|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
205-269 |
6.04e-36 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 129.83 E-value: 6.04e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207177220 205 VGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 269
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
205-269 |
5.37e-29 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 110.37 E-value: 5.37e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207177220 205 VGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 269
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
74-138 |
6.20e-28 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 107.10 E-value: 6.20e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207177220 74 VGERVWVNGVKPGVIAYLGETQFSPGQWAGVVLNDLVGKNDGSVNGVRYFECQALQGIFTRPSKL 138
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
74-139 |
9.63e-25 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 98.04 E-value: 9.63e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207177220 74 VGERVWVNG-VKPGVIAYLGETQFSPGQWAGVVL-NDLVGKNDGSVNGVRYFECQALQGIFTRPSKLT 139
Cdd:smart01052 1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELdEPLRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
340-994 |
4.10e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.12 E-value: 4.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 340 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATET---ESNLQQVRAMLASTQKDKMELA 416
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrlEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 417 NQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEEL 496
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 497 ALRKAEVEELQVRFQRGSS-------------GSATDAEDGEPGITSETLVLR----EQLLSVGRERREESSQLRERYEA 559
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQeieellkkleeaeLKELQAELEELEEELEELQEElerlEEALEELREELEEAEQALDAAER 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 560 SLSTSQKEIERLKAITERQGQEISDLKQRLQQATR---------ENMEMMDSWKAKLDALVGDH------------QRAL 618
Cdd:TIGR02168 483 ELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlsELISVDEGYEAAIEAALGGRlqavvvenlnaaKKAI 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 619 EELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVmakerEDLRSRL---QELRDQLED 695
Cdd:TIGR02168 563 AFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL-----SYLLGGVlvvDDLDNALEL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 696 S---EENWKIQV---------------ETKSNQHTL----EIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLA 753
Cdd:TIGR02168 638 AkklRPGYRIVTldgdlvrpggvitggSAKTNSSILerrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 754 EKKMVDYE----ALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLtkr 829
Cdd:TIGR02168 718 RKELEELSrqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL--- 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 830 EKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNElrvl 909
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE---- 870
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 910 lLESPRHSAGVDRDlSREVHRAEWRMKEQKLQDDIKTLREKLLLLGRERLSPDHRRysmmdpSASDTEVARLRQRLLNTE 989
Cdd:TIGR02168 871 -LESELEALLNERA-SLEEALALLRSELEELSEELRELESKRSELRRELEELREKL------AQLELRLEGLEVRIDNLQ 942
|
....*
gi 1207177220 990 DALRN 994
Cdd:TIGR02168 943 ERLSE 947
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
345-904 |
1.16e-17 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 88.64 E-value: 1.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 345 LKEKQQHIEQLLAERDLE------RAEVAKATSHICEVEKELAALKAR-----HLQYATETESNLQQVRAMLASTQK--- 410
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglteKASSARSQANSIQSQLEIIQEQARnqnsmYMRQLSDLESTVSQLRSELREAKRmye 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 411 DKME-LANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLqkeLEEKMQTTVEektrV 489
Cdd:pfam15921 342 DKIEeLEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL---WDRDTGNSIT----I 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 490 MQLEEELALRKAEVEELQVRFQRGSSGSATDAEDGEPGITSETlvlreqllsvgrERREESSQLRERYEASLSTSQKEIE 569
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKN------------ESLEKVSSLTAQLESTKEMLRKVVE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 570 RL---KAITERQGQEISDLKQRLQQATREnMEMMDSWKAKLDALVGDHQRALEELKA------SLTTDCGSGEINGGEGE 640
Cdd:pfam15921 483 ELtakKMTLESSERTVSDLTASLQEKERA-IEATNAEITKLRSRVDLKLQELQHLKNegdhlrNVQTECEALKLQMAEKD 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 641 GSLPEMRAALEGLKmehqleleNLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDseenWKIQVETKSNQhtleIKEVSE 720
Cdd:pfam15921 562 KVIEILRQQIENMT--------QLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE----FKILKDKKDAK----IRELEA 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 721 KLQKAELRIVDLDKSQEEREKVNQLLKEQ--LMLAEKKMV---------DYEALQKAEAQSRAEILSLQEKLRVTENRLQ 789
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAVKDIKQErdQLLNEVKTSrnelnslseDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 790 AvEADHTTQDVNMIENNDNSDEKVKLKQnveetlekltkrEKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKT 869
Cdd:pfam15921 706 S-ELEQTRNTLKSMEGSDGHAMKVAMGM------------QKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKN 772
|
570 580 590
....*....|....*....|....*....|....*.
gi 1207177220 870 RLEAELETMTKKSHDASGQL-VNISQELLKKERSLN 904
Cdd:pfam15921 773 KLSQELSTVATEKNKMAGELeVLRSQERRLKEKVAN 808
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
341-985 |
4.08e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 4.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 341 LQEALKEKQQHIEQLLAERDLERAEVAKAtshicevEKELAALKARhlqyATETESNLQQVRAMLASTQKDKMELANQLE 420
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEEL-------EAELEELESR----LEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 421 EEKRKVEDLQFRVEEESITKGDL-----ETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEE 495
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELlkkleEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 496 LALRKAEVEELQVRFQRGSSGSATDAEdgepgitsetLVLREQLLSVGRERREESSQLRERYEASLSTSQKEieRLKAIT 575
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGVKA----------LLKNQSGLSGILGVLSELISVDEGYEAAIEAALGG--RLQAVV 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 576 ----ERQGQEISDLKQrlQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSL-------P 644
Cdd:TIGR02168 552 venlNAAKKAIAFLKQ--NELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvD 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 645 EMRAALEGLKMEHQL------------------------------------ELENLKAKHEIDAAVMAKEREDLRSRLQE 688
Cdd:TIGR02168 630 DLDNALELAKKLRPGyrivtldgdlvrpggvitggsaktnssilerrreieELEEKIEELEEKIAELEKALAELRKELEE 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 689 LRDQLEDSEENWkIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVdyEALQKAEA 768
Cdd:TIGR02168 710 LEEELEQLRKEL-EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA--EAEAEIEE 786
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 769 QsRAEILSLQEKLRVTENRLQAVEADHTTQDvnmIENNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQIT 848
Cdd:TIGR02168 787 L-EAQIEQLKEELKALREALDELRAELTLLN---EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 849 ALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLlesprhsagvdrdlsrev 928
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL------------------ 924
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 1207177220 929 hrAEWRMKEQKLQDDIKTLREKLLLLGRERLSPDHRRYSM--MDPSASDTEVARLRQRL 985
Cdd:TIGR02168 925 --AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKieDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
340-878 |
6.00e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 6.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 340 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATEtesnLQQVRAMLASTQKDKMELANQL 419
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE----LARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 420 EEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEELALR 499
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 500 KAEVEELQVRFQRgssgSATDAEDgepgITSETLVLREQLLSVGRERREESSQLRERyEASLSTSQKEIERLKAITERQG 579
Cdd:COG1196 399 AAQLEELEEAEEA----LLERLER----LEEELEELEEALAELEEEEEEEEEALEEA-AEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 580 QEISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALE---GLKME 656
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEaalAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 657 HQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIV------ 730
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLgrtlva 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 731 -DLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNS 809
Cdd:COG1196 630 aRLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 810 DEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEK-TADGLIKEKTRLEAELETM 878
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpDLEELERELERLEREIEAL 779
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
203-509 |
6.55e-15 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 79.34 E-value: 6.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 203 LKVGDRVLVGGTKtGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFapihkvIRIGFPSTSPAKA 282
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF------IRPDDDSLLNGNA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 283 KKSKRmamgvsslahspssssissvssvassvggrpsRTGLLTETSSryarkISGTTALQEALKEKQQHIEQLLAERDLE 362
Cdd:COG5244 77 AYEKI--------------------------------KGGLVCESKG-----MDKDGEIKQENHEDRIHFEESKIRRLEE 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 363 RAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESIT--- 439
Cdd:COG5244 120 TIEALKSTEKEEIVELRRENEELDKINLSLRERISSEEPELNKDGSKLSYDELKEFVEESRVQVYDMVELVSDISETlnr 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 440 KGDLETQTKLEHARIRQLEQCLH---LEKSKAERLQKELEE----------KMQTTVEEKTRVMQLEEELALRKAEVEEL 506
Cdd:COG5244 200 NGSIQRSSVRECERSNIHDVLFLvngILDGVIDELNGELERlrrqlvslmsSHGIEVEENSRLKATLEKFQSLELKVNTL 279
|
...
gi 1207177220 507 QVR 509
Cdd:COG5244 280 QEE 282
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
360-985 |
6.98e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 6.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 360 DLERAEVAKATSHICEVEKELAALKARhlqyATETESNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESIT 439
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAE----LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 440 KGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEELALRKAEVEELQvrfqrgssgsat 519
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE------------ 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 520 daedgepgitsetlvlrEQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQgQEISDLKQRLQQATRENMEM 599
Cdd:COG1196 365 -----------------EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE-EAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 600 MDSWKAKLDALVGDHQRALEELKAslttdcgsgeinggegegslpemRAALEGLKMEHQLELENLKAKHEIDAAVMAKER 679
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEE-----------------------EAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 680 EDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLqkAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVD 759
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV--AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 760 YEALQKAEAQSRAEILSLqEKLRVTENRLQAVEADHTTQDVNMIEnNDNSDEKVKLKQNVEETLEKltkrekevSTLTTQ 839
Cdd:COG1196 562 AIEYLKAAKAGRATFLPL-DKIRARAALAAALARGAIGAAVDLVA-SDLREADARYYVLGDTLLGR--------TLVAAR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 840 VDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLLESPRHSAG 919
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1207177220 920 VDRDLSREVHRAEwRMKEQKLQDDIKTLREKLLLLGRERLSPDHRRYSMMDPSASDTEVARLRQRL 985
Cdd:COG1196 712 AEEERLEEELEEE-ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
326-907 |
1.56e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 326 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNlqqvraml 405
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK-------- 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 406 ASTQKDKMELANQLEEEKRKVEDLQFRVEEEsitKGDLETQTKLEHARIRQLEQCLhlEKSKAERLQKELEEKMQTTVEE 485
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEAAE--EKAEAAEKKKEEAKKKADAAKK 1385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 486 KTRVMQLEEELalrKAEVEELQVRFQRGSSGSATDAEDGEPGITSETLVLREQLLSVGRERR--EESSQLRERYEASLST 563
Cdd:PTZ00121 1386 KAEEKKKADEA---KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKkaDEAKKKAEEAKKAEEA 1462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 564 SQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDAlvgdhQRALEELKASlttdcgsGEINGGEGEGSL 643
Cdd:PTZ00121 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA-----KKKADEAKKA-------EEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 644 PEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRsRLQELRDQLEDSEENWKiQVETKSNQHTLEIKEVSEKLQ 723
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK-KAEEDKNMALRKAEEAK-KAEEARIEEVMKLYEEEKKMK 1608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 724 KAELRivdldKSQEEREKVNQLLKEQlmlAEKKMVDYEALQKAEAQSRAEILSLQEKlrvtENRLQAveadhtTQDVNMI 803
Cdd:PTZ00121 1609 AEEAK-----KAEEAKIKAEELKKAE---EEKKKVEQLKKKEAEEKKKAEELKKAEE----ENKIKA------AEEAKKA 1670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 804 ENNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSH 883
Cdd:PTZ00121 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
570 580
....*....|....*....|....
gi 1207177220 884 DASGQLVNISQELLKKERSLNELR 907
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKEEEKKAEEIR 1774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
324-802 |
2.57e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 2.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 324 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKAR----------HLQYATE 393
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEleeaeaelaeAEEALLE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 394 TESNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQK 473
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 474 ELEEKMQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSS-----GSATDAEDGEPGITSETLVLREQLLSVGRERRE 548
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAArllllLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 549 ESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQ-RLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLTT 627
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAaKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 628 DCGSGEINGGEGEGSLPEMRAALEG---LKMEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQV 704
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAalrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 705 ETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILS---LQEKL 781
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDleeLEREL 769
|
490 500
....*....|....*....|.
gi 1207177220 782 RVTENRLQAVEAdhttqdVNM 802
Cdd:COG1196 770 ERLEREIEALGP------VNL 784
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
74-135 |
3.92e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.48 E-value: 3.92e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207177220 74 VGERVWVNGVKpGVIAYLGETQFSPGQWAGVVLNDLVGKNDGSVNGVRYFECQALQGIFTRP 135
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
326-909 |
5.54e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 5.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 326 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDlERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAML 405
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIE-RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 406 AstqkdkmelanQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEE--KMQTTV 483
Cdd:PRK03918 224 E-----------KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElkELKEKA 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 484 EEKTRVMQLEEELALRKAEVEELQVRFQRGSSGsatdaedgepgiTSETLVLREQLLSVGRERREESSQLRERYEAsLST 563
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEING------------IEERIKELEEKEERLEELKKKLKELEKRLEE-LEE 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 564 SQKEIERLKAI--------TERQGQEISDLKQRLQQATRENMEMMD------SWKAKLDALVGDHQRALEELKASlttdc 629
Cdd:PRK03918 360 RHELYEEAKAKkeelerlkKRLTGLTPEKLEKELEELEKAKEEIEEeiskitARIGELKKEIKELKKAIEELKKA----- 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 630 gsgeinggegEGSLPEMRAALEglkmEHqlELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSN 709
Cdd:PRK03918 435 ----------KGKCPVCGRELT----EE--HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 710 QHTLE-IKEVSEKLQKAELRivDLDKSQEEREKVNQL---LKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTE 785
Cdd:PRK03918 499 KELAEqLKELEEKLKKYNLE--ELEKKAEEYEKLKEKlikLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELL 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 786 NRLQAV------EADHTTQDVNMIENNDNS------------DEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQI 847
Cdd:PRK03918 577 KELEELgfesveELEERLKELEPFYNEYLElkdaekelereeKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207177220 848 TalEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVL 909
Cdd:PRK03918 657 S--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
343-962 |
7.54e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 7.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 343 EALKEKQQHIEQLlAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMlastqKDKMELANQLEEE 422
Cdd:pfam02463 339 ELEKELKELEIKR-EAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL-----KSEEEKEAQLLLE 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 423 KRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEELALRKAE 502
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSR 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 503 VEELQVRFQRGSsgsatdAEDGEPGITSETLVLREQLLSVGRERREESSQLRERYEASLSTS-QKEIERLKAITERQGQE 581
Cdd:pfam02463 493 QKLEERSQKESK------ARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAvIVEVSATADEVEERQKL 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 582 ISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLEL 661
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 662 ENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRivdlDKSQEEREK 741
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK----KLKLEAEEL 722
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 742 VNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNmIENNDNSDEKVKLKQNVEE 821
Cdd:pfam02463 723 LADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK-TEKLKVEEEKEEKLKAQEE 801
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 822 TLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTadgLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKER 901
Cdd:pfam02463 802 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL---ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207177220 902 SLNELRVLLLESPRHSAGVDRDLSREVHRAEWRMKEQKLQDDIKTLREKLLLLGRERLSPD 962
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
339-626 |
9.41e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 9.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 339 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYA---TETESNLQQVRAMLASTQKDKMEL 415
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEeriAQLSKELTELEAEIEELEERLEEA 773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 416 ANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEE 495
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 496 LALRKAEVEELQVRFQRGSSGsATDAEDGEPGITSETLVLREQLLSVGRERREESSQLRErYEASLSTSQKEIERLKAIT 575
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESE-LEALLNERASLEEALALLRSELEELSEELRELESKRSE-LRRELEELREKLAQLELRL 931
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1207177220 576 ERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLT 626
Cdd:TIGR02168 932 EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-825 |
2.45e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 346 KEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMlASTQKDKMELANQLEEEKRK 425
Cdd:PTZ00121 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK-AEEDKKKADELKKAAAAKKK 1419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 426 VEDLQFRVEEesITKGDlETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEK-----MQTTVEEKTRVMQLEEELALRK 500
Cdd:PTZ00121 1420 ADEAKKKAEE--KKKAD-EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAkkadeAKKKAEEAKKADEAKKKAEEAK 1496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 501 AEVEELqvRFQRGSSGSATDAEDGEPGITSETLVLREQLLSVGRERREE----SSQLRERYEASLSTSQKEIERLKAITE 576
Cdd:PTZ00121 1497 KKADEA--KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkkADELKKAEELKKAEEKKKAEEAKKAEE 1574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 577 RQGQEISDlKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEE--LKASLTTDCGSGEINGGEGEGSLPEMRAALEGLK 654
Cdd:PTZ00121 1575 DKNMALRK-AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEakIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 655 MEHQ---LELENLKAKHEID---AAVMAKEREDLRSRLQELRDQLED-----------------SEENWKIQVETKSNQH 711
Cdd:PTZ00121 1654 KAEEenkIKAAEEAKKAEEDkkkAEEAKKAEEDEKKAAEALKKEAEEakkaeelkkkeaeekkkAEELKKAEEENKIKAE 1733
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 712 TLEIKEVSEKLQKAELRivdldKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSraeilslqeklrvtENRLQAV 791
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAK-----KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE--------------EDEKRRM 1794
|
490 500 510
....*....|....*....|....*....|....*....
