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Conserved domains on  [gi|1022847514|ref|XP_016273919|]
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WD repeat protein [Rhodotorula toruloides NP11]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
230-388 3.75e-09

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 59.54  E-value: 3.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGRyeLAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIRNlpsssR 309
Cdd:COG2319   164 AVTSVAFSPDGKLLASGSDDGTVRLWDLATGK--LLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLAT-----G 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 310 PPSPTLRGASASPRKLA-------------------------ELKTTQSGPAGAARKVKFSPggkriDGGLLAFTEHRNR 364
Cdd:COG2319   237 KLLRTLTGHSGSVRSVAfspdgrllasgsadgtvrlwdlatgELLRTLTGHSGGVNSVAFSP-----DGKLLASGSDDGT 311

                         170       180
                  ....*....|....*....|....
gi 1022847514 365 LHIVDARTFETYQIIDVPTSSPSA 388
Cdd:COG2319   312 VRLWDLATGKLLRTLTGHTGAVRS 335
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 564-708 3.08e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514  564 RPRRFAPATAAPDSAAVSRTL---PTASMSPFGGSTTNVSLTADEPPIRRNfsgyTPLNPNSSAPARIPTYASPPQMSTS 640
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQAspaLPAAPAPPAVPAGPATPGGPARPARPP----TTAGPPAPAPPAAPAAGPPRRLTRP 2786

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1022847514  641 PSGRIGTSSSFYYSTYVPTSYPSatfsfATSAPAPNLPITSLFAAPLAGTVGTYHA----TSAFFPLDATPG 708
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPA-----AVLAPAAALPPAASPAGPLPPPTSAQPTapppPPGPPPPSLPLG 2853
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
230-388 3.75e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 59.54  E-value: 3.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGRyeLAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIRNlpsssR 309
Cdd:COG2319   164 AVTSVAFSPDGKLLASGSDDGTVRLWDLATGK--LLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLAT-----G 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 310 PPSPTLRGASASPRKLA-------------------------ELKTTQSGPAGAARKVKFSPggkriDGGLLAFTEHRNR 364
Cdd:COG2319   237 KLLRTLTGHSGSVRSVAfspdgrllasgsadgtvrlwdlatgELLRTLTGHSGGVNSVAFSP-----DGKLLASGSDDGT 311

                         170       180
                  ....*....|....*....|....
gi 1022847514 365 LHIVDARTFETYQIIDVPTSSPSA 388
Cdd:COG2319   312 VRLWDLATGKLLRTLTGHTGAVRS 335
DUF2415 pfam10313
Uncharacterized protein domain (DUF2415); This is a short, 30 residue domain, from a family of ...
 337-380 1.68e-07

Uncharacterized protein domain (DUF2415); This is a short, 30 residue domain, from a family of proteins conserved in fungi. The function is unknown. There is a characteriztic DLL sequence motif.


Pssm-ID: 402091  Cd Length: 43  Bit Score: 48.12  E-value: 1.68e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1022847514 337 GAARKVKFSPGGKRIDggLLAFTEHRNRLHIVDART-FETYQIID 380
Cdd:pfam10313   1 GAFRVCKFSPESGLND--LLVISEHVGRVHLVDLRTgFMNHQVIV 43
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 231-351 2.67e-06

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 49.64  E-value: 2.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 231 VNHCSVSRDGKYMVAVGDTADVFLYDCRGGRyeLAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIRNlpsssrp 310
Cdd:cd00200   180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK--CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT------- 250

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1022847514 311 psptlrgasasprklAELKTTQSGPAGAARKVKFSPGGKRI 351
Cdd:cd00200   251 ---------------GECVQTLSGHTNSVTSLAWSPDGKRL 276
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 263-300 1.87e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 36.52  E-value: 1.87e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1022847514  263 ELAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYD 300
Cdd:smart00320   3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
PHA03247 PHA03247
large tegument protein UL36; Provisional
 564-708 3.08e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514  564 RPRRFAPATAAPDSAAVSRTL---PTASMSPFGGSTTNVSLTADEPPIRRNfsgyTPLNPNSSAPARIPTYASPPQMSTS 640
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQAspaLPAAPAPPAVPAGPATPGGPARPARPP----TTAGPPAPAPPAAPAAGPPRRLTRP 2786

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1022847514  641 PSGRIGTSSSFYYSTYVPTSYPSatfsfATSAPAPNLPITSLFAAPLAGTVGTYHA----TSAFFPLDATPG 708
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPA-----AVLAPAAALPPAASPAGPLPPPTSAQPTapppPPGPPPPSLPLG 2853
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
230-388 3.75e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 59.54  E-value: 3.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGRyeLAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIRNlpsssR 309
Cdd:COG2319   164 AVTSVAFSPDGKLLASGSDDGTVRLWDLATGK--LLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLAT-----G 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 310 PPSPTLRGASASPRKLA-------------------------ELKTTQSGPAGAARKVKFSPggkriDGGLLAFTEHRNR 364
Cdd:COG2319   237 KLLRTLTGHSGSVRSVAfspdgrllasgsadgtvrlwdlatgELLRTLTGHSGGVNSVAFSP-----DGKLLASGSDDGT 311

