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Conserved domains on  [gi|1370512362|ref|XP_024302922|]
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matrix metalloproteinase-16 isoform X1 [Homo sapiens]

Protein Classification

HX and DUF3377 domain-containing protein( domain architecture ID 10056668)

HX and DUF3377 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 77-269 1.80e-77

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


:

Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 235.67  E-value: 1.80e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370512362  77 PNICDG-NFNTLAILRREMFVFKDQWFWRVRNNRvMDGYPMQITYFWRGLPPSIDAVYENSD-GNFVFFKGNKYWVFKDT 154
Cdd:cd00094     1 PDACDPlSFDAVTTLRGELYFFKGRYFWRLSPGK-PPGSPFLISSFWPSLPSPVDAAFERPDtGKIYFFKGDKYWVYTGK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370512362 155 TLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRYWRYSEEMKTMDPGYPK-PITVWKGIPESPQGAFvHKEN 233
Cdd:cd00094    80 NLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDKYWRYDEKTQKMDPGYPKlIETDFPGVPDKVDAAF-RWLD 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1370512362 234 GFTYFYKGKEYWKFNNQILKVEPGYPRSILKDFMGC 269
Cdd:cd00094   159 GYYYFFKGDQYWRFDPRSKEVRVGYPLKISSDWLGC 194
DUF3377 pfam11857
Domain of unknown function (DUF3377); This domain is functionally uncharacterized. This domain ...
 274-344 2.09e-33

Domain of unknown function (DUF3377); This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 70 amino acids in length.


:

Pssm-ID: 463374  Cd Length: 72  Bit Score: 118.19  E-value: 2.09e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370512362 274 DRVKEGHSPPDDVDIVIKLDNTAS-TVKAIAIVIPCILALCLLVLVYTVFQFKRKGTPRHILYCKRSMQEWV 344
Cdd:pfam11857   1 DREEDRHEEEDEVDIVVVIDDVASgTVNAIAVVVPLVLLLCILVLIYAIVQFQRKGTPRRLLYCKRSLQDWV 72
Peptidase_M10 super family cl37987
Matrixin; The members of this family are enzymes that cleave peptides. These proteases require ...
 1-28 1.26e-08

Matrixin; The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis.


The actual alignment was detected with superfamily member pfam00413:

Pssm-ID: 425668 [Multi-domain]  Cd Length: 159  Bit Score: 53.39  E-value: 1.26e-08
                          10        20
                  ....*....|....*....|....*...
gi 1370512362   1 MAPFYQYMETDNFKLPNDDLQGIQKIYG 28
Cdd:pfam00413 132 MYPTYSPLDSKKFRLSQDDIKGIQQLYG 159
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 29-75 3.45e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 3.45e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1370512362   29 PPDKIPPPTRPLPTVPPhrsIPPADPRKNDRPKPPRPPTGRPSYPGA 75
Cdd:PHA03247  2901 PPDQPERPPQPQAPPPP---QPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
 
Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 77-269 1.80e-77

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 235.67  E-value: 1.80e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370512362  77 PNICDG-NFNTLAILRREMFVFKDQWFWRVRNNRvMDGYPMQITYFWRGLPPSIDAVYENSD-GNFVFFKGNKYWVFKDT 154
Cdd:cd00094     1 PDACDPlSFDAVTTLRGELYFFKGRYFWRLSPGK-PPGSPFLISSFWPSLPSPVDAAFERPDtGKIYFFKGDKYWVYTGK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370512362 155 TLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRYWRYSEEMKTMDPGYPK-PITVWKGIPESPQGAFvHKEN 233
Cdd:cd00094    80 NLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDKYWRYDEKTQKMDPGYPKlIETDFPGVPDKVDAAF-RWLD 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1370512362 234 GFTYFYKGKEYWKFNNQILKVEPGYPRSILKDFMGC 269
Cdd:cd00094   159 GYYYFFKGDQYWRFDPRSKEVRVGYPLKISSDWLGC 194
DUF3377 pfam11857
Domain of unknown function (DUF3377); This domain is functionally uncharacterized. This domain ...
 274-344 2.09e-33

Domain of unknown function (DUF3377); This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 70 amino acids in length.


