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Conserved domains on  [gi|767903789|ref|XP_011539557|]
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transcription factor Gibbin isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4683 super family cl24338
Domain of unknown function (DUF4683); This domain family is found in eukaryotes, and is ...
594-642 5.92e-08

Domain of unknown function (DUF4683); This domain family is found in eukaryotes, and is typically between 384 and 400 amino acids in length.


The actual alignment was detected with superfamily member pfam15735:

Pssm-ID: 464832  Cd Length: 391  Bit Score: 56.80  E-value: 5.92e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 767903789   594 LASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSE 642
Cdd:pfam15735  343 LSPPQPSYNAETEDCDLNYSDVMSKLGFLSERSLSPTASTPPRCWSPTD 391
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
856-1052 5.90e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 47.95  E-value: 5.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767903789  856 ALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAVGSSGAGADPSFQPVLSARQTFPPGRAASYGLTPAA 935
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767903789  936 SDCRAAETFP---KLVPPPSAMARSPTTHPPANTYLPQYGGYG---------AGQSVFAPTKPFTGQDCANSKDCSFAYG 1003
Cdd:PRK12323  455 AAAPAAAARPaaaGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweelppefASPAPAQPDAAPAGWVAESIPDPATADP 534
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 767903789 1004 SGNSLPASPSSAHSAGYAPPPTGGPCLPPSKASFFSSSEGAPFSGSAPT 1052
Cdd:PRK12323  535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
 
Name Accession Description Interval E-value
DUF4683 pfam15735
Domain of unknown function (DUF4683); This domain family is found in eukaryotes, and is ...
594-642 5.92e-08

Domain of unknown function (DUF4683); This domain family is found in eukaryotes, and is typically between 384 and 400 amino acids in length.


Pssm-ID: 464832  Cd Length: 391  Bit Score: 56.80  E-value: 5.92e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 767903789   594 LASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSE 642
Cdd:pfam15735  343 LSPPQPSYNAETEDCDLNYSDVMSKLGFLSERSLSPTASTPPRCWSPTD 391
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
856-1052 5.90e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.95  E-value: 5.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767903789  856 ALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAVGSSGAGADPSFQPVLSARQTFPPGRAASYGLTPAA 935
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767903789  936 SDCRAAETFP---KLVPPPSAMARSPTTHPPANTYLPQYGGYG---------AGQSVFAPTKPFTGQDCANSKDCSFAYG 1003
Cdd:PRK12323  455 AAAPAAAARPaaaGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweelppefASPAPAQPDAAPAGWVAESIPDPATADP 534
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 767903789 1004 SGNSLPASPSSAHSAGYAPPPTGGPCLPPSKASFFSSSEGAPFSGSAPT 1052
Cdd:PRK12323  535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
 
Name Accession Description Interval E-value
DUF4683 pfam15735
Domain of unknown function (DUF4683); This domain family is found in eukaryotes, and is ...
594-642 5.92e-08

Domain of unknown function (DUF4683); This domain family is found in eukaryotes, and is typically between 384 and 400 amino acids in length.


Pssm-ID: 464832  Cd Length: 391  Bit Score: 56.80  E-value: 5.92e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 767903789   594 LASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSE 642
Cdd:pfam15735  343 LSPPQPSYNAETEDCDLNYSDVMSKLGFLSERSLSPTASTPPRCWSPTD 391
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
856-1052 5.90e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.95  E-value: 5.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767903789  856 ALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAVGSSGAGADPSFQPVLSARQTFPPGRAASYGLTPAA 935
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767903789  936 SDCRAAETFP---KLVPPPSAMARSPTTHPPANTYLPQYGGYG---------AGQSVFAPTKPFTGQDCANSKDCSFAYG 1003
Cdd:PRK12323  455 AAAPAAAARPaaaGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweelppefASPAPAQPDAAPAGWVAESIPDPATADP 534
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 767903789 1004 SGNSLPASPSSAHSAGYAPPPTGGPCLPPSKASFFSSSEGAPFSGSAPT 1052
Cdd:PRK12323  535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
PHA03247 PHA03247
large tegument protein UL36; Provisional
861-1073 2.16e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 2.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767903789  861 RPESRKASGTYAGPPTSALPAQRGLATFPSRGAK--ASPVAVGSSGAGADPSFQPVLSARQtfPPGRAASYGLTPAASDC 938
Cdd:PHA03247 2651 RPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRrrAARPTVGSLTSLADPPPPPPTPEPA--PHALVSATPLPPGPAAA 2728
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767903789  939 RAAETFPKLVPPPSAMARSPTThPPANTYLPQYGGYGAGQSVFAPTKPFTG-QDCANSKDCSFAYGSGNSLPASPSSAHS 1017
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPAT-PGGPARPARPPTTAGPPAPAPPAAPAAGpPRRLTRPAVASLSESRESLPSPWDPADP 2807
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 767903789 1018 AGYAPPPTggPCLPPSKASffsSSEGAPFSGSAPT--PLRCDSRASTVSPGGYMVPKG 1073
Cdd:PHA03247 2808 PAAVLAPA--AALPPAASP---AGPLPPPTSAQPTapPPPPGPPPPSLPLGGSVAPGG 2860
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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