gi 1207177220 792 EADHTTQDV-----NMIENNDNSDEKVKLKQNVEETLEK 825
Cdd:PTZ00121 1795 EVDKKIKDIfdnfaNIIEGGKEGNLVINDSKEMEDSAIK 1833
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
405-782 |
5.68e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 5.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 405 LASTQKDKMELANQLEEEKRKVEDLQFRVEeesITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVE 484
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAE---KAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 485 EKTRVMQLEEELALRKAEVEELQVRFQrgssgsatdaedgepgitsetlVLREQLLSVGRERREESSQLRErYEASLSTS 564
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIE----------------------ELQKELYALANEISRLEQQKQI-LRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 565 QKEIERLKAITERQGQEISDLKQRLQQatrenmemmdsWKAKLDALVGDHQRALEELKAslttdcgsgeinggeGEGSLP 644
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAE-----------LEEKLEELKEELESLEAELEE---------------LEAELE 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 645 EMRAALEGLkmehQLELENLKAKheidAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKS----NQHTLEIKEVSE 720
Cdd:TIGR02168 369 ELESRLEEL----EEQLETLRSK----VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEellkKLEEAELKELQA 440
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177220 721 KLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEAlQKAEAQSRAEIL-SLQEKLR 782
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER-ELAQLQARLDSLeRLQENLE 502
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
398-853 |
5.95e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 63.25 E-value: 5.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 398 LQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEesitkgdleTQTKLEHARIRQLEQCLHLEKSKAERLQKELEE 477
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEE---------LREELEKLEKLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 478 KMQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRgssgsatdaedgepgITSETLVLREQLLSVGRERREESSQLRERY 557
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEE---------------LLEQLSLATEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 558 EASLSTSQKEIERLKAITER--QGQEISDLKQRLQQATRENM--------EMMDSWKAKLDALVGDHQRALeelkASLTT 627
Cdd:COG4717 212 EEELEEAQEELEELEEELEQleNELEAAALEERLKEARLLLLiaaallalLGLGGSLLSLILTIAGVLFLV----LGLLA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 628 DCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSR---LQELRDQLEDSEENWKIQV 704
Cdd:COG4717 288 LLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRieeLQELLREAEELEEELQLEE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 705 ETKSNQHTLEIKEVS--EKLQKAELRIVDLDKSQEEREKVNQLLKEQL--MLAEKKMVDYEALQKAEAQSRAEILSLQEK 780
Cdd:COG4717 368 LEQEIAALLAEAGVEdeEELRAALEQAEEYQELKEELEELEEQLEELLgeLEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177220 781 LRVTENRLQAVEADhttqdvnmIENNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEK 853
Cdd:COG4717 448 LEELREELAELEAE--------LEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
332-939 |
2.63e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 2.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 332 ARKISGTTALQEALK-EKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETEsNLQQVRAMLASTQK 410
Cdd:PTZ00121 1145 ARKAEDAKRVEIARKaEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAE-EERKAEEARKAEDA 1223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 411 DKMELANQLEEEKRKVEDLQfRVEEESitkgDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEkmqttVEEKTRVM 490
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAEEAK-KAEEER----NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK-----AEEKKKAD 1293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 491 QLEEELALRKAEVEELQVRFQRGSSGSATDAEDGEPgiTSETLvlreqllsvgRERREESSQLRERYEASLSTSQKEIER 570
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK--KADAA----------KKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 571 LKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDAlvGDHQRALEELKASlttdcGSGEINGGEGEGSLPEMRAAL 650
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA--EEDKKKADELKKA-----AAAKKKADEAKKKAEEKKKAD 1434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 651 EGLK-MEHQLELENLKAKHEidaavMAKEREDLRSRLQELR--DQLEDSEENWKIQVETKsnqhtleiKEVSEKLQKAEl 727
Cdd:PTZ00121 1435 EAKKkAEEAKKADEAKKKAE-----EAKKAEEAKKKAEEAKkaDEAKKKAEEAKKADEAK--------KKAEEAKKKAD- 1500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 728 rivDLDKSQEEREKVNQLLK-------EQLMLAEKKMvDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDV 800
Cdd:PTZ00121 1501 ---EAKKAAEAKKKADEAKKaeeakkaDEAKKAEEAK-KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 801 NMIE---------NNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQV---DALKTQITALEEKVRLGEKTADGLIKEK 868
Cdd:PTZ00121 1577 NMALrkaeeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkaEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207177220 869 TRLEAELETMTKKSHDASGQlvniSQELLKKE---RSLNELRVLLLESPRHSAGVDRDLSREVHRAEWRMKEQK 939
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKK----AEEAKKAEedeKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
544-997 |
3.18e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.21 E-value: 3.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 544 RERREESSQLRERYEASlstsQKEIERLKAiterqgqEISDLKQRLQQATREnmemmdswKAKLDALVGDHQRALEELKA 623
Cdd:PRK02224 233 RETRDEADEVLEEHEER----REELETLEA-------EIEDLRETIAETERE--------REELAEEVRDLRERLEELEE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 624 SLTtDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKA---KHEIDAAVMAKEREDLRSRLQELRDQ---LEDSE 697
Cdd:PRK02224 294 ERD-DLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEaaeLESEL 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 698 ENWKIQVETKSNqhtlEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLmlaekkmvdyEALQKAEAQSRAEILSL 777
Cdd:PRK02224 373 EEAREAVEDRRE----EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER----------DELREREAELEATLRTA 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 778 QEKLRVTENRLQAVEADHTTQDVN---MIENNDNSDEKV--------KLKQNVE------ETLEKLTKREKEVSTLTTQV 840
Cdd:PRK02224 439 RERVEEAEALLEAGKCPECGQPVEgspHVETIEEDRERVeeleaeleDLEEEVEeveerlERAEDLVEAEDRIERLEERR 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 841 DALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELrvlllESPRHSAGV 920
Cdd:PRK02224 519 EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL-----KERIESLER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 921 DRDLSREVHRAEwrmkeqklqDDIKTLREKLLLLG------RERLSPDHRRYSMMDPSASDTEVARLRQRLLNTEDALRN 994
Cdd:PRK02224 594 IRTLLAAIADAE---------DEIERLREKREALAelnderRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQ 664
|
...
gi 1207177220 995 ALE 997
Cdd:PRK02224 665 VEE 667
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
341-906 |
3.74e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 3.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 341 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATE---TESNLQQVRAML-----------A 406
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEklnIQKNIDKIKNKLlklelllsnlkK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 407 STQKDKmELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLeqclhleKSKAERLQKELEEKMQTTVEEK 486
Cdd:TIGR04523 209 KIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL-------KDEQNKIKKQLSEKQKELEQNN 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 487 TRVMQLEEELALRKAEVEELQvrfqrgssgsatdaEDGEPGITSEtlvLREQLLSVGRERREESSQLREryeaslstSQK 566
Cdd:TIGR04523 281 KKIKELEKQLNQLKSEISDLN--------------NQKEQDWNKE---LKSELKNQEKKLEEIQNQISQ--------NNK 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 567 EIERLKaiterqgQEISDLKQRLQQATRENMEMMDSWKAKLDA---LVGDHQRALEELKaSLTTDCGSGEINGGEGEGSL 643
Cdd:TIGR04523 336 IISQLN-------EQISQLKKELTNSESENSEKQRELEEKQNEiekLKKENQSYKQEIK-NLESQINDLESKIQNQEKLN 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 644 PEMRAALEGLKMEHQL---ELENLKAKhEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVET-----KSNQHTLEI 715
Cdd:TIGR04523 408 QQKDEQIKKLQQEKELlekEIERLKET-IIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrsiNKIKQNLEQ 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 716 KEVSEKLQKAELRIVDLDKSQEErEKVNQLLKEQLMLAEKKmvdyEALQKAEAQSRAEILSLQEKLRVTENRLqaveadh 795
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELE-EKVKDLTKKISSLKEKI----EKLESEKKEKESKISDLEDELNKDDFEL------- 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 796 tTQDVNMIENNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAEL 875
Cdd:TIGR04523 555 -KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
570 580 590
....*....|....*....|....*....|.
gi 1207177220 876 ETMTKKSHDASGQLVNISQELLKKERSLNEL 906
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQIKETIKEIRNKWPEI 664
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
364-912 |
1.57e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 59.03 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 364 AEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRA---MLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITK 440
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAeteLCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 441 GDLETQTKLEHARIRQLEQCLHLEKSKAERLQKEleekmQTTVEEKtrVMQLEEELALrkaeVEELQVRFQRgssgsatd 520
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLE-----KVTTEAK--IKKLEEDILL----LEDQNSKLSK-------- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 521 aedgEPGITSETLVLREQLLSVGRERREESSQLRERYEASLSTSQkeiERLKAiTERQGQEISDLKQRLQQATRENMEMM 600
Cdd:pfam01576 153 ----ERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLE---ERLKK-EEKGRQELEKAKRKLEGESTDLQEQI 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 601 DSWKAKLDALVGDHQRALEELKASLT---------TDCGSGEINGGEGEGSLPE-------MRAALEGLKMEHQLELENL 664
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALArleeetaqkNNALKKIRELEAQISELQEdleseraARNKAEKQRRDLGEELEAL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 665 KAKHEIDAAVMAKEREdLRSR----LQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEERE 740
Cdd:pfam01576 305 KTELEDTLDTTAAQQE-LRSKreqeVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 741 KVNQLLKEQL-MLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAV-----EADHTTQDVNMIE--NNDNSDEK 812
Cdd:pfam01576 384 SENAELQAELrTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLsklqsELESVSSLLNEAEgkNIKLSKDV 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 813 VKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNI 892
Cdd:pfam01576 464 SSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEAL 543
|
570 580
....*....|....*....|
gi 1207177220 893 SQELLKKERSLNELRVLLLE 912
Cdd:pfam01576 544 EEGKKRLQRELEALTQQLEE 563
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
446-901 |
2.49e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 446 QTKLEHARIRQLEQCLHLEKSKAERLQKELEE--KMQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATDAED 523
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEElrEELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 524 GEpgitsETLVLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATREnmemMDSW 603
Cdd:COG4717 162 EE-----ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE----LEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 604 KAKLdaLVGDHQRALEELK-----ASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAavmakE 678
Cdd:COG4717 233 ENEL--EAAALEERLKEARlllliAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA-----E 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 679 REDLRSRLQELRDQledSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMV 758
Cdd:COG4717 306 ELQALPALEELEEE---ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 759 DYEALQKAEAQSRaEILSLQEKLRVTENRLQAVEADhttqdvnmIENNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTT 838
Cdd:COG4717 383 DEEELRAALEQAE-EYQELKEELEELEEQLEELLGE--------LEELLEALDEEELEEELEELEEELEELEEELEELRE 453
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207177220 839 QVDALKTQITALEEKVRLGEktadgLIKEKTRLEAELETMTKK--SHDASGQLVNISQELLKKER 901
Cdd:COG4717 454 ELAELEAELEQLEEDGELAE-----LLQELEELKAELRELAEEwaALKLALELLEEAREEYREER 513
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
324-792 |
2.86e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 2.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 324 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQY--ATETESNLQQV 401
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeeAKAKKEELERL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 402 RAMLASTQKDKMElaNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQClhleKSKAERLQKELEEKMQT 481
Cdd:PRK03918 378 KKRLTGLTPEKLE--KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA----KGKCPVCGRELTEEHRK 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 482 TVEEKTR--VMQLEEELALRKAEVEELQVRFQRgssgsatdaedgepgitSETLVLREQLLSVGRERREESSQLRERYEA 559
Cdd:PRK03918 452 ELLEEYTaeLKRIEKELKEIEEKERKLRKELRE-----------------LEKVLKKESELIKLKELAEQLKELEEKLKK 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 560 ----SLSTSQKEIERLKAITERQGQEISDLKQRLqqatrENMEMMDSWKAKLDALVGDHQRALEELKASLTTDCGSGEIN 635
Cdd:PRK03918 515 ynleELEKKAEEYEKLKEKLIKLKGEIKSLKKEL-----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEE 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 636 GGEGEGSL-PEMRAALEGLKMEHQLELENLKAKHEIDAAVMA-KEREDLRSRLQELRDQLEDSEENW-KIQVETKSNQHT 712
Cdd:PRK03918 590 LEERLKELePFYNEYLELKDAEKELEREEKELKKLEEELDKAfEELAETEKRLEELRKELEELEKKYsEEEYEELREEYL 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 713 leikEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAeaqsRAEILSLQEKLR-----VTENR 787
Cdd:PRK03918 670 ----ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA----LERVEELREKVKkykalLKERA 741
|
....*
gi 1207177220 788 LQAVE 792
Cdd:PRK03918 742 LSKVG 746
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
323-903 |
3.04e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 323 LLTETSSRYARKISGTTALQEALKEK----QQHIEQLLAERDLER--AEVAKATSHIcEVEKELAALKARHLQYATETES 396
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVymdlNNNIEKMILAFEELRvqAENARLEMHF-KLKEDHEKIQHLEEEYKKEIND 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 397 NLQQVRAMLAstqkdkmelanQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELE 476
Cdd:pfam05483 238 KEKQVSLLLI-----------QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 477 EKM--QTTVEEKTRVM-----QLEEElalRKAEVEELQvRFQRGSSGSATDAEdgepgitsETLVLREQLLSVGRERREE 549
Cdd:pfam05483 307 RSMstQKALEEDLQIAtkticQLTEE---KEAQMEELN-KAKAAHSFVVTEFE--------ATTCSLEELLRTEQQRLEK 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 550 SSQLRERYEASLSTSQKEIERLKAITERQGQEISDLK------QRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKa 623
Cdd:pfam05483 375 NEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKkilaedEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIH- 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 624 SLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEH--------QLELENLKAKHEIDAAV--MAKEREDL-RSRLQELR-- 690
Cdd:pfam05483 454 DLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNieltahcdKLLLENKELTQEASDMTleLKKHQEDIiNCKKQEERml 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 691 ---DQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQL----MLAEKKMVDYEAL 763
Cdd:pfam05483 534 kqiENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCnnlkKQIENKNKNIEEL 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 764 QKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETL----EKLTKREKEVSTLTTQ 839
Cdd:pfam05483 614 HQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLleevEKAKAIADEAVKLQKE 693
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207177220 840 VDaLKTQiTALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASG-------QLVNISQELLKKERSL 903
Cdd:pfam05483 694 ID-KRCQ-HKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSakaaleiELSNIKAELLSLKKQL 762
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
393-748 |
3.27e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 3.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 393 ETESNLQQVRAMLA---------STQKDKMELANQLEEEKRKVEdlqfrVEEESITKGDLETQTKLEHARIRQLEQCLHL 463
Cdd:TIGR02169 181 EVEENIERLDLIIDekrqqlerlRREREKAERYQALLKEKREYE-----GYELLKEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 464 EKSKAERLQKELEEKMQTTVEEKTRVMQLEEELALR-KAEVEELQVRFQRgssgsatdaedgepgiTSETLVLREQLLSV 542
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIAS----------------LERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 543 GRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALVgDHQRALEELK 622
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK-DYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 623 A---SLTTDCGSGEINGGEGEGSLPEMRAALEGLKmEHQLELENlkAKHEIDAAVMAKEREdlrsrLQELRDQLEDSEEN 699
Cdd:TIGR02169 399 ReinELKRELDRLQEELQRLSEELADLNAAIAGIE-AKINELEE--EKEDKALEIKKQEWK-----LEQLAADLSKYEQE 470
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1207177220 700 wKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKE 748
Cdd:TIGR02169 471 -LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
333-609 |
1.05e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 333 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKElAALKARHLQYATETESNLQQVRAmlASTQKDK 412
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE-KKMKAEEAKKAEEAKIKAEELKK--AEEEKKK 1634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 413 MELANQLE-EEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQT------TVEE 485
Cdd:PTZ00121 1635 VEQLKKKEaEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkkkEAEE 1714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 486 KTRVMQLEEELALRKAEVEELQvRFQRGSSGSATDA--EDGEpgitsetlvlREQLLSVGRERREESSQLRERYEASLST 563
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAK-KEAEEDKKKAEEAkkDEEE----------KKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1207177220 564 S-QKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDA 609
Cdd:PTZ00121 1784 ElDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS 1830
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-831 |
1.28e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 340 ALQEALKEKQQHIEQLLAE-RDLEraEVAKATSHICEVEKELAALKARHLQYaTETESNLQQVRAMLASTQKDKMELANQ 418
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEiEELE--EKVKELKELKEKAEEYIKLSEFYEEY-LDELREIEKRLSRLEEEINGIEERIKE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 419 LEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEELAL 498
Cdd:PRK03918 333 LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 499 RKAEVEElqvrfQRGSSGSATDAEDGEPGITSetlvlreqllSVGRERREE-SSQLRERYEASLSTSQKEIERLKAiter 577
Cdd:PRK03918 413 RIGELKK-----EIKELKKAIEELKKAKGKCP----------VCGRELTEEhRKELLEEYTAELKRIEKELKEIEE---- 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 578 qgqEISDLKQRLqqatrENMEMMDSWKAKLDAL--VGDHQRALEE-LKASLTTDCGSGEINGGEGEGSLPEMRAALEGLK 654
Cdd:PRK03918 474 ---KERKLRKEL-----RELEKVLKKESELIKLkeLAEQLKELEEkLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 655 --MEHQLELENLKAKHEIDAAVMAKEREDLRSRL--------QELRDQLEDSEENWKIQVETKSNQHTLEIKEvsEKLQK 724
Cdd:PRK03918 546 keLEKLEELKKKLAELEKKLDELEEELAELLKELeelgfesvEELEERLKELEPFYNEYLELKDAEKELEREE--KELKK 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 725 AELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVD--YEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTtqdvNM 802
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEeeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLE----KL 699
|
490 500 510
....*....|....*....|....*....|
gi 1207177220 803 IENNDNSDEKVKLKQNVEETLEKLTK-REK 831
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALERVEElREK 729
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
391-950 |
1.44e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 391 ATETESNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQfRVEE----ESITKgdLETQTKLEHAR----IRQLEQCLH 462
Cdd:PTZ00121 1089 ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDAR-KAEEarkaEDARK--AEEARKAEDAKrveiARKAEDARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 463 LEKSKAERLQKELEEKMQTtvEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATDAEDGEPGITSETLVLREQLLSV 542
Cdd:PTZ00121 1166 AEEARKAEDAKKAEAARKA--EEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAK 1243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 543 GRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQ-RLQQATRENMEMMDSWKAKLDAlvgDHQRALEEL 621
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkKKADEAKKAEEKKKADEAKKKA---EEAKKADEA 1320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 622 KASlttdCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEiDAAVMAKEREDLRSRLQELRDQLED---SEE 698
Cdd:PTZ00121 1321 KKK----AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE-KAEAAEKKKEEAKKKADAAKKKAEEkkkADE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 699 NWKIQVETKSNQHtlEIKEVSEKLQKAElrivDLDKSQEEREKVNQLLKEqlmlAEKKMVDYEALQKAEAQSRAEILS-- 776
Cdd:PTZ00121 1396 AKKKAEEDKKKAD--ELKKAAAAKKKAD----EAKKKAEEKKKADEAKKK----AEEAKKADEAKKKAEEAKKAEEAKkk 1465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 777 LQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLTKRE--KEVSTLTTQVDALKTQITALEEKV 854
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEeaKKADEAKKAEEAKKADEAKKAEEK 1545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 855 RLGE--KTADGLIKEKTRLEAEletMTKKSHDASGQLVNISQELLKKERS-LNELRVLLLESPRHSAGVDRDLSREVHRA 931
Cdd:PTZ00121 1546 KKADelKKAEELKKAEEKKKAE---EAKKAEEDKNMALRKAEEAKKAEEArIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
570
....*....|....*....
gi 1207177220 932 EWRMKEQKLQDDIKTLREK 950
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKK 1641
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
346-1008 |
1.78e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 1.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 346 KEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMLASTQKDKMELANQLEEEKRK 425
Cdd:pfam02463 207 KKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 426 VEDLQFRVEEESITKGDLETQTKLEharirqLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEELALRKAEVEE 505
Cdd:pfam02463 287 ELKLLAKEEEELKSELLKLERRKVD------DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 506 LqvrfqrgssgsatdaedgepgitsetlvlrEQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDL 585
Cdd:pfam02463 361 L------------------------------EKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 586 KQRLQQATRENMEMMDSWKAKLDALvgdhQRALEELKASLTTDCGSGeinggegegslpEMRAALEGLKMEHQLELENLK 665
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEE----EESIELKQGKLTEEKEEL------------EKQELKLLKDELELKKSEDLL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 666 AKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQL 745
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVS 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 746 LKEQLMLAEKKMVDYEALQKAEAQSRAEILslqEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLkQNVEETLEK 825
Cdd:pfam02463 555 ATADEVEERQKLVRALTELPLGARKLRLLI---PKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKR-AKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 826 LTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDA----SGQLVNISQELLKKER 901
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAkeeiLRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 902 SLNELRVLLLESPRHSAGVDRDLSREVHRAEWRMKEQKLQDDIKTLREKLLLLG--RERLSPDHRRYSMMDPSASDTEVA 979
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEekSELSLKEKELAEEREKTEKLKVEE 790
|
650 660
....*....|....*....|....*....
gi 1207177220 980 RLRQRLLNTEDALRNALEHNQHVDQLVQA 1008
Cdd:pfam02463 791 EKEEKLKAQEEELRALEEELKEEAELLEE 819
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
391-781 |
2.04e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 391 ATETESNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAER 470
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 471 LQKELEEKMQTTVEEKTRVMQLEEELALRKAEVEELQvrfqrgssgsATDAEDGEPGITSETLVLREqllsvgrERREES 550
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE----------ARLSHSRIPEIQAELSKLEE-------EVSRIE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 551 SQLRErYEASLSTSQKEIERLKAITERQGQEISDLKQRlQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLttdcg 630
Cdd:TIGR02169 812 ARLRE-IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRL----- 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 631 sgeinggegegslpemrAALEGLKMEHQLELENLK-AKHEIDAAVMAKER--EDLRSRLQELRDQLEDSEENWKIQVETK 707
Cdd:TIGR02169 885 -----------------GDLKKERDELEAQLRELErKIEELEAQIEKKRKrlSELKAKLEALEEELSEIEDPKGEDEEIP 947
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207177220 708 SNqhTLEIKEVSEKLQKAELRIVDLdksqeerEKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKL 781
Cdd:TIGR02169 948 EE--ELSLEDVQAELQRVEEEIRAL-------EPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
669-1014 |
2.66e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 669 EIDAAVMAKEREDLRSRLQELRDQLEdseenwkiQVETKSNQHTLEIKEVSEKLQKAELRIvdldksQEEREKVNQLLKE 748
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELE--------ELEAELEELEAELAELEAELEELRLEL------EELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 749 qlmlaekkmvdYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDvnmienndnsDEKVKLKQNVEETLEKLTK 828
Cdd:COG1196 290 -----------EYELLAELARLEQDIARLEERRRELEERLEELEEELAELE----------EELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 829 REKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRV 908
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 909 LLLESprhsagVDRDLSREVHRAEWRMKEQKLQDDIKTLREKLLLLGRERLSPDhrrysmmdpsASDTEVARLRQRLLNT 988
Cdd:COG1196 429 ALAEL------EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE----------AALAELLEELAEAAAR 492
|
330 340
....*....|....*....|....*.
gi 1207177220 989 EDALRNALEHNQHVDQLVQAMRTRPD 1014
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
343-832 |
3.39e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 3.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 343 EALKEKQQHIEQLLAERdlERAEVAKATSHicEVEK-ELAALKARHLQYATETESNLQQVR----AMLASTQKDKMELAN 417
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAK--KKADEAKKKAE--EKKKaDEAKKKAEEAKKADEAKKKAEEAKkaeeAKKKAEEAKKADEAK 1476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 418 QLEEEKRKVEDLQFRVEEesiTKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTV---EEKTRVMQLEE 494
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAkkaEEKKKADELKK 1553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 495 ELALRKAEVEELQVRFQRGSSGSATDAEDGEPGITSETLVLREQLLSVGRERREESSQLRERYEASLSTSQ-KEIERLKA 573
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKK 1633
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 574 ITERQGQEISDLKQRLQQATRENmEMMDSWKAKLDALVGDHQRALEELKASlttdcGSGEINGGEGEGSLPEMRAALEGL 653
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAE-EENKIKAAEEAKKAEEDKKKAEEAKKA-----EEDEKKAAEALKKEAEEAKKAEEL 1707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 654 KMEHQLEL---ENLKAKHE---IDAAVMAKEREDLRSRLQELRdqLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAEL 727
Cdd:PTZ00121 1708 KKKEAEEKkkaEELKKAEEenkIKAEEAKKEAEEDKKKAEEAK--KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 728 RIVDLDKSQEEREKVNQLL--------------------KEQLMLAEKKMVDYEALQKAEAQ----------------SR 771
Cdd:PTZ00121 1786 DEEDEKRRMEVDKKIKDIFdnfaniieggkegnlvindsKEMEDSAIKEVADSKNMQLEEADafekhkfnknnengedGN 1865
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207177220 772 AEILSLQEKLRVTENRLQAVEADHTTQ-DVNMIE-----------NNDNSDEKVK----LKQNVEETLEKLTKREKE 832
Cdd:PTZ00121 1866 KEADFNKEKDLKEDDEEEIEEADEIEKiDKDDIEreipnnnmagkNNDIIDDKLDkdeyIKRDAEETREEIIKISKK 1942
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
554-855 |
5.18e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 5.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 554 RERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLdalvgdhQRALEELKASLTTdCGSGE 633
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV-------KEKIGELEAEIAS-LERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 634 INGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEidaaVMAKEREDLRSRLQELRDQLEDSEEnwKIQVETKSNQHTL 713
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEELEDLRA--ELEEVDKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 714 EikEVSEKLQKaelrivdLDKSQEERekvNQLLKEQLMLAEKKmvdyEALQKAEAQSRAEILSLQEKLRVTENRLQAVEA 793
Cdd:TIGR02169 385 D--ELKDYREK-------LEKLKREI---NELKRELDRLQEEL----QRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207177220 794 DHTTQDVNMIEnndNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVR 855
Cdd:TIGR02169 449 EIKKQEWKLEQ---LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
672-910 |
1.10e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 672 AAVMAKEREDLRSRLQELRDQLEDSEEnwkiqvetksnqhtlEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLM 751
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEK---------------ELAALKKEEKALLKQLAALERRIAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 752 LAEKKMvdyEALQKAEAQSRAEILSLQEKLRvteNRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEkltKREK 831
Cdd:COG4942 80 ALEAEL---AELEKEIAELRAELEAQKEELA---ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP---ARRE 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207177220 832 EVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLL 910
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
455-948 |
1.24e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 455 RQLEQCLHLEKSKAERLQK--ELEEKMQTTVEEKtrVMQLEEELALRKAEVEELqVRFQRGSSGSATDaedgepgitset 532
Cdd:pfam15921 78 RVLEEYSHQVKDLQRRLNEsnELHEKQKFYLRQS--VIDLQTKLQEMQMERDAM-ADIRRRESQSQED------------ 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 533 lvLREQLLSVGRERrEESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKA-KLDALV 611
Cdd:pfam15921 143 --LRNQLQNTVHEL-EAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmHFRSLG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 612 GDHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRD 691
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 692 QLEdseenwkIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMvdyealqkaeAQSR 771
Cdd:pfam15921 300 QLE-------IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL----------TEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 772 AEILSLQEKLRVTENRLQAVEAD-HTTQDVNMIENNDNS---DEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQI 847
Cdd:pfam15921 363 TERDQFSQESGNLDDQLQKLLADlHKREKELSLEKEQNKrlwDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEC 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 848 TALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLLESPRHSAGVDRDLSRE 927
Cdd:pfam15921 443 QGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKL 522
|
490 500
....*....|....*....|..
gi 1207177220 928 VHRAEWRMKE-QKLQDDIKTLR 948
Cdd:pfam15921 523 RSRVDLKLQElQHLKNEGDHLR 544
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
544-876 |
1.34e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 544 RERREESsqlreryEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATR--------ENMEMmDSWKAKLDALVgDHQ 615
Cdd:TIGR02168 171 KERRKET-------ERKLERTRENLDRLEDILNELERQLKSLERQAEKAERykelkaelRELEL-ALLVLRLEELR-EEL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 616 RALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQ------LELENLKAKHEIDAAVMAKEREDLRSRLQEL 689
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEelqkelYALANEISRLEQQKQILRERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 690 RDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLmlaekkmvdyEALQKAEAQ 769
Cdd:TIGR02168 322 EAQLEELESK-LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----------ETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 770 SRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDE--KVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQI 847
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaeLKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
330 340
....*....|....*....|....*....
gi 1207177220 848 TALEEKVRLGEKTADGLIKEKTRLEAELE 876
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
352-595 |
1.40e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 352 IEQLLAERDLERAEVAKATSHICEVEKELAALKARH-----LQYATETESNLQQVRAMLASTQKDK----------MELA 416
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERRealqrLAEYSWDEIDVASAEREIAELEAELerldassddlAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 417 NQLEEEKRKVEDLQFRVEEESITKGDLETQ-----TKLEHARIR--------QLEQCLHLEKSKAERLQKELEEKMQTTV 483
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKEleqaeEELDELQDRleaaedlaRLELRALLEERFAAALGDAVERELRENL 771
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 484 EEktRVMQLEEELALRKAEVEELQVRFQR----GSSGSATDAEDGEpgitsETLVLREQLLSVGRERREEssQLREryea 559
Cdd:COG4913 772 EE--RIDALRARLNRAEEELERAMRAFNRewpaETADLDADLESLP-----EYLALLDRLEEDGLPEYEE--RFKE---- 838
|
250 260 270
....*....|....*....|....*....|....*.
gi 1207177220 560 slstsqkeierlkAITERQGQEISDLKQRLQQATRE 595
Cdd:COG4913 839 -------------LLNENSIEFVADLLSKLRRAIRE 861
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
353-939 |
1.43e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 353 EQLLAERDLE--RAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAM---LASTQKDKMELANQLEEEKRKVE 427
Cdd:TIGR02169 288 EQLRVKEKIGelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELereIEEERKRRDKLTEEYAELKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 428 DLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEELALRKAEVEELQ 507
Cdd:TIGR02169 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 508 VRFQRGSSGSATDAEDGEPgITSETLVLREQLLSVGRERREESSQLrERYEASLSTSQKEIERLKAITERQGQEISDLKQ 587
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSK-YEQELYDLKEEYDRVEKELSKLQREL-AEAEAQARASEERVRGGRAVEEVLKASIQGVHG 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 588 RLQQATRENMEMMDSWK----AKLDALV----GDHQRALEELK---ASLTTDCGSGEINGGEGEGSLPEMRA----ALEG 652
Cdd:TIGR02169 526 TVAQLGSVGERYATAIEvaagNRLNNVVveddAVAKEAIELLKrrkAGRATFLPLNKMRDERRDLSILSEDGvigfAVDL 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 653 LKMEHQLE------------LENLKAKHEI--------------------------------DAAVMAKEREDLRSRLQE 688
Cdd:TIGR02169 606 VEFDPKYEpafkyvfgdtlvVEDIEAARRLmgkyrmvtlegelfeksgamtggsraprggilFSRSEPAELQRLRERLEG 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 689 LRDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLdksQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEA 768
Cdd:TIGR02169 686 LKRELSSLQSE-LRRIENRLDELSQELSDASRKIGEIEKEIEQL---EQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 769 QSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIEN--NDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQ 846
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAelSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 847 ITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLlesprhsagvdRDLSR 926
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI-----------EELEA 910
|
650
....*....|...
gi 1207177220 927 EVHRAEWRMKEQK 939
Cdd:TIGR02169 911 QIEKKRKRLSELK 923
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
340-908 |
1.77e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 340 ALQEALKEKQQHIEQLLAE----RDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMLASTQKDKMEL 415
Cdd:pfam12128 280 ERQETSAELNQLLRTLDDQwkekRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 416 ANQLEEEKRKVEDLQfRVEEESITKGDLETQTKLE----------HARIRQLEQClhleKSKAERLQKELEEKMQttvEE 485
Cdd:pfam12128 360 EERLKALTGKHQDVT-AKYNRRRSKIKEQNNRDIAgikdklakirEARDRQLAVA----EDDLQALESELREQLE---AG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 486 KTRVMQLEEELALRkaeVEELQVRFQrgssgsatdaedgEPGITSETLVLREQLLSVGRERREESSQLReryeASLSTSQ 565
Cdd:pfam12128 432 KLEFNEEEYRLKSR---LGELKLRLN-------------QATATPELLLQLENFDERIERAREEQEAAN----AEVERLQ 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 566 KEIERLKAITERQGQEISDLKQRLQQ---ATRENMEMMDS---------------WKAKLDALVGDHQRALEELKASLTT 627
Cdd:pfam12128 492 SELRQARKRRDQASEALRQASRRLEErqsALDELELQLFPqagtllhflrkeapdWEQSIGKVISPELLHRTDLDPEVWD 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 628 DCGSGEINGGEGEGSLPEMRAAlEGLKMEHQLELENLKAKHEIDAAVMAKERED-----LRSRLQELRDQLEDSEENWK- 701
Cdd:pfam12128 572 GSVGGELNLYGVKLDLKRIDVP-EWAASEEELRERLDKAEEALQSAREKQAAAEeqlvqANGELEKASREETFARTALKn 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 702 -------IQVETKSNQHTLEiKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQL--MLAEKKMVDYEALQKAEAQSRA 772
Cdd:pfam12128 651 arldlrrLFDEKQSEKDKKN-KALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQkeQKREARTEKQAYWQVVEGALDA 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 773 EILSL-QEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQ---NVEETLEKLTKREKEV--------STLTTQV 840
Cdd:pfam12128 730 QLALLkAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKReirTLERKIERIAVRRQEVlryfdwyqETWLQRR 809
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207177220 841 DALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDasgQLVNISQELLKKE---RSLNELRV 908
Cdd:pfam12128 810 PRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEK---QQVRLSENLRGLRcemSKLATLKE 877
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
339-795 |
1.96e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 339 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHlqyaTETESNLQQVRAmlastqkDKMELANQ 418
Cdd:PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRD----EELRDRLEECRV-------AAQAHNEE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 419 LEEEKRKVEDLQFRVEEESITKGDLEtqTKLEHARIRQLEQclhleKSKAERLQKELEEKMQTTVEEKTRVMQLEEELAL 498
Cdd:PRK02224 344 AESLREDADDLEERAEELREEAAELE--SELEEAREAVEDR-----REEIEELEEEIEELRERFGDAPVDLGNAEDFLEE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 499 RKAEVEELQVRFQRGSSGSATDAEDGEPGitsetlvlrEQLLSVG---------------------RERREESSQLRERY 557
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEA---------EALLEAGkcpecgqpvegsphvetieedRERVEELEAELEDL 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 558 EASLSTSQKEIERLKAITErQGQEISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRAlEELKASLTTDCGSGEINGG 637
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERA-AELEAEAEEKREAAAEAEE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 638 EGEGSLPEMrAALEGLKMEHQLELENLKAKHEIDAAVMAKEREdlRSRLQELRDQLEDSEENWKIQVETKSNQH-TLE-- 714
Cdd:PRK02224 566 EAEEAREEV-AELNSKLAELKERIESLERIRTLLAAIADAEDE--IERLREKREALAELNDERRERLAEKRERKrELEae 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 715 -----IKEVSEKLQKAELRIVDLD-KSQEEREKVNQLLKEQLMLAEkkmvdyealqkaeaqSRAEILSLQEKLRVTENRL 788
Cdd:PRK02224 643 fdearIEEAREDKERAEEYLEQVEeKLDELREERDDLQAEIGAVEN---------------ELEELEELRERREALENRV 707
|
....*..
gi 1207177220 789 QAVEADH 795
Cdd:PRK02224 708 EALEALY 714
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
342-909 |
2.37e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 2.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 342 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELaalkarhlqyaTETESNLQQVRAMLASTQKDKMeLANQLEE 421
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH-----------TLTQHIHTLQQQKTTLTQKLQS-LCKELDI 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 422 EKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQC-LHLEKSKAERLQKELE-EKMQTTVEEKTRVMQLEEELALR 499
Cdd:TIGR00618 405 LQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCaAAITCTAQCEKLEKIHlQESAQSLKEREQQLQTKEQIHLQ 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 500 KAEVEELQVRFQRGSSGSATDAEdgepGITSETLVLREQLLSVGRERReessqLRERYEASLSTSQKEIERLKAITE--- 576
Cdd:TIGR00618 485 ETRKKAVVLARLLELQEEPCPLC----GSCIHPNPARQDIDNPGPLTR-----RMQRGEQTYAQLETSEEDVYHQLTser 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 577 RQGQEISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLttdcgsgeinggegegslpEMRAALEGLKME 656
Cdd:TIGR00618 556 KQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLS-------------------EAEDMLACEQHA 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 657 HQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQ 736
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 737 EEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAvEADHTTQDVNMIENNDNSDEKVKLK 816
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH-QARTVLKARTEAHFNNNEEVTAALQ 775
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 817 --QNVEETLEKLTKREKEVSTLTTQVDALKTQI-----------TALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSH 883
Cdd:TIGR00618 776 tgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIgqeipsdedilNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
570 580
....*....|....*....|....*.
gi 1207177220 884 DASGQLVNISQELLKKERSLNELRVL 909
Cdd:TIGR00618 856 ECSKQLAQLTQEQAKIIQLSDKLNGI 881
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
409-881 |
4.39e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 409 QKDKMELA-NQLEEEKRKVEDLQFRVEEEsITKgdLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKT 487
Cdd:TIGR04523 118 QKNKLEVElNKLEKQKKENKKNIDKFLTE-IKK--KEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKN 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 488 RVMQLEEELALRKAEVEELQVrfqrgssgsatdaedgepgITSETLVLREQLLSVGRERREESSQLRERyEASLSTSQKE 567
Cdd:TIGR04523 195 KLLKLELLLSNLKKKIQKNKS-------------------LESQISELKKQNNQLKDNIEKKQQEINEK-TTEISNTQTQ 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 568 IERLKAITERQGQEISDLKQRLQQATRENMEMMD---SWKAKLDALvgdHQRALEELKASLTTDCGSGEINGGEGEGSLP 644
Cdd:TIGR04523 255 LNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKqlnQLKSEISDL---NNQKEQDWNKELKSELKNQEKKLEEIQNQIS 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 645 EMRAALEGLKMehqlELENLKakheidaavmaKEREDLRSRLQELRDQLEdsEENWKIQVETKSNQhtleikEVSEKLQK 724
Cdd:TIGR04523 332 QNNKIISQLNE----QISQLK-----------KELTNSESENSEKQRELE--EKQNEIEKLKKENQ------SYKQEIKN 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 725 AELRIVDLDKSQEEREKVNQLLKEQLMLAEK----KMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDV 800
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQekelLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 801 NMienNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTK 880
Cdd:TIGR04523 469 QL---KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
.
gi 1207177220 881 K 881
Cdd:TIGR04523 546 E 546
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
343-878 |
4.58e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 4.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 343 EALKEKQQHIEQLLAERDLERAEVAKatshiCEVEKELAALKARHLQYATET-ESNLQQVRAMLASTQKDKMELANQLEE 421
Cdd:PRK02224 244 EEHEERREELETLEAEIEDLRETIAE-----TEREREELAEEVRDLRERLEElEEERDDLLAEAGLDDADAEAVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 422 EKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEELALRKA 501
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 502 EVEELQVRFQrgssgsatDAEDgepgitsetlvLREQLlsvgRERREESSQLRERYEASLSTSQKEIERLKAITERQ--- 578
Cdd:PRK02224 399 RFGDAPVDLG--------NAED-----------FLEEL----REERDELREREAELEATLRTARERVEEAEALLEAGkcp 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 579 --GQEISDlkqrlqqatrenmemmdswkakldalvGDHQRALEElkaslttdcgsgeinggeGEGSLPEMRAALEGLKME 656
Cdd:PRK02224 456 ecGQPVEG---------------------------SPHVETIEE------------------DRERVEELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 657 HqlelENLKAKHEidAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQ----------HTLEIKEVSEKLQKAE 726
Cdd:PRK02224 491 V----EEVEERLE--RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERaeelreraaeLEAEAEEKREAAAEAE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 727 LRivdldkSQEEREKVNQLLKEQLMLAEK--KMVDYEALQKAEAQSRAEILSLQEKL-----RVTENRLQAVEADHTTQD 799
Cdd:PRK02224 565 EE------AEEAREEVAELNSKLAELKERieSLERIRTLLAAIADAEDEIERLREKRealaeLNDERRERLAEKRERKRE 638
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207177220 800 VNMIENNDNSDEKVKLKQNVEETLEKLtkrEKEVSTLTTQVDALKTQITALEEKVrlgeKTADGLIKEKTRLEAELETM 878
Cdd:PRK02224 639 LEAEFDEARIEEAREDKERAEEYLEQV---EEKLDELREERDDLQAEIGAVENEL----EELEELRERREALENRVEAL 710
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
323-879 |
8.24e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 8.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 323 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYAtETESNLQQVR 402
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLE-DQNSKLSKER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 403 AMLastQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEhARIRQleqclHLEKSKaERLQKELEEKMQTT 482
Cdd:pfam01576 155 KLL---EERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKE-EKGRQ-----ELEKAK-RKLEGESTDLQEQI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 483 VEEKTRVMQLEEELALRKAEVEELQVRFQRgSSGSATDAEDGEPGITSETLVLREQLLS-------VGRERR---EESSQ 552
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALARLEE-ETAQKNNALKKIRELEAQISELQEDLESeraarnkAEKQRRdlgEELEA 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 553 LRERYEASLSTSQKEIErLKAITErqgQEISDLKQRLQQATRenmemmdSWKAKLDALVGDHQRALEELKASLttdcgsg 632
Cdd:pfam01576 304 LKTELEDTLDTTAAQQE-LRSKRE---QEVTELKKALEEETR-------SHEAQLQEMRQKHTQALEELTEQL------- 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 633 eINGGEGEGSLPEMRAALEGLKMEHQLELENL-KAKHEIDaavmaKEREDLRSRLQELRDQLEDSEEnwkiqvetksnqh 711
Cdd:pfam01576 366 -EQAKRNKANLEKAKQALESENAELQAELRTLqQAKQDSE-----HKRKKLEGQLQELQARLSESER------------- 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 712 tlEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRaeiLSLQEKLRVTEnrlqav 791
Cdd:pfam01576 427 --QRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQK---LNLSTRLRQLE------ 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 792 eadhttqdvnmienndnsDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQ-------ITALEE------------ 852
Cdd:pfam01576 496 ------------------DERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKleedagtLEALEEgkkrlqreleal 557
|
570 580
....*....|....*....|....*....
gi 1207177220 853 KVRLGEKTA--DGLIKEKTRLEAELETMT 879
Cdd:pfam01576 558 TQQLEEKAAayDKLEKTKNRLQQELDDLL 586
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
535-985 |
8.46e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.74 E-value: 8.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 535 LREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERqgqeISDLKQRL---QQATRENMEMMDSWKAKLDALV 611
Cdd:pfam05557 14 LQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKR----IRLLEKREaeaEEALREQAELNRLKKKYLEALN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 612 G------DHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENlkakheidaavmAKEREDLRSR 685
Cdd:pfam05557 90 KklnekeSQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAK------------ASEAEQLRQN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 686 LQELRDQLEDSEEnwKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQ----EEREKVNQLLKEQLMLAEKKMvDYE 761
Cdd:pfam05557 158 LEKQQSSLAEAEQ--RIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELerlrEHNKHLNENIENKLLLKEEVE-DLK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 762 ALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQnveetlEKLTKREkEVSTLTTQVD 841
Cdd:pfam05557 235 RKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQ------REIVLKE-ENSSLTSSAR 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 842 ALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASgQLVNISQELLK---KERSLNELRVLLLESPRHSA 918
Cdd:pfam05557 308 QLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLT-KERDGYRAILEsydKELTMSNYSPQLLERIEEAE 386
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207177220 919 GVDRDLsrEVHRAEWRMKEQKLQDDIKTLREKLLLLGRErLSPDHRRYSMMDPSASDTEVARLRQRL 985
Cdd:pfam05557 387 DMTQKM--QAHNEEMEAQLSVAEEELGGYKQQAQTLERE-LQALRQQESLADPSYSKEEVDSLRRKL 450
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
452-951 |
1.29e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 452 ARIRQLEQCLHLEKSKAERLQkELEEKMQTTVEEKTRVMQLEEEL-ALRKAEVE------ELQVRFQRGSSGSATDAEDG 524
Cdd:TIGR00606 228 SKEAQLESSREIVKSYENELD-PLKNRLKEIEHNLSKIMKLDNEIkALKSRKKQmekdnsELELKMEKVFQGTDEQLNDL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 525 EPGITSETLVLREQLLSVGRE------RREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENME 598
Cdd:TIGR00606 307 YHNHQRTVREKERELVDCQREleklnkERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 599 MMDSWKAKLDALVgdhQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMA-- 676
Cdd:TIGR00606 387 FSERQIKNFHTLV---IERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKel 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 677 KEREDLRSRLQELRDQLEDSEENWKiQVETKSNQHTLEIKEVSEKLQKAEL--RIVDLDKSQEEREKVNQLLKEQLMLAE 754
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELS-KAEKNSLTETLKKEVKSLQNEKADLdrKLRKLDQEMEQLNHHTTTRTQMEMLTK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 755 KKMVDYEALQKAEAQSRAEILSL-----------------QEKLRVTENRLQAV--EADHTTQDVNMIENNDNSDEKVKL 815
Cdd:TIGR00606 543 DKMDKDEQIRKIKSRHSDELTSLlgyfpnkkqledwlhskSKEINQTRDRLAKLnkELASLEQNKNHINNELESKEEQLS 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 816 K-----------QNVEETLEKLTKR----EKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTK 880
Cdd:TIGR00606 623 SyedklfdvcgsQDEESDLERLKEEieksSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQS 702
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207177220 881 KSHDASGQLVNISQELLKKERSLNELRVLLlesPRHSAGVDRdlsREVHRAEWRMKEQKLQDDIKTLREKL 951
Cdd:TIGR00606 703 KLRLAPDKLKSTESELKKKEKRRDEMLGLA---PGRQSIIDL---KEKEIPELRNKLQKVNRDIQRLKNDI 767
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
556-997 |
1.32e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 556 RYEASLSTSQKEI-----ERLKAITERQGQEISDLKQRLQqatrENMEMMDSWKAKLDALVGDHQRALEELKASlttdcg 630
Cdd:pfam15921 56 KYEVELDSPRKIIaypgkEHIERVLEEYSHQVKDLQRRLN----ESNELHEKQKFYLRQSVIDLQTKLQEMQME------ 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 631 sgeinggegegslpemRAALEGLKMEHQLELENLKAK-----HEIDAAVMAKER---------EDLRSR-------LQEL 689
Cdd:pfam15921 126 ----------------RDAMADIRRRESQSQEDLRNQlqntvHELEAAKCLKEDmledsntqiEQLRKMmlshegvLQEI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 690 RDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAeLRIVDLDKSqeerekvnqLLKEQLMLAEKKMvdyEALqKAEAQ 769
Cdd:pfam15921 190 RSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKI-LRELDTEIS---------YLKGRIFPVEDQL---EAL-KSESQ 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 770 SRAEILslqekLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLTKRE-----KEVSTLTTQVDALK 844
Cdd:pfam15921 256 NKIELL-----LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymRQLSDLESTVSQLR 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 845 TQI----TALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNelrvllLESPRHSAGV 920
Cdd:pfam15921 331 SELreakRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELS------LEKEQNKRLW 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 921 DRDLSREVHRAEWR-------MKEQKLQDDIKTLREKLlllgreRLSPDHRRYSMMDPSASDTEVARLRQRLLNTEDALR 993
Cdd:pfam15921 405 DRDTGNSITIDHLRrelddrnMEVQRLEALLKAMKSEC------QGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLR 478
|
....
