NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1370463961|ref|XP_024305149|]
View 

ankyrin repeat domain-containing protein 10 isoform X2 [Homo sapiens]

Protein Classification

ankyrin repeat domain-containing protein( domain architecture ID 11429852)

ankyrin repeat domain-containing protein; ANK proteins mediate specific protein-protein interactions without necessarily recognizing specific primary sequences which allows for one ankyrin repeat domain to recognize and bind to a variety of intracellular substrates and may be involved in a wide array of functions

Gene Ontology:  GO:0005515
PubMed:  17176038
SCOP:  4000366

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
25-152 6.38e-28

Ankyrin repeat [Signal transduction mechanisms];


:

Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 105.42  E-value: 6.38e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  25 PLHRACRDGDLATLCSLLQQtpHAHLASEDSfYGWTPVHWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGH 104
Cdd:COG0666    90 LLHAAARNGDLEIVKLLLEA--GADVNARDK-DGETPLHLAAYNGNLEIVKLLLEAGADVNA-QDNDGNTPLHLAAANGN 165

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1370463961 105 PQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:COG0666   166 LEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVN 213
 
Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
25-152 6.38e-28

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 105.42  E-value: 6.38e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  25 PLHRACRDGDLATLCSLLQQtpHAHLASEDSfYGWTPVHWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGH 104
Cdd:COG0666    90 LLHAAARNGDLEIVKLLLEA--GADVNARDK-DGETPLHLAAYNGNLEIVKLLLEAGADVNA-QDNDGNTPLHLAAANGN 165

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1370463961 105 PQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:COG0666   166 LEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVN 213
Ank_2 pfam12796
Ankyrin repeats (3 copies);
63-152 5.44e-16

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 68.99  E-value: 5.44e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  63 HWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGHPQCLVWLIQaGANINKpDCEGETPIHKAARSGSLECIS 142
Cdd:pfam12796   2 HLAAKNGNLELVKLLLENGADANL-QDKNGRTALHLAAKNGHLEIVKLLLE-HADVNL-KDNGRTALHYAARSGHLEIVK 78

                          90
                  ....*....|
gi 1370463961 143 ALVANGAHVD 152
Cdd:pfam12796  79 LLLEKGADIN 88
PHA02875 PHA02875
ankyrin repeat protein; Provisional
 22-156 1.15e-11

ankyrin repeat protein; Provisional


Pssm-ID: 165206 [Multi-domain]  Cd Length: 413  Bit Score: 61.93  E-value: 1.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  22 LRFPLHRACRDGDLATLCSLLQQTPHAhlasEDSFY--GWTPVHWAAHFGKLECLVQLVRAGATLNVSTTRYAqTPAHIA 99
Cdd:PHA02875   68 IESELHDAVEEGDVKAVEELLDLGKFA----DDVFYkdGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF-SPLHLA 142

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1370463961 100 AFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVDYVIR 156
Cdd:PHA02875  143 VMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGK 199
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 57-86 1.16e-04

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 37.57  E-value: 1.16e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 1370463961   57 YGWTPVHWAAHFGKLECLVQLVRAGATLNV 86
Cdd:smart00248   1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
TRPV5-6 cd22192
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and ...
 54-172 8.53e-04

Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and TRPV6 (TRPV5/6) are two homologous members within the vanilloid subfamily of the transient receptor potential (TRP) family. TRPV5 and TRPV6 show only 30-40% homology with other members of the TRP family and have unique properties that differentiates them from other TRP channels. They mediate calcium uptake in epithelia and their expression is dramatically increased in numerous types of cancer. The structure of TRPV5/6 shows the typical topology features of all TRP family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6, which is predicted to form the Ca2+ pore, and large intracellular N- and C-terminal domains. The N-terminal domain of TRPV5/6 contains three ankyrin repeats. This structural element is present in several proteins and plays a role in protein-protein interactions. The N- and C-terminal tails of TRPV5/6 each contain an internal PDZ motif which can function as part of a molecular scaffold via interaction with PDZ-domain containing proteins. A major difference between the properties of TRPV5 and TRPV6 is in their tissue distribution: TRPV5 is predominantly expressed in the distal convoluted tubules (DCT) and connecting tubules (CNT) of the kidney, with limited expression in extrarenal tissues. In contrast, TRPV6 has a broader expression pattern such as expression in the intestine, kidney, placenta, epididymis, exocrine tissues, and a few other tissues.


