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Conserved domains on  [gi|1162439317|ref|XP_020405138|]
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protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Zea mays]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14298 super family cl32989
chaperone protein DnaJ; Provisional
 121-176 4.44e-08

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK14298:

Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 52.16  E-value: 4.44e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14298  144 CSTCSGTGAkpgtspKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIespCPVCSGTG 208
PRK14293 super family cl36361
molecular chaperone DnaJ;
82-139 2.00e-04

molecular chaperone DnaJ;


The actual alignment was detected with superfamily member PRK14293:

Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 41.13  E-value: 2.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1162439317  82 SSRRRCLVCLGAVTLISATGPPNGLAAdamnkagvQKAVCRNCNGSGAVI---CDMCGGTG 139
Cdd:PRK14293  158 TGPTTCSTCGGAGQVRRATRTPFGSFT--------QVSECPTCNGTGQVIedpCDACGGQG 210
 
Name Accession Description Interval E-value
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 121-176 4.44e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 52.16  E-value: 4.44e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14298  144 CSTCSGTGAkpgtspKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIespCPVCSGTG 208
DnaJ_zf cd10719
Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of ...
 121-176 2.83e-05

Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.


Pssm-ID: 199908 [Multi-domain]  Cd Length: 65  Bit Score: 40.70  E-value: 2.83e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:cd10719     1 CPTCNGSGAkpgtkpKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIkdpCPKCKGKG 65
DnaJ_CXXCXGXG pfam00684
DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four ...
 121-176 7.11e-05

DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found.


Pssm-ID: 459904 [Multi-domain]  Cd Length: 65  Bit Score: 39.46  E-value: 7.11e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:pfam00684   1 CPTCNGSGAkpgtkpTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKIIkdpCKKCKGKG 65
PRK14293 PRK14293
molecular chaperone DnaJ;
82-139 2.00e-04

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 41.13  E-value: 2.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1162439317  82 SSRRRCLVCLGAVTLISATGPPNGLAAdamnkagvQKAVCRNCNGSGAVI---CDMCGGTG 139
Cdd:PRK14293  158 TGPTTCSTCGGAGQVRRATRTPFGSFT--------QVSECPTCNGTGQVIedpCDACGGQG 210
 
Name Accession Description Interval E-value
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 121-176 4.44e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 52.16  E-value: 4.44e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14298  144 CSTCSGTGAkpgtspKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIespCPVCSGTG 208
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 117-176 5.52e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 51.86  E-value: 5.52e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162439317 117 QKAVCRNCNGSGA-----VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL---VCPVCLGTG 176
Cdd:PRK14290  148 RNAMCPDCSGTGAkngklITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIpeeKCPRCNGTG 215
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 119-176 1.17e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 50.86  E-value: 1.17e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1162439317 119 AVCRNCNGSGA------VICDMCGGTG-----KWKALNRKRAKdvyefTECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14276  147 ATCHTCNGSGAkpgtspVTCGKCHGSGvitvdTQTPLGMMRRQ-----VTCDVCHGTGKEIkepCQTCHGTG 213
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 120-176 1.91e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 47.35  E-value: 1.91e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1162439317 120 VCRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14278  141 LCDRCHGKGTagdskpVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIpdpCHECAGDG 206
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 121-177 2.35e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 46.91  E-value: 2.35e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKalnrkRAKDVYEF-TECPNCYGRGKLV---CPVCLGTGL 177
Cdd:PRK14286  153 CVDCNGSGAskgsspTTCPDCGGSGQIR-----RTQGFFSVaTTCPTCRGKGTVIsnpCKTCGGQGL 214
PLN03165 PLN03165
chaperone protein dnaJ-related; Provisional
 121-177 2.51e-06

chaperone protein dnaJ-related; Provisional


Pssm-ID: 178709 [Multi-domain]  Cd Length: 111  Bit Score: 44.81  E-value: 2.51e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1162439317 121 CRNCNGSGAVICDMCGGTGkwkALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGL 177
Cdd:PLN03165   44 CFPCSGTGAQVCRFCVGSG---NVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGI 97
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 121-176 3.62e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 46.29  E-value: 3.62e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGkwkalnRKRAKDVYeFT---ECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK10767  145 CDTCHGSGAkpgtspKTCPTCHGAG------QVRMQQGF-FTvqqTCPTCHGRGKIIkdpCKKCHGQG 205
PRK14293 PRK14293
molecular chaperone DnaJ;
120-176 3.88e-06

