|
Name |
Accession |
Description |
Interval |
E-value |
| TBC |
smart00164 |
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ... |
2-187 |
2.42e-73 |
|
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Pssm-ID: 214540 [Multi-domain] Cd Length: 216 Bit Score: 236.82 E-value: 2.42e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 2 PIKDQYSELLKMTSPCEKL----IRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQM 77
Cdd:smart00164 27 ADKDLYSRLLKETAPDDKSivhqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 78 P-EEEAFCVFVKLMQDYRLReLFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIA 156
Cdd:smart00164 107 EdEEDAFWCLVKLMERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIV 185
|
170 180 190
....*....|....*....|....*....|.
gi 1034561704 157 TRIFDIFMSEGLEIVFRVGLALLQMNQAELM 187
Cdd:smart00164 186 LRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
|
|
| RabGAP-TBC |
pfam00566 |
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ... |
19-187 |
3.91e-56 |
|
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.
Pssm-ID: 459855 Cd Length: 178 Bit Score: 189.39 E-value: 3.91e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 19 KLIRRDIARTYPEHNFFKEKDslGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQ-MPEEEAFCVFVKLMQDYRLRE 97
Cdd:pfam00566 10 EQIEKDVPRTFPHSFFFDNGP--GQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVyLDEEDAFWCFVSLLENYLLRD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 98 LFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIV-FRVGL 176
Cdd:pfam00566 88 FYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVlFRVAL 167
|
170
....*....|.
gi 1034561704 177 ALLQMNQAELM 187
Cdd:pfam00566 168 AILKRFREELL 178
|
|
| COG5210 |
COG5210 |
GTPase-activating protein [General function prediction only]; |
4-196 |
3.20e-39 |
|
GTPase-activating protein [General function prediction only];
Pssm-ID: 227535 [Multi-domain] Cd Length: 496 Bit Score: 151.88 E-value: 3.20e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 4 KDQYSELLKM-------TSPCEKLIRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQ 76
Cdd:COG5210 236 PGLYERLLNLhreakipTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLV 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 77 MPEEE-AFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPI 155
Cdd:COG5210 316 LESEEqAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEY 395
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1034561704 156 ATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQ 196
Cdd:COG5210 396 ALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLD 436
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
225-544 |
1.05e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQS 304
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 305 DEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIA 384
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELA--------------EAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL--AAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 385 RLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwqrhlarttgrwkdppkknAMNELQDELMTIRLREAETQAEIREIKQ 464
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEE--------------------EEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 465 RMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELR 544
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
243-556 |
1.02e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 243 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQvtraqeaEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQ 322
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELE-------EELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 323 HQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKLREAEAIM 402
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL--REALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 403 GLKELRQQVKDleehWQRHLARTTGRWKDppKKNAMNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRR 482
Cdd:TIGR02168 825 RLESLERRIAA----TERRLEDLEEQIEE--LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 483 AEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECK---NKEEVMAVRLREADSIAA--------VAELRQHIAELE 551
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRidnLQERLSEEYSLTLEEAEAlenkieddEEEARRRLKRLE 978
|
....*
gi 1034561704 552 IQKEE 556
Cdd:TIGR02168 979 NKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
221-593 |
3.22e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 3.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 221 KYNSKK---MKKLEKeyttikTKEMEEQVEIkrLRTEnrlLKQRIETLEKEsaslADRLIQGQVTRAQEAE-ENYLIKRE 296
Cdd:COG1196 169 KYKERKeeaERKLEA------TEENLERLED--ILGE---LERQLEPLERQ----AEKAERYRELKEELKElEAELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 297 LATIKQQSDEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNS 376
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELA--------------ELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 377 LpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwqrhlarttgrwkdppkknAMNELQDELMTIRLREAETQ 456
Cdd:COG1196 300 L--EQDIARLEERRRELEERLEELEEELAELEEELEELEE--------------------ELEELEEELEEAEEELEEAE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 457 AEIREIKQRmmemetqnqinsnhLRRAEQEVISLQEKvqyLSAQNKGLLTQLSEAKRKQAEIEckNKEEVMAVRLREADS 536
Cdd:COG1196 358 AELAEAEEA--------------LLEAEAELAEAEEE---LEELAEELLEALRAAAELAAQLE--ELEEAEEALLERLER 418
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1034561704 537 I-AAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGELGREGR 593
Cdd:COG1196 419 LeEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
271-512 |
9.29e-10 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 61.96 E-value: 9.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 271 SLADRLIQGQVTRAQEAEENYL--IKRELATIKQQSDEASAKLE--QAENTIRKLQHQQQwhkcssnYNEDFVLQLEKEL 346
Cdd:COG3206 156 ALAEAYLEQNLELRREEARKALefLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAK-------LLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 347 VQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGL-------KELRQQVKDLEEHWQ 419
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYtpnhpdvIALRAQIAALRAQLQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 420 RHLARttgrwkdppkknAMNELQDELMTIRLREAETQAEIREIKQRMMEmetqnqinsnhLRRAEQEVISLQEKVQYLSA 499
Cdd:COG3206 309 QEAQR------------ILASLEAELEALQAREASLQAQLAQLEARLAE-----------LPELEAELRRLEREVEVARE 365
|
250
....*....|...
gi 1034561704 500 QNKGLLTQLSEAK 512
Cdd:COG3206 366 LYESLLQRLEEAR 378
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-581 |
1.28e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEY-TTIKTKEMEEQVEIKRLRtenrLLKQRIETLEKESASLadrliQGQVTRAQEAEENylIKRELATIKQQ 303
Cdd:TIGR02168 200 RQLKSLERQAeKAERYKELKAELRELELA----LLVLRLEELREELEEL-----QEELKEAEEELEE--LTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 304 SDEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlqlekeLVQARLSEAESQcalKEMQDkvldiEKRNNSlpdENNI 383
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELY-------------------ALANEISRLEQQ---KQILR-----ERLANL---ERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 384 ARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRhlarttgrwkdppKKNAMNELQDELMTIRLREAETQAEIREIK 463
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELES-------------LEAELEELEAELEELESRLEELEEQLETLR 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 464 QRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMA-VRLREADSIAAVAE 542
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEeLQEELERLEEALEE 465
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1034561704 543 LRQHIAELE--IQKEEGKLQGQLNKSDSNQYIGELKDQIAE 581
Cdd:TIGR02168 466 LREELEEAEqaLDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
371-585 |
2.16e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 2.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 371 EKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwQRHLARTTGRWKDPPKKNAMNELQDELMTIRL 450
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE--ELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 451 RE---AETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIecknKEEVM 527
Cdd:TIGR02168 745 LEeriAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL----NEEAA 820
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1034561704 528 AVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLNksdsNQYIGELKDQIAELNHE 585
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESL----AAEIEELEELIEELESE 874
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
219-583 |
