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Conserved domains on  [gi|1046889537|ref|XP_017449121|]
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intraflagellar transport protein 25 homolog isoform X2 [Rattus norvegicus]

Protein Classification

discoidin domain-containing protein( domain architecture ID 10465410)

discoidin domain-containing protein similar to intraflagellar transport protein 25 (IFT25) that links signal-dependent movement of Hedgehog components to intraflagellar transport and to Clostridium perfringens family 31 glycoside hydrolase

CATH:  2.60.120.260
Gene Ontology:  GO:0030246
PubMed:  9684896|17702679
SCOP:  4002466

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
F5_F8_type_C pfam00754
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
 29-135 1.19e-04

F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.


:

Pssm-ID: 459925 [Multi-domain]  Cd Length: 127  Bit Score: 39.74  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046889537  29 TSSDEKHPPENIIDGNPETFWTTTGMFPQEFI-ICFHKHVKIEKLVIQ------SYLVRTLRIEktTSkepLDFEQWVEK 101
Cdd:pfam00754   6 SSYSGEGPAAAALDGDPNTAWSAWSGDDPQWIqVDLGKPKKITGVVTQgrqdgsNGYVTSYKIE--YS---LDGENWTTV 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1046889537 102 DLVHTEGQLQNEEIMARD----GYATFLRFIIVSAFDH 135
Cdd:pfam00754  81 KDEKIPGNNDNNTPVTNTfdppIKARYVRIVPTSWNGG 118
 
Name Accession Description Interval E-value
F5_F8_type_C pfam00754
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
 29-135 1.19e-04

F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.


Pssm-ID: 459925 [Multi-domain]  Cd Length: 127  Bit Score: 39.74  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046889537  29 TSSDEKHPPENIIDGNPETFWTTTGMFPQEFI-ICFHKHVKIEKLVIQ------SYLVRTLRIEktTSkepLDFEQWVEK 101
Cdd:pfam00754   6 SSYSGEGPAAAALDGDPNTAWSAWSGDDPQWIqVDLGKPKKITGVVTQgrqdgsNGYVTSYKIE--YS---LDGENWTTV 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1046889537 102 DLVHTEGQLQNEEIMARD----GYATFLRFIIVSAFDH 135
Cdd:pfam00754  81 KDEKIPGNNDNNTPVTNTfdppIKARYVRIVPTSWNGG 118
 
Name Accession Description Interval E-value
F5_F8_type_C pfam00754
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
 29-135 1.19e-04

F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.


Pssm-ID: 459925 [Multi-domain]  Cd Length: 127  Bit Score: 39.74  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046889537  29 TSSDEKHPPENIIDGNPETFWTTTGMFPQEFI-ICFHKHVKIEKLVIQ------SYLVRTLRIEktTSkepLDFEQWVEK 101
Cdd:pfam00754   6 SSYSGEGPAAAALDGDPNTAWSAWSGDDPQWIqVDLGKPKKITGVVTQgrqdgsNGYVTSYKIE--YS---LDGENWTTV 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1046889537 102 DLVHTEGQLQNEEIMARD----GYATFLRFIIVSAFDH 135
Cdd:pfam00754  81 KDEKIPGNNDNNTPVTNTfdppIKARYVRIVPTSWNGG 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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