gi 1207177220 994 NALE 997
Cdd:pfam15921 479 KVVE 482
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
321-595 |
1.51e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 48.53 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 321 TGLLTETSSRYARKISGTTALQEALKEKQQHIEQL---LAER-----DLERaEVAKATSHICEVEKELAALKARhlqyAT 392
Cdd:pfam19220 75 TRRLSAAEGELEELVARLAKLEAALREAEAAKEELrieLRDKtaqaeALER-QLAAETEQNRALEEENKALREE----AQ 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 393 ETESNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQ 472
Cdd:pfam19220 150 AAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQLAAEQAERERAE 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 473 KELEEKMQTTVEEKTRVMQLEEELALRKAEVEEL--QVRFQ---RGSSGSATDAEDGEPGITSETLVLR----EQLLSVG 543
Cdd:pfam19220 230 AQLEEAVEAHRAERASLRMKLEALTARAAATEQLlaEARNQlrdRDEAIRAAERRLKEASIERDTLERRlaglEADLERR 309
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1207177220 544 RERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRE 595
Cdd:pfam19220 310 TQQFQEMQRARAELEERAEMLTKALAAKDAALERAEERIASLSDRIAELTKR 361
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
340-595 |
1.56e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 340 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARhlqyATETESNLQQVRAMLASTQKDKMELANQL 419
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 420 EEEKRKVEDL---QFRVEEESITKGDLETQTKLEHARIRQLEQclhlekskaeRLQKELEEKMQTTVEEKTRVMQLEEEL 496
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLK----------YLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 497 ALRKAEVEELQVRFQRgssgsatdaedgepgitsetlvLREQLLSVGRERREESSQLRERYEAslstSQKEIERLKAITE 576
Cdd:COG4942 170 EAERAELEALLAELEE----------------------ERAALEALKAERQKLLARLEKELAE----LAAELAELQQEAE 223
|
250
....*....|....*....
gi 1207177220 577 RQGQEISDLKQRLQQATRE 595
Cdd:COG4942 224 ELEALIARLEAEAAAAAER 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
575-850 |
2.19e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.75 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 575 TERQGQEISDLKQRLQQATRENMEMmdswkakldalvgdhQRALEELKASLTTDcgsgeINGGEGEGSLPEMRAALEGLK 654
Cdd:PRK11281 75 IDRQKEETEQLKQQLAQAPAKLRQA---------------QAELEALKDDNDEE-----TRETLSTLSLRQLESRLAQTL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 655 MEHQLELENL---------------KAKHEIDAAVMakeredlrsRLQELRDQLEDSEENWKIQVETKSNQHTLEIK--E 717
Cdd:PRK11281 135 DQLQNAQNDLaeynsqlvslqtqpeRAQAALYANSQ---------RLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAllN 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 718 VSEKLQKAELR----IVDLDKSQEE--REKVNQLLKEQLMLAEkkMVDYEALQKAEAQSrAEILSLQEKLRVTENRLQAV 791
Cdd:PRK11281 206 AQNDLQRKSLEgntqLQDLLQKQRDylTARIQRLEHQLQLLQE--AINSKRLTLSEKTV-QEAQSQDEAARIQANPLVAQ 282
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 792 EADHTTQ-DVNMIENNDNSDEKVKLKQNVEETLEKLTKREKevstlttqvdALKTQITAL 850
Cdd:PRK11281 283 ELEINLQlSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSER----------NIKEQISVL 332
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
537-989 |
3.18e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 537 EQLLSVGRERREESSQLRErYEASLSTSQKEIERLKAITErqgqEISDLKQRLQQATREnmemmdswKAKLDALVGDHQR 616
Cdd:PRK03918 200 KELEEVLREINEISSELPE-LREELEKLEKEVKELEELKE----EIEELEKELESLEGS--------KRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 617 ALEELKASLttdcgsgeinggegeGSLPEMRAALEGLK--MEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLE 694
Cdd:PRK03918 267 RIEELKKEI---------------EELEEKVKELKELKekAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 695 DSEENWKiqvetksnqhtlEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLA--------EKKMVDYEALQKA 766
Cdd:PRK03918 332 ELEEKEE------------RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKkrltgltpEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 767 EAQSRAEILSLQEKLRVTENRL----QAVEADHTTQDV--------------NMIENNDNSDEKV-KLKQNVEETLEKLT 827
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIkelkKAIEELKKAKGKcpvcgrelteehrkELLEEYTAELKRIeKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 828 KREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELR 907
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 908 VLLLESprhsagvdRDLSREVHRAEWRMKEQKLQdDIKTLREKLlllgrERLSPDHRRYSMMDPSASDTEVARLRQRLLN 987
Cdd:PRK03918 560 ELEKKL--------DELEEELAELLKELEELGFE-SVEELEERL-----KELEPFYNEYLELKDAEKELEREEKELKKLE 625
|
..
gi 1207177220 988 TE 989
Cdd:PRK03918 626 EE 627
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
417-1010 |
3.58e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 417 NQLEEEKRKVEDLQ------FRVEEESITKGDLETQtkLEHARIRQLEQCLHLEKSKAERLQKELEEkmqttveEKTRVM 490
Cdd:COG4913 242 EALEDAREQIELLEpirelaERYAAARERLAELEYL--RAALRLWFAQRRLELLEAELEELRAELAR-------LEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 491 QLEEELALRKAEVEELQVrfQRGSSGsatdaedgepGITSETLvlrEQLLSVGRERREESSQLRERYEASLSTSQKEIER 570
Cdd:COG4913 313 RLEARLDALREELDELEA--QIRGNG----------GDRLEQL---EREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 571 LKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELkASLttdcgsgeingGEGEGSLP----EM 646
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI-ASL-----------ERRKSNIParllAL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 647 RAAL-EGLKM-EHQL----ELENLKAKHE-----------------------IDAAVMAKEREDLRSRLQELRDQLEDSE 697
Cdd:COG4913 446 RDALaEALGLdEAELpfvgELIEVRPEEErwrgaiervlggfaltllvppehYAAALRWVNRLHLRGRLVYERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 698 ENwKIQVETKSNQHTLEIKE------VSEKLQKAELRI-VDldkSQEE--------------------REK-VNQLLKEQ 749
Cdd:COG4913 526 PE-RPRLDPDSLAGKLDFKPhpfrawLEAELGRRFDYVcVD---SPEElrrhpraitragqvkgngtrHEKdDRRRIRSR 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 750 LML---AEKKMvdyEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTqdVNMIENNDNSDEKVKLKQ----NVEET 822
Cdd:COG4913 602 YVLgfdNRAKL---AALEAELAELEEELAEAEERLEALEAELDALQERREA--LQRLAEYSWDEIDVASAEreiaELEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 823 LEKLTKREKEVSTLTTQVDALKTQITALEEKVrlgektaDGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERS 902
Cdd:COG4913 677 LERLDASSDDLAALEEQLEELEAELEELEEEL-------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 903 LNELRVLLLESPRHSAGVDRDLSREVhraewrmkeQKLQDDIKTLREKLLLLGRERLSPDHRRYSMMDPSASD-TEVARL 981
Cdd:COG4913 750 LLEERFAAALGDAVERELRENLEERI---------DALRARLNRAEEELERAMRAFNREWPAETADLDADLESlPEYLAL 820
|
650 660 670
....*....|....*....|....*....|....*.
gi 1207177220 982 RQRLLNT-----EDALRNALEHN--QHVDQLVQAMR 1010
Cdd:COG4913 821 LDRLEEDglpeyEERFKELLNENsiEFVADLLSKLR 856
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
446-792 |
4.06e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 446 QTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMqttveEKTRVMQLEEELAlrkaevEELQVRFQRGSSGSATDAE-DG 524
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKM-----EQERLRQEKEEKA------REVERRRKLEEAEKARQAEmDR 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 525 EPGITSEtlvlrEQLLSVGRERREESSQLRERYEASLSTSQKEIerlkAITERQGQEISDLK-QRLQQATRENMEMMDSW 603
Cdd:pfam17380 332 QAAIYAE-----QERMAMERERELERIRQEERKRELERIRQEEI----AMEISRMRELERLQmERQQKNERVRQELEAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 604 KAKLdaLVGDHQRALEELKaslttdcgsgeinggegeGSLPEMRAALEGLKMEHQLELENLKAKHeidaavMAKEREDLR 683
Cdd:pfam17380 403 KVKI--LEEERQRKIQQQK------------------VEMEQIRAEQEEARQREVRRLEEERARE------MERVRLEEQ 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 684 SRLQELRDQLEDSEENWKIQVETKsnqhtleiKEVSEKLQKAELRIVDLDKSQEER-------EKVNQLLKEQLMLAEKK 756
Cdd:pfam17380 457 ERQQQVERLRQQEEERKRKKLELE--------KEKRDRKRAEEQRRKILEKELEERkqamieeERKRKLLEKEMEERQKA 528
|
330 340 350
....*....|....*....|....*....|....*.
gi 1207177220 757 MVDYEALQKAEAQSRAEIlSLQEKLRVTENRLQAVE 792
Cdd:pfam17380 529 IYEEERRREAEEERRKQQ-EMEERRRIQEQMRKATE 563
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
320-699 |
7.06e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 7.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 320 RTGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHlqyatetesnlq 399
Cdd:TIGR02169 651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI------------ 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 400 qvramlASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERL-QKELEEK 478
Cdd:TIGR02169 719 ------GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 479 MQTTVEEKTrvmQLEEELALRKAEVEELQVRFQRgSSGSATDAEDGEPGITSETLVLREQLLSVGRE------RREESSQ 552
Cdd:TIGR02169 793 IPEIQAELS---KLEEEVSRIEARLREIEQKLNR-LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEienlngKKEELEE 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 553 LRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQAtrenmemmdSWKA-KLDALVGDHQRALEELKASLTTDCGS 631
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL---------EAQIeKKRKRLSELKAKLEALEEELSEIEDP 939
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207177220 632 GEINGGEGEGSLPEMRAALEGLKMEHQLE-LE--NLKAKHEIDAAVMA-KEREDLRSRLQELRDQLEDSEEN 699
Cdd:TIGR02169 940 KGEDEEIPEEELSLEDVQAELQRVEEEIRaLEpvNMLAIQEYEEVLKRlDELKEKRAKLEEERKAILERIEE 1011
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
395-702 |
9.18e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 9.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 395 ESNLQQVRAMLASTQKdkmELANQLEEEKRKVEDLQ-----FRVEEESItkgDLETQTKLEHARIRQLEQclhlekskae 469
Cdd:COG3206 163 EQNLELRREEARKALE---FLEEQLPELRKELEEAEaaleeFRQKNGLV---DLSEEAKLLLQQLSELES---------- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 470 rlqkeleekmqttveektRVMQLEEELALRKAEVEELQVRFQRGSSGSATDAEDgePGITSetlvLREQLLSVGRERREE 549
Cdd:COG3206 227 ------------------QLAEARAELAEAEARLAALRAQLGSGPDALPELLQS--PVIQQ----LRAQLAELEAELAEL 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 550 SSQLRERYEaslstsqkEIERLKAiterqgqEISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLTTdc 629
Cdd:COG3206 283 SARYTPNHP--------DVIALRA-------QIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAE-- 345
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177220 630 gsgeinggegegsLPEMRAALEGLkmehQLELENLKAKHeidaavmakerEDLRSRLQELRDQLEDSEENWKI 702
Cdd:COG3206 346 -------------LPELEAELRRL----EREVEVARELY-----------ESLLQRLEEARLAEALTVGNVRV 390
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
324-507 |
1.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 324 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRA 403
Cdd:COG4942 43 LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 404 MLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQCLHLEKSKAERLQKELEEKMQTTV 483
Cdd:COG4942 123 ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLA 202
|
170 180
....*....|....*....|....