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 46.52  E-value: 3.88e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1162439317 120 VCRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14293  145 TCETCRGSGAkpgtgpTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIedpCDACGGQG 210
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 115-177 6.51e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 45.95  E-value: 6.51e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162439317 115 GVQKA-------VCRNCNGSGAV-----ICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGL 177
Cdd:PRK14281  153 GVEKTlkikkqvPCKECNGTGSKtgateTCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVkdrCPACYGEGI 230
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 117-177 2.21e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 44.05  E-value: 2.21e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162439317 117 QKAVCRNCNGS------GAVICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGL 177
Cdd:PRK14283  145 HTKKCPVCNGSraepgsEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVekpCSNCHGKGV 214
DnaJ_zf cd10719
Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of ...
 121-176 2.83e-05

Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.


Pssm-ID: 199908 [Multi-domain]  Cd Length: 65  Bit Score: 40.70  E-value: 2.83e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:cd10719     1 CPTCNGSGAkpgtkpKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIkdpCPKCKGKG 65
PRK14280 PRK14280
molecular chaperone DnaJ;
121-176 2.90e-05

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 43.94  E-value: 2.90e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKA-----LNRKRAKDVyefteCPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14280  146 CDTCHGSGAkpgtskETCSHCGGSGQVSVeqntpFGRVVNRQT-----CPHCNGTGQEIkekCPTCHGKG 210
PRK14289 PRK14289
molecular chaperone DnaJ;
113-177 3.56e-05

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 43.67  E-value: 3.56e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162439317 113 KAGVQKAV-CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGL 177
Cdd:PRK14289  148 KFKVKKYVpCSHCHGTGAegnngsETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIkkkCKKCGGEGI 222
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 116-176 3.75e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 43.60  E-value: 3.75e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1162439317 116 VQK-AVCRNCNGSGA------VICDMCGGTGKWKalnrkRAKDVYEF-TECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14294  141 IQKlETCEECHGSGCepgtspTTCPQCGGSGQVT-----QSQGFFSIrTTCPRCRGMGKVIvspCKTCHGQG 207
DnaJ_CXXCXGXG pfam00684
DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four ...
 121-176 7.11e-05

DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found.


Pssm-ID: 459904 [Multi-domain]  Cd Length: 65  Bit Score: 39.46  E-value: 7.11e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162439317 121 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:pfam00684   1 CPTCNGSGAkpgtkpTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKIIkdpCKKCKGKG 65
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 117-176 1.16e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 42.04  E-value: 1.16e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162439317 117 QKAVCRNCNGSGAV------ICDMCGGTGKwkalnRKRAKDVYEF-TECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14301  143 KNVTCDDCGGSGAApgtspeTCRHCGGSGQ-----VRQSQGFFQIaVPCPVCRGEGRVIthpCPKCKGSG 207
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 112-176 1.31e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 41.90  E-value: 1.31e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162439317 112 NKAGVQKAVCRNCNGSGAVicdMCGGtGKWKALnrkrakdvyefTECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14285  157 SEKGTSPSICNMCNGSGRV---MQGG-GFFRVT-----------TTCPKCYGNGKIIsnpCKSCKGKG 209
PRK14279 PRK14279
molecular chaperone DnaJ;
119-176 1.94e-04

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 41.26  E-value: 1.94e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162439317 119 AVCRNCNGSGA------VICDMCGGTGkwkALNRKRAkdVYEFTE-CPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14279  174 APCTTCHGSGArpgtspKVCPTCNGSG---VISRNQG--AFGFSEpCTDCRGTGSIIedpCEECKGTG 236
PRK14293 PRK14293
molecular chaperone DnaJ;
82-139 2.00e-04