Pssm-ID: 411976 [Multi-domain]  Cd Length: 609  Bit Score: 38.84  E-value: 8.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  54 DSFYGWTPVHWAAHFGKLECLVQLVRAGAtlNVSTTR---------------YAQTPAHIAAFGGHPQCLVWLIQAGANI 118
Cdd:cd22192    85 DLYQGETALHIAVVNQNLNLVRELIARGA--DVVSPRatgtffrpgpknliyYGEHPLSFAACVGNEEIVRLLIEHGADI 162

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1370463961 119 NKPDCEGETPIHkaarsgslecISALVANGAHVDYVirIDLIFSSNPRKGEHSI 172
Cdd:cd22192   163 RAQDSLGNTVLH----------ILVLQPNKTFACQM--YDLILSYDKEDDLQPL 204
trp TIGR00870
transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ ...
 54-130 5.17e-03

transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999). [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273311 [Multi-domain]  Cd Length: 743  Bit Score: 36.60  E-value: 5.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  54 DSFY-GWTPVHWAAHFGKLECLVQLVRAGATLNVSTT-------------RYAQTPAHIAAFGGHPQCLVWLIQAGANIN 119
Cdd:TIGR00870 123 SEFTpGITALHLAAHRQNYEIVKLLLERGASVPARACgdffvksqgvdsfYHGESPLNAAACLGSPSIVALLSEDPADIL 202

                          90
                  ....*....|.
gi 1370463961 120 KPDCEGETPIH 130
Cdd:TIGR00870 203 TADSLGNTLLH 213
 
Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
25-152 6.38e-28

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 105.42  E-value: 6.38e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  25 PLHRACRDGDLATLCSLLQQtpHAHLASEDSfYGWTPVHWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGH 104
Cdd:COG0666    90 LLHAAARNGDLEIVKLLLEA--GADVNARDK-DGETPLHLAAYNGNLEIVKLLLEAGADVNA-QDNDGNTPLHLAAANGN 165

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1370463961 105 PQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:COG0666   166 LEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVN 213
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
57-152 6.36e-24

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 94.64  E-value: 6.36e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  57 YGWTPVHWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSG 136
Cdd:COG0666    86 GGNTLLHAAARNGDLEIVKLLLEAGADVNA-RDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANG 164

                          90
                  ....*....|....*.
gi 1370463961 137 SLECISALVANGAHVD 152
Cdd:COG0666   165 NLEIVKLLLEAGADVN 180
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
25-152 3.48e-22

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 90.01  E-value: 3.48e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  25 PLHRACRDGDLATLCSLLQQtpHAHLASEDSfYGWTPVHWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGH 104
Cdd:COG0666   123 PLHLAAYNGNLEIVKLLLEA--GADVNAQDN-DGNTPLHLAAANGNLEIVKLLLEAGADVNA-RDNDGETPLHLAAENGH 198

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1370463961 105 PQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:COG0666   199 LEIVKLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLN 246
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
25-161 3.62e-16

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 73.83  E-value: 3.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  25 PLHRACRDGDLATLCSLLQQtpHAHLASEDSfYGWTPVHWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGH 104
Cdd:COG0666   156 PLHLAAANGNLEIVKLLLEA--GADVNARDN-DGETPLHLAAENGHLEIVKLLLEAGADVNA-KDNDGKTALDLAAENGN 231

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1370463961 105 PQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVDYVIRIDLIF 161
Cdd:COG0666   232 LEIVKLLLEAGADLNAKDKDGLTALLLAAAAGAALIVKLLLLALLLLAAALLDLLTL 288
Ank_2 pfam12796
Ankyrin repeats (3 copies);
63-152 5.44e-16

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 68.99  E-value: 5.44e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  63 HWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGHPQCLVWLIQaGANINKpDCEGETPIHKAARSGSLECIS 142
Cdd:pfam12796   2 HLAAKNGNLELVKLLLENGADANL-QDKNGRTALHLAAKNGHLEIVKLLLE-HADVNL-KDNGRTALHYAARSGHLEIVK 78

                          90
                  ....*....|
gi 1370463961 143 ALVANGAHVD 152
Cdd:pfam12796  79 LLLEKGADIN 88
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
19-152 5.31e-15

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 70.75  E-value: 5.31e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  19 LLSLRFPLHRACRDGDLATLCSLLQQTPHAHLASEDSfygwTPVHWAAHFGKLECLVQLVRAGATLNVSTTRYAQTPAHI 98
Cdd:COG0666    18 LLLLALLLLAAALLLLLLLLLLLLLALLALALADALG----ALLLLAAALAGDLLVALLLLAAGADINAKDDGGNTLLHA 93

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1370463961  99 AAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:COG0666    94 AARNGDLEIVKLLLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVN 147
Ank_2 pfam12796
Ankyrin repeats (3 copies);
26-122 3.47e-14

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 64.37  E-value: 3.47e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  26 LHRACRDGDLATLCSLLQQTPHAHLASEDsfyGWTPVHWAAHFGKLECLVQLVragATLNVSTTRYAQTPAHIAAFGGHP 105
Cdd:pfam12796   1 LHLAAKNGNLELVKLLLENGADANLQDKN---GRTALHLAAKNGHLEIVKLLL---EHADVNLKDNGRTALHYAARSGHL 74

                          90
                  ....*....|....*..
gi 1370463961 106 QCLVWLIQAGANINKPD 122
Cdd:pfam12796  75 EIVKLLLEKGADINVKD 91
PHA02875 PHA02875
ankyrin repeat protein; Provisional
 22-156 1.15e-11

ankyrin repeat protein; Provisional


Pssm-ID: 165206 [Multi-domain]  Cd Length: 413  Bit Score: 61.93  E-value: 1.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  22 LRFPLHRACRDGDLATLCSLLQQTPHAhlasEDSFY--GWTPVHWAAHFGKLECLVQLVRAGATLNVSTTRYAqTPAHIA 99
Cdd:PHA02875   68 IESELHDAVEEGDVKAVEELLDLGKFA----DDVFYkdGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF-SPLHLA 142

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1370463961 100 AFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVDYVIR 156
Cdd:PHA02875  143 VMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGK 199
Ank_4 pfam13637
Ankyrin repeats (many copies);
94-145 1.62e-10

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 53.82  E-value: 1.62e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1370463961  94 TPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALV 145
Cdd:pfam13637   3 TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 60-151 1.25e-07

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 49.96  E-value: 1.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  60 TPVHWAAHFGKLECLVQLVRAGATLNVSTTRyAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLE 139
Cdd:PHA02874  126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDN-GCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA 204

                          90
                  ....*....|..
gi 1370463961 140 CISALVANGAHV 151
Cdd:PHA02874  205 CIKLLIDHGNHI 216
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 26-132 1.51e-07

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 49.96  E-value: 1.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  26 LHRACRDGDLATLCSLLQQTPHAHLASEDSFYgwtPVHWAAHFGKLECLVQLVRAGATLNVSTTrYAQTPAHIAAFGGHP 105
Cdd:PHA02874  128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCY---PIHIAIKHNFFDIIKLLLEKGAYANVKDN-NGESPLHNAAEYGDY 203

                          90       100
                  ....*....|....*....|....*..
gi 1370463961 106 QCLVWLIQAGANINKPDCEGETPIHKA 132
Cdd:PHA02874  204 ACIKLLIDHGNHIMNKCKNGFTPLHNA 230
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 25-154 1.89e-07

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 49.68  E-value: 1.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  25 PLHRACR-DGDLATLCSLLQQTphAHLASEDsFYGWTPVHWAAHFGKLECLVQLVRAGATLNVSTTRYAqTPAHIAAFGG 103
Cdd:PHA02876  344 PLHQASTlDRNKDIVITLLELG--ANVNARD-YCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFALCGT 419

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1370463961 104 HPQCLV-WLIQAGANINKPDCEGETPIHKAARSG-SLECISALVANGAHVDYV 154
Cdd:PHA02876  420 NPYMSVkTLIDRGANVNSKNKDLSTPLHYACKKNcKLDVIEMLLDNGADVNAI 472
Ank_4 pfam13637
Ankyrin repeats (many copies);
58-112 2.35e-07

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 45.34  E-value: 2.35e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1370463961  58 GWTPVHWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGHPQCLVWLI 112
Cdd:pfam13637   1 ELTALHAAAASGHLELLRLLLEKGADINA-VDGNGETALHFAASNGNVEVLKLLL 54
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 24-151 3.36e-07

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 48.81  E-value: 3.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  24 FPLHRACRDGDLATLCSLLQQTPHAHLaseDSFYGWTPVHWAAHFGKLECLVQLVRAGATLNVSTTRyAQTPAHIAAFgg 103
Cdd:PHA02874  159 YPIHIAIKHNFFDIIKLLLEKGAYANV---KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN-GFTPLHNAII-- 232

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1370463961 104 HPQCLVWLIQAGANINKPDCEGETPIHKAAR-SGSLECISALVANGAHV 151
Cdd:PHA02874  233 HNRSAIELLINNASINDQDIDGSTPLHHAINpPCDIDIIDILLYHKADI 281
PHA02736 PHA02736
Viral ankyrin protein; Provisional
 26-152 7.95e-07

Viral ankyrin protein; Provisional


Pssm-ID: 165103 [Multi-domain]  Cd Length: 154  Bit Score: 46.41  E-value: 7.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  26 LHRACRDGDLATLCSLLQQTPHA--HLASEDSFYGWTPVHWAAHFGKL---ECLVQLVRAGATLNVSTTRYAQTPAHIAA 100
Cdd:PHA02736   21 LHYLCRNGGVTDLLAFKNAISDEnrYLVLEYNRHGKQCVHIVSNPDKAdpqEKLKLLMEWGADINGKERVFGNTPLHIAV 100

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1370463961 101 FGGHPQCLVWLI-QAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:PHA02736  101 YTQNYELATWLCnQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK 153
PHA03095 PHA03095
ankyrin-like protein; Provisional
 57-163 8.76e-07

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 47.71  E-value: 8.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  57 YGWTPVHWAAHFGKLECLVQ-LVRAGATLNVSTtRYAQTPAHI--AAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAA 133
Cdd:PHA03095   82 CGFTPLHLYLYNATTLDVIKlLIKAGADVNAKD-KVGRTPLHVylSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLL 160

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1370463961 134 RSG--SLECISALVANGAHVDYViriDLIFSS 163
Cdd:PHA03095  161 KSRnaNVELLRLLIDAGADVYAV---DDRFRS 189
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
65-154 2.11e-06

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 46.49  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  65 AAHFGKLECLVQLVRAGATLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISAL 144
Cdd:COG0666    27 AAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAAARNGDLEIVKLL 106

                          90
                  ....*....|
gi 1370463961 145 VANGAHVDYV 154
Cdd:COG0666   107 LEAGADVNAR 116
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 25-152 3.00e-06

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 46.21  E-value: 3.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  25 PLHRACRDGDLATLC-SLLQQTPHAhlaSEDSFYGWTPVHWAAHFG-KLECLVQLVRAGATLNVSTTRYaQTPAHIAA-F 101
Cdd:PHA02876  276 PLHHASQAPSLSRLVpKLLERGADV---NAKNIKGETPLYLMAKNGyDTENIRTLIMLGADVNAADRLY-ITPLHQAStL 351

