|
Name |
Accession |
Description |
Interval |
E-value |
| Leo1 |
pfam04004 |
Leo1-like protein; Members of this family are part of the Paf1/RNA polymerase II complex. The ... |
374-536 |
8.13e-65 |
|
Leo1-like protein; Members of this family are part of the Paf1/RNA polymerase II complex. The Paf1 complex probably functions during the elongation phase of transcription. The Leo1 subunit of the yeast Paf1-complex binds RNA and contributes to complex recruitment. The subunit acts by co-ordinating co-transcriptional chromain modifications and helping recruitment of mRNA 3prime-end processing factors.
Pssm-ID: 461126 Cd Length: 163 Bit Score: 210.51 E-value: 8.13e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 374 YFVKLPNFLSVEPRPFDPQYY-EDEFEDEEMLDEEGRTRLKLKVENTIRWRIRRDeegNEIKESNARIVKWSDGSMSLHL 452
Cdd:pfam04004 1 YLLKVPNFLSIEPKPFDPETFePEVDEESEVLDEEGRFSIKLTVENTIRWRYSPD---TGIKESNARIVRWSDGSLSLQL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 453 GNEVFDVYKAPLQGDHNHLFIRQGTG--LQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPEC 530
Cdd:pfam04004 78 GDEHFDIQSKPLQDDHTYLAARHESSelLQTQGHITEQLTFRPTSTQSDTHRRLTAALAARHKKTGAKIMLIITTEDPEL 157
|
....*.
gi 1034589675 531 QRTEMI 536
Cdd:pfam04004 158 EKKEAE 163
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
9-361 |
3.13e-17 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 86.12 E-value: 3.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 9 GSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSErSDNRS 88
Cdd:NF033609 566 GSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASD-SDSDS 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 89 EASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSD-DEER 167
Cdd:NF033609 645 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDS 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 168 AQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEkANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSD 247
Cdd:NF033609 725 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 803
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 248 DERPQASDEEhrhSDDEEEQDHKSESARGSDSEDEvlrmkrknaiaSDSEADSDTEVPKDNSGTMDLFGGAD-DISSGSD 326
Cdd:NF033609 804 SDSDSDSDSD---SDSDSDSDSDSDSDSDSDSDSD-----------SDSDSDSDSDSDSDSDSDSDSESDSNsDSESGSN 869
|
330 340 350
....*....|....*....|....*....|....*.
gi 1034589675 327 GEDKPP-TPGQPVDENGLPQDQQEEEPIPETRIEVE 361
Cdd:NF033609 870 NNVVPPnSPKNGTNASNKNEAKDSKEPLPDTGSEDE 905
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
32-328 |
1.36e-11 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 68.01 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 32 ENAASGSNASGSESDQDERGDSGQPSNK---ELFGDDSEDEGASHhSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHS 108
Cdd:NF033609 524 DNEVAFNNGSGSGDGIDKPVVPEQPDEPgeiEPIPEDSDSDPGSD-SGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSAS 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 109 GSEAPNDdEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNT 188
Cdd:NF033609 603 DSDSASD-SDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 681
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 189 DDEERPQLSDDERQQLSEEEkANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEhRHSDDEEEQD 268
Cdd:NF033609 682 SDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSD 759
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034589675 269 HKSESARGSDSEDEVlrmkrknaiASDSEADSDTEVPKDNSGTMDLFGGAD-DISSGSDGE 328
Cdd:NF033609 760 SDSDSDSDSDSDSDS---------DSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSD 811
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
1-268 |
3.56e-11 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 66.56 E-value: 3.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 1 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFG-DDSEDEGASHHSGSDN 79
Cdd:TIGR00927 627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERkGEQEGEGEIEAKEADH 706
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 80 HSERSDNRSEASERSDHE-DNDPSDVDQHSGSEapnDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEk 158
Cdd:TIGR00927 707 KGETEAEEVEHEGETEAEgTEDEGEIETGEEGE---EVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE- 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 159 IQNSDDEErAQGSDEDKLQNSDDDEKMQNTDDEERpqlSDDERQQLSEEEKANSDDERPVASDNDDEKQNS---DDEEQP 235
Cdd:TIGR00927 783 IQAGEDGE-MKGDEGAEGKVEHEGETEAGEKDEHE---GQSETQADDTEVKDETGEQELNAENQGEAKQDEkgvDGGGGS 858
|
250 260 270
....*....|....*....|....*....|...
gi 1034589675 236 QLSDEEKMQNSDDERPQASDEEHRHSDDEEEQD 268
Cdd:TIGR00927 859 DGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
101-329 |
1.07e-08 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 58.38 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 101 PSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD 180
Cdd:NF033609 558 PEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSA 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 181 DDEKMQNTDDEERPQLSDDERQQLSEeekANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDeehrh 260
Cdd:NF033609 638 SDSDSDSDSDSDSDSDSDSDSDSDSD---SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD----- 709
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034589675 261 SDDEEEQDHKSESARGSDSEDEvlrmkrknaiaSDSEADSDTEVPKDNSGTMDLFGGADDISSGSDGED 329
Cdd:NF033609 710 SDSDSDSDSDSDSDSDSDSDSD-----------SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 767
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
50-284 |
9.07e-06 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.75 E-value: 9.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 50 RGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPND-----DEDEGHRSD 124
Cdd:PRK12678 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAaqareRRERGEAAR 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 125 GGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDklQNSDDDEKMQNTDDEERpqlsddeRQQL 204
Cdd:PRK12678 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERG--ERGRREERGRDGDDRDR-------RDRR 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 205 SEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSD----SE 280
Cdd:PRK12678 210 EQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNERepelRE 289
|
....
