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Conserved domains on  [gi|1039748780|ref|XP_017172077|]
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zinc finger RNA-binding protein isoform X4 [Mus musculus]

Protein Classification

ZnF_U1 and DZF domain-containing protein( domain architecture ID 13915102)

protein containing domains PHA03255, ZnF_U1, and DZF

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DZF smart00572
domain in DSRM or ZnF_C2H2 domain containing proteins;
740-994 4.99e-140

domain in DSRM or ZnF_C2H2 domain containing proteins;


:

Pssm-ID: 128842  Cd Length: 246  Bit Score: 419.47  E-value: 4.99e-140
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   740 ALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPekydikcavSEAAIILNSCVEPKMQV 819
Cdd:smart00572    1 TLKGVMRVGSFAKGTLLKGDNVAELVLLCKEKPTSELVARLARKLPEQLKAVTE---------DEALIIVTSTKEPTMEV 71

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   820 TITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFP 899
Cdd:smart00572   72 GILITSPLARVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQPLS 151

                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   900 SWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAF 979
Cdd:smart00572  152 GWPLELLVEKAIGSARQPLGLGDAFRRVFECLASGILLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAF 231

                           250
                    ....*....|....*
gi 1039748780   980 RQIHKVLGMDPLPQM 994
Cdd:smart00572  232 GQIHKILGMDPLPSM 246
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 537-568 6.69e-08

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 49.17  E-value: 6.69e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1039748780   537 RFHCKLCECSFNDPNAKEMHLKGRRHRLQYKK 568
Cdd:smart00451    3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 287-316 5.03e-07

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 46.86  E-value: 5.03e-07
                            10        20        30
                    ....*....|....*....|....*....|
gi 1039748780   287 HYCDVCKISCAGPQTYKEHLEGQKHKKKEA 316
Cdd:smart00451    4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 340-369 5.78e-06

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 43.78  E-value: 5.78e-06
                            10        20        30
                    ....*....|....*....|....*....|
gi 1039748780   340 CELCDVSCTGADAYAAHIRGAKHQKVVKLH 369
Cdd:smart00451    6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PHA03255 super family cl31530
BDLF3; Provisional
 338-507 1.60e-03

BDLF3; Provisional


The actual alignment was detected with superfamily member PHA03255:

Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 41.43  E-value: 1.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  338 LRCE--LCDVSCTGADAYAAHIRGAkhqkvvklhTKLGKPIPSTEPNVVSQATSSTAasaskpTASP---SSIGASNCTL 412
Cdd:PHA03255    16 LICEtsLIWTSSGSSTASAGNVTGT---------TAVTTPSPSASGPSTNQSTTLTT------TSAPittTAILSTNTTT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  413 NTSSiaTSSVKGLSTTGN-SSLNSTSNTKVSAIPTNMAAKKTSTPKINfvgGNKLQSTGNKTEDLKGIDCVKNTPAASAV 491
Cdd:PHA03255    81 VTST--GTTVTPVPTTSNaSTINVTTKVTAQNITATEAGTGTSTGVTS---NVTTRSSSTTSATTRITNATTLAPTLSSK 155

                          170
                   ....*....|....*.
gi 1039748780  492 QIPEVKQDAGSEPVTP 507
Cdd:PHA03255   156 GTSNATKTTAELPTVP 171
 
Name Accession Description Interval E-value
DZF smart00572
domain in DSRM or ZnF_C2H2 domain containing proteins;
740-994 4.99e-140

domain in DSRM or ZnF_C2H2 domain containing proteins;


Pssm-ID: 128842  Cd Length: 246  Bit Score: 419.47  E-value: 4.99e-140
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   740 ALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPekydikcavSEAAIILNSCVEPKMQV 819
Cdd:smart00572    1 TLKGVMRVGSFAKGTLLKGDNVAELVLLCKEKPTSELVARLARKLPEQLKAVTE---------DEALIIVTSTKEPTMEV 71

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   820 TITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFP 899
Cdd:smart00572   72 GILITSPLARVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQPLS 151

                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   900 SWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAF 979
Cdd:smart00572  152 GWPLELLVEKAIGSARQPLGLGDAFRRVFECLASGILLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAF 231

                           250
                    ....*....|....*
gi 1039748780   980 RQIHKVLGMDPLPQM 994
Cdd:smart00572  232 GQIHKILGMDPLPSM 246
DZF pfam07528
DZF domain; The function of this domain is unknown. It is often found associated with ...
 746-992 1.08e-74

DZF domain; The function of this domain is unknown. It is often found associated with pfam00098 or pfam00035. This domain has been predicted to belong to the nucleotidyltransferase superfamily.