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1370463961 102 GGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:PHA02876  352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE 402
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 91-165 8.08e-06

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 44.66  E-value: 8.08e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370463961  91 YAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVDYVIRIDLIFSSNP 165
Cdd:PHA03100  191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIETLLYFKDKD 265
PHA03095 PHA03095
ankyrin-like protein; Provisional
 58-129 8.56e-06

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 44.63  E-value: 8.56e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370463961  58 GWTPVHWAAHFGKLECLV--QLVRAGATLNvSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPI 129
Cdd:PHA03095  222 GNTPLHSMATGSSCKRSLvlPLLIAGISIN-ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294
PHA02878 PHA02878
ankyrin repeat protein; Provisional
 23-147 1.09e-05

ankyrin repeat protein; Provisional


Pssm-ID: 222939 [Multi-domain]  Cd Length: 477  Bit Score: 44.49  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  23 RFPLHRACRDGDLATLCSLLQQTphahlASED--SFYGWTPVHWAAHFGK-LECLVQLVRAGATLNVSTTRYAQTPAHIA 99
Cdd:PHA02878  202 NSPLHHAVKHYNKPIVHILLENG-----ASTDarDKCGNTPLHISVGYCKdYDILKLLLEHGVDVNAKSYILGLTALHSS 276

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1370463961 100 AFGghPQCLVWLIQAGANINKPDCEGETPIHKAARSGS-LECISALVAN 147
Cdd:PHA02878  277 IKS--ERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLcINIGRILISN 323
PHA02878 PHA02878
ankyrin repeat protein; Provisional
 77-152 1.68e-05

ankyrin repeat protein; Provisional


Pssm-ID: 222939 [Multi-domain]  Cd Length: 477  Bit Score: 44.10  E-value: 1.68e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370463961  77 LVRAGATLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:PHA02878  153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD 228
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 77-164 1.87e-05

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 43.89  E-value: 1.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  77 LVRAGATLNVsTTRYAQTPAHIAAFG--GHPQCLVWLIQAGANINKPDCEGETPIHKAARSGS--LECISALVANGAHVD 152
Cdd:PHA03100   92 LLEYGANVNA-PDNNGITPLLYAISKksNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKidLKILKLLIDKGVDIN 170

                          90
                  ....*....|..
gi 1370463961 153 YVIRIDLIFSSN 164
Cdd:PHA03100  171 AKNRVNYLLSYG 182
PHA03095 PHA03095
ankyrin-like protein; Provisional
 57-151 2.02e-05

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 43.47  E-value: 2.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  57 YGWTPVHWAAHFGKLECL--VQ-LVRAGATLNVsTTRYAQTPAHI-AAFGGHPQCLVWLIQAGANINKPDCEGETPIHKA 132
Cdd:PHA03095   46 YGKTPLHLYLHYSSEKVKdiVRlLLEAGADVNA-PERCGFTPLHLyLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY 124

                          90       100
                  ....*....|....*....|.
gi 1370463961 133 ARSGSL--ECISALVANGAHV 151
Cdd:PHA03095  125 LSGFNInpKVIRLLLRKGADV 145
Ank_5 pfam13857
Ankyrin repeats (many copies);
77-132 2.56e-05

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 40.02  E-value: 2.56e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1370463961  77 LVRAGATLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKA 132
Cdd:pfam13857   1 LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
PLN03192 PLN03192
Voltage-dependent potassium channel; Provisional
 65-136 7.33e-05

Voltage-dependent potassium channel; Provisional


Pssm-ID: 215625 [Multi-domain]  Cd Length: 823  Bit Score: 42.16  E-value: 7.33e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370463961  65 AAHFGKLECLVQLVRAGATLNVSTTRyAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSG 136
Cdd:PLN03192  532 VASTGNAALLEELLKAKLDPDIGDSK-GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK 602
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 57-86 1.16e-04