                         170       180
                  ....*....|....*....|....
gi 1022847514 365 LHIVDARTFETYQIIDVPTSSPSA 388
Cdd:COG2319   312 VRLWDLATGKLLRTLTGHTGAVRS 335
WD40 COG2319
WD40 repeat [General function prediction only];
230-388 1.44e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 54.53  E-value: 1.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGryELAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIrnlpsssr 309
Cdd:COG2319   248 SVRSVAFSPDGRLLASGSADGTVRLWDLATG--ELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDL-------- 317

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1022847514 310 ppsptlrgasASPRKLAELKttqsGPAGAARKVKFSPggkriDGGLLAFTEHRNRLHIVDARTFETYQIIDVPTSSPSA 388
Cdd:COG2319   318 ----------ATGKLLRTLT----GHTGAVRSVAFSP-----DGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTS 377
DUF2415 pfam10313
Uncharacterized protein domain (DUF2415); This is a short, 30 residue domain, from a family of ...
 337-380 1.68e-07

Uncharacterized protein domain (DUF2415); This is a short, 30 residue domain, from a family of proteins conserved in fungi. The function is unknown. There is a characteriztic DLL sequence motif.


Pssm-ID: 402091  Cd Length: 43  Bit Score: 48.12  E-value: 1.68e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1022847514 337 GAARKVKFSPGGKRIDggLLAFTEHRNRLHIVDART-FETYQIID 380
Cdd:pfam10313   1 GAFRVCKFSPESGLND--LLVISEHVGRVHLVDLRTgFMNHQVIV 43
WD40 COG2319
WD40 repeat [General function prediction only];
230-351 2.87e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 53.38  E-value: 2.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGRyeLAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIRNlpsssr 309
Cdd:COG2319   290 GVNSVAFSPDGKLLASGSDDGTVRLWDLATGK--LLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLAT------ 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1022847514 310 ppsptlrgasasprklAELKTTQSGPAGAARKVKFSPGGKRI 351
Cdd:COG2319   362 ----------------GELLRTLTGHTGAVTSVAFSPDGRTL 387
WD40 COG2319
WD40 repeat [General function prediction only];
230-388 5.54e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 52.61  E-value: 5.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGRyeLAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIrnlpsssr 309
Cdd:COG2319    80 AVLSVAFSPDGRLLASASADGTVRLWDLATGL--LLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL-------- 149

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1022847514 310 ppsptlrgasASPRKLAELKttqsGPAGAARKVKFSPggkriDGGLLAFTEHRNRLHIVDARTFETYQIIDVPTSSPSA 388
Cdd:COG2319   150 ----------ATGKLLRTLT----GHSGAVTSVAFSP-----DGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRS 209
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 231-351 2.67e-06

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 49.64  E-value: 2.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 231 VNHCSVSRDGKYMVAVGDTADVFLYDCRGGRyeLAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIRNlpsssrp 310
Cdd:cd00200   180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK--CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT------- 250

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1022847514 311 psptlrgasasprklAELKTTQSGPAGAARKVKFSPGGKRI 351
Cdd:cd00200   251 ---------------GECVQTLSGHTNSVTSLAWSPDGKRL 276
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 230-302 3.03e-06

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 49.64  E-value: 3.03e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGRyeLAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIR 302
Cdd:cd00200   137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 230-398 7.82e-06

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 48.49  E-value: 7.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGryELAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYDIRNlpsssr 309
Cdd:cd00200    53 PVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET------ 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514 310 ppsptlrgasasprklAELKTTQSGPAGAARKVKFSPGGKRIDGGllafteHRNR-LHIVDARTFETYQII-----DVPT 383
Cdd:cd00200   125 ----------------GKCLTTLRGHTDWVNSVAFSPDGTFVASS------SQDGtIKLWDLRTGKCVATLtghtgEVNS 182

                         170
                  ....*....|....*
gi 1022847514 384 SSPSASSYPHILSAA 398
Cdd:cd00200   183 VAFSPDGEKLLSSSS 197
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 230-300 3.08e-04

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 43.48  E-value: 3.08e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1022847514 230 AVNHCSVSRDGKYMVAVGDTADVFLYDCRGGryELAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYD 300
Cdd:cd00200   221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 263-300 1.87e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 36.52  E-value: 1.87e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1022847514  263 ELAQTFKASDDASFSTDWSDDGLTFAVASQDGFVHVYD 300
Cdd:smart00320   3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
PHA03247 PHA03247
large tegument protein UL36; Provisional
 564-708 3.08e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022847514  564 RPRRFAPATAAPDSAAVSRTL---PTASMSPFGGSTTNVSLTADEPPIRRNfsgyTPLNPNSSAPARIPTYASPPQMSTS 640
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQAspaLPAAPAPPAVPAGPATPGGPARPARPP----TTAGPPAPAPPAAPAAGPPRRLTRP 2786

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1022847514  641 PSGRIGTSSSFYYSTYVPTSYPSatfsfATSAPAPNLPITSLFAAPLAGTVGTYHA----TSAFFPLDATPG 708
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPA-----AVLAPAAALPPAASPAGPLPPPTSAQPTapppPPGPPPPSLPLG 2853
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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