Pssm-ID: 284860  Cd Length: 248  Bit Score: 246.33  E-value: 1.08e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  746 RVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPekyDIKCAVSEAAIILNSCVEPKMQVTITLTS 825
Cdd:pfam07528    1 QVGSFKKGTLLKGSNVADVVVILKTLPTTELVDALAKKVEEDLKTSMK---TEILQSVEALIVIKNTKEPPLELGFHITS 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  826 PIIRE--------ENMRegdvtsgmVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSD 897
Cdd:pfam07528   78 PVAKVrmliatlpENLR--------KLEPEDHLDRKKMQSHLASIRHTRWFEENAHHLKSIKVLIRVLKDLCRRFDTFGP 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  898 FPSWAMELLVEKAISSASSPQS--PGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALR 975
Cdd:pfam07528  150 LSGWPLDLLAHKAIMNNPSRQAlpAGEAFRRVFELLASGIFLPGSAGITDPCEKGHTRVHTHLTLQQQDDCCMTAQTLLR 229

                          250
                   ....*....|....*..
gi 1039748780  976 LLAFRQIHKVLGMDPLP 992
Cdd:pfam07528  230 VLAHGGYKHILGMDGNT 246
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 537-568 6.69e-08

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 49.17  E-value: 6.69e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1039748780   537 RFHCKLCECSFNDPNAKEMHLKGRRHRLQYKK 568
Cdd:smart00451    3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 287-316 5.03e-07

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 46.86  E-value: 5.03e-07
                            10        20        30
                    ....*....|....*....|....*....|
gi 1039748780   287 HYCDVCKISCAGPQTYKEHLEGQKHKKKEA 316
Cdd:smart00451    4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 340-369 5.78e-06

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 43.78  E-value: 5.78e-06
                            10        20        30
                    ....*....|....*....|....*....|
gi 1039748780   340 CELCDVSCTGADAYAAHIRGAKHQKVVKLH 369
Cdd:smart00451    6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 538-562 5.13e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.94  E-value: 5.13e-05
                           10        20
                   ....*....|....*....|....*
gi 1039748780  538 FHCKLCECSFNDPNAKEMHLKGRRH 562
Cdd:pfam12874    1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 288-311 6.00e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.94  E-value: 6.00e-05
                           10        20
                   ....*....|....*....|....
gi 1039748780  288 YCDVCKISCAGPQTYKEHLEGQKH 311
Cdd:pfam12874    2 YCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 338-362 1.91e-04

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 39.40  E-value: 1.91e-04
                           10        20
                   ....*....|....*....|....*
gi 1039748780  338 LRCELCDVSCTGADAYAAHIRGAKH 362
Cdd:pfam12874    1 FYCELCNVTFNSESQLKSHLQGKKH 25
PHA03255 PHA03255
BDLF3; Provisional
 338-507 1.60e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 41.43  E-value: 1.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  338 LRCE--LCDVSCTGADAYAAHIRGAkhqkvvklhTKLGKPIPSTEPNVVSQATSSTAasaskpTASP---SSIGASNCTL 412
Cdd:PHA03255    16 LICEtsLIWTSSGSSTASAGNVTGT---------TAVTTPSPSASGPSTNQSTTLTT------TSAPittTAILSTNTTT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  413 NTSSiaTSSVKGLSTTGN-SSLNSTSNTKVSAIPTNMAAKKTSTPKINfvgGNKLQSTGNKTEDLKGIDCVKNTPAASAV 491
Cdd:PHA03255    81 VTST--GTTVTPVPTTSNaSTINVTTKVTAQNITATEAGTGTSTGVTS---NVTTRSSSTTSATTRITNATTLAPTLSSK 155

                          170
                   ....*....|....*.
gi 1039748780  492 QIPEVKQDAGSEPVTP 507
Cdd:PHA03255   156 GTSNATKTTAELPTVP 171
 
Name Accession Description Interval E-value
DZF smart00572
domain in DSRM or ZnF_C2H2 domain containing proteins;
740-994 4.99e-140

domain in DSRM or ZnF_C2H2 domain containing proteins;


Pssm-ID: 128842  Cd Length: 246  Bit Score: 419.47  E-value: 4.99e-140
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   740 ALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPekydikcavSEAAIILNSCVEPKMQV 819
Cdd:smart00572    1 TLKGVMRVGSFAKGTLLKGDNVAELVLLCKEKPTSELVARLARKLPEQLKAVTE---------DEALIIVTSTKEPTMEV 71

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   820 TITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFP 899
Cdd:smart00572   72 GILITSPLARVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQPLS 151

                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780   900 SWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAF 979
Cdd:smart00572  152 GWPLELLVEKAIGSARQPLGLGDAFRRVFECLASGILLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAF 231

                           250
                    ....*....|....*
gi 1039748780   980 RQIHKVLGMDPLPQM 994
Cdd:smart00572  232 GQIHKILGMDPLPSM 246
DZF pfam07528
DZF domain; The function of this domain is unknown. It is often found associated with ...
 746-992 1.08e-74

DZF domain; The function of this domain is unknown. It is often found associated with pfam00098 or pfam00035. This domain has been predicted to belong to the nucleotidyltransferase superfamily.