Pssm-ID: 463374  Cd Length: 72  Bit Score: 118.19  E-value: 2.09e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370512362 274 DRVKEGHSPPDDVDIVIKLDNTAS-TVKAIAIVIPCILALCLLVLVYTVFQFKRKGTPRHILYCKRSMQEWV 344
Cdd:pfam11857   1 DREEDRHEEEDEVDIVVVIDDVASgTVNAIAVVVPLVLLLCILVLIYAIVQFQRKGTPRRLLYCKRSLQDWV 72
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 176-221 4.38e-12

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 59.89  E-value: 4.38e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1370512362 176 IDSAIWWEDvGKTYFFKGDRYWRYSEEmkTMDPGYPKPITVWKGIP 221
Cdd:pfam00045   1 IDAAFEDRD-GKTYFFKGRKYWRFDPQ--RVEPGYPKLISDFPGLP 43
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 176-221 1.85e-11

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 58.41  E-value: 1.85e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1370512362  176 IDSAIWWEDvGKTYFFKGDRYWRYSEemKTMDPGYPKPIT-VWKGIP 221
Cdd:smart00120   1 IDAAFELRD-GKTYFFKGDKYWRFDP--KRVDPGYPKLISsFFPGLP 44
Peptidase_M10 pfam00413
Matrixin; The members of this family are enzymes that cleave peptides. These proteases require ...
 1-28 1.26e-08

Matrixin; The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis.


Pssm-ID: 425668 [Multi-domain]  Cd Length: 159  Bit Score: 53.39  E-value: 1.26e-08
                          10        20
                  ....*....|....*....|....*...
gi 1370512362   1 MAPFYQYMETDNFKLPNDDLQGIQKIYG 28
Cdd:pfam00413 132 MYPTYSPLDSKKFRLSQDDIKGIQQLYG 159
ZnMc_MMP cd04278
Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are ...
 1-28 4.71e-06

Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).


Pssm-ID: 239805 [Multi-domain]  Cd Length: 157  Bit Score: 46.04  E-value: 4.71e-06
                          10        20
                  ....*....|....*....|....*...
gi 1370512362   1 MAPFYQYMETdNFKLPNDDLQGIQKIYG 28
Cdd:cd04278   131 MYPYYQGPVP-KFKLSQDDIRGIQALYG 157
PHA03247 PHA03247
large tegument protein UL36; Provisional
 29-75 3.45e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 3.45e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1370512362   29 PPDKIPPPTRPLPTVPPhrsIPPADPRKNDRPKPPRPPTGRPSYPGA 75
Cdd:PHA03247  2901 PPDQPERPPQPQAPPPP---QPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
 
Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 77-269 1.80e-77

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 235.67  E-value: 1.80e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370512362  77 PNICDG-NFNTLAILRREMFVFKDQWFWRVRNNRvMDGYPMQITYFWRGLPPSIDAVYENSD-GNFVFFKGNKYWVFKDT 154
Cdd:cd00094     1 PDACDPlSFDAVTTLRGELYFFKGRYFWRLSPGK-PPGSPFLISSFWPSLPSPVDAAFERPDtGKIYFFKGDKYWVYTGK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370512362 155 TLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRYWRYSEEMKTMDPGYPK-PITVWKGIPESPQGAFvHKEN 233
Cdd:cd00094    80 NLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDKYWRYDEKTQKMDPGYPKlIETDFPGVPDKVDAAF-RWLD 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1370512362 234 GFTYFYKGKEYWKFNNQILKVEPGYPRSILKDFMGC 269
Cdd:cd00094   159 GYYYFFKGDQYWRFDPRSKEVRVGYPLKISSDWLGC 194
DUF3377 pfam11857
Domain of unknown function (DUF3377); This domain is functionally uncharacterized. This domain ...
 274-344 2.09e-33

Domain of unknown function (DUF3377); This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 70 amino acids in length.


Pssm-ID: 463374  Cd Length: 72  Bit Score: 118.19  E-value: 2.09e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370512362 274 DRVKEGHSPPDDVDIVIKLDNTAS-TVKAIAIVIPCILALCLLVLVYTVFQFKRKGTPRHILYCKRSMQEWV 344
Cdd:pfam11857   1 DREEDRHEEEDEVDIVVVIDDVASgTVNAIAVVVPLVLLLCILVLIYAIVQFQRKGTPRRLLYCKRSLQDWV 72
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 176-221 4.38e-12

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 59.89  E-value: 4.38e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1370512362 176 IDSAIWWEDvGKTYFFKGDRYWRYSEEmkTMDPGYPKPITVWKGIP 221
Cdd:pfam00045   1 IDAAFEDRD-GKTYFFKGRKYWRFDPQ--RVEPGYPKLISDFPGLP 43
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 176-221 1.85e-11

