 6.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 355 EREKQDLEKQMSDLRVQlnfsamaSELEEVKRCMERKdkekahlasqvenltRELENGEKQQLQMLDRLKEIQNHFDTCE 434
Cdd:pfam17380 286 ERQQQEKFEKMEQERLR-------QEKEEKAREVERR---------------RKLEEAEKARQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 435 AERkhadlqiseltrhaedatkqaERYLSELQQSEALKEEAEKRREDLklkAQESIRQWKLKHKKLERAlEKQSETVDEL 514
Cdd:pfam17380 344 MER---------------------ERELERIRQEERKRELERIRQEEI---AMEISRMRELERLQMERQ-QKNERVRQEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 515 TGKNNQILKEKdELKTQLYAALQQIENLRKElndvlTKRALQEEELHSKEEKLRDIKSHQADlELEVKNSLDTIHRLESE 594
Cdd:pfam17380 399 EAARKVKILEE-ERQRKIQQQKVEMEQIRAE-----QEEARQREVRRLEEERAREMERVRLE-EQERQQQVERLRQQEEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 595 LKKQSKIQSQMKVEKAHLEEEIAE-LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAK 673
Cdd:pfam17380 472 RKRKKLELEKEKRDRKRAEEQRRKiLEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*....
gi 767979869 674 SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHE 712
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
166-644 |
7.16e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 7.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 166 QSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQL 245
Cdd:TIGR00618 393 QKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 246 GLmsLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKG 325
Cdd:TIGR00618 473 QQ--LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 326 LQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKahLASQVENL 405
Cdd:TIGR00618 551 LTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK--LQPEQDLQ 628
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 406 TRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYL-SELQQSEALKEEAEKRREDLKL 484
Cdd:TIGR00618 629 DVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMqSEKEQLTYWKEMLAQCQTLLRE 708
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 485 KAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYA--------------ALQQIENLRKELNDVL 550
Cdd:TIGR00618 709 LETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKArteahfnnneevtaALQTGAELSHLAAEIQ 788
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 551 TKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKL 630
Cdd:TIGR00618 789 FFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
490
....*....|....
gi 767979869 631 LEMQESIKDLSAIR 644
Cdd:TIGR00618 869 AKIIQLSDKLNGIN 882
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
188-808 |
7.86e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 188 RRSRSDAETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEAlkkqeakadehE 267
Cdd:TIGR00606 402 RQEDEAKTAAQLCADLQSKERLKQEQ---ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL-----------E 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 268 GAIKNKLrqteteknQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRK---------GLQHQVSQISKQQS 338
Cdd:TIGR00606 468 GSSDRIL--------ELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKlrkldqemeQLNHHTTTRTQMEM 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 339 NYQDEQGEDWRFRRGVEREKQDLEKQMSDL----RVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEK 414
Cdd:TIGR00606 540 LTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 415 QQLQMLDRLkeiqnhFDTCEAERKHADLQisELTRHAEDATKQ-------AERYLSELQQSEALKE----------EAEK 477
Cdd:TIGR00606 620 QLSSYEDKL------FDVCGSQDEESDLE--RLKEEIEKSSKQramlagaTAVYSQFITQLTDENQsccpvcqrvfQTEA 691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 478 RREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQE 557
Cdd:TIGR00606 692 ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE 771
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 558 EELHSKEEKLRDIKSHQADLELevknsldtIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDKAKLLEMQESI 637
Cdd:TIGR00606 772 TLLGTIMPEEESAKVCLTDVTI--------MERFQMELKDVER-----KIAQQAAKLQGSDLDRTVQQVNQEKQEKQHEL 838
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 638 KDLSAiRADLANKLAEEERAKKAVLK-----------DLSDLTAQAKSRDEETATIITQLK-LERDVHQRelKDLTSSLQ 705
Cdd:TIGR00606 839 DTVVS-KIELNRKLIQDQQEQIQHLKsktnelkseklQIGTNLQRRQQFEEQLVELSTEVQsLIREIKDA--KEQDSPLE 915
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 706 SVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESleeKNMAKIHRGQLEKLKSQCDRlteELTQNENENKKLKLkyqcl 785
Cdd:TIGR00606 916 TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV---KNIHGYMKDIENKIQDGKDD---YLKQKETELNTVNA----- 984
|
650 660
....*....|....*....|...
gi 767979869 786 kdQLEEREKHISIEEEHLRRMEE 808
Cdd:TIGR00606 985 --QLEECEKHQEKINEDMRLMRQ 1005
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
210-458 |
8.27e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 8.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 210 AQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGlmslQLQEALKKQEAKadehegaiknkLRQTETEKNQLEQELE 289
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEK----ALLKQLAALERR-----------IAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 290 LSRRLLNQSEGSRETLLHQVEELRTQLTK--AEGDRKGLQHQVSQISKQQSNYQDEqgedwRFRRGVEREKQDLEKQMSD 367
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAEllRALYRLGRQPPLALLLSPEDFLDAV-----RRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 368 LRVQLNfsamasELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL----KEIQNHFDTCEAERKHADLQ 443
Cdd:COG4942 155 LRADLA------ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLekelAELAAELAELQQEAEELEAL 228
|
250
....*....|....*
gi 767979869 444 ISELTRHAEDATKQA 458
Cdd:COG4942 229 IARLEAEAAAAAERT 243
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
192-935 |
8.48e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 192 SDAETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIK 271
Cdd:TIGR00606 235 SSREIVKSYENELDPLKNRLKE---IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 272 NKLRQTETEKNQLEQELE---LSRRLLNQSEGSRET----LLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQ 344
Cdd:TIGR00606 312 RTVREKERELVDCQRELEklnKERRLLNQEKTELLVeqgrLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQ 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 345 GEDWR--FRRGVEREKQDLEKQMSDLRVQLNFSA-MASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLD 421
Cdd:TIGR00606 392 IKNFHtlVIERQEDEAKTAAQLCADLQSKERLKQeQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 422 RLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRqwKLKHKKLE 501
Cdd:TIGR00606 472 RILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT--KDKMDKDE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 502 RALEKQSETVDELTGK-----NNQIL--------KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLR 568
Cdd:TIGR00606 550 QIRKIKSRHSDELTSLlgyfpNKKQLedwlhsksKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 569 DIKSHQAdleLEVKnsldtIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQA-------QDKAKLLEMQESIKDLS 641
Cdd:TIGR00606 630 DVCGSQD---EESD-----LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqRVFQTEAELQEFISDLQ 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 642 AIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQ---RELKDLTSSLQSVKTKHEQNIQEL 718
Cdd:TIGR00606 702 SKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQkvnRDIQRLKNDIEEQETLLGTIMPEE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 719 ------------MKHFKKEKSEAENHIRTLKAESleEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLK 786
Cdd:TIGR00606 782 esakvcltdvtiMERFQMELKDVERKIAQQAAKL--QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 787 DQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVI--GKEIDAACKTFSKDSVEKLKVFSSGPDIHY--- 861
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIkdAKEQDSPLETFLEKDQQEKEELISSKETSNkka 939
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 862 ------------DPHRWLAESKTKLQWLCEE-LKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLD 928
Cdd:TIGR00606 940 qdkvndikekvkNIHGYMKDIENKIQDGKDDyLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD 1019
|
....*..
gi 767979869 929 EIHREKR 935
Cdd:TIGR00606 1020 NLTLRKR 1026
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
371-515 |
9.12e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 9.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 371 QLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEiqnhfdtcEAERKHADLqiseltrh 450
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE--------EAEKEAQQA-------- 578
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767979869 451 AEDATKQAERYLSELQQSEALKEEAEKRREdlklkAQESIRQWKLKHKKLERALEKQSETVDELT 515
Cdd:PRK00409 579 IKEAKKEADEIIKELRQLQKGGYASVKAHE-----LIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
218-567 |
1.01e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA------IKNKLRQTET-EKNQLEQElEL 290
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAsdhlnlVQTALRQQEKiERYQEDLE-EL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 291 SRRLLNQSEgsretllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQdeQGEDWRFRRGVEREK--QDLEK----- 363
