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Conserved domains on  [gi|1046901285|ref|XP_017451387|]
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secretory carrier-associated membrane protein 5 isoform X1 [Rattus norvegicus]

Protein Classification

secretory carrier-associated membrane protein( domain architecture ID 10514244)

secretory carrier-associated membrane protein (SCAMP) probably functions in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats, but may also have additional functions mediated by their other sequences

Gene Ontology:  GO:0015031|GO:0006892
PubMed:  21633931
TCDB:  8.A.103

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SCAMP pfam04144
SCAMP family; In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a ...
 6-179 9.06e-64

SCAMP family; In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences.


:

Pssm-ID: 461193  Cd Length: 172  Bit Score: 196.22  E-value: 9.06e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046901285   6 NNFPPLpkfiplKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCLAWLIGGG--GATNFGLAFLWLILFTP 83
Cdd:pfam04144   2 NNWPPF------KPCFYHDIEEEIPEEFQRLVKLAYYLWLLLTLTLFLNFIACLALFIGGGsgGGAFLGLSILYLLLFTP 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046901285  84 CSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFF-GTNIGSAVVMLIPTVMFTVVA 162
Cdd:pfam04144  76 LSFVLWYRPLYKAFRKDSSFNFFVFFFVFFFHLAFCIIQAIGIPGWGSCGWITAISLFaSGNIAVGILMLISAILFTLEA 155

                         170
                  ....*....|....*..
gi 1046901285 163 VFSFIALSMVHKFYRGS 179
Cdd:pfam04144 156 VLSLWLLKKVHRYYRGT 172
 
Name Accession Description Interval E-value
SCAMP pfam04144
SCAMP family; In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a ...
 6-179 9.06e-64

SCAMP family; In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences.


Pssm-ID: 461193  Cd Length: 172  Bit Score: 196.22  E-value: 9.06e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046901285   6 NNFPPLpkfiplKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCLAWLIGGG--GATNFGLAFLWLILFTP 83
Cdd:pfam04144   2 NNWPPF------KPCFYHDIEEEIPEEFQRLVKLAYYLWLLLTLTLFLNFIACLALFIGGGsgGGAFLGLSILYLLLFTP 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046901285  84 CSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFF-GTNIGSAVVMLIPTVMFTVVA 162
Cdd:pfam04144  76 LSFVLWYRPLYKAFRKDSSFNFFVFFFVFFFHLAFCIIQAIGIPGWGSCGWITAISLFaSGNIAVGILMLISAILFTLEA 155

                         170
                  ....*....|....*..
gi 1046901285 163 VFSFIALSMVHKFYRGS 179
Cdd:pfam04144 156 VLSLWLLKKVHRYYRGT 172
 
Name Accession Description Interval E-value
SCAMP pfam04144
SCAMP family; In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a ...
 6-179 9.06e-64

SCAMP family; In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences.


Pssm-ID: 461193  Cd Length: 172  Bit Score: 196.22  E-value: 9.06e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046901285   6 NNFPPLpkfiplKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCLAWLIGGG--GATNFGLAFLWLILFTP 83
Cdd:pfam04144   2 NNWPPF------KPCFYHDIEEEIPEEFQRLVKLAYYLWLLLTLTLFLNFIACLALFIGGGsgGGAFLGLSILYLLLFTP 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046901285  84 CSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFF-GTNIGSAVVMLIPTVMFTVVA 162
Cdd:pfam04144  76 LSFVLWYRPLYKAFRKDSSFNFFVFFFVFFFHLAFCIIQAIGIPGWGSCGWITAISLFaSGNIAVGILMLISAILFTLEA 155

                         170
                  ....*....|....*..
gi 1046901285 163 VFSFIALSMVHKFYRGS 179
Cdd:pfam04144 156 VLSLWLLKKVHRYYRGT 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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