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 58.41  E-value: 1.85e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1370512362  176 IDSAIWWEDvGKTYFFKGDRYWRYSEemKTMDPGYPKPIT-VWKGIP 221
Cdd:smart00120   1 IDAAFELRD-GKTYFFKGDKYWRFDP--KRVDPGYPKLISsFFPGLP 44
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 129-173 3.86e-10

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 54.56  E-value: 3.86e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1370512362  129 IDAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPP 173
Cdd:smart00120   1 IDAAFELRDGKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGLPC 45
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 129-173 8.08e-10

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 53.72  E-value: 8.08e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1370512362 129 IDAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHdLITLGSGIPP 173
Cdd:pfam00045   1 IDAAFEDRDGKTYFFKGRKYWRFDPQRVEPGYPK-LISDFPGLPC 44
Peptidase_M10 pfam00413
Matrixin; The members of this family are enzymes that cleave peptides. These proteases require ...
 1-28 1.26e-08

Matrixin; The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis.


Pssm-ID: 425668 [Multi-domain]  Cd Length: 159  Bit Score: 53.39  E-value: 1.26e-08
                          10        20
                  ....*....|....*....|....*...
gi 1370512362   1 MAPFYQYMETDNFKLPNDDLQGIQKIYG 28
Cdd:pfam00413 132 MYPTYSPLDSKKFRLSQDDIKGIQQLYG 159
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 91-127 3.56e-07

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 46.08  E-value: 3.56e-07
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1370512362   91 RREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPP 127
Cdd:smart00120   9 DGKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGLPC 45
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 227-268 1.49e-06

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 44.54  E-value: 1.49e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1370512362  227 AFVHKENGFTYFYKGKEYWKFNNQilKVEPGYPRSILKDFMG 268
Cdd:smart00120   3 AAFELRDGKTYFFKGDKYWRFDPK--RVDPGYPKLISSFFPG 42
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 227-269 1.83e-06

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 44.09  E-value: 1.83e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1370512362 227 AFVHKENGFTYFYKGKEYWKFNNQilKVEPGYPRSILKD-FMGC 269
Cdd:pfam00045   3 AAFEDRDGKTYFFKGRKYWRFDPQ--RVEPGYPKLISDFpGLPC 44
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 91-127 3.83e-06

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 43.32  E-value: 3.83e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1370512362  91 RREMFVFKDQWFWRVRNNRVMDGYPMQITYFwRGLPP 127
Cdd:pfam00045   9 DGKTYFFKGRKYWRFDPQRVEPGYPKLISDF-PGLPC 44
ZnMc_MMP cd04278
Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are ...
 1-28 4.71e-06

Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).


Pssm-ID: 239805 [Multi-domain]  Cd Length: 157  Bit Score: 46.04  E-value: 4.71e-06
                          10        20
                  ....*....|....*....|....*...
gi 1370512362   1 MAPFYQYMETdNFKLPNDDLQGIQKIYG 28
Cdd:cd04278   131 MYPYYQGPVP-KFKLSQDDIRGIQALYG 157
PHA03247 PHA03247
large tegument protein UL36; Provisional
 29-75 3.45e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 3.45e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1370512362   29 PPDKIPPPTRPLPTVPPhrsIPPADPRKNDRPKPPRPPTGRPSYPGA 75
Cdd:PHA03247  2901 PPDQPERPPQPQAPPPP---QPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 29-79 5.02e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 41.39  E-value: 5.02e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1370512362  29 PPDKIPPPTRPLPTVPPH-RSIPPADPRKNDRPKPPRPPT------GRPSYPGAK-PNI 79
Cdd:PHA02682  126 PPAVCPAPARPAPACPPStRQCPPAPPLPTPKPAPAAKPIflhnqlPPPDYPAAScPTI 184
PHA03247 PHA03247
large tegument protein UL36; Provisional
 10-74 1.86e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 1.86e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370512362   10 TDNFKLPNDDLQgiqkiygPPDKIPPPTRPLPT-VPPHRSIPPADPRKNDRPKPPRPPTGRPSYPG 74
Cdd:PHA03247  2895 TESFALPPDQPE-------RPPQPQAPPPPQPQpQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 28-77 4.46e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.02  E-value: 4.46e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1370512362  28 GPPDKIPPPTRPL------PTVPPHRSIPPADPRKNDRPKPPRPP-TGRPSYPGAKP 77
Cdd:PRK14950  370 KPTAAAPSPVRPTpapstrPKAAAAANIPPKEPVRETATPPPVPPrPVAPPVPHTPE 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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