Cdd:COG3096 360 TERLEEQEE--------VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQ--QALDVQQTRAIQYQQavQALEKaralc 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 364 QMSDLRV------QLNFSAMASELEEVKRCMERK-DKEKAHlASQ-------VENLTRELENGE--KQQLQMLDRLKEIQ 427
Cdd:COG3096 430 GLPDLTPenaedyLAAFRAKEQQATEEVLELEQKlSVADAA-RRQfekayelVCKIAGEVERSQawQTARELLRRYRSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 428 NHFDTCEA-ERKHADL-----QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwklkHKKLE 501
Cdd:COG3096 509 ALAQRLQQlRAQLAELeqrlrQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQ----RSELR 584
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767979869 502 RALEKQSETVDELTGKNNQILKEKD---ELKTQLYAAL---QQIENLRKELNDVLTKRALQEEELHSKEEKL 567
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLAAQDaleRLREQSGEALadsQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
183-569 |
1.04e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 183 NRELSRRSRSDAETKRalEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALkkqeak 262
Cdd:PRK02224 347 LREDADDLEERAEELR--EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR------ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 263 adEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQS---------EGSreTLLHQVEELRTQLTKAEGDRKGLQHQVSQI 333
Cdd:PRK02224 419 --EERDELREREAELEATLRTARERVEEAEALLEAGkcpecgqpvEGS--PHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 334 SKQQSNYQDEQGEDWRFRRGVEReKQDLEKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELENGE 413
Cdd:PRK02224 495 EERLERAEDLVEAEDRIERLEER-REDLEELIAERR---------ETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 414 KQQLQMLDRLKEIQNHFDTCEAERKHADlQISELTRHAEDATKQAERY------LSEL--QQSEALKEEAEKRREDLKLK 485
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLrekreaLAELndERRERLAEKRERKRELEAEF 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyAALQQIENLRKELnDVLTKRALQEEELHSKEE 565
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE----NELEELEELRERR-EALENRVEALEALYDEAE 718
|
....
gi 767979869 566 KLRD 569
Cdd:PRK02224 719 ELES 722
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
443-629 |
1.41e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.10 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 443 QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwKLKHKKLERALEKQSEtvdELTGKNNQIL 522
Cdd:PRK09510 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ-AEEAAKQAALKQKQAE---EAAAKAAAAA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 523 KEK-DELKTQLYAALQQIENLRKELNDVLTKrALQEEELHSKEEKLRDIKshqADLELEVKNSLDTIHRLESELKKQSKI 601
Cdd:PRK09510 146 KAKaEAEAKRAAAAAKKAAAEAKKKAEAEAA-KKAAAEAKKKAEAEAAAK---AAAEAKKKAEAEAKKKAAAEAKKKAAA 221
|
170 180
....*....|....*....|....*...
gi 767979869 602 QSQMKVEKAHLEEEIAELKKSQAQDKAK 629
Cdd:PRK09510 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
495-802 |
1.56e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 495 LKHKKLERALEKQSETVDELTGKNNQIlkekDELKTQLYAALQQIENLRKELNDvltkralqeeelhsKEEKLRDIKSHQ 574
Cdd:PRK01156 159 LEINSLERNYDKLKDVIDMLRAEISNI----DYLEEKLKSSNLELENIKKQIAD--------------DEKSHSITLKEI 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 575 ADLELEVKNSLDTIHRLESELKKQSKIQSqmkvEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE 654
Cdd:PRK01156 221 ERLSIEYNNAMDDYNNLKSALNELSSLED----MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNY 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 655 ERAKKAVLKDLSDLTAQAKSRDEETATIITQLK----LERD-----VHQRELKDLTSSLQSVKTkHEQNIQELMKHFKKE 725
Cdd:PRK01156 297 INDYFKYKNDIENKKQILSNIDAEINKYHAIIKklsvLQKDyndyiKKKSRYDDLNNQILELEG-YEMDYNSYLKSIESL 375
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767979869 726 KSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEH 802
Cdd:PRK01156 376 KKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQ 452
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
465-626 |
1.70e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 465 LQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkEKDELKTQLYAALQQIENLRK 544
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR---------EREELQREEERLVQKEEQLDA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 545 ELNDVltkrALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ---SKIQSQMKVEKAHL----EEEIA 617
Cdd:PRK12705 96 RAEKL----DNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKlllKLLDAELEEEKAQRvkkiEEEAD 171
|
....*....
gi 767979869 618 ELKKSQAQD 626
Cdd:PRK12705 172 LEAERKAQN 180
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
549-744 |
1.86e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 549 VLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 629 KLLE----MQESIKDLSAI--------------RADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLER 690
Cdd:COG3883 87 ELGEraraLYRSGGSVSYLdvllgsesfsdfldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767979869 691 DVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEK 744
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
469-743 |
1.87e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.34 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 469 EALKEEAEKRREDL-KLKAQESIRQWKLKHKKLERALEKQSETvdeltgknnqilKEKDELKTQlyaalqqienlRKELN 547
Cdd:PTZ00108 1105 EKLNAELEKKEKELeKLKNTTPKDMWLEDLDKFEEALEEQEEV------------EEKEIAKEQ-----------RLKSK 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDK 627
Cdd:PTZ00108 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVK 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 628 AKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSV 707
Cdd:PTZ00108 1242 RLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAAL 1321
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 767979869 708 KTKHEQNI---------QELMKHFKKEKSEAENHIRTLKAESLEE 743
Cdd:PTZ00108 1322 KKKKKSEKktarkkkskTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
586-792 |
1.87e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 586 DTIHRLESELK----KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKK-- 659
Cdd:PHA02562 174 DKIRELNQQIQtldmKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEdp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 660 -AVLKDLSDLTAQAKSRDEE-----------------TATIITQLKLERDVHQReLKDLTSSLQSVKTkHEQNIQELMKH 721
Cdd:PHA02562 254 sAALNKLNTAAAKIKSKIEQfqkvikmyekggvcptcTQQISEGPDRITKIKDK-LKELQHSLEKLDT-AIDELEEIMDE 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 722 F---KKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 792
Cdd:PHA02562 332 FneqSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
608-792 |
2.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQL- 686
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALy 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 687 -------KLERDVHQRELKDLTSSLQSVKTKHEQNiQELMKHFKKEKSEAENH---IRTLKAESLEEKNMAKIHRGQLEK 756
Cdd:COG3883 97 rsggsvsYLDVLLGSESFSDFLDRLSALSKIADAD-ADLLEELKADKAELEAKkaeLEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 767979869 757 LKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 792
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
252-807 |
2.50e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 252 LQEALKKQEAKADEHEGA-IKNKLRQTETEKNQLeqelelsrrllnqSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQV 330
Cdd:TIGR01612 701 LKSKIDKEYDKIQNMETAtVELHLSNIENKKNEL-------------LDIIVEIKKHIHGEINKDLNKILEDFKNKEKEL 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 331 SQISKQQSNYQDEQGEdwrfrrgverekqdLEKQMSDLRVQLN--FSAMASELEEVKRCMErKDKEKAHLASQVENLTRE 408
Cdd:TIGR01612 768 SNKINDYAKEKDELNK--------------YKSKISEIKNHYNdqINIDNIKDEDAKQNYD-KSKEYIKTISIKEDEIFK 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 409 LENGEK-QQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR--HAEDATKQAERYLSELQQSEALKEEAEKRRED---- 481
Cdd:TIGR01612 833 IINEMKfMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNkiKAEISDDKLNDYEKKFNDSKSLINEINKSIEEeyqn 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 482 ----------LKL--KAQESIRQWKLKHKKLERALEKQSETVDE---------------LTGKNNQILKEKDELKTQLYA 534
Cdd:TIGR01612 913 intlkkvdeyIKIceNTKESIEKFHNKQNILKEILNKNIDTIKEsnlieksykdkfdntLIDKINELDKAFKDASLNDYE 992
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 535 A-----LQQIENLRKEL-----NDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSL-DTIHRLESELKKQSKIQS 603
Cdd:TIGR01612 993 AknnelIKYFNDLKANLgknkeNMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIyNIIDEIEKEIGKNIELLN 1072
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 604 QMKVEKAhleeEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE-ERAKKAVLKDLSDLTAQAKSRDEETATI 682
Cdd:TIGR01612 1073 KEILEEA----EINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDiKNLDQKIDHHIKALEEIKKKSENYIDEI 1148
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 683 ITQL-KLE----RDVHQRELKDLTSSLQSVKTK--HEQNIQELMKHFKKEKSEAENhirtlKAESLEEKNMAKIHRGQ-L 754
Cdd:TIGR01612 1149 KAQInDLEdvadKAISNDDPEEIEKKIENIVTKidKKKNIYDEIKKLLNEIAEIEK-----DKTSLEEVKGINLSYGKnL 1223
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 767979869 755 EKLKsqCDRLTEELTQNENENKKLKLKYQCL---KDQLEEREKHISIEEEHLRRME 807
Cdd:TIGR01612 1224 GKLF--LEKIDEEKKKSEHMIKAMEAYIEDLdeiKEKSPEIENEMGIEMDIKAEME 1277
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
408-925 |
2.56e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 408 ELENGEKQQLQMLDrlKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSE-LQQSEALKEEAEKRREDLKLkA 486
Cdd:pfam12128 283 ETSAELNQLLRTLD--DQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPSWQSELEN-L 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 487 QESIRQWKLKHKKLERALEKQ-----SETVDELTGKNNQ---ILKEKDELKTQLYAALQQIEN-LRKELNDVLTKRALQE 557
