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Conserved domains on  [gi|1034556322|ref|XP_016856060|]
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protein SPMIP3 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF5530 pfam17670
Family of unknown function (DUF5530); This is a family of unknown function found in Chordata.
15-163 1.23e-92

Family of unknown function (DUF5530); This is a family of unknown function found in Chordata.


:

Pssm-ID: 465448  Cd Length: 141  Bit Score: 265.52  E-value: 1.23e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034556322  15 MTAIRLREFIERRPVIPPSIFIAHQGRDVQGYYPGQLARLHFDHSAKRAPsklllfpfRPLIDLTIPPKTKYHYQPQLDQ 94
Cdd:pfam17670   1 MSAIRLREFVDRRPVIPPSLFIVHQGKDLQGYYPGQLARLHYDYSVKTPP--------RPLIDLTIPVKRKTPYQPQLDQ 72
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034556322  95 QTLIRYICLRRHSKPAEPWYKETTYRRDYSLPFYEIDWNQKLATVSLNPRPLNSLPELYCCEERSSFER 163
Cdd:pfam17670  73 QTLIRYICFRRHSKPAELWYKETTYQRDYSLPFYKIDWDQKLATISLNPGPLNSLPELYCCEERSSWER 141
 
Name Accession Description Interval E-value
DUF5530 pfam17670
Family of unknown function (DUF5530); This is a family of unknown function found in Chordata.
15-163 1.23e-92

Family of unknown function (DUF5530); This is a family of unknown function found in Chordata.


Pssm-ID: 465448  Cd Length: 141  Bit Score: 265.52  E-value: 1.23e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034556322  15 MTAIRLREFIERRPVIPPSIFIAHQGRDVQGYYPGQLARLHFDHSAKRAPsklllfpfRPLIDLTIPPKTKYHYQPQLDQ 94
Cdd:pfam17670   1 MSAIRLREFVDRRPVIPPSLFIVHQGKDLQGYYPGQLARLHYDYSVKTPP--------RPLIDLTIPVKRKTPYQPQLDQ 72
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034556322  95 QTLIRYICLRRHSKPAEPWYKETTYRRDYSLPFYEIDWNQKLATVSLNPRPLNSLPELYCCEERSSFER 163
Cdd:pfam17670  73 QTLIRYICFRRHSKPAELWYKETTYQRDYSLPFYKIDWDQKLATISLNPGPLNSLPELYCCEERSSWER 141
 
Name Accession Description Interval E-value
DUF5530 pfam17670
Family of unknown function (DUF5530); This is a family of unknown function found in Chordata.
15-163 1.23e-92

Family of unknown function (DUF5530); This is a family of unknown function found in Chordata.


Pssm-ID: 465448  Cd Length: 141  Bit Score: 265.52  E-value: 1.23e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034556322  15 MTAIRLREFIERRPVIPPSIFIAHQGRDVQGYYPGQLARLHFDHSAKRAPsklllfpfRPLIDLTIPPKTKYHYQPQLDQ 94
Cdd:pfam17670   1 MSAIRLREFVDRRPVIPPSLFIVHQGKDLQGYYPGQLARLHYDYSVKTPP--------RPLIDLTIPVKRKTPYQPQLDQ 72
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034556322  95 QTLIRYICLRRHSKPAEPWYKETTYRRDYSLPFYEIDWNQKLATVSLNPRPLNSLPELYCCEERSSFER 163
Cdd:pfam17670  73 QTLIRYICFRRHSKPAELWYKETTYQRDYSLPFYKIDWDQKLATISLNPGPLNSLPELYCCEERSSWER 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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