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Conserved domains on  [gi|1002273525|ref|XP_015641076|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF1475 super family cl06400
Protein of unknown function (DUF1475); This family consists of several hypothetical plant ...
1-235 2.55e-155

Protein of unknown function (DUF1475); This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam07343:

Pssm-ID: 399963  Cd Length: 236  Bit Score: 430.61  E-value: 2.55e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002273525   1 MAAAGSIGVYRAVFAALGALMLGTLVYTCVTDGSPFRLELLTPWLVATLIDFYVNVTAISTWVIYKEVNWISSFFWVVLL 80
Cdd:pfam07343   1 MAAAGSIGVYRAVFAALGALMLGTLVYTCVTDGSPFRLELLTPWLVATLIDFYVNVTAISTWVIYKEVNWISSFFWVVLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002273525  81 YCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQGDLSERKSSFVIIGRIIFSILGAMMAAVVIYTVITDGLPFRKDL 160
Cdd:pfam07343  81 YCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQGDLSERKSSFVIIGRIIFSILGAMMAAVVIYTVITDGLPFRKDL 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002273525 161 LTPWMAATLIDFYINVFAISVWVAHKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLLNSHNK 235
Cdd:pfam07343 161 LTPWMAATLIDFYINVFAISVWVAHKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLLNSHNK 235
 
Name Accession Description Interval E-value
DUF1475 pfam07343
Protein of unknown function (DUF1475); This family consists of several hypothetical plant ...
1-235 2.55e-155

Protein of unknown function (DUF1475); This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.


Pssm-ID: 399963  Cd Length: 236  Bit Score: 430.61  E-value: 2.55e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002273525   1 MAAAGSIGVYRAVFAALGALMLGTLVYTCVTDGSPFRLELLTPWLVATLIDFYVNVTAISTWVIYKEVNWISSFFWVVLL 80
Cdd:pfam07343   1 MAAAGSIGVYRAVFAALGALMLGTLVYTCVTDGSPFRLELLTPWLVATLIDFYVNVTAISTWVIYKEVNWISSFFWVVLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002273525  81 YCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQGDLSERKSSFVIIGRIIFSILGAMMAAVVIYTVITDGLPFRKDL 160
Cdd:pfam07343  81 YCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQGDLSERKSSFVIIGRIIFSILGAMMAAVVIYTVITDGLPFRKDL 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002273525 161 LTPWMAATLIDFYINVFAISVWVAHKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLLNSHNK 235
Cdd:pfam07343 161 LTPWMAATLIDFYINVFAISVWVAHKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLLNSHNK 235
 
Name Accession Description Interval E-value
DUF1475 pfam07343
Protein of unknown function (DUF1475); This family consists of several hypothetical plant ...
1-235 2.55e-155

Protein of unknown function (DUF1475); This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.


Pssm-ID: 399963  Cd Length: 236  Bit Score: 430.61  E-value: 2.55e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002273525   1 MAAAGSIGVYRAVFAALGALMLGTLVYTCVTDGSPFRLELLTPWLVATLIDFYVNVTAISTWVIYKEVNWISSFFWVVLL 80
Cdd:pfam07343   1 MAAAGSIGVYRAVFAALGALMLGTLVYTCVTDGSPFRLELLTPWLVATLIDFYVNVTAISTWVIYKEVNWISSFFWVVLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002273525  81 YCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQGDLSERKSSFVIIGRIIFSILGAMMAAVVIYTVITDGLPFRKDL 160
Cdd:pfam07343  81 YCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQGDLSERKSSFVIIGRIIFSILGAMMAAVVIYTVITDGLPFRKDL 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002273525 161 LTPWMAATLIDFYINVFAISVWVAHKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLLNSHNK 235
Cdd:pfam07343 161 LTPWMAATLIDFYINVFAISVWVAHKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLLNSHNK 235
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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