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRrskikEQNNRDIAGIKDKlakIREARDRQLAVAEDDLQALESeLREQLEAGKLEFNEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 558 EELHSK--EEKLR-DIKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDK-----AK 629
Cdd:pfam12128 440 YRLKSRlgELKLRlNQATATPELLLQLENFDERIERAREEQEAANA-----EVERLQSELRQARKRRDQASEAlrqasRR 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 630 LLEMQESIKDLSAIRADLANKLAEEERAKKAVLK---------------DLSDLTAQAKSRDEETATIITqLKLER---- 690
Cdd:pfam12128 515 LEERQSALDELELQLFPQAGTLLHFLRKEAPDWEqsigkvispellhrtDLDPEVWDGSVGGELNLYGVK-LDLKRidvp 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 691 ------DVHQRELKDLTSSLQSVKTKHEQNIQELM---KHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEK----L 757
Cdd:pfam12128 594 ewaaseEELRERLDKAEEALQSAREKQAAAEEQLVqanGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKknkaL 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEArlQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEG--ALDAQLALLKAAIAARRSGAKAELKA 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 838 aCKTFSKDSVEKLKVfssGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLF 917
Cdd:pfam12128 752 -LETWYKRDLASLGV---DPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQ 827
|
....*...
gi 767979869 918 QQIERQEQ 925
Cdd:pfam12128 828 QQLARLIA 835
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
458-758 |
2.69e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 458 AERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:COG4372 1 GDRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 538 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 617
Cdd:COG4372 81 ELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 618 ELkksqaQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQREL 697
Cdd:COG4372 161 SL-----QEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLAL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767979869 698 KDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:COG4372 236 SALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELK 296
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
199-447 |
2.75e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 199 ALEELTEKLNEAQkqEVVSDRVERRLQELEREMRTERE------------------------------LVERRQDQLGLM 248
Cdd:PRK04863 356 DLEELEERLEEQN--EVVEEADEQQEENEARAEAAEEEvdelksqladyqqaldvqqtraiqyqqavqALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 249 SLQL------QEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGS------RETLLH--------- 307
Cdd:PRK04863 434 DLTAdnaedwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSeawdvaRELLRRlreqrhlae 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 308 QVEELRTQLTKAEGD---RKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQlnFSAMASELEEV 384
Cdd:PRK04863 514 QLQQLRMRLSELEQRlrqQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER--RMALRQQLEQL 591
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 385 KRCMER-KDKEKAHLASQvENLTR-------ELENGE---KQQLQMLDRLKEIQNHFDTCEAERKHADLQISEL 447
Cdd:PRK04863 592 QARIQRlAARAPAWLAAQ-DALARlreqsgeEFEDSQdvtEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
557-682 |
3.27e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 557 EEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK-QSKIQSQMKVEKA--HLEEEIAELKKsqaqdkaKLLEM 633
Cdd:COG2433 412 EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEaRSEERREIRKDREisRLDREIERLER-------ELEEE 484
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 767979869 634 QESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATI 682
Cdd:COG2433 485 RERIEELKRKLERLKELWKLEHSGELVPVKVVEKFTKEAIRRLEEEYGL 533
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
195-666 |
3.63e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 195 ETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKL 274
Cdd:pfam12128 461 ELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFL 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 275 RqteTEKNQLEQELE--LSRRLL---------NQSEGSRETLLHQV----------------EELRTQLTKAEGDRKGLQ 327
Cdd:pfam12128 541 R---KEAPDWEQSIGkvISPELLhrtdldpevWDGSVGGELNLYGVkldlkridvpewaaseEELRERLDKAEEALQSAR 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 328 HQVSQISKQQSNYQDEQGEdwrFRRGVEREKQDLEKqmSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:pfam12128 618 EKQAAAEEQLVQANGELEK---ASREETFARTALKN--ARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLK 692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 408 ELENGEKQQLQmldrlkEIQNHFDTCEAERKHADLQISELTRHAEDATKQA--ERYLSELQQSEALKEEaekRREDLKLK 485
Cdd:pfam12128 693 QLDKKHQAWLE------EQKEQKREARTEKQAYWQVVEGALDAQLALLKAAiaARRSGAKAELKALETW---YKRDLASL 763
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 486 AQESIRQWKLK------HKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNdvltkralqeee 559
Cdd:pfam12128 764 GVDPDVIAKLKreirtlERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLA------------ 831
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 560 lhskeEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSqmKVEKAHLEEEIAELKKSQAQDKAKLlemqesiKD 639
Cdd:pfam12128 832 -----RLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMS--KLATLKEDANSEQAQGSIGERLAQL-------ED 897
|
490 500
....*....|....*....|....*..