Pssm-ID: 284860  Cd Length: 248  Bit Score: 246.33  E-value: 1.08e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  746 RVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPekyDIKCAVSEAAIILNSCVEPKMQVTITLTS 825
Cdd:pfam07528    1 QVGSFKKGTLLKGSNVADVVVILKTLPTTELVDALAKKVEEDLKTSMK---TEILQSVEALIVIKNTKEPPLELGFHITS 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  826 PIIRE--------ENMRegdvtsgmVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSD 897
Cdd:pfam07528   78 PVAKVrmliatlpENLR--------KLEPEDHLDRKKMQSHLASIRHTRWFEENAHHLKSIKVLIRVLKDLCRRFDTFGP 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  898 FPSWAMELLVEKAISSASSPQS--PGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALR 975
Cdd:pfam07528  150 LSGWPLDLLAHKAIMNNPSRQAlpAGEAFRRVFELLASGIFLPGSAGITDPCEKGHTRVHTHLTLQQQDDCCMTAQTLLR 229

                          250
                   ....*....|....*..
gi 1039748780  976 LLAFRQIHKVLGMDPLP 992
Cdd:pfam07528  230 VLAHGGYKHILGMDGNT 246
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 537-568 6.69e-08

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 49.17  E-value: 6.69e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1039748780   537 RFHCKLCECSFNDPNAKEMHLKGRRHRLQYKK 568
Cdd:smart00451    3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 287-316 5.03e-07

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 46.86  E-value: 5.03e-07
                            10        20        30
                    ....*....|....*....|....*....|
gi 1039748780   287 HYCDVCKISCAGPQTYKEHLEGQKHKKKEA 316
Cdd:smart00451    4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 340-369 5.78e-06

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 43.78  E-value: 5.78e-06
                            10        20        30
                    ....*....|....*....|....*....|
gi 1039748780   340 CELCDVSCTGADAYAAHIRGAKHQKVVKLH 369
Cdd:smart00451    6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 538-562 5.13e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.94  E-value: 5.13e-05
                           10        20
                   ....*....|....*....|....*
gi 1039748780  538 FHCKLCECSFNDPNAKEMHLKGRRH 562
Cdd:pfam12874    1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 288-311 6.00e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.94  E-value: 6.00e-05
                           10        20
                   ....*....|....*....|....
gi 1039748780  288 YCDVCKISCAGPQTYKEHLEGQKH 311
Cdd:pfam12874    2 YCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 338-362 1.91e-04

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 39.40  E-value: 1.91e-04
                           10        20
                   ....*....|....*....|....*
gi 1039748780  338 LRCELCDVSCTGADAYAAHIRGAKH 362
Cdd:pfam12874    1 FYCELCNVTFNSESQLKSHLQGKKH 25
PHA03255 PHA03255
BDLF3; Provisional
 338-507 1.60e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 41.43  E-value: 1.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  338 LRCE--LCDVSCTGADAYAAHIRGAkhqkvvklhTKLGKPIPSTEPNVVSQATSSTAasaskpTASP---SSIGASNCTL 412
Cdd:PHA03255    16 LICEtsLIWTSSGSSTASAGNVTGT---------TAVTTPSPSASGPSTNQSTTLTT------TSAPittTAILSTNTTT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039748780  413 NTSSiaTSSVKGLSTTGN-SSLNSTSNTKVSAIPTNMAAKKTSTPKINfvgGNKLQSTGNKTEDLKGIDCVKNTPAASAV 491
Cdd:PHA03255    81 VTST--GTTVTPVPTTSNaSTINVTTKVTAQNITATEAGTGTSTGVTS---NVTTRSSSTTSATTRITNATTLAPTLSSK 155

                          170
                   ....*....|....*.
gi 1039748780  492 QIPEVKQDAGSEPVTP 507
Cdd:PHA03255   156 GTSNATKTTAELPTVP 171
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 537-563 2.46e-03

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 36.38  E-value: 2.46e-03
                           10        20
                   ....*....|....*....|....*..
gi 1039748780  537 RFHCKLCECSFNDPNAKEMHLKGRRHR 563
Cdd:pfam12171    1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 287-312 2.74e-03

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 35.99  E-value: 2.74e-03
                           10        20
                   ....*....|....*....|....*.
gi 1039748780  287 HYCDVCKISCAGPQTYKEHLEGQKHK 312
Cdd:pfam12171    2 FYCVLCDKYFKSENALQNHLKSKKHK 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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