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Conserved domains on  [gi|1034568646|ref|XP_016871863|]
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leucine-rich repeat-containing protein 20 isoform X1 [Homo sapiens]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
26-156 1.30e-19

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 84.99  E-value: 1.30e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  26 TLDLAECKLVSFPIGIYKvLRNvsgqIHLITLANNELKSLTSKFmTTFSQLRELHLEGNFLHRLPSEVSALQHLKAIDLS 105
Cdd:COG4886   117 SLDLSGNQLTDLPEELAN-LTN----LKELDLSNNQLTDLPEPL-GNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLS 190

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1034568646 106 RNQFQDFPEQLTALPALETINLEENEIVDVPVEkLAAMPALRSINLRFNPL 156
Cdd:COG4886   191 NNQITDLPEPLGNLTNLEELDLSGNQLTDLPEP-LANLTNLETLDLSNNQL 240
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
26-156 1.30e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 84.99  E-value: 1.30e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  26 TLDLAECKLVSFPIGIYKvLRNvsgqIHLITLANNELKSLTSKFmTTFSQLRELHLEGNFLHRLPSEVSALQHLKAIDLS 105
Cdd:COG4886   117 SLDLSGNQLTDLPEELAN-LTN----LKELDLSNNQLTDLPEPL-GNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLS 190

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1034568646 106 RNQFQDFPEQLTALPALETINLEENEIVDVPVEkLAAMPALRSINLRFNPL 156
Cdd:COG4886   191 NNQITDLPEPLGNLTNLEELDLSGNQLTDLPEP-LANLTNLETLDLSNNQL 240
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 74-161 4.00e-08

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 50.94  E-value: 4.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  74 SQLRELHLEGNflhRLPSEVS---------ALQH-LKAIDLSRNQFQDfPEQLTALPALETINLEENEIVDVP--VEKLA 141
Cdd:cd21340    90 TNLEELHIENQ---RLPPGEKltfdprslaALSNsLRVLNISGNNIDS-LEPLAPLRNLEQLDASNNQISDLEelLDLLS 165

                          90       100
                  ....*....|....*....|
gi 1034568646 142 AMPALRSINLRFNPLNAEVR 161
Cdd:cd21340   166 SWPSLRELDLTGNPVCKKPK 185
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
7-184 4.09e-08

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 52.01  E-value: 4.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646   7 EAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMttfSQLRELHLEGNFL 86
Cdd:PRK15370  156 EAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQL 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  87 HRLPSEVSalQHLKAIDLSRNQFQDFPEQLTAlpALETINLEENEI-------------VDVPVEKLAAMPA-----LRS 148
Cdd:PRK15370  233 TSIPATLP--DTIQEMELSINRITELPERLPS--ALQSLDLFHNKIsclpenlpeelryLSVYDNSIRTLPAhlpsgITH 308

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1034568646 149 INLRFNPLNAEVRVIAPPLikfDMLMSPEGARAPLP 184
Cdd:PRK15370  309 LNVQSNSLTALPETLPPGL---KTLEAGENALTSLP 341
LRR_8 pfam13855
Leucine rich repeat;
74-132 2.84e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.90  E-value: 2.84e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034568646  74 SQLRELHLEGNFLHRLPSEV-SALQHLKAIDLSRNQFQDF-PEQLTALPALETINLEENEI 132
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAfKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
26-156 1.30e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 84.99  E-value: 1.30e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  26 TLDLAECKLVSFPIGIYKvLRNvsgqIHLITLANNELKSLTSKFmTTFSQLRELHLEGNFLHRLPSEVSALQHLKAIDLS 105
Cdd:COG4886   117 SLDLSGNQLTDLPEELAN-LTN----LKELDLSNNQLTDLPEPL-GNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLS 190

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1034568646 106 RNQFQDFPEQLTALPALETINLEENEIVDVPVEkLAAMPALRSINLRFNPL 156
Cdd:COG4886   191 NNQITDLPEPLGNLTNLEELDLSGNQLTDLPEP-LANLTNLETLDLSNNQL 240
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
26-156 3.53e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 80.75  E-value: 3.53e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  26 TLDLAECKLVSFPigiyKVLRNVSgQIHLITLANNELKSLtSKFMTTFSQLRELHLEGNFLHRLPSEVSALQHLKAIDLS 105
Cdd:COG4886   140 ELDLSNNQLTDLP----EPLGNLT-NLKSLDLSNNQLTDL-PEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLS 213