5.49e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 5.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 219 QVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELA 298
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 299 TIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEdfvlqLEKELVQARLSEAESQCA-----LKEMQDKVLDIEKR 373
Cdd:PRK02224 423 ELREREAELEATLRTARERVEEAEALLEAGKCPECGQP-----VEGSPHVETIEEDRERVEeleaeLEDLEEEVEEVEER 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 374 NNSLPD----ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGrwkdppKKNAMNELQDELMTIR 449
Cdd:PRK02224 498 LERAEDlveaEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE------KREAAAEAEEEAEEAR 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 450 LREAETQAEIREIKQRMMEMETQNQINSNhLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEevmav 529
Cdd:PRK02224 572 EEVAELNSKLAELKERIESLERIRTLLAA-IADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE----- 645
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561704 530 rlreadsiAAVAELRQHIAELE--IQKEEGKLQGQLNKSDSNQ-YIGELKDQIAELN 583
Cdd:PRK02224 646 --------ARIEEAREDKERAEeyLEQVEEKLDELREERDDLQaEIGAVENELEELE 694
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
224-526 |
1.50e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 224 SKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQ 303
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 304 SDEASAKLEQAENTIRKLQHQqqwhkcssnynedfVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPDENNi 383
Cdd:TIGR02169 760 LKELEARIEELEEDLHKLEEA--------------LNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLREIEQKLN- 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 384 ARLQEELIAVKLREaeaimglkELRQQVKDLEEhwqrhlarttgrwkdppkKNAMNELQDELMTIRLRE-----AETQAE 458
Cdd:TIGR02169 823 RLTLEKEYLEKEIQ--------ELQEQRIDLKE------------------QIKSIEKEIENLNGKKEEleeelEELEAA 876
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034561704 459 IREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEV 526
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
212-587 |
1.81e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 212 KLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASL--ADRLIQG--QVTRAQEA 287
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKkkADEAKKKaeEKKKADEA 1436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 288 EENYLIKRELATIKQQSDEAsaklEQAENTIRKLQHQQQWHkcssnynedfvlQLEKELVQARLSEaESQCALKEMQDKV 367
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEA----KKAEEAKKKAEEAKKAD------------EAKKKAEEAKKAD-EAKKKAEEAKKKA 1499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 368 LDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKELR--QQVKDLEEHWQRHLARTTGRWKDPPKKNAMNElqDEL 445
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAEEAKKAEE--DKN 1577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 446 MTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEE 525
Cdd:PTZ00121 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561704 526 VMAVRlreADSIAAVAELRQHIAElEIQKEE----GKLQGQLNKSDSNQYIGELKDQIAELNHEGE 587
Cdd:PTZ00121 1658 ENKIK---AAEEAKKAEEDKKKAE-EAKKAEedekKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
229-560 |
3.60e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 229 KLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQ--EAEENYLIKR---ELATIKQQ 303
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREltEEHRKELLEEytaELKRIEKE 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 304 SDEASAKLEQAENTIRKLQHQQQWHKCSSNYNE--DFVLQLEKELVQARLSEAESQCA-LKEMQDKVLDIEKRNNSLPDE 380
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELEKKAEeYEKLKEKLIKLKGEIKSLKKE 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 381 -NNIARLQEELIAV--KLREAEAIMG-------------LKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNELQDE 444
Cdd:PRK03918 548 lEKLEELKKKLAELekKLDELEEELAellkeleelgfesVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 445 LMTIRLREAETQAEIREIKQRMMEMEtqNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEcKNKE 524
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELE--KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK-EELE 704
|
330 340 350
....*....|....*....|....*....|....*....
gi 1034561704 525 EVMAVRLREAD---SIAAVAELRQHIAELEIQKEEGKLQ 560
Cdd:PRK03918 705 EREKAKKELEKlekALERVEELREKVKKYKALLKERALS 743
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
243-465 |
8.66e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 8.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 243 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEaeenylikrELATIKQQSDEASAKLEQAENTIRKLQ 322
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA---------ELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 323 HQQQwhkcSSNYNEdfVLQLEKELVQARLSEAESqcalkemqdkvldiekrnnslpdENNIARLQEELIAVKLREAEAIM 402
Cdd:COG4913 330 AQIR----GNGGDR--LEQLEREIERLERELEER-----------------------ERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034561704 403 GLKELRQQVKDLEEHWQRHLARTTgrwkdppkkNAMNELQDELMTIRLREAETQAEIREIKQR 465
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALE---------EALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
180-554 |
1.20e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 180 QMNQAELMQLDMEGMLQHFQKVIphqfdgvpdkliqaayqVKYNSKKMKKLEKE--YTTIKTKEMEEQVE--IKRLRTEN 255
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSIL-----------------VDFEEASGKKIYEHdsMSTMHFRSLGSAISkiLRELDTEI 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 256 RLLKQRI-------ETLEKESASLADRLIQGQVTRAQEaeenyLIKRELATIKQQSDEASAKLEQAeNTIRKlqhqqqwh 328
Cdd:pfam15921 234 SYLKGRIfpvedqlEALKSESQNKIELLLQQHQDRIEQ-----LISEHEVEITGLTEKASSARSQA-NSIQS-------- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 329 kcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKV--LDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKE 406
Cdd:pfam15921 300 ------------QLEIIQEQARNQNSMYMRQLSDLESTVsqLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQ 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 407 LRQQVKDLEEHWQRHLArttgrwkdppkknamnelqdelmTIRLREAETQAEiREIKQRMMEMETQNQINSNHLRRaeqE 486
Cdd:pfam15921 368 FSQESGNLDDQLQKLLA-----------------------DLHKREKELSLE-KEQNKRLWDRDTGNSITIDHLRR---E 420
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034561704 487 VISLQEKVQYLSAQNKGLLTQLS-EAKRKQAEIECKNKEevmavrLREADSIAAVAE-----LRQHIAELEIQK 554
Cdd:pfam15921 421 LDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNES------LEKVSSLTAQLEstkemLRKVVEELTAKK 488
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
225-585 |
1.41e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKEsASLADRLIQGQVTRAQEAEENYLIKRELATIKQQS 304
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 305 dEASAKLEQAENTIRKLQHQ-QQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENNI 383
Cdd:COG4717 160 -ELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 384 ARLQEEL--IAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTG-----RWKDPPKKNAMNELQDELMTIRLREAETQ 456
Cdd:COG4717 239 AALEERLkeARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGllallFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 457 AEIREIKQR-MMEMETQNQINSNHLRRAEQevisLQEKVQYLSAQNKGLLTQLSEAKRKQ--AEIECKNKEEVMAVRLRE 533
Cdd:COG4717 319 EELEELLAAlGLPPDLSPEELLELLDRIEE----LQELLREAEELEEELQLEELEQEIAAllAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1034561704 534 ADSIAAVAELRQHIAELE-IQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHE 585
Cdd:COG4717 395 EEYQELKEELEELEEQLEeLLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
294-587 |
3.57e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 294 KRELATIKQQSDEASAKLEQAENTIRKLQHQQqwhkcssnynedfvLQLEK-ELVQARLSEAESQCALKEMQDKVLDIEK 372
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRRER--------------EKAERyQALLKEKREYEGYELLKEKEALERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 373 RNNSLPD-ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwqrhlarttgrwkdppkkNAMNELQDELMTIRLR 451
Cdd:TIGR02169 242 IERQLASlEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE-------------------EEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 452 EAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRL 531
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034561704 532 READSIAAVAELRQHIAEL-EIQKEEGKLQGQLNK-----SDSNQYIGELKDQIAELNHEGE 587
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREInELKRELDRLQEELQRlseelADLNAAIAGIEAKINELEEEKE 444
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
215-413 |
4.42e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 4.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 215 QAAYQVKYNSKK--MKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYL 292
