NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1002261944|ref|XP_015635337|]
View 

trihelix transcription factor ASR3 [Oryza sativa Japonica Group]

Protein Classification

myb/SANT-like DNA-binding domain-containing protein( domain architecture ID 10619758)

nyb/SANT (SWI3, ADA2, N-CoR and TFIIIB)-like DNA-binding domain-containing protein may bind DNA and function as a transcription factor

CATH:  1.20.58.1880
Gene Ontology:  GO:0003700|GO:0003677
PubMed:  8882580
SCOP:  4000317

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 66-151 1.41e-09

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


:

Pssm-ID: 463994  Cd Length: 84  Bit Score: 54.19  E-value: 1.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002261944  66 NWTLHETLILITA--NRLDDDRRAGVggaaaggggagspptpRSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYK 143
Cdd:pfam13837   3 KWTEEETLALIEIwgERLELRFQESK----------------KRNKKLWEEIAEKMAELGYNRSPEQCKEKWENLKKKYR 66


                  ....*...
gi 1002261944 144 KVRDYESR 151
Cdd:pfam13837  67 KEKEGNNG 74
 
Name Accession Description Interval E-value
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 66-151 1.41e-09

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 463994  Cd Length: 84  Bit Score: 54.19  E-value: 1.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002261944  66 NWTLHETLILITA--NRLDDDRRAGVggaaaggggagspptpRSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYK 143
Cdd:pfam13837   3 KWTEEETLALIEIwgERLELRFQESK----------------KRNKKLWEEIAEKMAELGYNRSPEQCKEKWENLKKKYR 66


                  ....*...
gi 1002261944 144 KVRDYESR 151
Cdd:pfam13837  67 KEKEGNNG 74
GT1 cd12203
GT1, myb-like, SANT family; GT-1, a myb-like protein, is one of the GT trihelix transcription ...
 66-146 2.81e-06

GT1, myb-like, SANT family; GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcription pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resembles the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 213402  Cd Length: 66  Bit Score: 44.58  E-value: 2.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002261944  66 NWTLHETLILItANRLDDDRRAGvggaaaggggagsppTPRSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKV 145
Cdd:cd12203     2 RWPREETLSLI-RLRREMESRFQ---------------ETKSKKALWEEIAAKMRELGYNRSAKQCKEKWENLNKYYKKV 65


                  .
gi 1002261944 146 R 146
Cdd:cd12203    66 K 66
 
Name Accession Description Interval E-value
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 66-151 1.41e-09

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 463994  Cd Length: 84  Bit Score: 54.19  E-value: 1.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002261944  66 NWTLHETLILITA--NRLDDDRRAGVggaaaggggagspptpRSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYK 143
Cdd:pfam13837   3 KWTEEETLALIEIwgERLELRFQESK----------------KRNKKLWEEIAEKMAELGYNRSPEQCKEKWENLKKKYR 66


                  ....*...
gi 1002261944 144 KVRDYESR 151
Cdd:pfam13837  67 KEKEGNNG 74
GT1 cd12203
GT1, myb-like, SANT family; GT-1, a myb-like protein, is one of the GT trihelix transcription ...
 66-146 2.81e-06

GT1, myb-like, SANT family; GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcription pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resembles the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 213402  Cd Length: 66  Bit Score: 44.58  E-value: 2.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002261944  66 NWTLHETLILItANRLDDDRRAGvggaaaggggagsppTPRSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKV 145
Cdd:cd12203     2 RWPREETLSLI-RLRREMESRFQ---------------ETKSKKALWEEIAAKMRELGYNRSAKQCKEKWENLNKYYKKV 65


                  .
gi 1002261944 146 R 146
Cdd:cd12203    66 K 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH