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Conserved domains on  [gi|1034557334|ref|XP_016856386|]
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single-stranded DNA-binding protein 3 isoform X1 [Homo sapiens]

Protein Classification

SSDP domain-containing protein( domain architecture ID 12053380)

SSDP domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SSDP pfam04503
Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA ...
1-255 3.66e-61

Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA binding proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.


:

Pssm-ID: 461334 [Multi-domain]  Cd Length: 293  Bit Score: 195.18  E-value: 3.66e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   1 MPGGPIPPGFFQGPPG---SQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPP--GGVPGTQPLLPNSM 75
Cdd:pfam04503  34 MPGGPMPPGFFQSPPShpsSQPSPHAQPPPHNPATMMGPHSQPFMGPRYPGGPRPSVRMPQQGNdfNGPPGQQPMMPNSM 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334  76 DPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMR-PPPNSLGP--AMPGINMGPGAGRPWPNPNSANSIPYSSSS 152
Cdd:pfam04503 114 DPTRPGGHPNMGGPMQRMNPPRGPGMGPMGPQSYGPGMRgPPPNSTDGpgGMPPMNMGPGGRRPWPQPNASNPLPYSSSS 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334 153 PGT-YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDgPMGGMGGMEPHHMNGSLGSGDID 231
Cdd:pfam04503 194 PGSyGGPPGGGGPPGPTPIMPSPQDSTNSGENMYTLMNPVGPGGNRANFPMGPGLE-GPMGPNGMEPHHSNGSLGSGDMD 272
                         250       260
                  ....*....|....*....|....
gi 1034557334 232 GLpKNSPNNIsgISNPPGTPRDDG 255
Cdd:pfam04503 273 GM-KNSPANV--LSNGPGTPREDG 293
 
Name Accession Description Interval E-value
SSDP pfam04503
Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA ...
1-255 3.66e-61

Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA binding proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.


Pssm-ID: 461334 [Multi-domain]  Cd Length: 293  Bit Score: 195.18  E-value: 3.66e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   1 MPGGPIPPGFFQGPPG---SQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPP--GGVPGTQPLLPNSM 75
Cdd:pfam04503  34 MPGGPMPPGFFQSPPShpsSQPSPHAQPPPHNPATMMGPHSQPFMGPRYPGGPRPSVRMPQQGNdfNGPPGQQPMMPNSM 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334  76 DPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMR-PPPNSLGP--AMPGINMGPGAGRPWPNPNSANSIPYSSSS 152
Cdd:pfam04503 114 DPTRPGGHPNMGGPMQRMNPPRGPGMGPMGPQSYGPGMRgPPPNSTDGpgGMPPMNMGPGGRRPWPQPNASNPLPYSSSS 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334 153 PGT-YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDgPMGGMGGMEPHHMNGSLGSGDID 231
Cdd:pfam04503 194 PGSyGGPPGGGGPPGPTPIMPSPQDSTNSGENMYTLMNPVGPGGNRANFPMGPGLE-GPMGPNGMEPHHSNGSLGSGDMD 272
                         250       260
                  ....*....|....*....|....
gi 1034557334 232 GLpKNSPNNIsgISNPPGTPRDDG 255
Cdd:pfam04503 273 GM-KNSPANV--LSNGPGTPREDG 293
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
41-145 1.61e-06

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 49.03  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334  41 FMSPRyAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP---NMGGSMQRMNPPRGMGPMGPGPQNYGSGMR--- 114
Cdd:TIGR01628 375 FMQLQ-PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPrmsMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAqna 453
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1034557334 115 PPPNSLGP--AMPGINMGPgAGRPWPNPNSANS 145
Cdd:TIGR01628 454 AQKPPMQPvmYPPNYQSLP-LSQDLPQPQSTAS 485
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
2-145 2.29e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 2.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   2 PGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPH-------SQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNS 74
Cdd:PRK07764  621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHvavpdasDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034557334  75 MDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANS 145
Cdd:PRK07764  701 PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA 771
 
Name Accession Description Interval E-value
SSDP pfam04503
Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA ...
1-255 3.66e-61

Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA binding proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.