Cdd:TIGR02169 324 LAKLEAEIDKLLaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 293 IKRELATIKQQSDEASAKLEQAENTIRKLQHQQqwhkcssnyNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEK 372
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKI---------NE---LEEEKEDKALEIKKQEWK--LEQLAADLSKYEQ 469
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1034561704 373 RNNSLpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKD 413
Cdd:TIGR02169 470 ELYDL--KEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
259-465 |
5.23e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 5.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 259 KQRIETLEKESASLADRL--IQGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQwhKCSSNYNE 336
Cdd:COG4913 609 RAKLAALEAELAELEEELaeAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELE--RLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 337 dfVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRnnslpdennIARLQEELIAVKLREAEAIMGLKElrQQVKDLEE 416
Cdd:COG4913 687 --LAALEEQLEELEAELEELEEELDELKGEIGRLEKE---------LEQAEEELDELQDRLEAAEDLARL--ELRALLEE 753
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1034561704 417 HWQRHLARTTGRwkdppkkNAMNELQDELMTIRLREAETQAEIREIKQR 465
Cdd:COG4913 754 RFAAALGDAVER-------ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
382-597 |
5.27e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 5.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 382 NIARLQEELIavKLREAEAIMglKELRQQVKDLE---EHWQRHLArttgrwkdppKKNAMNELQDELMTIRLREAET--- 455
Cdd:COG4913 226 AADALVEHFD--DLERAHEAL--EDAREQIELLEpirELAERYAA----------ARERLAELEYLRAALRLWFAQRrle 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 456 --QAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEiECKNKEEVMAVRLRE 533
Cdd:COG4913 292 llEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELE-ERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034561704 534 -----ADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGELGREGRNVIP 597
Cdd:COG4913 371 lglplPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
201-556 |
7.20e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 7.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 201 VIPHQFDGVPDKLiqAAYQVKYNSKKMKKLEKEYTTIkTKEMEEQVEIKRLrTENRLLKQRIEtlekesasladrLIQGQ 280
Cdd:pfam17380 218 VAPKEVQGMPHTL--APYEKMERRKESFNLAEDVTTM-TPEYTVRYNGQTM-TENEFLNQLLH------------IVQHQ 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 281 VTRAQEAEENYLIKRELATIKQQSDEASAKLEQAentiRKLQH-----QQQWHKCSSNYNEDFVLQLEKELVQARLSEAE 355
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERR----RKLEEaekarQAEMDRQAAIYAEQERMAMERERELERIRQEE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 356 SQCALKEMQDKVLDIEkrnnsLPDENNIARLQEEliavKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKK 435
Cdd:pfam17380 358 RKRELERIRQEEIAME-----ISRMRELERLQME----RQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 436 namnelQDELMTIRLREAETQAEIREIKQRMMEMETQNQI-----NSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSE 510
Cdd:pfam17380 429 ------QEEARQREVRRLEEERAREMERVRLEEQERQQQVerlrqQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1034561704 511 AkRKQAEIECKNKEEVMAVRLREADSiAAVAELRQHIAELEIQKEE 556
Cdd:pfam17380 503 E-RKQAMIEEERKRKLLEKEMEERQK-AIYEEERRREAEEERRKQQ 546
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
385-590 |
1.17e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 385 RLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHlarttgRWKDPPKKNAMNELQDELMTIRLREAETQAEIREIKQ 464
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEEL------RLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 465 RMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEckNKEEVMAVRLREADsiAAVAELR 544
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--AELEELESRLEELE--EQLETLR 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1034561704 545 QHIAELEiqKEEGKLQGQLN-----KSDSNQYIGELKDQIAELNHEGELGR 590
Cdd:TIGR02168 386 SKVAQLE--LQIASLNNEIErlearLERLEDRRERLQQEIEELLKKLEEAE 434
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
243-593 |
1.47e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 243 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELA-------TIKQQSDEASAKLEQAE 315
Cdd:PRK02224 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeAVEARREELEDRDEELR 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 316 NTIRKLQHQQQWHKCSSNYNEDFVLQLE--------------KELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPD-- 379
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEeraeelreeaaeleSELEEAREAVEDRREEIEELEEEIEELRERFGDAPVdl 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 380 ---ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGR-WKDPPKKNAMNELQDELMTIRLREAET 455
Cdd:PRK02224 408 gnaEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQpVEGSPHVETIEEDRERVEELEAELEDL 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 456 QAEIREIKQRMMEMETqnqinsnhLRRAEQEVISLQEK----VQYLSAQNKGLltqlsEAKRKQAEIECKNKEEVMAvRL 531
Cdd:PRK02224 488 EEEVEEVEERLERAED--------LVEAEDRIERLEERredlEELIAERRETI-----EEKRERAEELRERAAELEA-EA 553
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034561704 532 READSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGELGREGR 593
Cdd:PRK02224 554 EEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
178-575 |
1.54e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.97 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 178 LLQMNQAELMQLDMEGMLQHFQKVIphqfdgvpdKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEikRLRTENRL 257
Cdd:pfam07888 23 LLVVPRAELLQNRLEECLQERAELL---------QAQEAANRQREKEKERYKRDREQWERQRRELESRVA--ELKEELRQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 258 LKQRIETLE---KESASLADRLIQGQVTRAQEAEENYLIKREL----ATIKQQSDEASAKLEQAENTIRKLQHQQQwhkc 330
Cdd:pfam07888 92 SREKHEELEekyKELSASSEELSEEKDALLAQRAAHEARIRELeediKTLTQRVLERETELERMKERAKKAGAQRK---- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 331 ssnynEDfvlQLEKELVQARL--SEAESQCALKEMQD-KVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKEL 407
Cdd:pfam07888 168 -----EE---EAERKQLQAKLqqTEEELRSLSKEFQElRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEEL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 408 R--QQVKDLEEHWQRHLAR---TTGRWKDppkknamnELQDELMTIRLREAETQAEIREIKQRMMEMETQ-NQINSNHLR 481
Cdd:pfam07888 240 RslQERLNASERKVEGLGEelsSMAAQRD--------RTQAELHQARLQAAQLTLQLADASLALREGRARwAQERETLQQ 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 482 RAEQEvislQEKVQYLSAQNKGLLTQLSEAK--RKQAEIECKNKEEVMAVRLREADSiaavaELRQHIAELEI-QKEegK 558
Cdd:pfam07888 312 SAEAD----KDRIEKLSAELQRLEERLQEERmeREKLEVELGREKDCNRVQLSESRR-----ELQELKASLRVaQKE--K 380
|
410
....*....|....*..
gi 1034561704 559 LQGQLNKSDSNQYIGEL 575
Cdd:pfam07888 381 EQLQAEKQELLEYIRQL 397
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
240-593 |
1.98e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 240 KEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQE------AEENYLIKRELATIKQQSDEASAKLEQ 313
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEeyllylDYLKLNEERIDLLQELLRDEQEEIESS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 314 AENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENN----------- 382
Cdd:pfam02463 257 KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKaekelkkekee 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 383 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNELQDELMTIRLREAETQAEIREi 462
Cdd:pfam02463 337 IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 463 KQRMMEMETQNQInsnhlrraEQEVISLQEKVQYLSAQnkglLTQLSEAKRKQAEIECKNKEEVMAVRlREADSIAAVAE 542
Cdd:pfam02463 416 QLEDLLKEEKKEE--------LEILEEEEESIELKQGK----LTEEKEELEKQELKLLKDELELKKSE-DLLKETQLVKL 482
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1034561704 543 LRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGELGREGR 593
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGD 533
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
307-568 |
2.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 307 ASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIARL 386
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIA--------------ELEKELAALKKEEKALLKQLAALERRIAALARRIRAL--EQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 387 QEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRhlarttgrwkdppkknamNELQDELMTIRLREAETQAEIREIKQRM 466
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALYR------------------LGRQPPLALLLSPEDFLDAVRRLQYLKY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 467 MEMETQNQINSnhLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELRQH 546
Cdd:COG4942 144 LAPARREQAEE--LRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
250 260
....*....|....*....|....