gi 1034589675 281 DEVL 284
Cdd:PRK12678 290 DDVL 293
|
|
| Nop14 |
pfam04147 |
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ... |
140-284 |
6.08e-05 |
|
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
Pssm-ID: 461196 Cd Length: 835 Bit Score: 46.08 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 140 SDDEKWGREDKSDQSDDEkiqnsDDEERAQGSDEDKLQNSDDDEKMQNTDDEErpqLSDDERQQLSEEEKANSDDERPVA 219
Cdd:pfam04147 284 EEEEDGKKKKKHKSADDL-----DDDFVVDDDDDDEEFGLGKGIKERPTATEL---GDEDEDDFIIDDDLVESESDLELD 355
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034589675 220 SDNDDEKQNSDDEEqpqlSDEEKMQNSDDERPQASDEEhrhSDDEEEQDHKSESARGSDSEDEVL 284
Cdd:pfam04147 356 EEEEDEEEEDDEDE----DEEEEEDDDDLSDLESEEDE---EDDEFEEEKKKKKKKDEEGAKEEL 413
|
|
| CobT2 |
COG4547 |
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ... |
201-301 |
2.19e-04 |
|
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 443611 [Multi-domain] Cd Length: 608 Bit Score: 44.40 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 201 RQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDD------EEEQDHKSESA 274
Cdd:COG4547 199 RDLLRDLDLAEELGEDEDEEDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEgeseaaEAESDEMAEEA 278
|
90 100
....*....|....*....|....*..
gi 1034589675 275 RGSDSEDEVLrMKRKNAIASDSEADSD 301
Cdd:COG4547 279 EGEDSEEPGE-PWRPNAPPPDDPADPD 304
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Leo1 |
pfam04004 |
Leo1-like protein; Members of this family are part of the Paf1/RNA polymerase II complex. The ... |
374-536 |
8.13e-65 |
|
Leo1-like protein; Members of this family are part of the Paf1/RNA polymerase II complex. The Paf1 complex probably functions during the elongation phase of transcription. The Leo1 subunit of the yeast Paf1-complex binds RNA and contributes to complex recruitment. The subunit acts by co-ordinating co-transcriptional chromain modifications and helping recruitment of mRNA 3prime-end processing factors.
Pssm-ID: 461126 Cd Length: 163 Bit Score: 210.51 E-value: 8.13e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 374 YFVKLPNFLSVEPRPFDPQYY-EDEFEDEEMLDEEGRTRLKLKVENTIRWRIRRDeegNEIKESNARIVKWSDGSMSLHL 452
Cdd:pfam04004 1 YLLKVPNFLSIEPKPFDPETFePEVDEESEVLDEEGRFSIKLTVENTIRWRYSPD---TGIKESNARIVRWSDGSLSLQL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 453 GNEVFDVYKAPLQGDHNHLFIRQGTG--LQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPEC 530
Cdd:pfam04004 78 GDEHFDIQSKPLQDDHTYLAARHESSelLQTQGHITEQLTFRPTSTQSDTHRRLTAALAARHKKTGAKIMLIITTEDPEL 157
|
....*.
gi 1034589675 531 QRTEMI 536
Cdd:pfam04004 158 EKKEAE 163
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
9-361 |
3.13e-17 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 86.12 E-value: 3.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 9 GSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSErSDNRS 88
Cdd:NF033609 566 GSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASD-SDSDS 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 89 EASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSD-DEER 167
Cdd:NF033609 645 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDS 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 168 AQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEkANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSD 247
Cdd:NF033609 725 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 803
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 248 DERPQASDEEhrhSDDEEEQDHKSESARGSDSEDEvlrmkrknaiaSDSEADSDTEVPKDNSGTMDLFGGAD-DISSGSD 326
Cdd:NF033609 804 SDSDSDSDSD---SDSDSDSDSDSDSDSDSDSDSD-----------SDSDSDSDSDSDSDSDSDSDSESDSNsDSESGSN 869
|
330 340 350
....*....|....*....|....*....|....*.