gi 1207177220 484 EEKTRVMQLEEELALRKAEVEELQ 507
Cdd:COG4942 203 RLEKELAELAAELAELQQEAEELE 226
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
391-624 |
1.27e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 391 ATETESNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQLEQclhleksKAER 470
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK-------EIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 471 LQKELEEKmQTTVEEKTRVMQleeelalRKAEVEELQVRFqrgSSGSATDAedgepgitsetLVLREQLLSVGRERREES 550
Cdd:COG4942 95 LRAELEAQ-KEELAELLRALY-------RLGRQPPLALLL---SPEDFLDA-----------VRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207177220 551 SQLRERYEAsLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALvgdhQRALEELKAS 624
Cdd:COG4942 153 EELRADLAE-LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL----AAELAELQQE 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
648-874 |
1.39e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 648 AALEGLKMEHQLELENLKAkhEIDAAvmAKEREDLRSRLQELRDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAEL 727
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQ--EIAEL--EKELAALKKEEKALLKQLAALERR-IAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 728 RIVDLDKSQEE-REKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENN 806
Cdd:COG4942 91 EIAELRAELEAqKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207177220 807 DNSDEKVKLKQNVEETLEKLTK----REKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAE 874
Cdd:COG4942 171 AERAELEALLAELEEERAALEAlkaeRQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
334-753 |
1.41e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.06 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 334 KISGTTALQEALkekQQHIEQLLA--------ERDLE--RAEVAKATSHICEVEKELAALKARHLQYATETESN--LQQV 401
Cdd:PRK11281 50 KQKLLEAEDKLV---QQDLEQTLAlldkidrqKEETEqlKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTlsLRQL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 402 RAMLASTQKDKMELANQLEEEKRKVEDLQFRVEeesitkgdlETQTKLEHA--RIRQLEQCLHleKSKAErlQKELEEkm 479
Cdd:PRK11281 127 ESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPE---------RAQAALYANsqRLQQIRNLLK--GGKVG--GKALRP-- 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 480 qttveekTRVMQLEEELALRkaeveELQVRFQRGSSGSATdaedgepgitsetlvlreQLLSVGRERREESSQLRERYEA 559
Cdd:PRK11281 192 -------SQRVLLQAEQALL-----NAQNDLQRKSLEGNT------------------QLQDLLQKQRDYLTARIQRLEH 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 560 SLSTSQKEI--ERLK--------AITERQGQEIS-------------DLKQRLQQATRE-NMEMMDSWKAK--LDALVgD 613
Cdd:PRK11281 242 QLQLLQEAInsKRLTlsektvqeAQSQDEAARIQanplvaqeleinlQLSQRLLKATEKlNTLTQQNLRVKnwLDRLT-Q 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 614 HQRALEE----LKASLTtdcgsgeinggegegslpemraaLEGLKMEHQLELENLKAKHEidaavMAKEREDLRSR---L 686
Cdd:PRK11281 321 SERNIKEqisvLKGSLL-----------------------LSRILYQQQQALPSADLIEG-----LADRIADLRLEqfeI 372
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 687 QELRDQLEDSEENWKiQVETKSNQhtleikEVSEKLQKAELRIVDldksqEEREKVNQLLKE---QLMLA 753
Cdd:PRK11281 373 NQQRDALFQPDAYID-KLEAGHKS------EVTDEVRDALLQLLD-----ERRELLDQLNKQlnnQLNLA 430
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
712-949 |
2.03e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.51 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 712 TLEIKEVSEKLQKAEL---RIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRL 788
Cdd:pfam07111 52 SLELEGSQALSQQAELisrQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 789 QaveadhttqdvNMIENNDNSDEKVKLKQnvEETLEKLTK-REKEVSTLTTQVDALKTQITALEEKvRLGEktadglIKE 867
Cdd:pfam07111 132 K-----------NLEEGSQRELEEIQRLH--QEQLSSLTQaHEEALSSLTSKAEGLEKSLNSLETK-RAGE------AKQ 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 868 KTRLEAELETMtkkshdaSGQLVNISQELlkkerslnELRVLLLESPRHSAGvdRDLSREVHRAEWRMKEQKLQDDIKTL 947
Cdd:pfam07111 192 LAEAQKEAELL-------RKQLSKTQEEL--------EAQVTLVESLRKYVG--EQVPPEVHSQTWELERQELLDTMQHL 254
|
..
gi 1207177220 948 RE 949
Cdd:pfam07111 255 QE 256
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
339-781 |
2.07e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 339 TALQEALKEKQQHIEQLL-------AERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMLASTQKD 411
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTqklqslcKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCE 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 412 KM------ELANQLEEEKRKVEDLQFRVEEESiTKGDLETQTKLEHARIRQL--EQCLHLEKSKAE---------RLQKE 474
Cdd:TIGR00618 455 KLekihlqESAQSLKEREQQLQTKEQIHLQET-RKKAVVLARLLELQEEPCPlcGSCIHPNPARQDidnpgpltrRMQRG 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 475 LEEKMQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATDAEDGE--PGITSETLVLREQLLSVGRERREESSQ 552
Cdd:TIGR00618 534 EQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEdiPNLQNITVRLQDLTEKLSEAEDMLACE 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 553 LRE----------RYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMmdswKAKLDALVGDHQRALEELK 622
Cdd:TIGR00618 614 QHAllrklqpeqdLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVL----PKELLASRQLALQKMQSEK 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 623 ASLTTDcgsgeinggegegsLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKeREDLRSRLQELRDQLEDSEENWKI 702
Cdd:TIGR00618 690 EQLTYW--------------KEMLAQCQTLLRELETHIEEYDREFNEIENASSSL-GSDLAAREDALNQSLKELMHQART 754
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 703 QVETKSNQHTLEIKEVSEKLQ---KAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAE----AQSRAEIL 775
Cdd:TIGR00618 755 VLKARTEAHFNNNEEVTAALQtgaELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQcetlVQEEEQFL 834
|
....*.
gi 1207177220 776 SLQEKL 781
Cdd:TIGR00618 835 SRLEEK 840
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
647-881 |
2.17e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 44.80 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 647 RAALEGLKMEHQLELENLKAKHEIDAAVMA--KEREDLRSRLQELRDQLEdseenwkiQVETKSNQHTLEIKEVSEKLQK 724
Cdd:pfam15905 55 KVKSLELKKKSQKNLKESKDQKELEKEIRAlvQERGEQDKRLQALEEELE--------KVEAKLNAAVREKTSLSASVAS 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 725 AELRIVDLDK---------SQEEREKVNQLLKEQLMLAEKKM---------------VDYEALQKAEAQSRAEILSLQEK 780
Cdd:pfam15905 127 LEKQLLELTRvnellkakfSEDGTQKKMSSLSMELMKLRNKLeakmkevmakqegmeGKLQVTQKNLEHSKGKVAQLEEK 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 781 LRVTEnRLQAVEADHTTQDVNMIENNDNSDEKV-KLKQNVEETLEKLTKREKEVSTLTTQVDA----LKTQITALEEKVR 855
Cdd:pfam15905 207 LVSTE-KEKIEEKSETEKLLEYITELSCVSEQVeKYKLDIAQLEELLKEKNDEIESLKQSLEEkeqeLSKQIKDLNEKCK 285
|
250 260 270
....*....|....*....|....*....|
gi 1207177220 856 LGEKTADGLIKE----KTRLEAELETMTKK 881
Cdd:pfam15905 286 LLESEKEELLREyeekEQTLNAELEELKEK 315
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
469-830 |
2.24e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 469 ERLQKELEEKMQTTVEEKTRVMQLEEELALRKAEVEElqvrfqrgssgsATDAEDGEPgiTSETLVLREQLLSVGRERRE 548
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ------------AKKALEYYQ--LKEKLELEEEYLLYLDYLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 549 ESSQLRERyeaslstsqKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLTTD 628
Cdd:pfam02463 235 NEERIDLL---------QELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 629 CGSGEINGGEGEGSLPEMRAALEGLKMEHQ--LELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEEnwkiqvet 706
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEeiEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLA-------- 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 707 ksnQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMvDYEALQKAEAQSRAEILSLQEKLRVTEN 786
Cdd:pfam02463 378 ---KKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEK-KEELEILEEEEESIELKQGKLTEEKEEL 453
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1207177220 787 RLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLTKRE 830
Cdd:pfam02463 454 EKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
315-591 |
2.50e-04 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 45.23 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 315 GGRPSRTGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKAtSHICEVEKELAALKArHLQYATET 394
Cdd:pfam09726 340 SSNSSPRSHSHNSGSVTSSSSSKNSKKQKGPGGKSGARHKDPAENCIPNNQLSKP-DALVRLEQDIKKLKA-ELQASRQT 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 395 ESNLQQ-----------VRAMLASTQKDKMELANQLEE-------EKRKVEDLQFRVEEESITKGDLETQTKLEHARIRQ 456
Cdd:pfam09726 418 EQELRSqissltslersLKSELGQLRQENDLLQTKLHNavsakqkDKQTVQQLEKRLKAEQEARASAEKQLAEEKKRKKE 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 457 LEQCLHLEKSKAERLQKELEEKMQTTVEE-KTRVMQLEEELALRKAEVEELQVRFQrgssgSATDAEDGEPgiTSETLVl 535
Cdd:pfam09726 498 EEATAARAVALAAASRGECTESLKQRKRElESEIKKLTHDIKLKEEQIRELEIKVQ-----ELRKYKESEK--DTEVLM- 569
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177220 536 reQLLSVGRERREE-----SSQLRERYE--ASLSTSQKEIERLKAITERQGQEISDLKQRLQQ 591
Cdd:pfam09726 570 --SALSAMQDKNQHlenslSAETRIKLDlfSALGDAKRQLEIAQGQIYQKDQEIKDLKQKIAE 630
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
678-911 |
2.50e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 678 EREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLE-IKEVSEKLQKAELRIVDLDksqeerekvnqllkeqlmlAEKK 756
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEpIRELAERYAAARERLAELE-------------------YLRA 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 757 MVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIE-----NNDNSDEKVKLKQNVEETLEKLTKREK 831
Cdd:COG4913 280 ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEleaqiRGNGGDRLEQLEREIERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 832 EVSTLTTQVDALKTQIT----ALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQEL--LKKERSLNE 905
Cdd:COG4913 360 RRARLEALLAALGLPLPasaeEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIasLERRKSNIP 439
|
....*.
gi 1207177220 906 LRVLLL 911
Cdd:COG4913 440 ARLLAL 445
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
451-992 |
3.00e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.73 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 451 HARIRQLEQCLHLEKSKAERLQKELEEKMQTTV-----------EEKTRVMQLEEELALR----KAEVEELQVRFQRGSS 515
Cdd:pfam05557 8 KARLSQLQNEKKQMELEHKRARIELEKKASALKrqldresdrnqELQKRIRLLEKREAEAeealREQAELNRLKKKYLEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 516 GSATDAEDgepgiTSETLVLREQLLSVGRERREESSQLrERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQatre 595
Cdd:pfam05557 88 LNKKLNEK-----ESQLADAREVISCLKNELSELRRQI-QRAELELQSTNSELEELQERLDLLKAKASEAEQLRQN---- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 596 nmemmdsWKAKLDALVGDHQRALE-ELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKmEHQLELENLKAKHEIdaav 674
Cdd:pfam05557 158 -------LEKQQSSLAEAEQRIKElEFEIQSQEQDSEIVKNSKSELARIPELEKELERLR-EHNKHLNENIENKLL---- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 675 MAKEREDLRSRLqelrDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAELRIVdldKSQEEREKVNQLLKEQLMLAE 754
Cdd:pfam05557 226 LKEEVEDLKRKL----EREEKYREE-AATLELEKEKLEQELQSWVKLAQDTGLNLR---SPEDLSRRIEQLQQREIVLKE 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 755 KK---MVDYEALQKAE-------AQSRAEILSLQEKLRVTEN---RLQAVEADHTTQDVNMIENNDNSDEkvklKQNVEE 821
Cdd:pfam05557 298 ENsslTSSARQLEKARreleqelAQYLKKIEDLNKKLKRHKAlvrRLQRRVLLLTKERDGYRAILESYDK----ELTMSN 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 822 TLEKLTKREKEVSTLTTQVDALKTQITALEEKVrlgEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKer 901
Cdd:pfam05557 374 YSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVA---EEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRR-- 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 902 slnELRVLLLESPRhsagvdrdLSREVHRAEWRMKEQKLQDDIKTLREKLLLLgRERLSPDHRRYSMMDPSASDTEVARL 981
Cdd:pfam05557 449 ---KLETLELERQR--------LREQKNELEMELERRCLQGDYDPKKTKVLHL-SMNPAAEAYQQRKNQLEKLQAEIERL 516
|
570
....*....|.
gi 1207177220 982 RQRLLNTEDAL 992
Cdd:pfam05557 517 KRLLKKLEDDL 527
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
545-960 |
3.21e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.81 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 545 ERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISdlkqrLQQATRENMEM-MDSWKAKLDALVGDHQRALEELKA 623
Cdd:pfam10174 95 QDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELF-----LLRKTLEEMELrIETQKQTLGARDESIKKLLEMLQS 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 624 SLTTDCGSGEINGGEGEGSLPEMRAA-LEGLKmeHQLELENLKAkheidaavmakeREDLRSRLQELRDQledseenwki 702
Cdd:pfam10174 170 KGLPKKSGEEDWERTRRIAEAEMQLGhLEVLL--DQKEKENIHL------------REELHRRNQLQPDP---------- 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 703 qVETKSNQHTLEIKEVseklqkaelRIVDLDKSQEEREKVNQLLKEQLMLA----EKKMVDYEALQKAEAQSRAEILSLQ 778
Cdd:pfam10174 226 -AKTKALQTVIEMKDT---------KISSLERNIRDLEDEVQMLKTNGLLHtedrEEEIKQMEVYKSHSKFMKNKIDQLK 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 779 EKLRVTENRLQAVEADHTTQdvnmieNNDNSDEKvklkQNVEETLEKLTKREKEVSTLTTQVDALKTQitaLEEKVRLGE 858
Cdd:pfam10174 296 QELSKKESELLALQTKLETL------TNQNSDCK----QHIEVLKESLTAKEQRAAILQTEVDALRLR---LEEKESFLN 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 859 KTADGLI---KEKTRLEAELETMT-------KKSHDASGQLVNISQELLKKERSLNELRVLLLESPRHSAGVDRDLS--- 925
Cdd:pfam10174 363 KKTKQLQdltEEKSTLAGEIRDLKdmldvkeRKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTtle 442
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1207177220 926 ---REVHRAEWRMKEQKLQDD-------------IKTLREKLLLLGRERLS 960
Cdd:pfam10174 443 ealSEKERIIERLKEQREREDrerleeleslkkeNKDLKEKVSALQPELTE 493
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
398-906 |
3.33e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 398 LQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGD-LETQTKLEhARIRQLEQCLHLEKSKAERLQKELE 476
Cdd:TIGR00618 175 LDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHErKQVLEKEL-KHLREALQQTQQSHAYLTQKREAQE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 477 EKMQTTVEEKTRVMQlEEELALRKAEVEELQVR--FQRGSSGSATDAE-------DGEPGITS--ETLVLREQLLSVGRE 545
Cdd:TIGR00618 254 EQLKKQQLLKQLRAR-IEELRAQEAVLEETQERinRARKAAPLAAHIKavtqieqQAQRIHTElqSKMRSRAKLLMKRAA 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 546 RREESSQLRERyEASLSTSQKEIERL----------KAITERQGQEISDLKQRLQQAT--RENMEMMDSWKAKLDALVGD 613
Cdd:TIGR00618 333 HVKQQSSIEEQ-RRLLQTLHSQEIHIrdahevatsiREISCQQHTLTQHIHTLQQQKTtlTQKLQSLCKELDILQREQAT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 614 ------HQRALEELKASLTTDCgsgeinggegegSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSRLQ 687
Cdd:TIGR00618 412 idtrtsAFRDLQGQLAHAKKQQ------------ELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 688 ELRDQledsEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEqlmlaekkmvdYEALQKAE 767
Cdd:TIGR00618 480 QIHLQ----ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQT-----------YAQLETSE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 768 AQSRAEILSLQEKLRVTENRLQavEADHTTQDVNMIENndNSDEKVKLKQNVEETLEKLTK---REKEVSTLTTQVDALK 844
Cdd:TIGR00618 545 EDVYHQLTSERKQRASLKEQMQ--EIQQSFSILTQCDN--RSKEDIPNLQNITVRLQDLTEklsEAEDMLACEQHALLRK 620
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177220 845 TQITALEEKVRLGEKT-ADGLIKEKTRLEAELETMTKKSHDASGQLVNIsQELLKKERSLNEL 906
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQcSQELALKLTALHALQLTLTQERVREHALSIRV-LPKELLASRQLAL 682
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
340-892 |
3.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 340 ALQEALKEKQQHIEQLL-AERDLERAEvakatshicEVEKELAALKARHLQYAtETESNLQQVRAMLASTQKDKMELA-N 417
Cdd:COG4913 222 DTFEAADALVEHFDDLErAHEALEDAR---------EQIELLEPIRELAERYA-AARERLAELEYLRAALRLWFAQRRlE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 418 QLEEEKRKVEDLQFRVEEEsitKGDLETQTKLEHARIRQLEQclHLEKSKAERLQkELEEKMQttveektrvmQLEEELA 497
Cdd:COG4913 292 LLEAELEELRAELARLEAE---LERLEARLDALREELDELEA--QIRGNGGDRLE-QLEREIE----------RLERELE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 498 LRKAEVEELQVRFQRGSSGSATDAEDGEpgitsetlVLREQLlsvgRERREESSQLRERYEASLSTSQKEIERLKAITER 577
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASAEEFA--------ALRAEA----AALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 578 QGQEISDLKQRLQQATRENMEMMDSWKAKL----DAL--VGDH--------------QRALEELKASLTTDcgsgeingg 637
Cdd:COG4913 424 LEAEIASLERRKSNIPARLLALRDALAEALgldeAELpfVGELievrpeeerwrgaiERVLGGFALTLLVP--------- 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 638 egEGSLPEMRAALEGLKMEHQLELEnlKAKHEIDAAVMAKERED----------------LRSRL------------QEL 689
Cdd:COG4913 495 --PEHYAAALRWVNRLHLRGRLVYE--RVRTGLPDPERPRLDPDslagkldfkphpfrawLEAELgrrfdyvcvdspEEL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 690 RD---------QLEDSEENWKIQVETK---------SNQHTLEIKEvsEKLQKAELRIVDLDKSQEEREKVNQLLKEQLm 751
Cdd:COG4913 571 RRhpraitragQVKGNGTRHEKDDRRRirsryvlgfDNRAKLAALE--AELAELEEELAEAEERLEALEAELDALQERR- 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 752 laekkmvdyEALQKAEAQSRAEI--LSLQEKLRVTENRLQAVEADHttQDVNMIEnndnsDEKVKLKQNVEETLEKLTKR 829
Cdd:COG4913 648 ---------EALQRLAEYSWDEIdvASAEREIAELEAELERLDASS--DDLAALE-----EQLEELEAELEELEEELDEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 830 EKEVSTLTTQVDALKTQITALEEKV-----------------RLGEKTADGLIKEKTR-LEAELETMTKKSHDASGQLVN 891
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLeaaedlarlelralleeRFAAALGDAVERELREnLEERIDALRARLNRAEEELER 791
|
.
gi 1207177220 892 I 892
Cdd:COG4913 792 A 792
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
339-878 |
4.32e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 4.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 339 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKArHLQYATETESNLQQVRamlASTQKDKMELANQ 418
Cdd:pfam01576 260 NNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKT-ELEDTLDTTAAQQELR---SKREQEVTELKKA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 419 LEEEKRkVEDLQFRVEEESITKGDLETQTKLEHARIRQleqcLHLEKSKA--ERLQKELEEKMQTTVEEKTRVMQLEEEL 496
Cdd:pfam01576 336 LEEETR-SHEAQLQEMRQKHTQALEELTEQLEQAKRNK----ANLEKAKQalESENAELQAELRTLQQAKQDSEHKRKKL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 497 alrKAEVEELQVRFQRGSSGSATDAEDgepgitsetlvlreqlLSVGRERREESSQLRERYEASLSTSQKEIERLkaite 576
Cdd:pfam01576 411 ---EGQLQELQARLSESERQRAELAEK----------------LSKLQSELESVSSLLNEAEGKNIKLSKDVSSL----- 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 577 rqGQEISDLKQRLQQATRENMEmmdswkakldalVGDHQRALEELKASLTTDCGSGEinggegegslpEMRAALEGLKME 656
Cdd:pfam01576 467 --ESQLQDTQELLQEETRQKLN------------LSTRLRQLEDERNSLQEQLEEEE-----------EAKRNVERQLST 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 657 HQLELENLKAKHEIDAAVMakeredlrsrlqelrDQLEDSEENWKIQVETKSNQhtLEIKEVS-EKLQKAELRI------ 729
Cdd:pfam01576 522 LQAQLSDMKKKLEEDAGTL---------------EALEEGKKRLQRELEALTQQ--LEEKAAAyDKLEKTKNRLqqeldd 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 730 --VDLDksqEEREKVNQLLKEQ----LMLAEKKMVD---YEALQKAEAQSR---AEILSLQEKLRVTENRLQAVEADHTT 797
Cdd:pfam01576 585 llVDLD---HQRQLVSNLEKKQkkfdQMLAEEKAISaryAEERDRAEAEARekeTRALSLARALEEALEAKEELERTNKQ 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 798 QDVNMienndnsDEKVKLKQNVEETLEKLtkrEKEVSTLTTQVDALKTQITALEEKVRLGEKTadglikeKTRLEAELET 877
Cdd:pfam01576 662 LRAEM-------EDLVSSKDDVGKNVHEL---ERSKRALEQQVEEMKTQLEELEDELQATEDA-------KLRLEVNMQA 724
|
.
gi 1207177220 878 M 878
Cdd:pfam01576 725 L 725
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
744-907 |
4.50e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 744 QLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEAdhttqdvnMIENNDNSDEKVKLKQNVEET- 822
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK--------LLQLLPLYQELEALEAELAELp 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 823 --LEKLTKREKEVSTLTTQVDALKTQITALEEKVrlgektADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKE 900
Cdd:COG4717 146 erLEELEERLEELRELEEELEELEAELAELQEEL------EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ 219
|
....*..
gi 1207177220 901 RSLNELR 907
Cdd:COG4717 220 EELEELE 226
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
343-496 |
4.59e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 343 EALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKE--------------LAALKARHLQYATETE------------S 396
Cdd:PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDiedpsaalnklntaAAKIKSKIEQFQKVIKmyekggvcptctQ 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 397 NLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEE-ESITKGDLETQTKleharIRQLEQCLHLEKSKAERLQKEL 475
Cdd:PHA02562 293 QISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEfNEQSKKLLELKNK-----ISTNKQSLITLVDKAKKVKAAI 367
|
170 180
....*....|....*....|.
gi 1207177220 476 EEKMQTTVEEKTRVMQLEEEL 496
Cdd:PHA02562 368 EELQAEFVDNAEELAKLQDEL 388
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
345-556 |
4.76e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 345 LKEKQQHIEQLLAE---------RDLERAEVAKATSHIcEVEKELAALKARHLQYATETESNLQQVRAMlastQKDKMEL 415
Cdd:pfam17380 355 QEERKRELERIRQEeiameisrmRELERLQMERQQKNE-RVRQELEAARKVKILEEERQRKIQQQKVEM----EQIRAEQ 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 416 ANQLEEEKRKVEDLQFRvEEESITKGDLETQTKLEHARIRQLEQ---CLHLEKSKAER----------LQKELEEKMQTT 482
Cdd:pfam17380 430 EEARQREVRRLEEERAR-EMERVRLEEQERQQQVERLRQQEEERkrkKLELEKEKRDRkraeeqrrkiLEKELEERKQAM 508
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207177220 483 VEEKTRVMQLEEELALRKAEVEELQVRfqrgssgSATDAEDGEPGITSETLVLREQLLSVGRERREESSQLRER 556
Cdd:pfam17380 509 IEEERKRKLLEKEMEERQKAIYEEERR-------REAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
677-865 |
5.11e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 677 KEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLE--IKEVSEKLQKAELRIVDLDKSQEEREKVNQL--LKEQLML 752
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaeLEELREELEKLEKLLQLLPLYQELEALEAELaeLPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 753 AEKKMVDYEALQKaeaqsraEILSLQEKLRVTENRLQAVEADHTTQDVNMIEnnDNSDEKVKLKQNVEETLEKLTKREKE 832
Cdd:COG4717 151 LEERLEELRELEE-------ELEELEAELAELQEELEELLEQLSLATEEELQ--DLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190
....*....|....*....|....*....|...
gi 1207177220 833 VSTLTTQVDALKTQITALEEKVRLGEKTADGLI 865
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLI 254
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
317-598 |
5.30e-04 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 43.91 E-value: 5.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 317 RPSRTGLLTETSSRYARKISGTTALQEALKEKQQHIEqllAERDLERAevakatsHICEVEKELAALKARH--LQYATET 394
Cdd:pfam05622 43 RLDQLESGDDSGTPGGKKYLLLQKQLEQLQEENFRLE---TARDDYRI-------KCEELEKEVLELQHRNeeLTSLAEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 395 ESNLQ-QVRAMLASTQKDKMeLANQLEEEKRKVEDL-----QFRVEEESIT-----KGDLETQTKLEHARIRQLEQC--- 460
Cdd:pfam05622 113 AQALKdEMDILRESSDKVKK-LEATVETYKKKLEDLgdlrrQVKLLEERNAeymqrTLQLEEELKKANALRGQLETYkrq 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 461 -------LHLEKSKAERLQ---KELEEKMQTTVEEKTRVmqLEEELALRKAeVEELQVRFQRGSSGSATDAEDGEPGITS 530
Cdd:pfam05622 192 vqelhgkLSEESKKADKLEfeyKKLEEKLEALQKEKERL--IIERDTLRET-NEELRCAQLQQAELSQADALLSPSSDPG 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 531 ETLV-------LREQLLSVGRE------RREESSQLR-ERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATREN 596
Cdd:pfam05622 269 DNLAaeimpaeIREKLIRLQHEnkmlrlGQEGSYRERlTELQQLLEDANRRKNELETQNRLANQRILELQQQVEELQKAL 348
|
..
gi 1207177220 597 ME 598
Cdd:pfam05622 349 QE 350
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
330-595 |
6.79e-04 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 43.48 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 330 RYARKISGTTALQEALKEKQQHIEQLLAERDL--ERAEVAKATSHicEVEK-------ELAALKAR-HLQYATETESNLQ 399
Cdd:pfam05701 132 RHAAAVAELKSVKEELESLRKEYASLVSERDIaiKRAEEAVSASK--EIEKtveeltiELIATKESlESAHAAHLEAEEH 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 400 QVRAMLASTQkDKMELANQLEEEKRKVEdlqfRVEEESITKGDLETqtKLEHArirqLEQCLHLEKSKAERLQKELEEKM 479
Cdd:pfam05701 210 RIGAALAREQ-DKLNWEKELKQAEEELQ----RLNQQLLSAKDLKS--KLETA----SALLLDLKAELAAYMESKLKEEA 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 480 QTTVEEKTRVMQLEEELALRKAEVEElqvrfQRGSSGSATDaEDGEPGITSETL---VLRE-QLLSVGRERREESSQLRE 555
Cdd:pfam05701 279 DGEGNEKKTSTSIQAALASAKKELEE-----VKANIEKAKD-EVNCLRVAAASLrseLEKEkAELASLRQREGMASIAVS 352
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1207177220 556 RYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRE 595
Cdd:pfam05701 353 SLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQE 392
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
660-854 |
7.39e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 7.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 660 ELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDseenwkiqVETKSNQHTLEIKEVSEKLQKAElrivdldksqeer 739
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELED--------LEKEIKRLELEIEEVEARIKKYE------------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 740 ekvnqllkEQLMLAeKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHttqdvnmienndnSDEKVKLKQNV 819
Cdd:COG1579 80 --------EQLGNV-RNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEEL-------------AELEAELAELE 137
|
170 180 190
....*....|....*....|....*....|....*
gi 1207177220 820 EETLEKLTKREKEVSTLTTQVDALKTQITALEEKV 854
Cdd:COG1579 138 AELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
670-910 |
8.12e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 8.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 670 IDAAVMAKEREDLRSRLQEL-RDQLEDSEENWKI-------QVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREK 741
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLiEETENLAELIIDLeelklqeLKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 742 VNQLLKEQLMLAEKK------MVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKL 815
Cdd:pfam02463 239 IDLLQELLRDEQEEIesskqeIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 816 KQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRlgEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQE 895
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE--EELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 396
|
250
....*....|....*
gi 1207177220 896 LLKKERSLNELRVLL 910
Cdd:pfam02463 397 LELKSEEEKEAQLLL 411
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
342-588 |
9.96e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 9.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 342 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYatetesnlQQVRAMLASTQKdKMELANqLEE 421
Cdd:COG3096 367 EEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQY--------QQAVQALEKARA-LCGLPD-LTP 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 422 EKRKVEDLQFRVEEESITKGDLETQTKL--EHARIRQLEQCLHL--------EKSKAERLQKELEEKMQTTVEEKTRVMQ 491
Cdd:COG3096 437 ENAEDYLAAFRAKEQQATEEVLELEQKLsvADAARRQFEKAYELvckiagevERSQAWQTARELLRRYRSQQALAQRLQQ 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 492 LEEELA------LRKAEVEELQVRFQRGSSGSATDAEDGEpgitsetlvlreqllsvgrERREESSQLRERYEASLSTSQ 565
Cdd:COG3096 517 LRAQLAeleqrlRQQQNAERLLEEFCQRIGQQLDAAEELE-------------------ELLAELEAQLEELEEQAAEAV 577
|
250 260
....*....|....*....|...
gi 1207177220 566 KEIERLKAITERQGQEISDLKQR 588
Cdd:COG3096 578 EQRSELRQQLEQLRARIKELAAR 600
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
344-616 |
1.00e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 344 ALKEKQqhIEQllaerDLERAEVAKATSHICEVEKELAALKArhLQYATETESNLQQVRAMLASTQKDKMELANQLEEEK 423
Cdd:PRK10929 22 APDEKQ--ITQ-----ELEQAKAAKTPAQAEIVEALQSALNW--LEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNER 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 424 RKVEDLqfrveEESITKGDLETQT------KLEHARIRQLEQ-----------CLHLEKSKAERLQKELEEKMQT----- 481
Cdd:PRK10929 93 DEPRSV-----PPNMSTDALEQEIlqvssqLLEKSRQAQQEQdrareisdslsQLPQQQTEARRQLNEIERRLQTlgtpn 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 482 TVEEKTRVMQLEEELALRKAEVEELQVrfqrgSSGSATDAEdgepgitsETLVLREQLLSVGRERREESSQ-LRERYEas 560
Cdd:PRK10929 168 TPLAQAQLTALQAESAALKALVDELEL-----AQLSANNRQ--------ELARLRSELAKKRSQQLDAYLQaLRNQLN-- 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1207177220 561 lSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMD--SWKAKLDALVGDHQR 616
Cdd:PRK10929 233 -SQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQalNQQAQRMDLIASQQR 289
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
669-990 |
1.27e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 669 EIDAAVMAKERED-------LRSRLQELRDQLEDSEENWKIQVETKSNQhTLEIKEVSEKLQ-----KAELRIVDLDKSQ 736
Cdd:PRK02224 191 QLKAQIEEKEEKDlherlngLESELAELDEEIERYEEQREQARETRDEA-DEVLEEHEERREeletlEAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 737 EEREK------VNQLLKEQLMLAEKK--MVDYEALQKAEAQSRAEILS-LQEKLRVTENRLQAVEAD---HTTQDVNMIE 804
Cdd:PRK02224 270 TEREReelaeeVRDLRERLEELEEERddLLAEAGLDDADAEAVEARREeLEDRDEELRDRLEECRVAaqaHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 805 NNDNSDEKVKLKQNVEETLEKltkrekEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHD 884
Cdd:PRK02224 350 DADDLEERAEELREEAAELES------ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 885 ASGQLVNISQELLKKERSLNELRVLLLESPRHSAGVDRDLSREVHRA-EWRMKEQKLQDDIKTLREKllllgRERLSPDH 963
Cdd:PRK02224 424 LREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIeEDRERVEELEAELEDLEEE-----VEEVEERL 498
|
330 340
....*....|....*....|....*..