gi 1034561704 547 IAELE--IQKEEGKLQGQLNKSDS 568
Cdd:COG4942 222 AEELEalIARLEAEAAAAAERTPA 245
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
254-565 |
2.61e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.03 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 254 ENRL--LKQRIETLEKESASLA-------------DRLIQGQVTRAQEAEENylikRELATIKQQSDEASAKLEQAENTI 318
Cdd:PRK04863 785 EKRIeqLRAEREELAERYATLSfdvqklqrlhqafSRFIGSHLAVAFEADPE----AELRQLNRRRVELERALADHESQE 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 319 RklQHQQQWHK----CSS-NYNEDFVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPD-ENNIARLQ---EE 389
Cdd:PRK04863 861 Q--QQRSQLEQakegLSAlNRLLPRLNLLADETLADRVEEIREQ--LDEAEEAKRFVQQHGNALAQlEPIVSVLQsdpEQ 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 390 LIAVKLREAEAIMGLKELRQQVKDLEEHWQR--HLArttgrWKDPPKK-NAMNELQDELMTiRLREAETQAeiREIKQRM 466
Cdd:PRK04863 937 FEQLKQDYQQAQQTQRDAKQQAFALTEVVQRraHFS-----YEDAAEMlAKNSDLNEKLRQ-RLEQAEQER--TRAREQL 1008
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 467 MEMETQnqinsnhLRRAEQEVISLQEkvqylSAQNKglLTQLSEAKRKQAEI---ECKNKEEVMAVRLREADSIAAVAEL 543
Cdd:PRK04863 1009 RQAQAQ-------LAQYNQVLASLKS-----SYDAK--RQMLQELKQELQDLgvpADSGAEERARARRDELHARLSANRS 1074
|
330 340
....*....|....*....|..
gi 1034561704 544 RQHIAELEIQKEEGKLQGQLNK 565
Cdd:PRK04863 1075 RRNQLEKQLTFCEAEMDNLTKK 1096
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-582 |
2.87e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 228 KKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEEnyLIKRELATIKQQSDEA 307
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA--LEEAAEEEAELEEEEE 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 308 SAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEK--------------- 372
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavavligveaayeaa 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 373 ---------RNNSLPDENNIARLQEELIAVKLREAE-----AIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAM 438
Cdd:COG1196 540 leaalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 439 NELQDELM-------------TIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLL 505
Cdd:COG1196 620 DTLLGRTLvaarleaalrravTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 506 TQLSEAKRKQAEIE---CKNKEEVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAEL 582
Cdd:COG1196 700 LAEEEEERELAEAEeerLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
240-546 |
3.53e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.12 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 240 KEMEEQV---EIKRLRTENRLLKQRIETLEKE----SASLADRLIQGQVTRAQEAEENYLIKRELATIKQQSDEASAkle 312
Cdd:pfam10174 459 REREDRErleELESLKKENKDLKEKVSALQPEltekESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSK--- 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 313 qAENTIRKLQHQQQWHKCSSNYNeDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSlpDENNIARLqEELIA 392
Cdd:pfam10174 536 -LENQLKKAHNAEEAVRTNPEIN-DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKND--KDKKIAEL-ESLTL 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 393 VKLREAEAIMGLKELRQQVKDLEEHWQRHLARttgRWKDPPKKNAMNELQDELMTIRLReaeTQAEIREIKQRMMEMETQ 472
Cdd:pfam10174 611 RQMKEQNKKVANIKHGQQEMKKKGAQLLEEAR---RREDNLADNSQQLQLEELMGALEK---TRQELDATKARLSSTQQS 684
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 473 NQINSNHL------RRAEQEVIsLQEKVQYLSA------QNKGLLtQLSEAKRKqaeiecKNKEEVMAVRlREADSIaaV 540
Cdd:pfam10174 685 LAEKDGHLtnlraeRRKQLEEI-LEMKQEALLAaisekdANIALL-ELSSSKKK------KTQEEVMALK-REKDRL--V 753
|
....*.
gi 1034561704 541 AELRQH 546
Cdd:pfam10174 754 HQLKQQ 759
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
215-586 |
6.43e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 215 QAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL--------IQGQVTRAQE 286
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLnlvqtalrQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 287 AEENYLIKRE-----LATIKQQSDEASAKLEQAENTIRKLQHQQqwhkcsSNYNEDFVLQLEKEL-----VQArLSEAES 356
Cdd:PRK04863 356 DLEELEERLEeqnevVEEADEQQEENEARAEAAEEEVDELKSQL------ADYQQALDVQQTRAIqyqqaVQA-LERAKQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 357 QCAL-------------------KEMQDKVLDIEKRNNSLPDenniARLQEELIAVKLREAEAIMGLKELRQQVKDLEEH 417
Cdd:PRK04863 429 LCGLpdltadnaedwleefqakeQEATEELLSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 418 W--QRHLARTTgrwkdPPKKNAMNELQDELMtirlREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQ 495
Cdd:PRK04863 505 LreQRHLAEQL-----QQLRMRLSELEQRLR----QQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 496 YLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMA----VRLRE------ADSiAAVAELRQHIAELEIQKeegklqgQLNK 565
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAqdalARLREqsgeefEDS-QDVTEYMQQLLEREREL-------TVER 647
|
410 420
....*....|....*....|.