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1034568646 106 RNQFQDFPEQLTALPALETINLEENEIVDVPveKLAAMPALRSINLRFNPL 156
Cdd:COG4886   214 GNQLTDLPEPLANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLSNNQL 262
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
23-157 7.53e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.20  E-value: 7.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  23 GSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTskfmttfsQLRELHLEGNFLHRLPSEVSALQHLKAI 102
Cdd:COG4886    70 SLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLT--------NLESLDLSGNQLTDLPEELANLTNLKEL 141

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1034568646 103 DLSRNQFQDFPEQLTALPALETINLEENEIVDVPVEkLAAMPALRSINLRFNPLN 157
Cdd:COG4886   142 DLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEE-LGNLTNLKELDLSNNQIT 195
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
26-173 3.25e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 61.10  E-value: 3.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  26 TLDLAECKLVSFPIGIYKvLRNvsgqIHLITLANNELKSLtSKFMTTFSQLRELHLEGNFLHRLPsEVSALQHLKAIDLS 105
Cdd:COG4886   186 ELDLSNNQITDLPEPLGN-LTN----LEELDLSGNQLTDL-PEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLS 258

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034568646 106 RNQFQDFPEqLTALPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDML 173
Cdd:COG4886   259 NNQLTDLPP-LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLL 325
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 74-161 4.00e-08

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 50.94  E-value: 4.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  74 SQLRELHLEGNflhRLPSEVS---------ALQH-LKAIDLSRNQFQDfPEQLTALPALETINLEENEIVDVP--VEKLA 141
Cdd:cd21340    90 TNLEELHIENQ---RLPPGEKltfdprslaALSNsLRVLNISGNNIDS-LEPLAPLRNLEQLDASNNQISDLEelLDLLS 165

                          90       100
                  ....*....|....*....|
gi 1034568646 142 AMPALRSINLRFNPLNAEVR 161
Cdd:cd21340   166 SWPSLRELDLTGNPVCKKPK 185
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
7-184 4.09e-08

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 52.01  E-value: 4.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646   7 EAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMttfSQLRELHLEGNFL 86
Cdd:PRK15370  156 EAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQL 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  87 HRLPSEVSalQHLKAIDLSRNQFQDFPEQLTAlpALETINLEENEI-------------VDVPVEKLAAMPA-----LRS 148
Cdd:PRK15370  233 TSIPATLP--DTIQEMELSINRITELPERLPS--ALQSLDLFHNKIsclpenlpeelryLSVYDNSIRTLPAhlpsgITH 308

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1034568646 149 INLRFNPLNAEVRVIAPPLikfDMLMSPEGARAPLP 184
Cdd:PRK15370  309 LNVQSNSLTALPETLPPGL---KTLEAGENALTSLP 341
PLN03150 PLN03150
hypothetical protein; Provisional
 89-160 9.34e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 47.89  E-value: 9.34e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034568646  89 LPSEVSALQHLKAIDLSRNQFQ-DFPEQLTALPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEV 160
Cdd:PLN03150  434 IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 52-160 1.05e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 47.92  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  52 IHLITLANNELKSLTSKFMTTFSQLRELHLEGN-FLHRLPsEVSALQHLKAIDLSRNQFQD-FPEQLTALPALETINLEE 129
Cdd:PLN00113  430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNkFFGGLP-DSFGSKRLENLDLSRNQFSGaVPRKLGSLSELMQLKLSE 508

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1034568646 130 NEIVDVPVEKLAAMPALRSINLRFNPLNAEV 160
Cdd:PLN00113  509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539
LRR_8 pfam13855
Leucine rich repeat;
74-132 2.84e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.90  E-value: 2.84e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034568646  74 SQLRELHLEGNFLHRLPSEV-SALQHLKAIDLSRNQFQDF-PEQLTALPALETINLEENEI 132
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAfKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
97-156 3.11e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.90  E-value: 3.11e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034568646  97 QHLKAIDLSRNQFQDF-PEQLTALPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPL 156
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
19-182 1.35e-05

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 44.77  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  19 TVESGSDTLDLAECKLVSFPI---GIYKV---------LRNVSGQIHLITLANNELKSLTskfmTTFSQLRELHLEGNFL 86
Cdd:PRK15387  339 TLPSGLQELSVSDNQLASLPTlpsELYKLwaynnrltsLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRL 414

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  87 HRLPSEVSALQHLKaidLSRNQFQDFPEQLTALPALETINLEENEIVDvpveklAAMPALRSInlrfnplnAEVRVIAPP 166
Cdd:PRK15387  415 TSLPMLPSGLLSLS---VYRNQLTRLPESLIHLSSETTVNLEGNPLSE------RTLQALREI--------TSAPGYSGP 477