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 41.13  E-value: 2.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1162439317  82 SSRRRCLVCLGAVTLISATGPPNGLAAdamnkagvQKAVCRNCNGSGAVI---CDMCGGTG 139
Cdd:PRK14293  158 TGPTTCSTCGGAGQVRRATRTPFGSFT--------QVSECPTCNGTGQVIedpCDACGGQG 210
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 120-176 2.04e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 41.41  E-value: 2.04e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1162439317 120 VCRNCNGS-------GAVICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14292  141 ECEHCHGSrtepggkPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIItdpCTVCRGRG 207
PRK14280 PRK14280
molecular chaperone DnaJ;
113-166 3.91e-04

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 40.48  E-value: 3.91e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162439317 113 KAGVQKAVCRNCNGSGAV---------------ICDMCGGTGKwkalnrkrakdvyEFTE-CPNCYGRGK 166
Cdd:PRK14280  155 KPGTSKETCSHCGGSGQVsveqntpfgrvvnrqTCPHCNGTGQ-------------EIKEkCPTCHGKGK 211
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 120-176 6.66e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 39.78  E-value: 6.66e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1162439317 120 VCRNCNG------SGAVICDMCGGTGKWKALNRK-RAKDVYEFTeCPNCYGRGKL---VCPVCLGTG 176
Cdd:PRK14282  154 TCPHCGGtgvepgSGYVTCPKCHGTGRIREERRSfFGVFVSERT-CERCGGTGKIpgeYCHECGGSG 219
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 120-177 1.79e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 38.60  E-value: 1.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1162439317 120 VCRNCNG------SGAVICDMCGGTGKwkalNRKRAKDVYEFTECPNCYGRGKL--VCPVCLGTGL 177
Cdd:PRK14291  158 PCEACGGtgydpgSGEKVCPTCGGSGE----IYQRGGFFRISQTCPTCGGEGVLrePCSKCNGRGL 219
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 119-181 1.93e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 38.29  E-value: 1.93e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1162439317 119 AVCRNCNGSGAV------ICDMCGGTGKwkaLNRKRAKDVYEFTeCPNCYGRGKLV---CPVCLGTGLPNNK 181
Cdd:PRK14284  159 KSCDACSGSGANssqgikVCDRCKGSGQ---VVQSRGFFSMAST-CPECGGEGRVItdpCSVCRGQGRIKDK 226
PRK14295 PRK14295
molecular chaperone DnaJ;
113-176 1.94e-03

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 38.29  E-value: 1.94e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162439317 113 KAGVQKAVCRNCNGSGAVICDMCGgtgkwkalnrkrakdvYEFTE-CPNCYGRGKLV---CPVCLGTG 176
Cdd:PRK14295  178 KNGTTPRVCPTCSGTGQVSRNSGG----------------FSLSEpCPDCKGRGLIAddpCLVCKGSG 229
PRK14297 PRK14297
molecular chaperone DnaJ;
76-166 2.60e-03

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 37.84  E-value: 2.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162439317  76 EKETTPSSRRRCLVClgavtlisatgppNGLAAdamnKAGVQKAVCRNCNGSGAV---------------ICDMCGGTGK 140
Cdd:PRK14297  140 EKEISVTRNENCETC-------------NGTGA----KPGTSPKTCDKCGGTGQIrvqrntplgsfvsttTCDKCGGSGK 202

                          90       100
                  ....*....|....*....|....*.
gi 1162439317 141 wkalnrkrakdVYEfTECPNCYGRGK 166
Cdd:PRK14297  203 -----------VIE-DPCNKCHGKGK 216
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 130-176 4.72e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 37.06  E-value: 4.72e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1162439317 130 VICDMCGGTGKwkalnrKRAKDVyefTECPNCYGRGKLV-----------CPVCLGTG 176
Cdd:PRK14291  157 VPCEACGGTGY------DPGSGE---KVCPTCGGSGEIYqrggffrisqtCPTCGGEG 205
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 120-166 5.20e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 37.23  E-value: 5.20e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1162439317 120 VCRNCNGSGAVI---------------CDMCGGTGKwkalnrkrakdvyEF-TECPNCYGRGK 166
Cdd:PRK14296  168 ICNNCHGTGEVLvqknmgffqfqqsakCNVCNGAGK-------------IIkNKCKNCKGKGK 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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