gi 1034561704 566 SDSNQYIGELKDQIAELNHEG 586
Cdd:PRK04863 648 DELAARKQALDEEIERLSQPG 668
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
210-416 |
8.84e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 8.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 210 PDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL----IQGQVTRAQ 285
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELaeleKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 286 EAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQD 365
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1034561704 366 KVLDIEKRNNSLpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEE 416
Cdd:COG4942 179 LLAELEEERAAL--EALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
215-478 |
1.03e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 215 QAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQgqvtraqeaeenylIK 294
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES--------------LA 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 295 RELATIKQQSDEASAKLEQAENtiRKLQHQQQWHKCSSNYNEdfvlqLEKELVQARLSEAESQCALKEMQDKVLDIEKRN 374
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLN--ERASLEEALALLRSELEE-----LSEELRELESKRSELRRELEELREKLAQLELRL 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 375 NSLpdENNIARLQEELIAVKLREAEAIMGLKELrqqVKDLEEHWQRHLARTTGRWKD--PPKKNAMNELQDElmTIRLRE 452
Cdd:TIGR02168 932 EGL--EVRIDNLQERLSEEYSLTLEEAEALENK---IEDDEEEARRRLKRLENKIKElgPVNLAAIEEYEEL--KERYDF 1004
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1034561704 453 AETQAE------------IREIKQRMME--METQNQINSN 478
Cdd:TIGR02168 1005 LTAQKEdlteaketleeaIEEIDREARErfKDTFDQVNEN 1044
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
211-585 |
1.04e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 211 DKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLL-------KQRIETLEKESASLAdrliqgqvtr 283
Cdd:TIGR04523 61 KNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKInseikndKEQKNKLEVELNKLE---------- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 284 aQEAEENyliKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCAL--- 360
Cdd:TIGR04523 131 -KQKKEN---KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnl 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 361 -------KEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKL---REAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWK 430
Cdd:TIGR04523 207 kkkiqknKSLESQISELKKQNNQL--KDNIEKKQQEINEKTTeisNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 431 DppKKNAMNELQDELMTIRLREA-----ETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLL 505
Cdd:TIGR04523 285 E--LEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 506 TQLSEaKRKQAEIECKNKEEVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHE 585
Cdd:TIGR04523 363 RELEE-KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
354-547 |
1.33e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 354 AESQCALKEMQD---KVLDIEKRNNSLPDEnnIARLQEELIAVKLREAEAIMGLKELRQQVKDLE---EHWQRHLARTTG 427
Cdd:COG1579 3 PEDLRALLDLQEldsELDRLEHRLKELPAE--LAELEDELAALEARLEAAKTELEDLEKEIKRLEleiEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 428 RWKDPPKKNAMNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEvisLQEKVQYLSAQNKGLLTQ 507
Cdd:COG1579 81 QLGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAE---LEEKKAELDEELAELEAE 157
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1034561704 508 LSEAKRKQAEIECKNKEEVMAV--RLREADSIAAVAELRQHI 547
Cdd:COG1579 158 LEELEAEREELAAKIPPELLALyeRIRKRKNGLAVVPVEGGA 199
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
258-475 |
1.52e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 258 LKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNED 337
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 338 FvlqLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPD-ENNIARLQEELiaVKLREAEAIMGLKELRQQVKDLEE 416
Cdd:COG4717 131 Y---QELEALEAELAELPER--LEELEERLEELRELEEELEElEAELAELQEEL--EELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034561704 417 HWQRhlarttgrwkdppkknaMNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQI 475
Cdd:COG4717 204 LQQR-----------------LAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
404-595 |
1.70e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 404 LKELRQQVKDLEEHWQRHlarttgrwkdppkknamNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNH--LR 481
Cdd:COG4717 73 LKELEEELKEAEEKEEEY-----------------AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYqeLE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 482 RAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEevmAVRLREADSIAAVAELRQHIAELE-IQKEEGKLQ 560
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEE---LEELLEQLSLATEEELQDLAEELEeLQQRLAELE 212
|
170 180 190
....*....|....*....|....*....|....*
gi 1034561704 561 GQLNKSDsnQYIGELKDQIAELNHEGELGREGRNV 595
Cdd:COG4717 213 EELEEAQ--EELEELEEELEQLENELEAAALEERL 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
225-556 |
2.08e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEYTTIKtkemEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENY-LIKRELATIKQQ 303
Cdd:COG4717 146 ERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLaELEEELEEAQEE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 304 SDEASAKLEQAENTIRKLQHQQQWHKCSSNYN-----------------------------------EDFVLQLEKELVQ 348
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLiaaallallglggsllsliltiagvlflvlgllalLFLLLAREKASLG 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 349 ARLSEAESQCALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKlreaeaimGLKELRQQVKDLEEHWQRHLARTTgr 428
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE--------ELQELLREAEELEEELQLEELEQE-- 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 429 wkdppKKNAMNELQDELMTIRLREAETQAEIREIKQRMMEMETQ--NQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLT 506
Cdd:COG4717 372 -----IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQleELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1034561704 507 QLSEAKRKQAEIEcknkeevmaVRLREADSIAAVAELRQHIAELEIQKEE 556
Cdd:COG4717 447 ELEELREELAELE---------AELEQLEEDGELAELLQELEELKAELRE 487
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
247-416 |
2.31e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 247 EIKRLRTENRLLKQRIETLEKESASLADRLIQgqvtraqeaeenylIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQ 326
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEA--------------AKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 327 whkcSSNYNEDFV-LQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKlREAEAImgLK 405
Cdd:COG1579 84 ----NVRNNKEYEaLQKEIESLKRRISDLEDE--ILELMERIEELEEELAEL--EAELAELEAELEEKK-AELDEE--LA 152
|
170
....*....|.
gi 1034561704 406 ELRQQVKDLEE 416
Cdd:COG1579 153 ELEAELEELEA 163
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
383-583 |
2.54e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 383 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKD---PPKKNAMNELQDE----------LMTIR 449
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidvASAEREIAELEAElerldassddLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 450 LREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEC--------- 520
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAverelrenl 771
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 521 ----------KNKEEVMAVRLREA-------------DSIAAVAELRQHIAELE----IQKEEgKLQGQLNKSdSNQYIG 573
Cdd:COG4913 772 eeridalrarLNRAEEELERAMRAfnrewpaetadldADLESLPEYLALLDRLEedglPEYEE-RFKELLNEN-SIEFVA 849
|
250 260
....*....|....*....|.
gi 1034561704 574 EL-----------KDQIAELN 583
Cdd:COG4913 850 DLlsklrraireiKERIDPLN 870
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
212-585 |
2.88e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 212 KLIQAAYQVKynsKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKesasLADRLIQGQVTRAQEAEENY 291
Cdd:PRK03918 183 KFIKRTENIE---ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 292 LIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEdFVLQLEKEL--VQARLSEAESQcaLKEMQDKVLD 369
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE-FYEEYLDELreIEKRLSRLEEE--INGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 370 IEKRNNSLpdeNNIARLQEELiavkLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDppkknamnELQDELMTIR 449
Cdd:PRK03918 333 LEEKEERL---EELKKKLKEL----EKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE--------KLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 450 LREAETQAEIREIKQRMMEMETQnqinsnhlrraeqevislqekvqylSAQNKGLLTQLSEAKRK----QAEIECKNKEE 525
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKE-------------------------IKELKKAIEELKKAKGKcpvcGRELTEEHRKE 452
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034561704 526 VMAVRLREADSIAA-VAELRQHIAELEiqKEEGKLQGQLNKSDSNQYIGELKDQIAELNHE 585
Cdd:PRK03918 453 LLEEYTAELKRIEKeLKEIEEKERKLR--KELRELEKVLKKESELIKLKELAEQLKELEEK 511
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
248-560 |
3.11e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 248 IKRLR--TENRLLKQRIETLEKESASLADRLiqgQVTRAQEAEenylIKRELATIKQQSDEASAKLEQAENTIRKLQHQQ 325
Cdd:PRK02224 178 VERVLsdQRGSLDQLKAQIEEKEEKDLHERL---NGLESELAE----LDEEIERYEEQREQARETRDEADEVLEEHEERR 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 326 QwhkcssnynEDFVLQLEKELVQARLSEAESQC-----ALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKL----- 395
Cdd:PRK02224 251 E---------ELETLEAEIEDLRETIAETEREReelaeEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARReeled 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 396 REAEAIMGLKELRQQVKDLEEHWQRHLARTT---GRWKDppKKNAMNELQDELMTIR--LREAETQ-----AEIREIKQR 465
Cdd:PRK02224 322 RDEELRDRLEECRVAAQAHNEEAESLREDADdleERAEE--LREEAAELESELEEAReaVEDRREEieeleEEIEELRER 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 466 MMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEvmavRLREADSIAAVAELRQ 545
Cdd:PRK02224 400 FGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQ----PVEGSPHVETIEEDRE 475
|
330
....*....|....*
gi 1034561704 546 HIAELEIQKEEGKLQ 560
Cdd:PRK02224 476 RVEELEAELEDLEEE 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
383-597 |
4.16e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 383 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEehwqrhlarttgrwKDPPKKNAMNELQDElmtirLREAETQAEIREI 462
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLR--------------REREKAERYQALLKE-----KREYEGYELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 463 KqrmmEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKqaeIECKNKEEVMAVRLREADSIAAVAE 542
Cdd:TIGR02169 233 E----ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK---IKDLGEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034561704 543 LRQHIAELEIQKEEgkLQGQLNKSDSNqyIGELKDQIAELnhEGELGREGRNVIP 597
Cdd:TIGR02169 306 LERSIAEKERELED--AEERLAKLEAE--IDKLLAEIEEL--EREIEEERKRRDK 354
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
231-325 |
5.73e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 5.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 231 EKEYTTIKTKEMEEQV-----EIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEA----------EENYLIKR 295
Cdd:COG2433 400 EKEHEERELTEEEEEIrrleeQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIrkdreisrldREIERLER 479
|
90 100 110
....*....|....*....|....*....|
gi 1034561704 296 ELATIKQQSDEASAKLEQAEnTIRKLQHQQ 325
Cdd:COG2433 480 ELEEERERIEELKRKLERLK-ELWKLEHSG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
210-469 |
6.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 210 PDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQvtRAQEAEE 289
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER--FAAALGD 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 290 NYLiKRELATIKQQSDEASAKLEQAENTIRKL--QHQQQWHKCSSN------YNEDFVLQLEKeLVQARLSEAESQcaLK 361
Cdd:COG4913 762 AVE-RELRENLEERIDALRARLNRAEEELERAmrAFNREWPAETADldadleSLPEYLALLDR-LEEDGLPEYEER--FK 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 362 EMQdkvldieKRNNslpdENNIARLQEELiavkLREAEAIMG-LKELRQQVKDLEEHWQRHLARTTGRWKDPpkknAMNE 440
Cdd:COG4913 838 ELL-------NENS----IEFVADLLSKL----RRAIREIKErIDPLNDSLKRIPFGPGRYLRLEARPRPDP----EVRE 898
|
250 260 270
....*....|....*....|....*....|...
