protein ALP1-like [Danio rerio]
transposase family protein( domain architecture ID 229435)
transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
DDE_Tnp_4 super family | cl48181 | DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ... |
212-375 | 2.05e-20 | ||||
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. The actual alignment was detected with superfamily member pfam13359: Pssm-ID: 463855 [Multi-domain] Cd Length: 158 Bit Score: 87.72 E-value: 2.05e-20
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Name | Accession | Description | Interval | E-value | ||||
DDE_Tnp_4 | pfam13359 | DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ... |
212-375 | 2.05e-20 | ||||
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Pssm-ID: 463855 [Multi-domain] Cd Length: 158 Bit Score: 87.72 E-value: 2.05e-20
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Name | Accession | Description | Interval | E-value | ||||
DDE_Tnp_4 | pfam13359 | DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ... |
212-375 | 2.05e-20 | ||||
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Pssm-ID: 463855 [Multi-domain] Cd Length: 158 Bit Score: 87.72 E-value: 2.05e-20
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Blast search parameters | ||||
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