gi 1034589675 327 GEDKPP-TPGQPVDENGLPQDQQEEEPIPETRIEVE 361
Cdd:NF033609 870 NNVVPPnSPKNGTNASNKNEAKDSKEPLPDTGSEDE 905
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
32-328 |
1.36e-11 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 68.01 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 32 ENAASGSNASGSESDQDERGDSGQPSNK---ELFGDDSEDEGASHhSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHS 108
Cdd:NF033609 524 DNEVAFNNGSGSGDGIDKPVVPEQPDEPgeiEPIPEDSDSDPGSD-SGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSAS 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 109 GSEAPNDdEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNT 188
Cdd:NF033609 603 DSDSASD-SDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 681
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 189 DDEERPQLSDDERQQLSEEEkANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEhRHSDDEEEQD 268
Cdd:NF033609 682 SDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSD 759
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034589675 269 HKSESARGSDSEDEVlrmkrknaiASDSEADSDTEVPKDNSGTMDLFGGAD-DISSGSDGE 328
Cdd:NF033609 760 SDSDSDSDSDSDSDS---------DSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSD 811
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
1-268 |
3.56e-11 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 66.56 E-value: 3.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 1 MADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFG-DDSEDEGASHHSGSDN 79
Cdd:TIGR00927 627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERkGEQEGEGEIEAKEADH 706
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 80 HSERSDNRSEASERSDHE-DNDPSDVDQHSGSEapnDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEk 158
Cdd:TIGR00927 707 KGETEAEEVEHEGETEAEgTEDEGEIETGEEGE---EVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE- 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 159 IQNSDDEErAQGSDEDKLQNSDDDEKMQNTDDEERpqlSDDERQQLSEEEKANSDDERPVASDNDDEKQNS---DDEEQP 235
Cdd:TIGR00927 783 IQAGEDGE-MKGDEGAEGKVEHEGETEAGEKDEHE---GQSETQADDTEVKDETGEQELNAENQGEAKQDEkgvDGGGGS 858
|
250 260 270
....*....|....*....|....*....|...
gi 1034589675 236 QLSDEEKMQNSDDERPQASDEEHRHSDDEEEQD 268
Cdd:TIGR00927 859 DGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
31-282 |
1.48e-09 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 61.16 E-value: 1.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 31 QENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGsDNHSE-------RSDNRSEA---SERSDHEDND 100
Cdd:TIGR00927 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKG-ENESEgeipaerKGEQEGEGeieAKEADHKGET 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 101 PSDVDQHSGSEAPNDDEDEGHRSDGGShhSEAEGSEKAHSDDEKWGREDKSDQSDDEkIQNSDDEERAQGSDEDKLQNSD 180
Cdd:TIGR00927 711 EAEEVEHEGETEAEGTEDEGEIETGEE--GEEVEDEGEGEAEGKHEVETEGDRKETE-HEGETEAEGKEDEDEGEIQAGE 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 181 DDEkMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDE--KQNSDDEEQPQLSDEEKmqNSDDERPQASDEEH 258
Cdd:TIGR00927 788 DGE-MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDEtgEQELNAENQGEAKQDEK--GVDGGGGSDGGDSE 864
|
250 260
....*....|....*....|....
gi 1034589675 259 RHSDDEEEQDHKSESARGSDSEDE 282
Cdd:TIGR00927 865 EEEEEEEEEEEEEEEEEEEEEEEE 888
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
62-364 |
2.34e-09 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 60.78 E-value: 2.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 62 FGDDSEDEGAShhsgSDNHSERSDNRSEASERSdhedndPSDVDQHSGSEAPNDDEDEghrsdgGSHHSEAEGSEKAHSD 141
Cdd:TIGR00927 627 LGDLSKGDVAE----AEHTGERTGEEGERPTEA------EGENGEESGGEAEQEGETE------TKGENESEGEIPAERK 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 142 DEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKlQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASD 221
Cdd:TIGR00927 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAE-GTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 222 NDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSES-ARGSDSEDEvlrmkrknAIASDSEADS 300
Cdd:TIGR00927 770 TEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETqADDTEVKDE--------TGEQELNAEN 841
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034589675 301 DTEVPKDNSGtMDLFGGADdissGSDGEDKPPTPGQPVDENGLPQDQQEEEPIPETRIEVEIPK 364
Cdd:TIGR00927 842 QGEAKQDEKG-VDGGGGSD----GGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPE 900
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
101-329 |
1.07e-08 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 58.38 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 101 PSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD 180
Cdd:NF033609 558 PEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSA 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 181 DDEKMQNTDDEERPQLSDDERQQLSEeekANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDeehrh 260
Cdd:NF033609 638 SDSDSDSDSDSDSDSDSDSDSDSDSD---SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD----- 709
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034589675 261 SDDEEEQDHKSESARGSDSEDEvlrmkrknaiaSDSEADSDTEVPKDNSGTMDLFGGADDISSGSDGED 329
Cdd:NF033609 710 SDSDSDSDSDSDSDSDSDSDSD-----------SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 767
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
10-235 |
3.75e-08 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 56.93 E-value: 3.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 10 SDADSEAERKDSDSGSDSDSDQENAASGSnasgSESDQDERGDSGQPSnkelfGDDSEDEGASHHSGSDNHSErSDNRSE 89
Cdd:TIGR00927 681 SEGEIPAERKGEQEGEGEIEAKEADHKGE----TEAEEVEHEGETEAE-----GTEDEGEIETGEEGEEVEDE-GEGEAE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 90 ASERSDHEDNDPSDVDQHSGSEAPNDDEDEG--HRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEER 167
Cdd:TIGR00927 751 GKHEVETEGDRKETEHEGETEAEGKEDEDEGeiQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKD 830
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034589675 168 AQGSDEDKLQNSDD---DEKmqNTDDEERPQLSDDERQQLSEEEKANSDDERpvasdnDDEKQNSDDEEQP 235
Cdd:TIGR00927 831 ETGEQELNAENQGEakqDEK--GVDGGGGSDGGDSEEEEEEEEEEEEEEEEE------EEEEEEEEENEEP 893
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
50-284 |
9.07e-06 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.75 E-value: 9.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 50 RGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPND-----DEDEGHRSD 124
Cdd:PRK12678 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAaqareRRERGEAAR 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 125 GGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDklQNSDDDEKMQNTDDEERpqlsddeRQQL 204
Cdd:PRK12678 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERG--ERGRREERGRDGDDRDR-------RDRR 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 205 SEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSD----SE 280
Cdd:PRK12678 210 EQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNERepelRE 289
|
....
gi 1034589675 281 DEVL 284
Cdd:PRK12678 290 DDVL 293
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
95-279 |
2.43e-05 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 47.48 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 95 DHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDED 174
Cdd:PRK08581 28 DDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 175 KLQNSDDDEKMQ------------NTDDEERPQLSD----DERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLS 238
Cdd:PRK08581 108 LTKNKYDDNYSLttliqnlfnlnsDISDYEQPRNSEkstnDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTS 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1034589675 239 DEEK--MQNSDDERPQASDEEHRHS-DDEEEQDHKSESARGSDS 279
Cdd:PRK08581 188 NKQPnsPKPTQPNQSNSQPASDDTAnQKSSSKDNQSMSDSALDS 231
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2-184 |
3.15e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.21 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 2 ADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGS---ESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSD 78
Cdd:PRK12678 123 EAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTeeeERDERRRRGDREDRQAEAERGERGRREERGRDGDD 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 79 NhsERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGShhseaegsekAHSDDEKWGREDKSDQSDDek 158
Cdd:PRK12678 203 R--DRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGD----------RDGDDGEGRGGRRGRRFRD-- 268
|
170 180
....*....|....*....|....*.
gi 1034589675 159 iQNSDDEERAQGSDEDKLQNSDDDEK 184
Cdd:PRK12678 269 -RDRRGRRGGDGGNEREPELREDDVL 293
|
|
| Nop14 |
pfam04147 |
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ... |
140-284 |
6.08e-05 |
|
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
Pssm-ID: 461196 Cd Length: 835 Bit Score: 46.08 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 140 SDDEKWGREDKSDQSDDEkiqnsDDEERAQGSDEDKLQNSDDDEKMQNTDDEErpqLSDDERQQLSEEEKANSDDERPVA 219
Cdd:pfam04147 284 EEEEDGKKKKKHKSADDL-----DDDFVVDDDDDDEEFGLGKGIKERPTATEL---GDEDEDDFIIDDDLVESESDLELD 355
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034589675 220 SDNDDEKQNSDDEEqpqlSDEEKMQNSDDERPQASDEEhrhSDDEEEQDHKSESARGSDSEDEVL 284
Cdd:pfam04147 356 EEEEDEEEEDDEDE----DEEEEEDDDDLSDLESEEDE---EDDEFEEEKKKKKKKDEEGAKEEL 413
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
63-259 |
8.53e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 45.35 E-value: 8.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 63 GDDSEDEGASHHSGSDNHSERSDNRSEASERSDH-------EDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGS 135
Cdd:PHA03169 48 PPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHgekeergQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSS 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 136 EKAHSDDEKWGRE-------DKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERqqlSEEE 208
Cdd:PHA03169 128 PESPASHSPPPSPpshpgphEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS---SPPP 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1034589675 209 KANSDDERPVASDNDDEKQNSDDEEQPQLSDEEkmqnSDDERPQASDEEHR 259
Cdd:PHA03169 205 QSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEP----TEPEREGPPFPGHR 251
|
|
| PTZ00482 |
PTZ00482 |
membrane-attack complex/perforin (MACPF) Superfamily; Provisional |
162-351 |
1.39e-04 |
|
membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Pssm-ID: 240433 [Multi-domain] Cd Length: 844 Bit Score: 45.24 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 162 SDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVA----SDNDDEKQNSDDEEQpql 237
Cdd:PTZ00482 38 VEDIEGPSAVDERTSGVLRDEGKHANILYNSILCNQKKHASFLNQRKSLDDDDDDEFDflyeDDEDDAGNATSGESS--- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 238 SDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSesargSDSEDEVLRMKRKNAIASDSEADSDteVPKDNSGTMDLFGG 317
Cdd:PTZ00482 115 TDDDSLLELPDRDEDADTQANNDQTNDFDQDDSS-----NSQTDQGLKQSVNLSSAEKLIEEKK--GQTENTFKFYNFGN 187
|
170 180 190
....*....|....*....|....*....|....
gi 1034589675 318 ADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEE 351
Cdd:PTZ00482 188 DGEEAAAKDGGKSKSSDPGPLNDSDGQGDDGDPE 221
|
|
| Nop14 |
pfam04147 |
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ... |
162-301 |
1.41e-04 |
|
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
Pssm-ID: 461196 Cd Length: 835 Bit Score: 44.92 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 162 SDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEE 241
Cdd:pfam04147 283 DEEEEDGKKKKKHKSADDLDDDFVVDDDDDDEEFGLGKGIKERPTATELGDEDEDDFIIDDDLVESESDLELDEEEEDEE 362
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 242 KMQNSDDErpqasdeehrHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSD 301
Cdd:pfam04147 363 EEDDEDED----------EEEEEDDDDLSDLESEEDEEDDEFEEEKKKKKKKDEEGAKEE 412
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
9-245 |
2.10e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 9 GSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASH--HSGSDNHSERSDN 86
Cdd:PRK12678 68 ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRErgEAARRGAARKAGE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 87 RSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEE 166
Cdd:PRK12678 148 GGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRR 227
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034589675 167 RAQGsdedklQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERpvasdNDDEKQNSDDEEQPQLSDEEKMQN 245
Cdd:PRK12678 228 GRRR------RRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDR-----RGRRGGDGGNEREPELREDDVLVP 295
|
|
| PTZ00482 |
PTZ00482 |
membrane-attack complex/perforin (MACPF) Superfamily; Provisional |
62-195 |
2.16e-04 |
|
membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Pssm-ID: 240433 [Multi-domain] Cd Length: 844 Bit Score: 44.47 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 62 FGDDSEDEgasHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSD 141
Cdd:PTZ00482 94 FDFLYEDD---EDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQDDSSNSQTDQGLKQSVNLSSAEKLIE 170
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034589675 142 DEKWGRED---KSDQSDDEKIQNSDDEERAQGSDEDKLqNSDDDEKMQNTDDEERPQ 195
Cdd:PTZ00482 171 EKKGQTENtfkFYNFGNDGEEAAAKDGGKSKSSDPGPL-NDSDGQGDDGDPESAEED 226
|
|
| CobT2 |
COG4547 |
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ... |
201-301 |
2.19e-04 |
|
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 443611 [Multi-domain] Cd Length: 608 Bit Score: 44.40 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 201 RQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDD------EEEQDHKSESA 274
Cdd:COG4547 199 RDLLRDLDLAEELGEDEDEEDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEgeseaaEAESDEMAEEA 278
|
90 100
....*....|....*....|....*..
gi 1034589675 275 RGSDSEDEVLrMKRKNAIASDSEADSD 301
Cdd:COG4547 279 EGEDSEEPGE-PWRPNAPPPDDPADPD 304
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
141-305 |
3.07e-04 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 44.01 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 141 DDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKL-------QNSDDDEKMQNTDDEERPQlsddERQQLSEEEKANSD 213
Cdd:PTZ00341 418 DLEKQKYMDMLDGSEDESVEDNEEEHSGDANEEELSvdehveeHNADDSGEQQSDDESGEHQ----SVNEIVEEQSVNEH 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 214 DERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQAS-DEEHRHSDDEEEQDHKSESArgsdsedevlrmkrkNAI 292
Cdd:PTZ00341 494 VEEPTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTiAEEHVEEEISTAEEHIEEPA---------------SDV 558
|
170
....*....|...
gi 1034589675 293 ASDSEADSDTEVP 305
Cdd:PTZ00341 559 QQDSEAAPTIEIP 571
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
55-267 |
3.77e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.87 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 55 QPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDvDQHSGSEAPNDDEDEGHRSDggshhsEAEG 134
Cdd:PRK10811 589 QEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENRE-ENRRNRRQAQQQTAETRESQ------QAEV 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 135 SEKAHSDDEKwGREDKSDQsddekiQNSDDEERAQGSDEDKLQNSDDDEKmQNTDDEERPQLSDDERQ--QLSEE---EK 209
Cdd:PRK10811 662 TEKARTQDEQ-QQAPRRER------QRRRNDEKRQAQQEAKALNVEEQSV-QETEQEERVQQVQPRRKqrQLNQKvriEQ 733
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1034589675 210 ANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQ 267
Cdd:PRK10811 734 SVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEENNAENRDNN 791
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
13-185 |
3.96e-04 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 43.83 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 13 DSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQpsnKELFGDDSEDEGASHHSGSDNHSersdNRSEASE 92
Cdd:TIGR00927 727 EDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGE---TEAEGKEDEDEGEIQAGEDGEMK----GDEGAEG 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 93 RSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSD--QSDDEKIQNSDDEERAQG 170
Cdd:TIGR00927 800 KVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDggDSEEEEEEEEEEEEEEEE 879
|
170
....*....|....*
gi 1034589675 171 SDEDKLQNSDDDEKM 185
Cdd:TIGR00927 880 EEEEEEEEEENEEPL 894
|
|
| CobT2 |
COG4547 |
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ... |
146-266 |
5.78e-04 |
|
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 443611 [Multi-domain] Cd Length: 608 Bit Score: 42.86 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 146 GREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEkmqntdDEERPQLSDDERQQLSEEEKANSDDErpvasdnDDE 225
Cdd:COG4547 210 ELGEDEDEEDEDDEDDSGEQEEDEEDGEDEDEESDEGA------EAEDAEASGDDAEEGESEAAEAESDE-------MAE 276
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1034589675 226 KQNSDDEEQPQLSDEEKMQNSDDERP-------QASDEEHRHSD--DEEE 266
Cdd:COG4547 277 EAEGEDSEEPGEPWRPNAPPPDDPADpdykvftTAFDEVVAAEDlcDPEE 326
|
|
| TFIIF_alpha |
pfam05793 |
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ... |
111-312 |
7.61e-04 |
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.
Pssm-ID: 310411 [Multi-domain] Cd Length: 528 Bit Score: 42.63 E-value: 7.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 111 EAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDklqnSDDDEKMQNTDD 190
Cdd:pfam05793 191 AFGEHDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKKKKKKKKLAKNKKKL----DDDKKKKRGGDD 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 191 EERPQLSDDerqqlseeekaNSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDErpQASDEEHRHSDDEEEQDHK 270
Cdd:pfam05793 267 DAFEYDSDD-----------GDDEGREEDYISDSSASGNDPEEREDKLSPEEPAKGEIE--QSDDSEESEEEKNEEEGKL 333
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1034589675 271 SESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNSGTM 312
Cdd:pfam05793 334 SKKGKKAKKLKGKKNGKDKSESSDGDDSDDSDIDDEDSVPLF 375
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
12-200 |
1.09e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 41.88 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 12 ADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKElfGDDSEDEGASHHSGSDNHSERSDNRSEAS 91
Cdd:PHA03169 61 VAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSG--SAEELASGLSPENTSGSSPESPASHSPPP 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 92 ERSDHEDnDPSDVDQHSGSEAPNDDEDEGhrsDGGSHHSEAEGSEKAHSDDEKWGRE--DKSDQSDDEKIQNSDDEERAQ 169
Cdd:PHA03169 139 SPPSHPG-PHEPAPPESHNPSPNQQPSSF---LQPSHEDSPEEPEPPTSEPEPDSPGppQSETPTSSPPPQSPPDEPGEP 214
|
170 180 190
....*....|....*....|....*....|..
gi 1034589675 170 GSDE-DKLQNSDDDEKMQNTDDEERPQLSDDE 200
Cdd:PHA03169 215 QSPTpQQAPSPNTQQAVEHEDEPTEPEREGPP 246
|
|
| PTZ00482 |
PTZ00482 |
membrane-attack complex/perforin (MACPF) Superfamily; Provisional |
77-243 |
1.41e-03 |
|
membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Pssm-ID: 240433 [Multi-domain] Cd Length: 844 Bit Score: 41.77 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 77 SDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEK-WGREDKSDQSD 155
Cdd:PTZ00482 73 QKKHASFLNQRKSLDDDDDDEFDFLYEDDEDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNdFDQDDSSNSQT 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 156 DEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDeerpqlsDDERQQLSEEEKANSDDERPVASDND--DEKQNSDDEE 233
Cdd:PTZ00482 153 DQGLKQSVNLSSAEKLIEEKKGQTENTFKFYNFGN-------DGEEAAAKDGGKSKSSDPGPLNDSDGqgDDGDPESAEE 225
|
170
....*....|
gi 1034589675 234 QPQLSDEEKM 243
Cdd:PTZ00482 226 DKAASNTRAA 235
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
75-290 |
1.69e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.43 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 75 SGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQS 154
Cdd:PRK12678 61 GGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRG 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 155 DDEKiQNSDDEERAQGSDEDKLQNSDDDEKmqntdDEERPQLSDDERQQLSE-EEKANSDDERPVASDNDDEKQNSDDEE 233
Cdd:PRK12678 141 AARK-AGEGGEQPATEARADAAERTEEEER-----DERRRRGDREDRQAEAErGERGRREERGRDGDDRDRRDRREQGDR 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034589675 234 QPQLSDEEkmQNSDDERPQASDEEHRHSDDEEEQDhksesaRGSDSEDEVLRMKRKN 290
Cdd:PRK12678 215 REERGRRD--GGDRRGRRRRRDRRDARGDDNREDR------GDRDGDDGEGRGGRRG 263
|
|
| PHA02664 |
PHA02664 |
hypothetical protein; Provisional |
31-168 |
1.82e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 177447 Cd Length: 534 Bit Score: 41.14 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 31 QENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHhSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGS 110
Cdd:PHA02664 380 EVIAAGAAAAMIAAAERAANGARGSPMAAPEEGRAAAAAAAAN-APADQDVEAEAHDEFDQDPGAPAHADRADSDEDDMD 458
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034589675 111 EAPNDDEDEGHRSDGGSHHSEA--EGSEKAHSDDEKWGREDKSDQSDD-----EKIQNSDDEERA 168
Cdd:PHA02664 459 EQESGDERADGEDDSDSSYSYSttSSEDESDSADDSWGDESDSGIEHDdggvgQAIEEEEEEERA 523
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
112-367 |
2.10e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 41.11 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 112 APNDDEDEGHRSdggshhseaegseKAHSDDEKWGREDKSDQSDDEKiqNSDDEERAQGSDEDKLQNSDDDEKMQNTDDE 191
Cdd:PHA03169 47 APPAPTTSGPQV-------------RAVAEQGHRQTESDTETAEESR--HGEKEERGQGGPSGSGSESVGSPTPSPSGSA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 192 ErpqlsdDERQQLSEEEKANSDDERPvasdnddeKQNSDDEEQPqlSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKS 271
Cdd:PHA03169 112 E------ELASGLSPENTSGSSPESP--------ASHSPPPSPP--SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 272 ESARGSDSEDEvlrmkrknaiaSDSEADSDTEVPKDnsgtmdlfGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEE 351
Cdd:PHA03169 176 EEPEPPTSEPE-----------PDSPGPPQSETPTS--------SPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDE 236
|
250
....*....|....*.
gi 1034589675 352 PIPETRIEVEIPKVNT 367
Cdd:PHA03169 237 PTEPEREGPPFPGHRS 252
|
|
| COG5593 |
COG5593 |
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal ... |
149-272 |
2.14e-03 |
|
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227880 [Multi-domain] Cd Length: 821 Bit Score: 41.18 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 149 DKSDQSDDEKIQNSDDEERAQ---GSDEDKLQNSDDDEKMQNTDDEERPQLSDDErqQLSEEEKANSDDErpvasDNDDE 225
Cdd:COG5593 680 DSDDEMDENEIWSALVKSRPDvedDSDDSELDFAEDDFSDSTSDDEPKLDAIDDE--DAKSEGSQESDQE-----EGLDE 752
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1034589675 226 KQNSDDEEQPQlSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSE 272
Cdd:COG5593 753 IFYSFDGEQDN-SDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQ 798
|
|
| CobT2 |
COG4547 |
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ... |
166-270 |
2.32e-03 |
|
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 443611 [Multi-domain] Cd Length: 608 Bit Score: 40.93 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 166 ERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDErpvasDNDDEKQNSDDEEQPQLSDEEKMQN 245
Cdd:COG4547 208 AEELGEDEDEEDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGD-----DAEEGESEAAEAESDEMAEEAEGED 282
|
90 100
....*....|....*....|....*
gi 1034589675 246 SDDErPQASDEEHRHSDDEEEQDHK 270
Cdd:COG4547 283 SEEP-GEPWRPNAPPPDDPADPDYK 306
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
80-282 |
2.86e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 80 HSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKI 159
Cdd:PTZ00108 1166 ASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKS 1245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 160 QNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERP-QLSDDERQQLSEEEKANSDDERPVASDNDD--------EKQNSD 230
Cdd:PTZ00108 1246 KKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAvQYSPPPPSKRPDGESNGGSKPSSPTKKKVKkrlegslaALKKKK 1325
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034589675 231 DEEQPQL----SDEEKMQNSD-DERPQASDEEHRHSDDEEEQDHKSESARGSDSEDE 282
Cdd:PTZ00108 1326 KSEKKTArkkkSKTRVKQASAsQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDE 1382
|
|
| DNA_pol_phi |
pfam04931 |
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
130-267 |
3.21e-03 |
|
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
Pssm-ID: 461488 Cd Length: 765 Bit Score: 40.68 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 130 SEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEEraQGSDEDklqnsDDDEKMQNTDDEERPQLsddeRQQLSEEEK 209
Cdd:pfam04931 628 NPEGQQELFEDEDEDEEDDDEEEDDDDEDDEDSEEDD--DEDDDD-----EDEEDDDDEDVDEIDEL----RAKLAEALG 696
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034589675 210 ANSDDErpvasDNDDEkqnSDDEEQpqlsDEEKMQNSDD-------ERPQASDEEHRHSDDEEEQ 267
Cdd:pfam04931 697 EHGDDA-----DDDDS---DSDEDM----DDEQMMALDEqlaeifkERKKAGNDKKKKKKDAKEN 749
|
|
| COG5593 |
COG5593 |
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal ... |
119-259 |
3.39e-03 |
|
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227880 [Multi-domain] Cd Length: 821 Bit Score: 40.80 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 119 EGHRSDGGSHHSEAEGSEkahsdDEKW-----GREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNtddEER 193
Cdd:COG5593 670 KGKKSNKASFDSDDEMDE-----NEIWsalvkSRPDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKS---EGS 741
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034589675 194 PQLSDDErqqlSEEEKANSDDERpvaSDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHR 259
Cdd:COG5593 742 QESDQEE----GLDEIFYSFDGE---QDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRK 800
|
|
| CobT2 |
COG4547 |
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ... |
131-228 |
3.96e-03 |
|
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 443611 [Multi-domain] Cd Length: 608 Bit Score: 40.16 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 131 EAEGSEKAHSDDEKwgREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKA 210
Cdd:COG4547 209 EELGEDEDEEDEDD--EDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGESEAAEAESDEMAEEAEGEDSEEP 286
|
90
....*....|....*...
gi 1034589675 211 NSDDERPVASDNDDEKQN 228
Cdd:COG4547 287 GEPWRPNAPPPDDPADPD 304
|
|
| Nop14 |
pfam04147 |
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ... |
111-249 |
5.47e-03 |
|
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
Pssm-ID: 461196 Cd Length: 835 Bit Score: 39.91 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 111 EAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDD 190
Cdd:pfam04147 281 EEDEEEEDGKKKKKHKSADDLDDDFVVDDDDDDEEFGLGKGIKERPTATELGDEDEDDFIIDDDLVESESDLELDEEEED 360
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034589675 191 EErpqlSDDErqqlSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDE 249
Cdd:pfam04147 361 EE----EEDD----EDEDEEEEEDDDDLSDLESEEDEEDDEFEEEKKKKKKKDEEGAKE 411
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
142-258 |
6.18e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 39.77 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 142 DEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDD--DEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVA 219
Cdd:PTZ00341 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEEniEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEI 1095
|
90 100 110
....*....|....*....|....*....|....*....
gi 1034589675 220 SDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEH 258
Cdd:PTZ00341 1096 EENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEY 1134
|
|
| COG5593 |
COG5593 |
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal ... |
146-294 |
6.78e-03 |
|
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227880 [Multi-domain] Cd Length: 821 Bit Score: 39.64 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 146 GREDKSDQSDdekiQNSDDEeraqgSDEDKLQNSDDDEKMQNTDDEERPQLsDDERQQLSEeekANSDDErPVASDNDDE 225
Cdd:COG5593 669 GKGKKSNKAS----FDSDDE-----MDENEIWSALVKSRPDVEDDSDDSEL-DFAEDDFSD---STSDDE-PKLDAIDDE 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 226 KQNSddEEQPQLSDEEKMQN---SDDERPQASD--------EEHRHSDDEEEQDHKSesargsdSEDEVLRMKRKNAIAS 294
Cdd:COG5593 735 DAKS--EGSQESDQEEGLDEifySFDGEQDNSDsfaesseeDESSEEEKEEEENKEV-------SAKRAKKKQRKNMLKS 805
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
34-184 |
7.67e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 39.19 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 34 AASGSNASGSESDQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSgSEAP 113
Cdd:PRK13108 309 ASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQA-PAAH 387
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034589675 114 NDDEDEGHRSDGGSHHSEAE---GSEKAHSDDEkwgrEDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEK 184
Cdd:PRK13108 388 QVDAEAASAAPEEPAALASEahdETEPEVPEKA----APIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRR 457
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
90-291 |
8.00e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 39.18 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 90 ASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHrsdgGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQ 169
Cdd:PHA03169 50 APTTSGPQVRAVAEQGHRQTESDTETAEESRH----GEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSG 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 170 GSDEDKLQNSDDDEKMQNTDDEERPQLSDDErqqlSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDE 249
Cdd:PHA03169 126 SSPESPASHSPPPSPPSHPGPHEPAPPESHN----PSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSS 201
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1034589675 250 RPQAS--DEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNA 291
Cdd:PHA03169 202 PPPQSppDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGP 245
|
|
| DNA_pol_phi |
pfam04931 |
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
203-313 |
8.57e-03 |
|
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
Pssm-ID: 461488 Cd Length: 765 Bit Score: 39.14 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 203 QLSEEEKANSDDERPVASDNDDEKQNSDDEEqpqlsDEEKMQNSDDErpqaSDEEhrhSDDEEEQDHKSESargsDSEDE 282
Cdd:pfam04931 622 VLDARENPEGQQELFEDEDEDEEDDDEEEDD-----DDEDDEDSEED----DDED---DDDEDEEDDDDED----VDEID 685
|
90 100 110
....*....|....*....|....*....|..
gi 1034589675 283 VLRMKRKNAI-ASDSEADSDTEvpkDNSGTMD 313
Cdd:pfam04931 686 ELRAKLAEALgEHGDDADDDDS---DSDEDMD 714
|
|
| COG5177 |
COG5177 |
Uncharacterized conserved protein [Function unknown]; |
133-257 |
8.63e-03 |
|
Uncharacterized conserved protein [Function unknown];
Pssm-ID: 227504 [Multi-domain] Cd Length: 769 Bit Score: 39.29 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 133 EGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQ-------GSDEDKLQNSDDDEKMQNTDDEERPQLS-DDERQQL 204
Cdd:COG5177 341 EGEDLRSDYDEDFEYDGLTTVRIDDHGFLPGREQTSKkaavpkgTSFYQAKWAEDEEEEDGQCNDEESTMSAiDDDDPKE 420
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1034589675 205 SEEEKANSDDERPVaSDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEE 257
Cdd:COG5177 421 NDNEEVAGDEESAI-DDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQ 472
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
47-282 |
9.50e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 39.26 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 47 QDERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSEASERSdhEDNDPSDVDQHSGSEAPNDDEDEGHRSDGG 126
Cdd:PTZ00108 1160 SKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKR--KLDDKPDNKKSNSSGSDQEDDEEQKTKPKK 1237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 127 SHHSEAEGSEKAHSDDEKWGRED-KSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLS 205
Cdd:PTZ00108 1238 SSVKRLKSKKNNSSKSSEDNDEFsSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGS 1317
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034589675 206 EEEKANSDDERPVASDNDDEKQNSDDEEQPQlsdeekmQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDE 282
Cdd:PTZ00108 1318 LAALKKKKKSEKKTARKKKSKTRVKQASASQ-------SSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDD 1387
|
|
| Nop14 |
pfam04147 |
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ... |
94-235 |
9.86e-03 |
|
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
Pssm-ID: 461196 Cd Length: 835 Bit Score: 39.14 E-value: 9.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034589675 94 SDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDggshhsEAEGSEKAHSDDEKWGREDKSDQSDDEKIqnsDDEERAQGSDE 173
Cdd:pfam04147 282 EDEEEEDGKKKKKHKSADDLDDDFVVDDDDD------DEEFGLGKGIKERPTATELGDEDEDDFII---DDDLVESESDL 352
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034589675 174 DKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQP 235
Cdd:pfam04147 353 ELDEEEEDEEEEDDEDEDEEEEEDDDDLSDLESEEDEEDDEFEEEKKKKKKKDEEGAKEELP 414
|
|
| |