gi 1034561704 441 LQDELMTIRLREAETQAEIREIK----QRMMEM 469
Cdd:COG4913 899 FRQELRAVTSGASLFDEELSEARfaalKRLIER 931
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
219-588 |
6.34e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 6.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 219 QVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRliqGQVTRAQEAEENYLIKR--E 296
Cdd:TIGR00618 436 QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV---LARLLELQEEPCPLCGSciH 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 297 LATIKQQSDEASA---KLEQAENTIRKLQHQQQ--WHKCSSNYNEDFVLQLEKELVQARLSEAESQ-CALKEMQDKVLDI 370
Cdd:TIGR00618 513 PNPARQDIDNPGPltrRMQRGEQTYAQLETSEEdvYHQLTSERKQRASLKEQMQEIQQSFSILTQCdNRSKEDIPNLQNI 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 371 EKRNNSLPDENNIARLQ-EELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNEL----QDEL 445
Cdd:TIGR00618 593 TVRLQDLTEKLSEAEDMlACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHAlsirVLPK 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 446 MTIRLREAETQAEIREIKQRMMEMETQNQINSNhLRRAEQEVISLQEKVQYLS----------AQNKGLLTQLSEAKRKQ 515
Cdd:TIGR00618 673 ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTL-LRELETHIEEYDREFNEIEnassslgsdlAAREDALNQSLKELMHQ 751
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034561704 516 AEIECKNKEEVMAVR-LREADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIGELKDQIAELNHEGEL 588
Cdd:TIGR00618 752 ARTVLKARTEAHFNNnEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCET 825
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
223-594 |
8.62e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 8.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 223 NSKKMKKLEKEYTTIKTKEMEeqveikrLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELatikq 302
Cdd:pfam15921 312 NSMYMRQLSDLESTVSQLRSE-------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL----- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 303 QSDEASAKLEQAENTIRKLQHQQQWHKCSSnyNEDFVLQLEKEL---------VQARLSEAESQCAlKEMQDKVLDIEKR 373
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDTG--NSITIDHLRRELddrnmevqrLEALLKAMKSECQ-GQMERQMAAIQGK 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 374 NNSLpdeNNIARLQEELIAVK--LREAeaimgLKELRQQVKDLEEHwQRHLARTTGRWKDppKKNAMNELQDELMTIRLR 451
Cdd:pfam15921 457 NESL---EKVSSLTAQLESTKemLRKV-----VEELTAKKMTLESS-ERTVSDLTASLQE--KERAIEATNAEITKLRSR 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 452 EAETQAEIREIKQRmmemetqnqinSNHLRRAEQEVISL------QEKVQYLSAQNKGLLTQLS----------EAKRKQ 515
Cdd:pfam15921 526 VDLKLQELQHLKNE-----------GDHLRNVQTECEALklqmaeKDKVIEILRQQIENMTQLVgqhgrtagamQVEKAQ 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 516 AEIECKNKE-EVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLN-------KSDSNQYIGELKDQIAELNHEGE 587
Cdd:pfam15921 595 LEKEINDRRlELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERlravkdiKQERDQLLNEVKTSRNELNSLSE 674
|
410
....*....|.
gi 1034561704 588 ----LGREGRN 594
Cdd:pfam15921 675 dyevLKRNFRN 685
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
225-587 |
9.62e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 9.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTenrlLKQRIETLEKESASLADRLIQGQVTRAQEAEEnylIKRELATIKQQS 304
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMDYNSYLKSIES----LKKKIEEYSKNIERMSAFISEILKIQEIDPDA---IKKELNEINVKL 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 305 DEASAKLEQAENTIRKL-QHQQQWHK-------------CSSNYNEDFVLQLEKELVQ--ARLSEA--ESQCALKEMQDK 366
Cdd:PRK01156 419 QDISSKVSSLNQRIRALrENLDELSRnmemlngqsvcpvCGTTLGEEKSNHIINHYNEkkSRLEEKirEIEIEVKDIDEK 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 367 VLDIEKR---------NNSLPDENNIARLQEELIAVKLREAEaimgLKELRQQVKDLEEHWQR-HLARTTGRWKDPPKKN 436
Cdd:PRK01156 499 IVDLKKRkeyleseeiNKSINEYNKIESARADLEDIKIKINE----LKDKHDKYEEIKNRYKSlKLEDLDSKRTSWLNAL 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 437 AMNELQDeLMTIRLREAETQAEIREIKQRMMEMETQ----NQINSNHLRRAEQEVISLQEKVqylsaqnkglltQLSEAK 512
Cdd:PRK01156 575 AVISLID-IETNRSRSNEIKKQLNDLESRLQEIEIGfpddKSYIDKSIREIENEANNLNNKY------------NEIQEN 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 513 RKQAEiECKNKEEVMAVRLREADSIA-AVAELRQHIaeLEIQKEEGKLQGQLNKSDSNQY------------IGELKDQI 579
Cdd:PRK01156 642 KILIE-KLRGKIDNYKKQIAEIDSIIpDLKEITSRI--NDIEDNLKKSRKALDDAKANRArlestieilrtrINELSDRI 718
|
....*...