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 37.57  E-value: 1.16e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 1370463961   57 YGWTPVHWAAHFGKLECLVQLVRAGATLNV 86
Cdd:smart00248   1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
PTZ00322 PTZ00322
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
 77-144 3.09e-04

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional


Pssm-ID: 140343 [Multi-domain]  Cd Length: 664  Bit Score: 40.27  E-value: 3.09e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370463961  77 LVRAGATLNvSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISAL 144
Cdd:PTZ00322  101 LLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 57-119 3.62e-04

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 40.03  E-value: 3.62e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370463961  57 YGWTPVHWAAHFGKLECLVQLVRAGATLNVsTTRYAQTPAHIAAFGGHPQCLVWLIQAGANIN 119
Cdd:PHA03100  191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNL-VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 77-152 3.86e-04

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 39.95  E-value: 3.86e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370463961  77 LVRAGATLNVSTtRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:PHA02874  110 ILDCGIDVNIKD-AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184
Ank_4 pfam13637
Ankyrin repeats (many copies);
25-74 6.39e-04

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 36.10  E-value: 6.39e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1370463961  25 PLHRACRDGDLATLCSLLQQTPHAHLASEDsfyGWTPVHWAAHFGKLECL 74
Cdd:pfam13637   4 ALHAAAASGHLELLRLLLEKGADINAVDGN---GETALHFAASNGNVEVL 50
TRPV5-6 cd22192
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and ...
 54-172 8.53e-04

Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and TRPV6 (TRPV5/6) are two homologous members within the vanilloid subfamily of the transient receptor potential (TRP) family. TRPV5 and TRPV6 show only 30-40% homology with other members of the TRP family and have unique properties that differentiates them from other TRP channels. They mediate calcium uptake in epithelia and their expression is dramatically increased in numerous types of cancer. The structure of TRPV5/6 shows the typical topology features of all TRP family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6, which is predicted to form the Ca2+ pore, and large intracellular N- and C-terminal domains. The N-terminal domain of TRPV5/6 contains three ankyrin repeats. This structural element is present in several proteins and plays a role in protein-protein interactions. The N- and C-terminal tails of TRPV5/6 each contain an internal PDZ motif which can function as part of a molecular scaffold via interaction with PDZ-domain containing proteins. A major difference between the properties of TRPV5 and TRPV6 is in their tissue distribution: TRPV5 is predominantly expressed in the distal convoluted tubules (DCT) and connecting tubules (CNT) of the kidney, with limited expression in extrarenal tissues. In contrast, TRPV6 has a broader expression pattern such as expression in the intestine, kidney, placenta, epididymis, exocrine tissues, and a few other tissues.


Pssm-ID: 411976 [Multi-domain]  Cd Length: 609  Bit Score: 38.84  E-value: 8.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  54 DSFYGWTPVHWAAHFGKLECLVQLVRAGAtlNVSTTR---------------YAQTPAHIAAFGGHPQCLVWLIQAGANI 118
Cdd:cd22192    85 DLYQGETALHIAVVNQNLNLVRELIARGA--DVVSPRatgtffrpgpknliyYGEHPLSFAACVGNEEIVRLLIEHGADI 162

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1370463961 119 NKPDCEGETPIHkaarsgslecISALVANGAHVDYVirIDLIFSSNPRKGEHSI 172
Cdd:cd22192   163 RAQDSLGNTVLH----------ILVLQPNKTFACQM--YDLILSYDKEDDLQPL 204
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 94-120 1.39e-03

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 34.87  E-value: 1.39e-03
                           10        20
                   ....*....|....*....|....*..
gi 1370463961   94 TPAHIAAFGGHPQCLVWLIQAGANINK 120
Cdd:smart00248   4 TPLHLAAENGNLEVVKLLLDKGADINA 30
PHA02884 PHA02884
ankyrin repeat protein; Provisional
 49-134 1.55e-03

ankyrin repeat protein; Provisional


Pssm-ID: 165212 [Multi-domain]  Cd Length: 300  Bit Score: 38.04  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  49 HLASEDSFYgwTPVHWAAHFGKLECLVQLVRAGATLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETP 128
Cdd:PHA02884   63 FPLSENSKT--NPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTP 140


                  ....*.
gi 1370463961 129 IHKAAR 134
Cdd:PHA02884  141 IELALM 146
Ank_3 pfam13606
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 124-152 1.57e-03

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities.


