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Conserved domains on  [gi|1034603857|ref|XP_016881190|]
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tubulin polyglutamylase complex subunit 2 isoform X3 [Homo sapiens]

Protein Classification

SMI1/KNR4 family protein( domain architecture ID 10657291)

SMI1/KNR4 family protein may be involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation

CATH:  3.40.1580.10
PubMed:  8289782
SCOP:  4002285

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
44-192 7.84e-13

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


:

Pssm-ID: 214864  Cd Length: 127  Bit Score: 63.04  E-value: 7.84e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034603857   44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKLDehiiplgsmainsiskltqltqssmYSLPNAPTLADLED 123
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELP-------------------------LGGLSLLDLLELEA 55
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034603857  124 DTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTE--IWFLDRALYWHFLTDTFTAY 192
Cdd:smart00860  56 AIEDQEEIDSDIEEEEYALPGWLIFIADGGGGGILIDLDDGPGGEGGEVgvILFGDDDDEKYVVADSFEEF 126
 
Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
44-192 7.84e-13

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


Pssm-ID: 214864  Cd Length: 127  Bit Score: 63.04  E-value: 7.84e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034603857   44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKLDehiiplgsmainsiskltqltqssmYSLPNAPTLADLED 123
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELP-------------------------LGGLSLLDLLELEA 55
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034603857  124 DTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTE--IWFLDRALYWHFLTDTFTAY 192
Cdd:smart00860  56 AIEDQEEIDSDIEEEEYALPGWLIFIADGGGGGILIDLDDGPGGEGGEVgvILFGDDDDEKYVVADSFEEF 126
 
Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
44-192 7.84e-13

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


Pssm-ID: 214864  Cd Length: 127  Bit Score: 63.04  E-value: 7.84e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034603857   44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKLDehiiplgsmainsiskltqltqssmYSLPNAPTLADLED 123
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELP-------------------------LGGLSLLDLLELEA 55
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034603857  124 DTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTE--IWFLDRALYWHFLTDTFTAY 192
Cdd:smart00860  56 AIEDQEEIDSDIEEEEYALPGWLIFIADGGGGGILIDLDDGPGGEGGEVgvILFGDDDDEKYVVADSFEEF 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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