gi 1034561704 580 AELNHEGE 587
Cdd:PRK01156 719 NDINETLE 726
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
228-545 |
1.26e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 228 KKLE--KEYTTIKTKEMEEQVE-IKRLRTENRLLKQRIETLEkESASLADRLI-----QGQVTRAQEAEENYLIKRELAT 299
Cdd:pfam10174 401 KKIEnlQEQLRDKDKQLAGLKErVKSLQTDSSNTDTALTTLE-EALSEKERIIerlkeQREREDRERLEELESLKKENKD 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 300 IKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQAR-------------LSEAESQCALKEMQDK 366
Cdd:pfam10174 480 LKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKeecsklenqlkkaHNAEEAVRTNPEINDR 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 367 VLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKElrQQVKDLEEHWQRHLarttgrwKDPPKKNAMNELQDELM 446
Cdd:pfam10174 560 IRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKD--KKIAELESLTLRQM-------KEQNKKVANIKHGQQEM 630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 447 tiRLREAETQAEIREIKQRMMEMETQNQINS--NHLRRAEQEVISLQEKV---QYLSAQNKGLLTQLSEAKRKQAEIECK 521
Cdd:pfam10174 631 --KKKGAQLLEEARRREDNLADNSQQLQLEElmGALEKTRQELDATKARLsstQQSLAEKDGHLTNLRAERRKQLEEILE 708
|
330 340
....*....|....*....|....
gi 1034561704 522 NKEEVMAVRLREADSIAAVAELRQ 545
Cdd:pfam10174 709 MKQEALLAAISEKDANIALLELSS 732
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
309-489 |
1.48e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 309 AKLEQAENTIRKLQHQQQwhkcssNYNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPDENNIARLQE 388
Cdd:COG4717 71 KELKELEEELKEAEEKEE------EYAE---LQEELEELEEELEELEAE--LEELREELEKLEKLLQLLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 389 ELIAVKLREAEAIMGLKELRQQVKDLE------EHWQRHLARTTGRWkDPPKKNAMNELQDELMTIRLREAETQAEIREI 462
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEEELEeleaelAELQEELEELLEQL-SLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180
....*....|....*....|....*...
gi 1034561704 463 KQRMMEMETQ-NQINSNHLRRAEQEVIS 489
Cdd:COG4717 219 QEELEELEEElEQLENELEAAALEERLK 246
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
204-583 |
1.57e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 204 HQFDGVPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLL-------KQRIETLEKESASLADRL 276
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLndklkknKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 277 -IQGQVTRAQEAEENYL------IKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQA 349
Cdd:TIGR04523 113 kNDKEQKNKLEVELNKLekqkkeNKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 350 RLSEAESQCAL----------KEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKL---REAEAIMGLKELRQQVKDLEE 416
Cdd:TIGR04523 193 KNKLLKLELLLsnlkkkiqknKSLESQISELKKQNNQL--KDNIEKKQQEINEKTTeisNTQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 417 HWQRHLARTTGRWKDppKKNAMNELQDELMTI---------------------RLREAETQ------------AEIREIK 463
Cdd:TIGR04523 271 EKQKELEQNNKKIKE--LEKQLNQLKSEISDLnnqkeqdwnkelkselknqekKLEEIQNQisqnnkiisqlnEQISQLK 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 464 QRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKeevmavrlreadsiaavaEL 543
Cdd:TIGR04523 349 KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ------------------QK 410
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1034561704 544 RQHIAELEIQKEEGKLQGQLNKS---DSNQYIGELKDQIAELN 583
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIERLKEtiiKNNSEIKDLTNQDSVKE 453
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
291-458 |
2.27e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 291 YLIKRELATIKQQSDEASAK--LEQAE---NTIRK---LQHQQQWHKCSSnynedfvlQLEKELVQAR--LSEAESQCAL 360
Cdd:PRK12704 22 YFVRKKIAEAKIKEAEEEAKriLEEAKkeaEAIKKealLEAKEEIHKLRN--------EFEKELRERRneLQKLEKRLLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 361 KEMQ--DKVLDIEKRNNSLPD-ENNIARLQEEliavklreaeaimgLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNA 437
Cdd:PRK12704 94 KEENldRKLELLEKREEELEKkEKELEQKQQE--------------LEKKEEELEELIEEQLQELERISGLTAEEAKEIL 159
|
170 180
....*....|....*....|....
gi 1034561704 438 MNELQDEL---MTIRLREAETQAE 458
Cdd:PRK12704 160 LEKVEEEArheAAVLIKEIEEEAK 183
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
342-560 |
2.48e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 342 LEKEL--VQARLSEAESqcALKEMQDK--VLDIEKRNNSLpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEeh 417
Cdd:COG3206 180 LEEQLpeLRKELEEAEA--ALEEFRQKngLVDLSEEAKLL--LQQLSELESQLAEARAELAEAEARLAALRAQLGSGP-- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 418 wqrhlarttgrwkdppkkNAMNELQD--ELMTIRLREAETQAEIREIKQRMMEmetqnqinsNHlrraeQEVISLQEKVQ 495
Cdd:COG3206 254 ------------------DALPELLQspVIQQLRAQLAELEAELAELSARYTP---------NH-----PDVIALRAQIA 301
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561704 496 YLSAQNKglltqlSEAKRKQAEIEcknkEEVMAVRLREADSIAAVAELRQHIAEL-EIQKEEGKLQ 560
Cdd:COG3206 302 ALRAQLQ------QEAQRILASLE----AELEALQAREASLQAQLAQLEARLAELpELEAELRRLE 357
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
225-583 |
2.72e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL--IQGQV--TRAQEAEENYLI------- 293
Cdd:TIGR04523 131 KQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKlnIQKNIdkIKNKLLKLELLLsnlkkki 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 294 -------------KRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQA--RLSEAESQC 358
Cdd:TIGR04523 211 qknkslesqiselKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 359 ALKEMQDKVLDIEKRNNSLPD-ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHwqrhlaRTTGRWKDPPKKNA 437
Cdd:TIGR04523 291 NQLKSEISDLNNQKEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE------LTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 438 MNELQDELMTIRLREAETQAEIREIKQRMMEMETQ-------NQINSNHLRRAEQEVISLQEKVQYLSAQNKGLLTQLSE 510
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKiqnqeklNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 511 AKRKQAEIECKNK---------EEVMAVRLREADSIAAvaELRQHIAELEIQKEEGKlqgQLN--KSDSNQYIGELKDQI 579
Cdd:TIGR04523 445 LTNQDSVKELIIKnldntreslETQLKVLSRSINKIKQ--NLEQKQKELKSKEKELK---KLNeeKKELEEKVKDLTKKI 519
|
....