                         170
                  ....*....|....*.
gi 1034568646 167 LIKFDMlmspEGARAP 182
Cdd:PRK15387  478 IIRFDM----AGASAP 489
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 22-156 2.88e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 40.42  E-value: 2.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  22 SGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLItLANNEL---------KSLTSKFMttfsQLRELHLEGNFLH----- 87
Cdd:cd00116    81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELK-LNNNGLgdrglrllaKGLKDLPP----ALEKLVLGRNRLEgasce 155

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034568646  88 RLPSEVSALQHLKAIDLSRNQFQDF-----PEQLTALPALETINLEENEIVDVPVEKLAA----MPALRSINLRFNPL 156
Cdd:cd00116   156 ALAKALRANRDLKELNLANNGIGDAgiralAEGLKANCNLEVLDLNNNGLTDEGASALAEtlasLKSLEVLNLGDNNL 233
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 76-159 2.94e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 40.42  E-value: 2.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  76 LRELHLEGNFLH-----RLPSEVSALQHLKAIDLSRNQF-----QDFPEQLTALPALETINLEENEIVDVPVEKLA-AMP 144
Cdd:cd00116   167 LKELNLANNGIGdagirALAEGLKANCNLEVLDLNNNGLtdegaSALAETLASLKSLEVLNLGDNNLTDAGAAALAsALL 246

                          90
                  ....*....|....*....
gi 1034568646 145 A----LRSINLRFNPLNAE 159
Cdd:cd00116   247 SpnisLLTLSLSCNDITDD 265
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
10-148 7.92e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 39.38  E-value: 7.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  10 ARVARKVNETVESGSDTLDLAECKLVSFPigiykvlRNVSGQIHLITLANNELKSLTSkfmtTFSQLRELHLEGNFLHRL 89
Cdd:PRK15387  189 AAVVQKMRACLNNGNAVLNVGESGLTTLP-------DCLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL 257

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034568646  90 PS------EVS----ALQHLKAIDLSRNQFQDFPEQLTALPALETiNLEENEIVDvpvEKLAAMPALRS 148
Cdd:PRK15387  258 PVlppgllELSifsnPLTHLPALPSGLCKLWIFGNQLTSLPVLPP-GLQELSVSD---NQLASLPALPS 322
PLN03150 PLN03150
hypothetical protein; Provisional
 57-130 1.49e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 38.64  E-value: 1.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034568646  57 LANNELKSLTSKFMTTFSQLRELHLEGNFLH-RLPSEVSALQHLKAIDLSRNQFQ-DFPEQLTALPALETINLEEN 130
Cdd:PLN03150  425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGN 500
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 57-160 2.04e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 38.29  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  57 LANNELKSLTSKFMTTFSQLRELHLEGNFL-HRLPSEVSALQHLKAIDLSRNQFQ-DFPEQLTALPALETINLEENEIV- 133
Cdd:PLN00113  147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLvGKIPNSLTNLTSLEFLTLASNQLVgQIPRELGQMKSLKWIYLGYNNLSg 226

                          90       100
                  ....*....|....*....|....*..
gi 1034568646 134 DVPVEkLAAMPALRSINLRFNPLNAEV 160
Cdd:PLN00113  227 EIPYE-IGGLTSLNHLDLVYNNLTGPI 252
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 41-160 3.27e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 37.52  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  41 IYKVLRNVSGQI-----------HLITLANNelksLTSKFMTTFSQLRELHL----EGNFLHRLPSEVSALQHLKAIDLS 105
Cdd:PLN00113  217 IYLGYNNLSGEIpyeiggltslnHLDLVYNN----LTGPIPSSLGNLKNLQYlflyQNKLSGPIPPSIFSLQKLISLDLS 292

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034568646 106 RNQFQ-DFPEQLTALPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEV 160
Cdd:PLN00113  293 DNSLSgEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 2-159 3.77e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 36.95  E-value: 3.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646   2 LKKMGEA-VARVARKVNETVESgsdtLDLAECKL---VSFPIGiyKVLRnVSGQIHLITLANNELKS----LTSKFMTTF 73
Cdd:cd00116   120 LGDRGLRlLAKGLKDLPPALEK----LVLGRNRLegaSCEALA--KALR-ANRDLKELNLANNGIGDagirALAEGLKAN 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034568646  74 SQLRELHLEGNFLHR-----LPSEVSALQHLKAIDLSRNQFQDFP--EQLTALPA----LETINLEENEIVDVPVEKLA- 141
Cdd:cd00116   193 CNLEVLDLNNNGLTDegasaLAETLASLKSLEVLNLGDNNLTDAGaaALASALLSpnisLLTLSLSCNDITDDGAKDLAe 272

                         170       180
                  ....*....|....*....|.
gi 1034568646 142 ---AMPALRSINLRFNPLNAE 159
Cdd:cd00116   273 vlaEKESLLELDLRGNKFGEE 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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