gi 767979869 640 LSAIRADLANKLAEEERAKKAVLKDLS 666
Cdd:pfam12128 898 LKLKRDYLSESVKKYVEHFKNVIADHS 924
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
600-837 |
3.74e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 600 KIQSQMKVEKAHLEEEIAE--LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 677
Cdd:pfam02463 146 IIAMMKPERRLEIEEEAAGsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 678 ETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKL 757
Cdd:pfam02463 226 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
251-796 |
3.75e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 251 QLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEElRTQLTKAEGDRKGLQHQV 330
Cdd:pfam05483 78 RLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEE-EIQENKDLIKENNATRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 331 SQISKQQSNYQDEQGEDWRFRRGVERE-KQDLEKQMSdlRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVEN-LTRE 408
Cdd:pfam05483 157 CNLLKETCARSAEKTKKYEYEREETRQvYMDLNNNIE--KMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEeYKKE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 409 LENGEKQQLQMLDRLKEIQNhfdtceaERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQE 488
Cdd:pfam05483 235 INDKEKQVSLLLIQITEKEN-------KMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQR 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 489 SIRqwklKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLtKRALQEEELHSKEEKLR 568
Cdd:pfam05483 308 SMS----TQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELL-RTEQQRLEKNEDQLKII 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 569 DIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQEsiKDLSAIRADLA 648
Cdd:pfam05483 383 TMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQARE--KEIHDLEIQLT 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 649 NKLAEEERAKKAVlKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVK------TKHEQNIQELMKHF 722
Cdd:pfam05483 461 AIKTSEEHYLKEV-EDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQediincKKQEERMLKQIENL 539
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767979869 723 KKEKSEAENHIRTLKAESLEEKNMAKIhrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHI 796
Cdd:pfam05483 540 EEKEMNLRDELESVREEFIQKGDEVKC---KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNI 610
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
494-660 |
4.07e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 494 KLKHKKLERALEKQSETVDELTGKNNQILKEKdelktqLYAALQQIENLRKELNDVLTKR----ALQEEELHSKEEKLRD 569
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA------LLEAKEEIHKLRNEFEKELRERrnelQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 570 IKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAqdKAKLLE-MQESIKDLSAIRADLA 648
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA--KEILLEkVEEEARHEAAVLIKEI 178
|
170
....*....|..
gi 767979869 649 NKLAEEERAKKA 660
Cdd:PRK12704 179 EEEAKEEADKKA 190
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
484-718 |
4.30e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 484 LKAQESIRQWKLKHKKLERALEKQSETVDELTGknnqilkEKDELKTQLYAALQQIENLRKELND------VLTKRALQe 557
Cdd:PRK04863 344 LRQQEKIERYQADLEELEERLEEQNEVVEEADE-------QQEENEARAEAAEEEVDELKSQLADyqqaldVQQTRAIQ- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 558 eeLHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQS----KIQSQMKVEKAHLE--EEIAEL--------KKSQ 623
Cdd:PRK04863 416 --YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATeellSLEQKLSVAQAAHSqfEQAYQLvrkiagevSRSE 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 624 AQDKAK-LLEMQESIKDLSAIRADLANKLAEEER--AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 700
Cdd:PRK04863 494 AWDVAReLLRRLREQRHLAEQLQQLRMRLSELEQrlRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSES 573
|
250
....*....|....*...