gi 1034561704 580 AELN 583
Cdd:TIGR04523 520 SSLK 523
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
225-500 |
3.97e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADR-----------------LIQGQVTRAQEA 287
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaallALLGLGGSLLSL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 288 EEN----------------YLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARL 351
Cdd:COG4717 272 ILTiagvlflvlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 352 SEAESQCALKEMQdkVLDIEKRNNSLPDENNIArlQEELIAVKLREAEAimgLKELRQQVKDLEEHWQRHLARTTGRWKD 431
Cdd:COG4717 352 LLREAEELEEELQ--LEELEQEIAALLAEAGVE--DEEELRAALEQAEE---YQELKEELEELEEQLEELLGELEELLEA 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034561704 432 PPKKNAMNELQDELMTIRLREAET---QAEIREIKQRMMEMETQNQinsnhLRRAEQEVISLQEKVQYLSAQ 500
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELeelREELAELEAELEQLEEDGE-----LAELLQELEELKAELRELAEE 491
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
225-581 |
4.23e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQS 304
Cdd:TIGR04523 349 KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 305 DEASAKLEQAENTIRKLQhqqqwhkcssnyNEDFVLQLE-KELVQARLSEaesqcalkEMQDKVLDIEKRNNslpdENNI 383
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLT------------NQDSVKELIiKNLDNTRESL--------ETQLKVLSRSINKI----KQNL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 384 ARLQEELiavKLREAEaimgLKELRQQVKDLEEhwqrhlarttgRWKDPPKKNAMNELQDELMTIRLREAETqaEIREIK 463
Cdd:TIGR04523 485 EQKQKEL---KSKEKE----LKKLNEEKKELEE-----------KVKDLTKKISSLKEKIEKLESEKKEKES--KISDLE 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 464 QRMMEMETQNqiNSNHLrraEQEVISLQEKVQYLSAQNKGLltqlsEAKRKQAEIECKNKE-EVMAVRLREADSIAAVAE 542
Cdd:TIGR04523 545 DELNKDDFEL--KKENL---EKEIDEKNKEIEELKQTQKSL-----KKKQEEKQELIDQKEkEKKDLIKEIEEKEKKISS 614
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1034561704 543 LRQHIAelEIQKEEGKLQGQLNKSDS-----NQYIGELKDQIAE 581
Cdd:TIGR04523 615 LEKELE--KAKKENEKLSSIIKNIKSkknklKQEVKQIKETIKE 656
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
435-596 |
4.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 435 KNAMNELQDELMTIR--LREAEtqAEIREIKQR--MMEMETQNQINSNHLRRAEQEVISLQekvqylsaqnkgllTQLSE 510
Cdd:COG3206 174 RKALEFLEEQLPELRkeLEEAE--AALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEAR--------------AELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 511 AKRKQAEIECKNKEEVMAVRLREADSiaAVAELRQHIAELEIQKEEgkLQGQLnkSDSNQYIGELKDQIAELnhEGELGR 590
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSP--VIQQLRAQLAELEAELAE--LSARY--TPNHPDVIALRAQIAAL--RAQLQQ 309
|
....*.
gi 1034561704 591 EGRNVI 596
Cdd:COG3206 310 EAQRIL 315
|
|
| DUF1129 |
pfam06570 |
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial ... |
332-372 |
4.45e-03 |
|
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial proteins of unknown function.
Pssm-ID: 429008 Cd Length: 200 Bit Score: 39.18 E-value: 4.45e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1034561704 332 SNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEK 372
Cdd:pfam06570 3 TKKNQDYIFRLTKQLIKDGKSDEEIKEILDEMLPEILEGQK 43
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
205-406 |
4.79e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 205 QFDGVPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLiqGQVTRA 284
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL--GERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 285 ---QEAEENYL------------IKReLATIKQQSDEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQA 349
Cdd:COG3883 95 lyrSGGSVSYLdvllgsesfsdfLDR-LSALSKIADADADLLEELKADKAELEAKKA--------------ELEAKLAEL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561704 350 RLSEAESQCALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKE 406
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
258-487 |
5.71e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 258 LKQRIETLEK-ESASLADRLIQGQVTRAQEaeenYL-----IKRELATIKQQSDEASAKLEQAENTIRKLQHQQQwhkcs 331
Cdd:PRK11281 41 VQAQLDALNKqKLLEAEDKLVQQDLEQTLA----LLdkidrQKEETEQLKQQLAQAPAKLRQAQAELEALKDDND----- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 332 SNYNEDF----VLQLEKEL---------VQARLSEAES------------QCALKEMQDKVLDIEKRNNSLPDENN---- 382
Cdd:PRK11281 112 EETRETLstlsLRQLESRLaqtldqlqnAQNDLAEYNSqlvslqtqperaQAALYANSQRLQQIRNLLKGGKVGGKalrp 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 383 --IARLQEELIAVKL------REAEAIMGLKELRQQVKDLEEHWQRHLARTTgrwkdppkknamNELQDELMTIRLREAE 454
Cdd:PRK11281 192 sqRVLLQAEQALLNAqndlqrKSLEGNTQLQDLLQKQRDYLTARIQRLEHQL------------QLLQEAINSKRLTLSE 259
|
250 260 270
....*....|....*....|....*....|....*.
gi 1034561704 455 TQAEireikqrmmEMETQ---NQINSNHLRRAEQEV 487
Cdd:PRK11281 260 KTVQ---------EAQSQdeaARIQANPLVAQELEI 286
|
|
| Fibrinogen_BP |
pfam08017 |
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ... |
343-574 |
7.30e-03 |
|
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.
Pssm-ID: 311808 [Multi-domain] Cd Length: 393 Bit Score: 39.46 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 343 EKELVQARLSEAESQCALKEMQDKVLDIEKRN--NSLPDENNIARLQEELIAVKLREAEAimglkELRQQVKDLEEHWQR 420
Cdd:pfam08017 75 QGNVLERRQRDAENRSQGNVLERRQRDAENRSqgNVLERRQRDAENKSQGNVLERRQRDA-----ENRSQGNVLERRQRD 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 421 HLARTTGRWKDPPKKNAMNELQDELMTIRLREAE--TQAEIREIKQRMMEMETQNQINSNHLRRAEQEVISLQEKVQYLS 498
Cdd:pfam08017 150 AENRSQGNVLERRQRDAENRSQGNVLERRQRDAEnkSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRD 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 499 AQNKgllTQLSEAKRKQAEIECKNKEEVMAVRLREAD--SIAAVAELRQHIAELEIQKE--EGKLQGQLNKSDSNQYIGE 574
Cdd:pfam08017 230 AENR---SQGNVLERRQRDAENKSQGNVLERRQRDAEnrSQGNVLERRQRDAENRSQGNvlERRQRDAENKSQVGQLIGK 306
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
341-588 |
9.33e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.44 E-value: 9.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 341 QLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIARLQ---------EELIAVKLREAEAimGLKELRQQV 411
Cdd:pfam12128 217 RLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTL--ESAELRLShlhfgyksdETLIASRQEERQE--TSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 412 KDLEEHWQRHLARTTGRWKDPPKKNAMNELQDELMTIRLReaetQAEIREIKQRMMEMETQNQINSNhlrraeqevISLQ 491
Cdd:pfam12128 293 RTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHG----AFLDADIETAAADQEQLPSWQSE---------LENL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 492 EKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRL----READSIAAVAE--LRQHIAELEIQKEEGKLQGQLNK 565
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLakirEARDRQLAVAEddLQALESELREQLEAGKLEFNEEE 439
|
250 260
....*....|....*....|...
gi 1034561704 566 SDSNQYIGELKDQIAELNHEGEL 588
Cdd:pfam12128 440 YRLKSRLGELKLRLNQATATPEL 462
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
225-526 |
9.45e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.23 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 225 KKMKKLEKEY-TTIKTKEMEEQV---EIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATI 300
Cdd:TIGR04523 401 QNQEKLNQQKdEQIKKLQQEKELlekEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 301 KQQSDEASAKLEQAENTIRKLQHQQqwhKCSSNYNEDFVLQLEKELVQARLSEAEsqcaLKEMQDKVLDIEKRNNSLPDE 380
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEEK---KELEEKVKDLTKKISSLKEKIEKLESE----KKEKESKISDLEDELNKDDFE 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561704 381 NNIARLQEELIAVKLReaeaimgLKELRQQVKDLEEhwqrhlarttgrwKDPPKKNAMNELQDELMTIRLREAETQAEIR 460
Cdd:TIGR04523 554 LKKENLEKEIDEKNKE-------IEELKQTQKSLKK-------------KQEEKQELIDQKEKEKKDLIKEIEEKEKKIS 613
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561704 461 EIKQRMMEMETQNqinsnhlRRAEQEVISLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEV 526
Cdd:TIGR04523 614 SLEKELEKAKKEN-------EKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESK 672
|
|
| |