gi 1207177220 964 RRYSmmDPSASDTEVARLRQRLLNTED 990
Cdd:PRK02224 499 ERAE--DLVEAEDRIERLEERREDLEE 523
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
558-997 |
1.35e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 558 EASLSTSQKEIERLKA-ITERQGQEISDLKQRLQQATRENmemmDSWKAKLDALVGDHQRaLEELKASLTT-DCGSGEIN 635
Cdd:COG4717 48 LERLEKEADELFKPQGrKPELNLKELKELEEELKEAEEKE----EEYAELQEELEELEEE-LEELEAELEElREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 636 GGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMaKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLEI 715
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELE-EELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 716 KEVSEKLQKAELRIVDLDKSQEE-REKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEA- 793
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEElEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 794 --------------DHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLT-KREKEVSTLTTQVDALKTQITALEEKVRLGE 858
Cdd:COG4717 282 vlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 859 KTAdgLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLLEsprhSAGVDRDLSREVHRAEWRMKEQ 938
Cdd:COG4717 362 ELQ--LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEE----LLGELEELLEALDEEELEEELE 435
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1207177220 939 KLQDDIKTLREKLLLLGRERLSPDHRRYSMmdpsASDTEVARLRQRLLNTEDALRNALE 997
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQL----EEDGELAELLQELEELKAELRELAE 490
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
339-620 |
1.41e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 339 TALQEALKEKQQHIEQLLAERDLE----RAEVAKATSHICEVEKELAALKaRHLQYATETESNLQQVRAMLASTQKDKME 414
Cdd:pfam10174 439 TTLEEALSEKERIIERLKEQREREdrerLEELESLKKENKDLKEKVSALQ-PELTEKESSLIDLKEHASSLASSGLKKDS 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 415 LANQLEEEkrkvedLQFRVEEESITKGDLETQTKLEHA---------RIRQLEQCLHLEKSKAERLQKELEEKMqttveE 485
Cdd:pfam10174 518 KLKSLEIA------VEQKKEECSKLENQLKKAHNAEEAvrtnpeindRIRLLEQEVARYKEESGKAQAEVERLL-----G 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 486 KTRVMQLEEELALRK-AEVEELQVRFQRGSSGSATDAEDGEPGITSEtlvlREQLLSVGRERREESSQlreryeaslSTS 564
Cdd:pfam10174 587 ILREVENEKNDKDKKiAELESLTLRQMKEQNKKVANIKHGQQEMKKK----GAQLLEEARRREDNLAD---------NSQ 653
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1207177220 565 QKEIERLKAITERQGQEISDLKQRLQQAtrenMEMMDSWKAKLDALVGDHQRALEE 620
Cdd:pfam10174 654 QLQLEELMGALEKTRQELDATKARLSST----QQSLAEKDGHLTNLRAERRKQLEE 705
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
536-993 |
1.75e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 536 REQLLSVGRERREEssqLRERYeASLSTSQKEIERLKAITERQ-------------GQEISDLKQRLQQATREnmemmds 602
Cdd:PRK04863 784 REKRIEQLRAEREE---LAERY-ATLSFDVQKLQRLHQAFSRFigshlavafeadpEAELRQLNRRRVELERA------- 852
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 603 wkakLDALVGDHQRALEELKASlttdcgsgeinggegegslpemRAALEGLkmehqlelenlkAKHEIDAAVMAkeREDL 682
Cdd:PRK04863 853 ----LADHESQEQQQRSQLEQA----------------------KEGLSAL------------NRLLPRLNLLA--DETL 892
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 683 RSRLQELRDQLEDSEENwkiQVETKSNQHTLE-IKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYE 761
Cdd:PRK04863 893 ADRVEEIREQLDEAEEA---KRFVQQHGNALAqLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRA 969
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 762 ALQKAEAQSR-AEILSLQEKLRVtenRLQAVEADHTTQDVNMIENNDNSDEK----VKLKQNVEETLEKLTKREKEVSTL 836
Cdd:PRK04863 970 HFSYEDAAEMlAKNSDLNEKLRQ---RLEQAEQERTRAREQLRQAQAQLAQYnqvlASLKSSYDAKRQMLQELKQELQDL 1046
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 837 TTQVDAlktqitALEEKVRLGEKTADG-----------LIKEKTRLEAELETMTKK-------SHDASGQLVN---ISQE 895
Cdd:PRK04863 1047 GVPADS------GAEERARARRDELHArlsanrsrrnqLEKQLTFCEAEMDNLTKKlrklerdYHEMREQVVNakaGWCA 1120
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 896 LLKK------ERSLN--ELRVLLLESPRhsAGVDRDLSR---EVHRAEWRMKEQKLQDDIKTLREKLLL------LGRER 958
Cdd:PRK04863 1121 VLRLvkdngvERRLHrrELAYLSADELR--SMSDKALGAlrlAVADNEHLRDVLRLSEDPKRPERKVQFyiavyqHLRER 1198
|
490 500 510
....*....|....*....|....*....|....*....
gi 1207177220 959 LSPDHRRYSmmDP----SASDTEVARLRQRLLNTEDALR 993
Cdd:PRK04863 1199 IRQDIIRTD--DPveaiEQMEIELSRLTEELTSREQKLA 1235
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
731-906 |
1.91e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 731 DLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSD 810
Cdd:COG3883 24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 811 --EKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQ 888
Cdd:COG3883 104 ylDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170
....*....|....*...
gi 1207177220 889 LVNISQELLKKERSLNEL 906
Cdd:COG3883 184 LAQLSAEEAAAEAQLAEL 201
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
618-756 |
2.36e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.16 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 618 LEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSE 697
Cdd:smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177220 698 EnwkiqVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVN----QLLKEQLMLAEKK 756
Cdd:smart00787 229 E-----LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTfkeiEKLKEQLKLLQSL 286
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
807-1012 |
2.45e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 807 DNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDAS 886
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 887 GQLVNISQELLKKERSlNELRVLLleSPRHSAGVDRDLSREVHRAEWRMKE-QKLQDDIKTLREKLLLLGRER------- 958
Cdd:COG4942 104 EELAELLRALYRLGRQ-PPLALLL--SPEDFLDAVRRLQYLKYLAPARREQaEELRADLAELAALRAELEAERaeleall 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1207177220 959 --LSPDHRRYSmMDPSASDTEVARLRQRLLNTEDALRNALEHNQHVDQLVQAMRTR 1012
Cdd:COG4942 181 aeLEEERAALE-ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| TACC_C |
pfam05010 |
Transforming acidic coiled-coil-containing protein (TACC), C-terminal; This entry represents a ... |
565-746 |
3.20e-03 |
|
Transforming acidic coiled-coil-containing protein (TACC), C-terminal; This entry represents a C-terminal domain found in the the proteins TACC 1, 2 and 3 (TACC1-3). TACC1 is found concentrated in the centrosomes of eukaryotes which may play a conserved role in organizing centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1). TACC 3 from Xenopus laevis, also known as maskin, associates XMAP215 and promotes efficient microtubule elongation during mitosis. Maskin is also found to bind CPEB and elF-4E. Interestingly, the functional homolog (Alp7) in Schizosaccharomyces pombe (not included in this entry) has been shown to be required for organization of bipolar spindles.
Pssm-ID: 461517 [Multi-domain] Cd Length: 201 Bit Score: 40.04 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 565 QKEIERLKAITERQGQEISDLKQRLQQATRENMEM---MDSWKAKLDALVGDHQRALEELKASLttdcGSGEINGGEGEG 641
Cdd:pfam05010 7 DAALEKARNEIEEKELEINELKAKYEELRRENLEMrkiVAEFEKTIAQMIEEKQKQKELEHAEI----QKVLEEKDQALA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 642 SLPEMRAALEGL--KMEHQLE-LENLKAKHEidaaVMAKEREDLRSRLQelrdQLEDSEENWKIQVETKSNQHTLEIKEV 718
Cdd:pfam05010 83 DLNSVEKSFSDLfkRYEKQKEvISGYKKNEE----SLKKCAQDYLARIK----KEEQRYQALKAHAEEKLDQANEEIAQV 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 1207177220 719 SEK-----------LQKAELRIVDLDKSQEEREKVNQLL 746
Cdd:pfam05010 155 RSKakaetaalqasLRKEQMKVQSLERQLEQKTKENEEL 193
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
339-496 |
3.39e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 41.58 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 339 TALQEALKEKqqhIEQLLAERDLERAEVAKATshiceveKELAALKARhLQyatETESNLQQVRAMLASTQKDKMELANQ 418
Cdd:pfam05911 680 TEENKRLKEE---FEQLKSEKENLEVELASCT-------ENLESTKSQ-LQ---ESEQLIAELRSELASLKESNSLAETQ 745
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207177220 419 LEEEKRKVEdlqfrveeesitkgDLETQTKLEHARIRQLEQclhleksKAERLQKELEEKMQTTVEEKTRVMQLEEEL 496
Cdd:pfam05911 746 LKCMAESYE--------------DLETRLTELEAELNELRQ-------KFEALEVELEEEKNCHEELEAKCLELQEQL 802
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
643-834 |
3.52e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 643 LPEMRAALEglkmEHQLELENLKAKHEI-----DAAVMAKEREDLRSRLQELRDQLEDSEENWKiQVETKSNQHTLEIKE 717
Cdd:COG3206 184 LPELRKELE----EAEAALEEFRQKNGLvdlseEAKLLLQQLSELESQLAEARAELAEAEARLA-ALRAQLGSGPDALPE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 718 VSEKLQKAELRIvDLDKSQEEREKVNQLLKE---QLMLAEKKMVDYEALQKAEAQSRaeILSLQEKLRVTENRLQAVEAD 794
Cdd:COG3206 259 LLQSPVIQQLRA-QLAELEAELAELSARYTPnhpDVIALRAQIAALRAQLQQEAQRI--LASLEAELEALQAREASLQAQ 335
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1207177220 795 HTTQDVNMIENNDNSDEKVKLKQNVE---ETLEKLTKREKEVS 834
Cdd:COG3206 336 LAQLEARLAELPELEAELRRLEREVEvarELYESLLQRLEEAR 378
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
763-907 |
3.76e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 763 LQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLTKrEKEVSTLTTQVDA 842
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-NKEYEALQKEIES 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207177220 843 LKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELR 907
Cdd:COG1579 101 LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER 165
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
348-744 |
4.44e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 348 KQQHIEQLLAERDLERAEVAKATSHICEVEKELAALK---ARHLQYATETESNlqqvrAMLASTQKDKMELANQLEeekr 424
Cdd:PRK04863 784 REKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSrfiGSHLAVAFEADPE-----AELRQLNRRRVELERALA---- 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 425 kvedlqfrveeesitkgDLETQTKLEHARIRQLEQCLHLekskAERLQKELEEKMQTTVEEktRVMQLEEELAlrKAEVE 504
Cdd:PRK04863 855 -----------------DHESQEQQQRSQLEQAKEGLSA----LNRLLPRLNLLADETLAD--RVEEIREQLD--EAEEA 909
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 505 ELQVRfQRGSsgsatdaedgepgitseTLVLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITErqgqeisd 584
Cdd:PRK04863 910 KRFVQ-QHGN-----------------ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTE-------- 963
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 585 LKQRL--------QQATRENMEMMDSWKAKLDALVGDHQRALEELKASlttdcgsgeinggegEGSLPEMRAALEGLKME 656
Cdd:PRK04863 964 VVQRRahfsyedaAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQA---------------QAQLAQYNQVLASLKSS 1028
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 657 HQLELENLK-AKHEIDA---AVMAKEREDLRSRLQELRDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAElrivdl 732
Cdd:PRK04863 1029 YDAKRQMLQeLKQELQDlgvPADSGAEERARARRDELHARLSANRSR-RNQLEKQLTFCEAEMDNLTKKLRKLE------ 1101
|
410
....*....|..
gi 1207177220 733 DKSQEEREKVNQ 744
Cdd:PRK04863 1102 RDYHEMREQVVN 1113
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
677-942 |
4.84e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 677 KEREDLRSRLQELRDQLEDSEENWKIQVETKSNqhtlEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKK 756
Cdd:TIGR00606 712 KSTESELKKKEKRRDEMLGLAPGRQSIIDLKEK----EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 757 MVDYEALQKAEAQSRaeilSLQEKLRVTENRLQAVEADHTTQDVNMiENNDNSDEKVKLKQNVEETLEKLTKREKEVSTL 836
Cdd:TIGR00606 788 LTDVTIMERFQMELK----DVERKIAQQAAKLQGSDLDRTVQQVNQ-EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 837 TTQVDALKTqitaleEKVRLGE--KTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLLESP 914
Cdd:TIGR00606 863 KSKTNELKS------EKLQIGTnlQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN 936
|
250 260 270
....*....|....*....|....*....|
gi 1207177220 915 RHSAGVDRDLSREVHRAEWRMK--EQKLQD 942
Cdd:TIGR00606 937 KKAQDKVNDIKEKVKNIHGYMKdiENKIQD 966
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
341-512 |
5.10e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.39 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 341 LQEALKEK-QQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARH---LQYATETESN----LQQVRAMLASTQKDK 412
Cdd:smart00787 141 LLEGLKEGlDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELrqlKQLEDELEDCdpteLDRAKEKLKKLLQEI 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 413 MELANQLEEEKRKVEDLQFRVEEESITKGDLETQTKleHARiRQLEQCLHLEKSKAERLQkeleekmqttveEKTRVMQL 492
Cdd:smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA--EAE-KKLEQCRGFTFKEIEKLK------------EQLKLLQS 285
|
170 180
....*....|....*....|
gi 1207177220 493 EEELALRKAEVEELQVRFQR 512
Cdd:smart00787 286 LTGWKITKLSGNTLSMTYDR 305
|
|
| CortBP2 |
pfam09727 |
Cortactin-binding protein-2; This entry is the first approximately 250 residues of ... |
399-492 |
5.19e-03 |
|
Cortactin-binding protein-2; This entry is the first approximately 250 residues of cortactin-binding protein 2. In addition to being a positional candidate for autism this protein is expressed at highest levels in the brain in humans. The human protein has six associated ankyrin repeat domains pfam00023 towards the C-terminus which act as protein-protein interaction domains.
Pssm-ID: 462860 [Multi-domain] Cd Length: 187 Bit Score: 39.12 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 399 QQVRAM--LASTQKDKMELANQLEEEKRKVEDlqfrveeeSITKGDLETqTKLEHARIRqLEQCLHLEKSKAERLQKELE 476
Cdd:pfam09727 92 TQRRMLeqLAAAEKRHRRVIRELEEEKRKHAR--------DTAQGDDFT-YLLEKERER-LKQELEQEKAQQKRLEKELK 161
|
90
....*....|....*.
gi 1207177220 477 EKMQTTVEEKTRVMQL 492
Cdd:pfam09727 162 KLLEKLEEELSKQKQI 177
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
341-497 |
5.43e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 341 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYatetesnlqQVRAMLASTQKDKMELANQLE 420
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKY---------EEQLGNVRNNKEYEALQKEIE 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207177220 421 EEKRKVEDLqfrveEESItkgdLETQTKLEHAR--IRQLEQCLHLEKSKAERLQKELEEKMQTTVEEKTRVMQLEEELA 497
Cdd:COG1579 100 SLKRRISDL-----EDEI----LELMERIEELEeeLAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
342-505 |
5.59e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 342 QEALKEKQQHIEQLLAE--RDLERAEVAKatshicEVEKELAALKARHLQYATETESNLQQVRAMLASTQKDKMELANQL 419
Cdd:COG3096 507 QQALAQRLQQLRAQLAEleQRLRQQQNAE------RLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQR 580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177220 420 EEEKRKVEDLQFRVEE-ESITKGDLETQTKLEHARirqlEQC-LHLEKSKaerlqkELEEKMQTTVEEKTRVMQLEEELA 497
Cdd:COG3096 581 SELRQQLEQLRARIKElAARAPAWLAAQDALERLR----EQSgEALADSQ------EVTAAMQQLLEREREATVERDELA 650
|
....*...
gi 1207177220 498 LRKAEVEE 505
Cdd:COG3096 651 ARKQALES 658
|
|
| |