gi 767979869 701 TSSLQSVKTKHEQNIQEL 718
Cdd:PRK04863 574 VSEARERRMALRQQLEQL 591
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
456-657 |
4.43e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 456 KQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA 535
Cdd:PRK05771 40 LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKEL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 536 LQQIENLR--------------------------KELNDVLTKRALQEEELHSKEEKLRDI------KSHQADLE----- 578
Cdd:PRK05771 120 EQEIERLEpwgnfdldlslllgfkyvsvfvgtvpEDKLEELKLESDVENVEYISTDKGYVYvvvvvlKELSDEVEeelkk 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 579 --------LEVKNSLDTIHRLESELKKQSKiqsqmkvEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDlsaiRADLANK 650
Cdd:PRK05771 200 lgferlelEEEGTPSELIREIKEELEEIEK-------ERESLLEELKELAKKYLEELLALYEYLEIELE----RAEALSK 268
|
....*..
gi 767979869 651 LAEEERA 657
Cdd:PRK05771 269 FLKTDKT 275
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
221-828 |
4.48e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 221 ERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA------IKNKLRQTETEKNQLEQELELSRRL 294
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATrhlcnlLKETCARSAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 295 LNQSEGSRETLLHQVEELRTQLT--------KAEGDRKGLQHQVSQISKQ-------------QSNYQDEQGEDWRFRRG 353
Cdd:pfam05483 185 YMDLNNNIEKMILAFEELRVQAEnarlemhfKLKEDHEKIQHLEEEYKKEindkekqvsllliQITEKENKMKDLTFLLE 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 354 VEREKQDLEKQMSDLRVQ------LNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQ 427
Cdd:pfam05483 265 ESRDKANQLEEKTKLQDEnlkeliEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAK 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 428 NHFDTCEAERKHADLQISELTRHAEDATKQAERYL-----------SELQQSEALKEEAEKRREDLKLKAQESiRQWKLK 496
Cdd:pfam05483 345 AAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLkiitmelqkksSELEEMTKFKNNKEVELEELKKILAED-EKLLDE 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 497 HKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDV---LTKRALQEEELHSKEEKL----RD 569
Cdd:pfam05483 424 KKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLkteLEKEKLKNIELTAHCDKLllenKE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 570 IKSHQADLELEVKNSLDTI-------HRLESELKKQSKIQSQMKVEKAHLEEEIAE--------LKKSQAQDKAKLLEMQ 634
Cdd:pfam05483 504 LTQEASDMTLELKKHQEDIinckkqeERMLKQIENLEEKEMNLRDELESVREEFIQkgdevkckLDKSEENARSIEYEVL 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 635 ESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATI------ITQLKLERDVHQRELKDLTSSLQSVK 708
Cdd:pfam05483 584 KKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLnayeikVNKLELELASAKQKFEEIIDNYQKEI 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 709 TKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQ 788
Cdd:pfam05483 664 EDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAA 743
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 767979869 789 LEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESIL 828
Cdd:pfam05483 744 LEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAIL 783
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
168-343 |
7.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 168 LRDLSSEQIRLGDDFNRELSRRSRSDAETK--RALEELTEKLNEAQKQEVVSDRVERRLQELERemrtERELVERRQDQL 245
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDalQERREALQRLAEYSWDEIDVASAEREIAELEA----ELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 246 GLMSLQLqEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSREtlLHQVEELRTQLTKAEGD--- 322
Cdd:COG4913 688 AALEEQL-EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR--LELRALLEERFAAALGDave 764
|
170 180
....*....|....*....|....
gi 767979869 323 ---RKGLQHQVSQISKQQSNYQDE 343
Cdd:COG4913 765 relRENLEERIDALRARLNRAEEE 788
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
434-546 |
7.54e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 434 EAERKHADLQ----ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE 509
Cdd:PRK12704 52 EAIKKEALLEakeeIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 767979869 510 TVDELTGKNNQILKE-----KDELKTQLyaalqqIENLRKEL 546
Cdd:PRK12704 132 ELEELIEEQLQELERisgltAEEAKEIL------LEKVEEEA 167
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
201-297 |
9.60e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 39.64 E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767979869 201 EELTEKLNEAQ-KQEVVSDRVERRLQEL----------EREMRTErelVERRQDQLGLMSLQLQEALKKQE------AKA 263
Cdd:pfam10168 592 EKLAEKYEEIKdKQEKLMRRCKKVLQRLnsqlpvlsdaEREMKKE---LETINEQLKHLANAIKQAKKKMNyqryqiAKS 668
|
90 100 110
....*....|....*....|....*....|....*.
gi 767979869 264 DEHEG--AIKNKLRQTETEKNQLEQELELSRRLLNQ 297
Cdd:pfam10168 669 QSIRKksSLSLSEKQRKTIKEILKQLGSEIDELIKQ 704
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