Pssm-ID: 461334 [Multi-domain]  Cd Length: 293  Bit Score: 195.18  E-value: 3.66e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   1 MPGGPIPPGFFQGPPG---SQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPP--GGVPGTQPLLPNSM 75
Cdd:pfam04503  34 MPGGPMPPGFFQSPPShpsSQPSPHAQPPPHNPATMMGPHSQPFMGPRYPGGPRPSVRMPQQGNdfNGPPGQQPMMPNSM 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334  76 DPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMR-PPPNSLGP--AMPGINMGPGAGRPWPNPNSANSIPYSSSS 152
Cdd:pfam04503 114 DPTRPGGHPNMGGPMQRMNPPRGPGMGPMGPQSYGPGMRgPPPNSTDGpgGMPPMNMGPGGRRPWPQPNASNPLPYSSSS 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334 153 PGT-YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDgPMGGMGGMEPHHMNGSLGSGDID 231
Cdd:pfam04503 194 PGSyGGPPGGGGPPGPTPIMPSPQDSTNSGENMYTLMNPVGPGGNRANFPMGPGLE-GPMGPNGMEPHHSNGSLGSGDMD 272
                         250       260
                  ....*....|....*....|....
gi 1034557334 232 GLpKNSPNNIsgISNPPGTPRDDG 255
Cdd:pfam04503 273 GM-KNSPANV--LSNGPGTPREDG 293
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
5-138 7.21e-08

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 53.12  E-value: 7.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   5 PIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPrPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 84
Cdd:pfam09770 216 PAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGH-PVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPP 294
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1034557334  85 NMGGSMQRM-NPPRGMGPMGPGPQNygsgmRPPPNSLGPAMPGINMGPGAGRPWP 138
Cdd:pfam09770 295 VPVQPTQILqNPNRLSAARVGYPQN-----PQPGVQPAPAHQAHRQQGSFGRQAP 344
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
41-145 1.61e-06

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 49.03  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334  41 FMSPRyAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP---NMGGSMQRMNPPRGMGPMGPGPQNYGSGMR--- 114
Cdd:TIGR01628 375 FMQLQ-PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPrmsMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAqna 453
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1034557334 115 PPPNSLGP--AMPGINMGPgAGRPWPNPNSANS 145
Cdd:TIGR01628 454 AQKPPMQPvmYPPNYQSLP-LSQDLPQPQSTAS 485
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
2-145 2.29e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 2.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   2 PGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPH-------SQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNS 74
Cdd:PRK07764  621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHvavpdasDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034557334  75 MDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANS 145
Cdd:PRK07764  701 PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA 771
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
1-106 1.05e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.18  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   1 MPGGPIPPGFFQGPPGSQPSPHAQPPPH---NPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL-LPNSMD 76
Cdd:TIGR01628 385 LPMGSPMGGAMGQPPYYGQGPQQQFNGQplgWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPpMQPVMY 464
                          90       100       110
                  ....*....|....*....|....*....|
gi 1034557334  77 PTRQQGHPnmgGSMQRMNPPRGMGPMGPGP 106
Cdd:TIGR01628 465 PPNYQSLP---LSQDLPQPQSTASQGGQNK 491
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
5-123 2.81e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 38.86  E-value: 2.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   5 PIPPGFFQGPPGSQPSPHAQPPPHNPSSMM-GPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQpLLPNsmdPTRQQgh 83
Cdd:pfam09770 237 PPQIQQQQQPQQQPQQPQQHPGQGHPVTILqRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQ-ILQN---PNRLS-- 310
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1034557334  84 PNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPA 123
Cdd:pfam09770 311 AARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPIITHPQ 350
PHA03247 PHA03247
large tegument protein UL36; Provisional
7-175 4.83e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 4.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334    7 PPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVpgtqpllPNSMDPTRQQGHPNM 86
Cdd:PHA03247  2604 DRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRV-------SRPRRARRLGRAAQA 2676
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034557334   87 GGSMQRMNPPRGMGPMGP-----GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPG 161
Cdd:PHA03247  2677 SSPPQRPRRRAARPTVGSltslaDPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR 2756
                          170
                   ....*....|....
gi 1034557334  162 GGGPPGTPIMPSPA 175
Cdd:PHA03247  2757 PARPPTTAGPPAPA 2770
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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