NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1034579433|ref|XP_016874766|]
View 

uncharacterized protein C12orf42 isoform X5 [Homo sapiens]

Protein Classification

DUF4607 domain-containing protein( domain architecture ID 10634100)

DUF4607 domain-containing protein similar to Homo sapiens protein C12orf42

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF4607 pfam15380
Domain of unknown function (DUF4607); This family of proteins is found in eukaryotes. Proteins ...
57-320 5.53e-157

Domain of unknown function (DUF4607); This family of proteins is found in eukaryotes. Proteins in this family are typically between 207 and 359 amino acids in length.


:

Pssm-ID: 464688  Cd Length: 264  Bit Score: 439.30  E-value: 5.53e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433  57 MACKRLLHTCQYIVPRCSVSTVSFDEESYEEFRSSPAPSSETDEAPLIFTARGETEERARGAPKQAWNSSFLE-QLVKKP 135
Cdd:pfam15380   1 MACKRLLCTRQYIIPRSPVSTASFDEESYGEARPSPTPSSETDEVPLIFTAREEINKRTRRAPKQAWSSPFLEqQMAKKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433 136 NWAHSVNPVHLEAQGIHISRHTRPKGQPLSSPKKNSGSAARPSTAIGLCRRSQTPGALQSTGPSNTELEPEERMAVPAGA 215
Cdd:pfam15380  81 IPSHSVNPLHLEAAGTHIKRHARPQNQPLVNSKGDSGPAARPFTAIGLCRRSQTPYAPQSVSRSSSEPELEERTATTAGA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433 216 QAHPDdIQSRLLGASGNPVGKGAVAMAPEMLPKHPHTPRDRRPQADTSLHGNLAGAPLPLLAGASTHFPSKRLIKVCSSA 295
Cdd:pfam15380 161 PANPD-VQSRLLGASGNPVGRGAVAMAPEMLPKHPHAPGERRPRADASLHGNLAGAPLPLLAGASTHLPSKRLIKVCSSP 239
                         250       260
                  ....*....|....*....|....*
gi 1034579433 296 PPRPTRRFHTVCSQALSRPVVNAHL 320
Cdd:pfam15380 240 PPRPPRRFHTACSQALPRPVVNAHL 264
 
Name Accession Description Interval E-value
DUF4607 pfam15380
Domain of unknown function (DUF4607); This family of proteins is found in eukaryotes. Proteins ...
57-320 5.53e-157

Domain of unknown function (DUF4607); This family of proteins is found in eukaryotes. Proteins in this family are typically between 207 and 359 amino acids in length.


Pssm-ID: 464688  Cd Length: 264  Bit Score: 439.30  E-value: 5.53e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433  57 MACKRLLHTCQYIVPRCSVSTVSFDEESYEEFRSSPAPSSETDEAPLIFTARGETEERARGAPKQAWNSSFLE-QLVKKP 135
Cdd:pfam15380   1 MACKRLLCTRQYIIPRSPVSTASFDEESYGEARPSPTPSSETDEVPLIFTAREEINKRTRRAPKQAWSSPFLEqQMAKKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433 136 NWAHSVNPVHLEAQGIHISRHTRPKGQPLSSPKKNSGSAARPSTAIGLCRRSQTPGALQSTGPSNTELEPEERMAVPAGA 215
Cdd:pfam15380  81 IPSHSVNPLHLEAAGTHIKRHARPQNQPLVNSKGDSGPAARPFTAIGLCRRSQTPYAPQSVSRSSSEPELEERTATTAGA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433 216 QAHPDdIQSRLLGASGNPVGKGAVAMAPEMLPKHPHTPRDRRPQADTSLHGNLAGAPLPLLAGASTHFPSKRLIKVCSSA 295
Cdd:pfam15380 161 PANPD-VQSRLLGASGNPVGRGAVAMAPEMLPKHPHAPGERRPRADASLHGNLAGAPLPLLAGASTHLPSKRLIKVCSSP 239
                         250       260
                  ....*....|....*....|....*
gi 1034579433 296 PPRPTRRFHTVCSQALSRPVVNAHL 320
Cdd:pfam15380 240 PPRPPRRFHTACSQALPRPVVNAHL 264
 
Name Accession Description Interval E-value
DUF4607 pfam15380
Domain of unknown function (DUF4607); This family of proteins is found in eukaryotes. Proteins ...
57-320 5.53e-157

Domain of unknown function (DUF4607); This family of proteins is found in eukaryotes. Proteins in this family are typically between 207 and 359 amino acids in length.


Pssm-ID: 464688  Cd Length: 264  Bit Score: 439.30  E-value: 5.53e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433  57 MACKRLLHTCQYIVPRCSVSTVSFDEESYEEFRSSPAPSSETDEAPLIFTARGETEERARGAPKQAWNSSFLE-QLVKKP 135
Cdd:pfam15380   1 MACKRLLCTRQYIIPRSPVSTASFDEESYGEARPSPTPSSETDEVPLIFTAREEINKRTRRAPKQAWSSPFLEqQMAKKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433 136 NWAHSVNPVHLEAQGIHISRHTRPKGQPLSSPKKNSGSAARPSTAIGLCRRSQTPGALQSTGPSNTELEPEERMAVPAGA 215
Cdd:pfam15380  81 IPSHSVNPLHLEAAGTHIKRHARPQNQPLVNSKGDSGPAARPFTAIGLCRRSQTPYAPQSVSRSSSEPELEERTATTAGA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034579433 216 QAHPDdIQSRLLGASGNPVGKGAVAMAPEMLPKHPHTPRDRRPQADTSLHGNLAGAPLPLLAGASTHFPSKRLIKVCSSA 295
Cdd:pfam15380 161 PANPD-VQSRLLGASGNPVGRGAVAMAPEMLPKHPHAPGERRPRADASLHGNLAGAPLPLLAGASTHLPSKRLIKVCSSP 239
                         250       260
                  ....*....|....*....|....*
gi 1034579433 296 PPRPTRRFHTVCSQALSRPVVNAHL 320
Cdd:pfam15380 240 PPRPPRRFHTACSQALPRPVVNAHL 264
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH