|
Name |
Accession |
Description |
Interval |
E-value |
| Mcm2 |
COG1241 |
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ... |
88-877 |
4.43e-176 |
|
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];
Pssm-ID: 440854 [Multi-domain] Cd Length: 682 Bit Score: 524.75 E-value: 4.43e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 88 DSSPLIEKiqaFEKFFTRHIdlYdKDEI-------ERKGSILVDFKELTEGGevtnliPDIATELRDAPEKTLACMGLAI 160
Cdd:COG1241 1 EESDLVDK---FEEFLRRYK--Y-RDEIlelaqeyPEKRSLVVDYNDLYSFD------PDLADDLLENPDEVLEAAEEAL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 161 HQVLTKDLErhaaelqaqeglsndgetmVNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAF 240
Cdd:COG1241 69 REIDLEPYD-------------------VSLGDAHVRITNLPETVPIRDIRSDHIGKLISVEGIVRKATEVKPKITEAAF 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 241 LCAACGEIQSFPLPDGKYSLPTKCPVpvC-RGRSFTALRSSplTVTMDWQSIKIQELMSDdqREAGRIPRTIECELVHDL 319
Cdd:COG1241 130 ECPRCGTETYVPQTGEKLQEPHECPG--CgRQGPFKLLPEK--SEFIDAQKIRIQEPPED--LPGGQQPQSIDVILEDDL 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 320 VDSCVPGDTVTITGIVKVsnaEEGSRNKNDKCMFLLYIEANSISNSkgqkTKSSEDgckhgmlMEFSLKDLYAIQEIQAE 399
Cdd:COG1241 204 VGEVRPGDRVTVTGILRI---EQRTSGRGKSTIFDLYLEANSIEVE----EKEFEE-------IEITEEDEEKIKELSKD 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 400 ENLFKLIVKwSLAlsprleysgaisahcnlhlPSsnssptsacrvagTTGMRHqtqllllVKAGLALALFGGSQKYADDK 479
Cdd:COG1241 270 PDIYEKIIA-SIA-------------------PS-------------IYGYEE-------IKEAIALQLFGGVPKVLPDG 309
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 480 NRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGnttttsgltvtlsKDSSS--------------GDFALEAG 545
Cdd:COG1241 310 SRI--RGDIHILLVGDPGTAKSQLLRYAARLAPRGVYTSG-------------KGSTAagltaaavrddfgtGRWTLEAG 374
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 546 ALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALL 624
Cdd:COG1241 375 ALVLADGGLACIDELDKMREEDRsALHEAMEQQTISIAKAGIVATLNARCSVLAAANPKYGRFDPYEPIAEQIDLPPTLL 454
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 625 SRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissatvarmnsqdsntsVLEVVSEKPLSERLKVVPGETIDP-IPH 703
Cdd:COG1241 455 SRFDLIFVLRDKPDEERDRELARH----------------------------ILKVHRAGELLEQEIEEETEEVKPeIDP 506
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 704 QLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSS-PITTRQLESLIRLTEARARLELREEATKEDAEDIVE 782
Cdd:COG1241 507 DLLRKYIAYARRNVFPVLTEEAKDLIEDFYVDMRKKGEDEDSPvPITARQLEALIRLAEASARMRLSDTVTEEDAERAIR 586
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 783 IMKYSMLGTYSD-EFGNLDFERSQHGSGMSNRSTAKRFISALNNVAERtYNNIFQFHQLRQIAKELNIQVADFENFIGSL 861
Cdd:COG1241 587 LVDSCLKDVGVDpETGKFDIDVIETGTSKSQRDKMKLIKDIIKELEEE-SSGGAPIEDVIEEAEEEGIDREKAEELIEKL 665
|
810
....*....|....*.
gi 1034625954 862 NDQGYLLKKGPKVYQL 877
Cdd:COG1241 666 KRKGEIYEPKPGHYKK 681
|
|
| MCM8 |
cd17759 |
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a ... |
459-787 |
2.32e-166 |
|
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a complex with Mcm9 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350665 [Multi-domain] Cd Length: 289 Bit Score: 485.11 E-value: 2.32e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 459 LVKAGLALALFGGSQKYADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSG 538
Cdd:cd17759 15 LVKAGLLLSLFGGKQKYADDKNRIPIRGDPHVLIVGDPGLGKSQMLQAACNIAPRGVYVCGNTTTTSGLTVTLTKDGRSG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 539 DFALEAGALVLGDQGICGIDEFDKMGNQHQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17759 95 DFALEAGALVLGDQGICGIDEFDKMGSQHQALLEAMEQQSVSLAKAGVVCSLPARTSVIAAANPVGGHYNKGKTVSENLK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissatvarmnsqdsntsvlevvsekplserlkvvpgeti 698
Cdd:cd17759 175 MGPALLSRFDLVFILLDTPSEEHDHLLSEH-------------------------------------------------- 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 dpipHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAE 778
Cdd:cd17759 205 ----HQLLRKYISYARQYVNPVLSKDASEALQEFYLELRKQNQLADSSPITTRQLESLIRLTEARARLELREEATKEDAE 280
|
....*....
gi 1034625954 779 DIVEIMKYS 787
Cdd:cd17759 281 DVIEIMKES 289
|
|
| MCM |
smart00350 |
minichromosome maintenance proteins; |
207-789 |
4.68e-141 |
|
minichromosome maintenance proteins;
Pssm-ID: 214631 [Multi-domain] Cd Length: 509 Bit Score: 428.22 E-value: 4.68e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 207 LKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRSSpLTVTM 286
Cdd:smart00350 5 IRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSPTPFSLNHE-RSTFI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 287 DWQSIKIQElmSDDQREAGRIPRTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDKCMFLLYIEANSIsnsK 366
Cdd:smart00350 84 DFQKIKLQE--SPEEVPVGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNVPYGFKLNTVKGLPVFATYIEANHV---R 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 367 GQKTKSSEDGCkHGMLMEFSLKDLYAIQEIQAEENLFKLIVKwSLALSprleysgaISAHCNlhlpssnssptsacrvag 446
Cdd:smart00350 159 KLDYKRSFEDS-SFSVQSLSDEEEEEIRKLSKDPDIYERLAR-SLAPS--------IYGHED------------------ 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 447 ttgmrhqtqllllVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSG 526
Cdd:smart00350 211 -------------IKKAILLLLFGGVHKNLPDGMKI--RGDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVG 275
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 527 LTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGG 605
Cdd:smart00350 276 LTAAVTRDPETREFTLEAGALVLADNGVCCIDEFDKMDDSDRtAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGG 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 606 HYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIragkqrtissatvaRMNSQDSNTSVLEVvsekp 685
Cdd:smart00350 356 RYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL--------------HRYSHPEEDEAFEP----- 416
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 686 lserlkvvpgetidPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRK---QSQRLNSSPITTRQLESLIRLTEA 762
Cdd:smart00350 417 --------------PLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDLRKedsQTESRSSIPITVRQLESIIRLSEA 482
|
570 580
....*....|....*....|....*..
gi 1034625954 763 RARLELREEATKEDAEDIVEIMKYSML 789
Cdd:smart00350 483 HAKMRLSDVVEEADVEEAIRLLRESII 509
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
460-653 |
2.69e-93 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 292.90 E-value: 2.69e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:pfam00493 32 VKKAILLQLFGGVKKILPDGTRL--RGDINVLLVGDPGTAKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQ-HQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:pfam00493 110 FVLEAGALVLADGGVCCIDEFDKMNDEdRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDPKKSIAENIN 189
|
170 180 190
....*....|....*....|....*....|....*
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIR 653
Cdd:pfam00493 190 LPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH 224
|
|
| PTZ00111 |
PTZ00111 |
DNA replication licensing factor MCM4; Provisional |
75-832 |
6.97e-71 |
|
DNA replication licensing factor MCM4; Provisional
Pssm-ID: 173403 [Multi-domain] Cd Length: 915 Bit Score: 252.22 E-value: 6.97e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 75 YKGWKL--YFSEVYSDSSPLIEKIQAFEKFFTrHIDLYDKdeierkgsilVDFKELTEggevtnlipdiatelrdAPEKT 152
Cdd:PTZ00111 122 YYLWKLmnFIKENLRDHSTGYSRILPFEVDLM-HVYSFDK----------VLYKLLVT-----------------FPADC 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 153 LACMGLAIHQVLTKDLERHAAELQAQEglsndgetmvNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIK 232
Cdd:PTZ00111 174 IAELDKVLVKLFNELLSKHYSDLSLEN----------NSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWIV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 233 PLCTKMAF---------------------------------LCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRS 279
Cdd:PTZ00111 244 PEITMACFrcrgqkkiglndyqpctcehyeyviqgevneplLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLNNPD 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 280 SP-LTVTMDWQSIKIQELMSDDQreagriprTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDKCMFLLYIE 358
Cdd:PTZ00111 324 KDgLDNSVDNSGLNGEIYMKDNE--------VINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVN 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 359 ANSI----SNSKGQKTKSSEdgcKHGMLMEFSLKDLYAIQEIQAEENLFKLIVKwSLALSprleysgaISAHCNlhlpss 434
Cdd:PTZ00111 396 VIHVkvinSTNANQPEKGLK---YLGNENDFSDLQVYKILELSRNPMIYRILLD-SFAPS--------IKARNN------ 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 435 nssptsacrvagttgmrhqtqllllVKAGLALALFGGSqKYADDKNRIP--------IRGDPHILVVGDPGLGKSQMLQA 506
Cdd:PTZ00111 458 -------------------------VKIGLLCQLFSGN-KNSSDFNKSPdacykvdnFRGIINVLLCGDPGTAKSQLLHY 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 507 ACNVAPRGVYVCGNTTTTSGLTVTLS-KDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQALL-EAMEQQSISLAKA 584
Cdd:PTZ00111 512 THLLSPRSIYTSGKSSSSVGLTASIKfNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLyEVMEQQTVTIAKA 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 585 GVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEhVIAiragKQRTISSAT 664
Cdd:PTZ00111 592 GIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISL-SIA----KDFLLPHMT 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 665 VARMNS---QDSNTSVLEvvsekplSERLKvvPGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRK--- 738
Cdd:PTZ00111 667 GSGNDEdtyDRSNTMHVE-------DESLR--SEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQgnf 737
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 739 ---------------------QSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAEDIVEIMKYSMLGTYSDEF- 796
Cdd:PTZ00111 738 qtsnldelehaqedddddlyyQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTt 817
|
810 820 830
....*....|....*....|....*....|....*.
gi 1034625954 797 GNLDFERSQHGSGMSNRSTAKRFISALNNVAERTYN 832
Cdd:PTZ00111 818 GKIDFDQLHQGITTNKMQQLNQMYEQVLSVLTRSSN 853
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Mcm2 |
COG1241 |
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ... |
88-877 |
4.43e-176 |
|
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];
Pssm-ID: 440854 [Multi-domain] Cd Length: 682 Bit Score: 524.75 E-value: 4.43e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 88 DSSPLIEKiqaFEKFFTRHIdlYdKDEI-------ERKGSILVDFKELTEGGevtnliPDIATELRDAPEKTLACMGLAI 160
Cdd:COG1241 1 EESDLVDK---FEEFLRRYK--Y-RDEIlelaqeyPEKRSLVVDYNDLYSFD------PDLADDLLENPDEVLEAAEEAL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 161 HQVLTKDLErhaaelqaqeglsndgetmVNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAF 240
Cdd:COG1241 69 REIDLEPYD-------------------VSLGDAHVRITNLPETVPIRDIRSDHIGKLISVEGIVRKATEVKPKITEAAF 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 241 LCAACGEIQSFPLPDGKYSLPTKCPVpvC-RGRSFTALRSSplTVTMDWQSIKIQELMSDdqREAGRIPRTIECELVHDL 319
Cdd:COG1241 130 ECPRCGTETYVPQTGEKLQEPHECPG--CgRQGPFKLLPEK--SEFIDAQKIRIQEPPED--LPGGQQPQSIDVILEDDL 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 320 VDSCVPGDTVTITGIVKVsnaEEGSRNKNDKCMFLLYIEANSISNSkgqkTKSSEDgckhgmlMEFSLKDLYAIQEIQAE 399
Cdd:COG1241 204 VGEVRPGDRVTVTGILRI---EQRTSGRGKSTIFDLYLEANSIEVE----EKEFEE-------IEITEEDEEKIKELSKD 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 400 ENLFKLIVKwSLAlsprleysgaisahcnlhlPSsnssptsacrvagTTGMRHqtqllllVKAGLALALFGGSQKYADDK 479
Cdd:COG1241 270 PDIYEKIIA-SIA-------------------PS-------------IYGYEE-------IKEAIALQLFGGVPKVLPDG 309
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 480 NRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGnttttsgltvtlsKDSSS--------------GDFALEAG 545
Cdd:COG1241 310 SRI--RGDIHILLVGDPGTAKSQLLRYAARLAPRGVYTSG-------------KGSTAagltaaavrddfgtGRWTLEAG 374
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 546 ALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALL 624
Cdd:COG1241 375 ALVLADGGLACIDELDKMREEDRsALHEAMEQQTISIAKAGIVATLNARCSVLAAANPKYGRFDPYEPIAEQIDLPPTLL 454
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 625 SRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissatvarmnsqdsntsVLEVVSEKPLSERLKVVPGETIDP-IPH 703
Cdd:COG1241 455 SRFDLIFVLRDKPDEERDRELARH----------------------------ILKVHRAGELLEQEIEEETEEVKPeIDP 506
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 704 QLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSS-PITTRQLESLIRLTEARARLELREEATKEDAEDIVE 782
Cdd:COG1241 507 DLLRKYIAYARRNVFPVLTEEAKDLIEDFYVDMRKKGEDEDSPvPITARQLEALIRLAEASARMRLSDTVTEEDAERAIR 586
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 783 IMKYSMLGTYSD-EFGNLDFERSQHGSGMSNRSTAKRFISALNNVAERtYNNIFQFHQLRQIAKELNIQVADFENFIGSL 861
Cdd:COG1241 587 LVDSCLKDVGVDpETGKFDIDVIETGTSKSQRDKMKLIKDIIKELEEE-SSGGAPIEDVIEEAEEEGIDREKAEELIEKL 665
|
810
....*....|....*.
gi 1034625954 862 NDQGYLLKKGPKVYQL 877
Cdd:COG1241 666 KRKGEIYEPKPGHYKK 681
|
|
| MCM8 |
cd17759 |
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a ... |
459-787 |
2.32e-166 |
|
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a complex with Mcm9 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350665 [Multi-domain] Cd Length: 289 Bit Score: 485.11 E-value: 2.32e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 459 LVKAGLALALFGGSQKYADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSG 538
Cdd:cd17759 15 LVKAGLLLSLFGGKQKYADDKNRIPIRGDPHVLIVGDPGLGKSQMLQAACNIAPRGVYVCGNTTTTSGLTVTLTKDGRSG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 539 DFALEAGALVLGDQGICGIDEFDKMGNQHQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17759 95 DFALEAGALVLGDQGICGIDEFDKMGSQHQALLEAMEQQSVSLAKAGVVCSLPARTSVIAAANPVGGHYNKGKTVSENLK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissatvarmnsqdsntsvlevvsekplserlkvvpgeti 698
Cdd:cd17759 175 MGPALLSRFDLVFILLDTPSEEHDHLLSEH-------------------------------------------------- 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 dpipHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAE 778
Cdd:cd17759 205 ----HQLLRKYISYARQYVNPVLSKDASEALQEFYLELRKQNQLADSSPITTRQLESLIRLTEARARLELREEATKEDAE 280
|
....*....
gi 1034625954 779 DIVEIMKYS 787
Cdd:cd17759 281 DVIEIMKES 289
|
|
| MCM |
smart00350 |
minichromosome maintenance proteins; |
207-789 |
4.68e-141 |
|
minichromosome maintenance proteins;
Pssm-ID: 214631 [Multi-domain] Cd Length: 509 Bit Score: 428.22 E-value: 4.68e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 207 LKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRSSpLTVTM 286
Cdd:smart00350 5 IRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSPTPFSLNHE-RSTFI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 287 DWQSIKIQElmSDDQREAGRIPRTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDKCMFLLYIEANSIsnsK 366
Cdd:smart00350 84 DFQKIKLQE--SPEEVPVGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNVPYGFKLNTVKGLPVFATYIEANHV---R 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 367 GQKTKSSEDGCkHGMLMEFSLKDLYAIQEIQAEENLFKLIVKwSLALSprleysgaISAHCNlhlpssnssptsacrvag 446
Cdd:smart00350 159 KLDYKRSFEDS-SFSVQSLSDEEEEEIRKLSKDPDIYERLAR-SLAPS--------IYGHED------------------ 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 447 ttgmrhqtqllllVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSG 526
Cdd:smart00350 211 -------------IKKAILLLLFGGVHKNLPDGMKI--RGDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVG 275
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 527 LTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGG 605
Cdd:smart00350 276 LTAAVTRDPETREFTLEAGALVLADNGVCCIDEFDKMDDSDRtAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGG 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 606 HYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIragkqrtissatvaRMNSQDSNTSVLEVvsekp 685
Cdd:smart00350 356 RYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL--------------HRYSHPEEDEAFEP----- 416
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 686 lserlkvvpgetidPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRK---QSQRLNSSPITTRQLESLIRLTEA 762
Cdd:smart00350 417 --------------PLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDLRKedsQTESRSSIPITVRQLESIIRLSEA 482
|
570 580
....*....|....*....|....*..
gi 1034625954 763 RARLELREEATKEDAEDIVEIMKYSML 789
Cdd:smart00350 483 HAKMRLSDVVEEADVEEAIRLLRESII 509
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
460-787 |
9.85e-136 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 407.11 E-value: 9.85e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKYADDknRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:cd17706 16 VKKAVLLQLFGGVQKILED--GTRIRGDIHILLVGDPGTAKSQILKYVLKIAPRGVYTSGKGSSGAGLTAAVVRDSETGE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17706 94 WYLEAGALVLADGGVCCIDEFDKMKELDRtALHEAMEQQTISIAKAGIVTTLNARCSILAAANPKGGRYNPKLSPIENIN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRtissatvarmnsqdsntsvlevvsekplseRLKVVPGETI 698
Cdd:cd17706 174 LPSPLLSRFDLIFVIRDDPDEERDEELAEHIIDLHRGSDP------------------------------EEQVKPEEDG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 DPIPHQLLRKYIGYARQyVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAE 778
Cdd:cd17706 224 IPIDIELLRKYILYARQ-IHPKISEEAREKLVRWYVELRKESERRSTIPITARQLESVIRLAEAHAKMRLSEVVTEEDVE 302
|
....*....
gi 1034625954 779 DIVEIMKYS 787
Cdd:cd17706 303 EAIRLVRHS 311
|
|
| MCM_arch |
cd17761 |
archaeal MCM protein; archaeal MCM proteins form a homohexameric ring homologous to the ... |
460-784 |
9.04e-104 |
|
archaeal MCM protein; archaeal MCM proteins form a homohexameric ring homologous to the eukaryotic Mcm2-7 helicase and also function as the replicative helicase at the replication fork
Pssm-ID: 350667 [Multi-domain] Cd Length: 308 Bit Score: 323.63 E-value: 9.04e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:cd17761 17 VKEAIALQLFGGVPKVLPDGTRI--RGDIHILLVGDPGTAKSQLLKYVSKVAPRAVYTTGKGSTAAGLTAAVVRDEGTGE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17761 95 WYLEAGALVLADKGIAVVDEIDKMRKEDRsALHEAMEQQTISIAKAGIVATLNARAAVLAAANPKFGRFDSYRPVAEQID 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissatvarmnsqdsntsVLEVVSEKPLSErlkVVPgeTI 698
Cdd:cd17761 175 LPPTLLSRFDLIFVLKDTPNEEKDRRLANH----------------------------ILDTHSGGEMRE---IKP--EI 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 DPiphQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSS-PITTRQLESLIRLTEARARLELREEATKEDA 777
Cdd:cd17761 222 DP---DLLRKYIAYARKNVRPVLTEEAKQLIKDFYVEMRKSGQETPSPvPITARQLEALVRLSEASARMRLSQEVTLEDA 298
|
....*..
gi 1034625954 778 EDIVEIM 784
Cdd:cd17761 299 ERAIRIM 305
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
460-653 |
2.69e-93 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 292.90 E-value: 2.69e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:pfam00493 32 VKKAILLQLFGGVKKILPDGTRL--RGDINVLLVGDPGTAKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQ-HQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:pfam00493 110 FVLEAGALVLADGGVCCIDEFDKMNDEdRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDPKKSIAENIN 189
|
170 180 190
....*....|....*....|....*....|....*
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIR 653
Cdd:pfam00493 190 LPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH 224
|
|
| MCM2 |
cd17753 |
DNA replication licensing factor Mcm2; Mcm2 is a helicase that play an important role in ... |
460-784 |
6.16e-92 |
|
DNA replication licensing factor Mcm2; Mcm2 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350659 [Multi-domain] Cd Length: 325 Bit Score: 293.20 E-value: 6.16e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:cd17753 16 IKTAIALALFGGVAKNPGGKHRI--RGDINVLLLGDPGTAKSQFLKYVEKTAHRAVFTTGQGASAVGLTASVRKDPVTKE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17753 94 WTLEGGALVLADKGVCLIDEFDKMNDQDRtSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYNPTLTFAQNVN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHVIairagkqrtisSATVARMNSQDSNTSVLEVVSEKPLSERLKVvpgeti 698
Cdd:cd17753 174 LTEPILSRFDILCVVRDTVDPEEDERLAKFVV-----------GSHVRSHPENDEDREGEEEKNQRQRPKETKV------ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 DPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAE 778
Cdd:cd17753 237 EPIPQELLRKYIHYAREKVRPKLNQMDMDKVSRVYADLRKESMATGSLPITVRHLESIIRISEAHAKMHLREYVSEEDVD 316
|
....*.
gi 1034625954 779 DIVEIM 784
Cdd:cd17753 317 MAIRVM 322
|
|
| MCM4 |
cd17755 |
DNA replication licensing factor Mcm4; Mcm4 is a helicase that play an important role in ... |
460-785 |
9.17e-88 |
|
DNA replication licensing factor Mcm4; Mcm4 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350661 [Multi-domain] Cd Length: 309 Bit Score: 281.63 E-value: 9.17e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKyADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:cd17755 16 VKKGILLQLFGGTRK-DFTKTGGKYRGDINILLCGDPGTSKSQLLQYVHKISPRGVYTSGKGSSAVGLTAYVTRDPDTKQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQHQALL-EAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17755 95 LVLESGALVLSDGGICCIDEFDKMSDSTRSVLhEVMEQQTLSIAKAGIITTLNARTSILASANPIGSRYNPKLTVVENID 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAiragkqrtissatvarMNSQDSNTSvlevvsekplserlkvvpgETI 698
Cdd:cd17755 175 LPPTLLSRFDLIYLVLDKVDEKYDRRLAKHLVS----------------LYLEDTPEH-------------------IQD 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 DPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQ-SQRLNSSPITTRQLESLIRLTEARARLELREEATKEDA 777
Cdd:cd17755 220 EVLDVEVLTDYISYAREHIHPKLSEEAAQELVQAYVDMRKMgSDARKRITATPRQLESLIRLAEAHAKMRLSNVVEAEDV 299
|
....*...
gi 1034625954 778 EDIVEIMK 785
Cdd:cd17755 300 EEAVRLIR 307
|
|
| MCM6 |
cd17757 |
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in ... |
460-787 |
1.14e-87 |
|
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350663 [Multi-domain] Cd Length: 307 Bit Score: 281.18 E-value: 1.14e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKYADDKnrIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:cd17757 16 VKKGILLMLLGGVHKITREG--ISLRGDINVCIVGDPSTAKSQFLKYVEEFSPRAVYTSGKASSAAGLTAAVVRDEETGD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17757 94 FVIEAGALMLADNGICCIDEFDKMDIKDQvAIHEAMEQQTISITKAGIQATLNARTSILAAANPVGGRYDRSKSLKQNIN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTISSatvarmnsqdsntsvlevvsekplserlkvvpgeti 698
Cdd:cd17757 174 ISAPIMSRFDLFFVLLDECNEVTDYAIASHIVDLHSKREEAIEP------------------------------------ 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 dPIPHQLLRKYIGYARQyVYPRLSTEAARVLQDFYLELRKQSQRLNSSP---ITTRQLESLIRLTEARARLELREEATKE 775
Cdd:cd17757 218 -PFTAEQLKRYIAYART-FKPKLTKEAKDELVEQYKELRQDDASGSTRSsyrITVRQLESLIRLSEAIARLHCSDEVTPE 295
|
330
....*....|..
gi 1034625954 776 DAEDIVEIMKYS 787
Cdd:cd17757 296 HVEEAARLLKKS 307
|
|
| MCM5 |
cd17756 |
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in ... |
460-787 |
2.51e-87 |
|
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350662 [Multi-domain] Cd Length: 317 Bit Score: 280.81 E-value: 2.51e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:cd17756 16 IKKAIACLLFGGSRKRLPDGMRL--RGDINVLLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVMRDPSTRE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMgNQHQ--ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENL 617
Cdd:cd17756 94 FYLEGGAMVLADGGVVCIDEFDKM-REDDrvAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDLKTPGDNI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 618 KMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTISSatvarmnsqdsntsvlevvsekplserlkvvpGET 697
Cdd:cd17756 173 DFQTTILSRFDMIFIVKDKHDEERDITIAKHVINIHASARKASQS--------------------------------QEN 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 698 IDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQ-------SQRLNSSPITTRQLESLIRLTEARARLELRE 770
Cdd:cd17756 221 EGEIPISKLKRYIAYCRAKCAPRLSEEAAEKLSNHYVTIRKDvrqneleSDNRSSIPITVRQLEAIIRISESLAKMELSP 300
|
330
....*....|....*..
gi 1034625954 771 EATKEDAEDIVEIMKYS 787
Cdd:cd17756 301 IATEKHVEEAIRLFQVS 317
|
|
| MCM7 |
cd17758 |
DNA replication licensing factor Mcm7; Mcm7 is a helicase that play an important role in ... |
460-787 |
3.91e-80 |
|
DNA replication licensing factor Mcm7; Mcm7 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350664 [Multi-domain] Cd Length: 306 Bit Score: 261.19 E-value: 3.91e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKYADDknrIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:cd17758 16 VKKALLLLLVGGVDKRGDG---MKIRGDINICLMGDPGVAKSQLLKYICRIAPRSVYTTGRGSSGVGLTAAVMKDPVTGE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17758 93 MTLEGGALVLADQGICCIDEFDKMDESDRtAIHEVMEQQTISIAKAGITTTLNARTSILAAANPAYGRYNPRRSPEQNIN 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHViairagkqrtissaTVARMNSQDsntsvlevvsekplserlkvvPGETI 698
Cdd:cd17758 173 LPAALLSRFDLLFLILDKPDRDNDLRLAEHV--------------TYVHQHNKQ---------------------PDSDF 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 DPIPHQLLRKYIGYARQYvYPRLSTEAARVLQDFYLELRKQSQRLNSSPITT-RQLESLIRLTEARARLELREEATKEDA 777
Cdd:cd17758 218 EPLDPKLLRAYIALAKRK-RPTVPPALADYIVQAYVEMRQEAKRSKDFTFTTpRTLLAILRLSQALARLRLSDSVEIDDV 296
|
330
....*....|
gi 1034625954 778 EDIVEIMKYS 787
Cdd:cd17758 297 EEALRLMEMS 306
|
|
| MCM9 |
cd17760 |
DNA helicase Mcm9; Mcm9 plays an important role homologous recombination repair. It forms a ... |
453-787 |
5.73e-75 |
|
DNA helicase Mcm9; Mcm9 plays an important role homologous recombination repair. It forms a complex with Mcm8 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350666 [Multi-domain] Cd Length: 299 Bit Score: 247.07 E-value: 5.73e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 453 QTQLLLLVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLS 532
Cdd:cd17760 9 QVFGLYNVKLAVAMVLAGGVQRIDASGTRV--RGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTAGIGSTSAGLTVTAV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 533 KDssSGDFALEAGALVLGDQGICGIDEFDKMG-NQHQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPvGGHYNKAK 611
Cdd:cd17760 87 KD--GGEWNLEAGALVLADGGLCCIDEFNSLKeHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNP-KGQYDPNE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 612 TVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIairagkqrtissatvarmnSQDSNTSVLEVVsekplserlk 691
Cdd:cd17760 164 SISVNIALASPLLSRFDLVLVLLDTKNEDWDRIISSFIL-------------------ENKGEPSKSSKL---------- 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 692 vvpgetidpIPHQLLRKYIGYARQyVYPRLSTEAARVLQDFYlELRKQSQRLNSSPITTRQLESLIRLTEARARLELREE 771
Cdd:cd17760 215 ---------WSMEKMRTYFCLIKN-LRPVLSDEANAILLRYY-QLQRQSDCRNAARTTIRMLESLIRLAEAHARLMFRET 283
|
330
....*....|....*.
gi 1034625954 772 ATKEDAEDIVEIMKYS 787
Cdd:cd17760 284 VTEEDAITVVSVMESS 299
|
|
| PTZ00111 |
PTZ00111 |
DNA replication licensing factor MCM4; Provisional |
75-832 |
6.97e-71 |
|
DNA replication licensing factor MCM4; Provisional
Pssm-ID: 173403 [Multi-domain] Cd Length: 915 Bit Score: 252.22 E-value: 6.97e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 75 YKGWKL--YFSEVYSDSSPLIEKIQAFEKFFTrHIDLYDKdeierkgsilVDFKELTEggevtnlipdiatelrdAPEKT 152
Cdd:PTZ00111 122 YYLWKLmnFIKENLRDHSTGYSRILPFEVDLM-HVYSFDK----------VLYKLLVT-----------------FPADC 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 153 LACMGLAIHQVLTKDLERHAAELQAQEglsndgetmvNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIK 232
Cdd:PTZ00111 174 IAELDKVLVKLFNELLSKHYSDLSLEN----------NSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWIV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 233 PLCTKMAF---------------------------------LCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRS 279
Cdd:PTZ00111 244 PEITMACFrcrgqkkiglndyqpctcehyeyviqgevneplLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLNNPD 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 280 SP-LTVTMDWQSIKIQELMSDDQreagriprTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDKCMFLLYIE 358
Cdd:PTZ00111 324 KDgLDNSVDNSGLNGEIYMKDNE--------VINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVN 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 359 ANSI----SNSKGQKTKSSEdgcKHGMLMEFSLKDLYAIQEIQAEENLFKLIVKwSLALSprleysgaISAHCNlhlpss 434
Cdd:PTZ00111 396 VIHVkvinSTNANQPEKGLK---YLGNENDFSDLQVYKILELSRNPMIYRILLD-SFAPS--------IKARNN------ 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 435 nssptsacrvagttgmrhqtqllllVKAGLALALFGGSqKYADDKNRIP--------IRGDPHILVVGDPGLGKSQMLQA 506
Cdd:PTZ00111 458 -------------------------VKIGLLCQLFSGN-KNSSDFNKSPdacykvdnFRGIINVLLCGDPGTAKSQLLHY 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 507 ACNVAPRGVYVCGNTTTTSGLTVTLS-KDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQALL-EAMEQQSISLAKA 584
Cdd:PTZ00111 512 THLLSPRSIYTSGKSSSSVGLTASIKfNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLyEVMEQQTVTIAKA 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 585 GVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEhVIAiragKQRTISSAT 664
Cdd:PTZ00111 592 GIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISL-SIA----KDFLLPHMT 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 665 VARMNS---QDSNTSVLEvvsekplSERLKvvPGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRK--- 738
Cdd:PTZ00111 667 GSGNDEdtyDRSNTMHVE-------DESLR--SEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQgnf 737
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 739 ---------------------QSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAEDIVEIMKYSMLGTYSDEF- 796
Cdd:PTZ00111 738 qtsnldelehaqedddddlyyQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTt 817
|
810 820 830
....*....|....*....|....*....|....*.
gi 1034625954 797 GNLDFERSQHGSGMSNRSTAKRFISALNNVAERTYN 832
Cdd:PTZ00111 818 GKIDFDQLHQGITTNKMQQLNQMYEQVLSVLTRSSN 853
|
|
| MCM3 |
cd17754 |
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in ... |
460-787 |
2.72e-70 |
|
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350660 [Multi-domain] Cd Length: 299 Bit Score: 234.28 E-value: 2.72e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 460 VKAGLALALFGGSQKyaDDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGD 539
Cdd:cd17754 16 IKKAILLMLLGGVEK--NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 540 FALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLK 618
Cdd:cd17754 94 RRLEAGAMVLADRGVVCIDEFDKMSDIDRvAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGRYDVYKTPMENIG 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 619 MGSALLSRFDLVFILLDTPNEHHDHLLSEHVIairagkqrtissatvaRMNSQdsntsvlevvsekplserlkvvpgeti 698
Cdd:cd17754 174 LPDSLLSRFDLLFIVLDDIDEERDRSISEHVL----------------RMHRY--------------------------- 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 699 dpipHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQ----SQRLNSSPITTRQLESLIRLTEARARLELREEATK 774
Cdd:cd17754 211 ----IKFLRKYIHYAKERIKPKLTQEAAEYIAEEYADLRNDdntkTDKARTSPITARTLETLIRLATAHAKARLSKTVDK 286
|
330
....*....|...
gi 1034625954 775 EDAEDIVEIMKYS 787
Cdd:cd17754 287 VDAEVALNLLRFA 299
|
|
| MCM_lid |
pfam17855 |
MCM AAA-lid domain; This entry represents the AAA-lid domain found in MCM proteins. |
704-788 |
8.53e-33 |
|
MCM AAA-lid domain; This entry represents the AAA-lid domain found in MCM proteins.
Pssm-ID: 465534 [Multi-domain] Cd Length: 86 Bit Score: 121.50 E-value: 8.53e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 704 QLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQS-QRLNSSPITTRQLESLIRLTEARARLELREEATKEDAEDIVE 782
Cdd:pfam17855 1 ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRKEStGSGSSIPITVRQLESLIRLSEAHAKMRLSEIVTEEDVEEAIR 80
|
....*.
gi 1034625954 783 IMKYSM 788
Cdd:pfam17855 81 LLKESL 86
|
|
| MCM8_WHD |
cd22247 |
winged-helix domain (WHD) found in minichromosome maintenance 8 (MCM8) and similar proteins; ... |
813-878 |
5.41e-31 |
|
winged-helix domain (WHD) found in minichromosome maintenance 8 (MCM8) and similar proteins; MCM8 is a DNA helicase that is a component of the MCM8-MCM9 complex, which is involved in the repair of double-stranded DNA breaks (DBSs) and DNA interstrand cross-links (ICLs) by homologous recombination (HR). The MCM8-MCM9 complex is also required for DNA resection by the MRE11-RAD50-NBN/NBS1 (MRN) complex by recruiting the MRN complex to the repair site and by promoting its nuclease activity. This model corresponds to the C-terminal winged-helix domain (WHD) of MCM8, which mediates protein-nucleic acid interaction, as well as protein-protein interaction.
Pssm-ID: 439328 [Multi-domain] Cd Length: 66 Bit Score: 115.66 E-value: 5.41e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034625954 813 RSTAKRFISALNNVAERTYNNIFQFHQLRQIAKELNIQVADFENFIGSLNDQGYLLKKGPKVYQLQ 878
Cdd:cd22247 1 RKQAKRFVSALQREAERKGNNLFTVDELKQIAKELGLQVDDFDDFIESLNNQGYLLKKGPNLYQLQ 66
|
|
| MCM_OB |
pfam17207 |
MCM OB domain; This family contains an OB-fold found within MCM proteins. This domain contains ... |
206-337 |
1.21e-30 |
|
MCM OB domain; This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif.
Pssm-ID: 465381 [Multi-domain] Cd Length: 126 Bit Score: 116.81 E-value: 1.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 206 QLKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQSFplpdgKYSLPTKCPVPVCRGR-SFTALRSspLTV 284
Cdd:pfam17207 1 SIRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVGV-----KITEPTKCPNPECGNKdPFKLVHE--KSK 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1034625954 285 TMDWQSIKIQElMSDDQReAGRIPRTIECELVHDLVDSCVPGDTVTITGIVKV 337
Cdd:pfam17207 74 FVDFQKIKIQE-SPEEVP-AGELPRSLDVILDDDLVDRVKPGDRVTVTGIYRV 124
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
475-633 |
5.57e-06 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 47.14 E-value: 5.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 475 YADDKNRIPIRGDPHILVVGDPGLGKSQMLQA-ACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQG 553
Cdd:cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAiANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 554 ICGIDEFDKMGNQ-HQALLEAMEQQSISLAKagvvcslPARTSIIAAANPvgghynkaktvSENLKMGSALLSRFDLVFI 632
Cdd:cd00009 87 VLFIDEIDSLSRGaQNALLRVLETLNDLRID-------RENVRVIGATNR-----------PLLGDLDRALYDRLDIRIV 148
|
.
gi 1034625954 633 L 633
Cdd:cd00009 149 I 149
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
489-800 |
2.27e-05 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 47.08 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 489 HILVVGDPGLGKSQMLQA---ACNVAPR--------------GVYVCgnttttsgltvtlskDSSSGDFALEAGAL---- 547
Cdd:COG0714 33 HLLLEGVPGVGKTTLAKAlarALGLPFIriqftpdllpsdilGTYIY---------------DQQTGEFEFRPGPLfanv 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 548 VLgdqgicgIDEFDKMGNQHQ-ALLEAMEQQSISLakAGVVCSLPARTSIIAAANPVggHYNKAKTVSEnlkmgsALLSR 626
Cdd:COG0714 98 LL-------ADEINRAPPKTQsALLEAMEERQVTI--PGGTYKLPEPFLVIATQNPI--EQEGTYPLPE------AQLDR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 627 FdLVFILLDTPNEhhdhllsEHVIAIRAGKQRTiSSATVARMNSQDSNTSVLEVVSEKPLSERLKvvpgetidpiphqll 706
Cdd:COG0714 161 F-LLKLYIGYPDA-------EEEREILRRHTGR-HLAEVEPVLSPEELLALQELVRQVHVSEAVL--------------- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 707 rkyiGYARQYVYprlsteAARVLQDFylelrkqsqRLNSSPittRQLESLIRLTEARARLELREEATKEDAEDI-VEIMK 785
Cdd:COG0714 217 ----DYIVDLVR------ATREHPDL---------RKGPSP---RASIALLRAARALALLDGRDYVTPDDVKAVaGPVLK 274
|
330
....*....|....*
gi 1034625954 786 YSMLGTYSDEFGNLD 800
Cdd:COG0714 275 HRLILSPEADAEGVT 289
|
|
| PRK09862 |
PRK09862 |
ATP-dependent protease; |
543-662 |
7.92e-04 |
|
ATP-dependent protease;
Pssm-ID: 182120 [Multi-domain] Cd Length: 506 Bit Score: 43.04 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034625954 543 EAGALVLGDQGICGIDEFDKMGNQH-QALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPV-GGHY--NKAKTVSENL- 617
Cdd:PRK09862 286 GPGEISLAHNGVLFLDELPEFERRTlDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSpTGHYqgNHNRCTPEQTl 365
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1034625954 618 ----KMGSALLSRFDLVF-ILLDTPNehhdhLLSEHVIAIRAG---KQRTISS 662
Cdd:PRK09862 366 rylnRLSGPFLDRFDLSLeIPLPPPG-----ILSKTVVPGESSatvKQRVMAA 413
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
490-519 |
1.13e-03 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 41.75 E-value: 1.13e-03
10 20 30
....*....|....*....|....*....|....
gi 1034625954 490 ILVVGDPGLGKSQ-MLQAACNVAPRG---VYVCG 519
Cdd:cd01121 85 VLIGGDPGIGKSTlLLQVAARLAQRGgkvLYVSG 118
|
|
| Sms |
COG1066 |
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
490-519 |
3.04e-03 |
|
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair];
Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 41.19 E-value: 3.04e-03
10 20 30
....*....|....*....|....*....|....
gi 1034625954 490 ILVVGDPGLGKSQ-MLQAACNVAPRG---VYVCG 519
Cdd:COG1066 92 VLIGGEPGIGKSTlLLQVAARLAKKGgkvLYVSG 125
|
|
| |