Pssm-ID: 463933 [Multi-domain]  Cd Length: 30  Bit Score: 34.54  E-value: 1.57e-03
                          10        20
                  ....*....|....*....|....*....
gi 1370463961 124 EGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:pfam13606   1 DGNTPLHLAARNGRLEIVKLLLENGADIN 29
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 124-153 2.12e-03

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 34.10  E-value: 2.12e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1370463961  124 EGETPIHKAARSGSLECISALVANGAHVDY 153
Cdd:smart00248   1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Ank pfam00023
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 93-122 2.26e-03

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.


Pssm-ID: 459634 [Multi-domain]  Cd Length: 34  Bit Score: 34.19  E-value: 2.26e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1370463961  93 QTPAHIAA-FGGHPQCLVWLIQAGANINKPD 122
Cdd:pfam00023   3 NTPLHLAAgRRGNLEIVKLLLSKGADVNARD 33
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 111-159 3.81e-03

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 36.97  E-value: 3.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1370463961 111 LIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVDYVIRIDL 159
Cdd:PHA02876  164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDL 212
trp TIGR00870
transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ ...
 54-130 5.17e-03

transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999). [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273311 [Multi-domain]  Cd Length: 743  Bit Score: 36.60  E-value: 5.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  54 DSFY-GWTPVHWAAHFGKLECLVQLVRAGATLNVSTT-------------RYAQTPAHIAAFGGHPQCLVWLIQAGANIN 119
Cdd:TIGR00870 123 SEFTpGITALHLAAHRQNYEIVKLLLERGASVPARACgdffvksqgvdsfYHGESPLNAAACLGSPSIVALLSEDPADIL 202

                          90
                  ....*....|.
gi 1370463961 120 KPDCEGETPIH 130
Cdd:TIGR00870 203 TADSLGNTLLH 213
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 77-152 6.91e-03

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 36.19  E-value: 6.91e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370463961  77 LVRAGATLNVSTTrYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:PHA02876  164 LLEGGADVNAKDI-YCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN 238
Ank pfam00023
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 57-88 7.36e-03

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.


Pssm-ID: 459634 [Multi-domain]  Cd Length: 34  Bit Score: 33.03  E-value: 7.36e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1370463961  57 YGWTPVHWAA-HFGKLECLVQLVRAGATLNVST 88
Cdd:pfam00023   1 DGNTPLHLAAgRRGNLEIVKLLLSKGADVNARD 33
Ank_5 pfam13857
Ankyrin repeats (many copies);
111-152 9.38e-03

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 33.09  E-value: 9.38e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1370463961 111 LIQAG-ANINKPDCEGETPIHKAARSGSLECISALVANGAHVD 152
Cdd:pfam13857   1 LLEHGpIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLN 43
PHA02743 PHA02743
Viral ankyrin protein; Provisional
 27-159 9.66e-03

Viral ankyrin protein; Provisional


Pssm-ID: 222925 [Multi-domain]  Cd Length: 166  Bit Score: 35.18  E-value: 9.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370463961  27 HRACRDGDLAtlcSLLQQTP----HAHLASEDSFYGWTPVHWAAHFG------KLECLVQLvraGATLNVSTTRYAQTPA 96
Cdd:PHA02743   25 LRICRTGNIY---ELMEVAPfisgDGHLLHRYDHHGRQCTHMVAWYDranavmKIELLVNM---GADINARELGTGNTLL 98

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370463961  97 HIAAFGGHPQCLVWLIQA-GANINKPDCEGETPIHKAARSGSLECISALVANGAHVDYVIRIDL 159
Cdd:PHA02743   99 HIAASTKNYELAEWLCRQlGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH