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Conserved domains on  [gi|1034559328|ref|XP_016857002|]
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spermatogenesis-associated protein 6 isoform X9 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SPATA6 super family cl20796
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
1-41 1.51e-11

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


The actual alignment was detected with superfamily member pfam14909:

Pssm-ID: 464365  Cd Length: 139  Bit Score: 61.47  E-value: 1.51e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1034559328   1 MFPGPNQMSGHHDSNRQVTMRRISGLRGNAPRLEFSTTSVI 41
Cdd:pfam14909  99 LFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
1-41 1.51e-11

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


Pssm-ID: 464365  Cd Length: 139  Bit Score: 61.47  E-value: 1.51e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1034559328   1 MFPGPNQMSGHHDSNRQVTMRRISGLRGNAPRLEFSTTSVI 41
Cdd:pfam14909  99 LFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
1-41 1.51e-11

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


Pssm-ID: 464365  Cd Length: 139  Bit Score: 61.47  E-value: 1.51e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1034559328   1 MFPGPNQMSGHHDSNRQVTMRRISGLRGNAPRLEFSTTSVI 41
Cdd:pfam14909  99 LFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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