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Conserved domains on  [gi|1370475067|ref|XP_024307263|]
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interferon regulatory factor 3 isoform X6 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IRF-3 super family cl11061
Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the ...
 56-180 3.67e-40

Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha,beta-stimulated gene). IRF-3 preexists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection.


The actual alignment was detected with superfamily member pfam10401:

Pssm-ID: 463076  Cd Length: 180  Bit Score: 138.54  E-value: 3.67e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370475067  56 WEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTL-----PGWPVTLPDPGMsLTDRGVMSYVRHVLSCLGGGLALWR 130
Cdd:pfam10401   2 TDLEITFFYRGRLVLELTVSSPEGCRLSYGPPDPQVAlygpvALQQVRFPDPDG-IPDERQREYTRRLLNVLERGLLLWV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1370475067 131 AGQWLWAQRLGHCHTYWAVSEELLPnsgHGPDgEVPKDKEGGVFDLGPFI 180
Cdd:pfam10401  81 AGQGLYAKRLCQSRVFWSGPEAPGG---DKPN-KLERDATVKLFDLAKFL 126
 
Name Accession Description Interval E-value
IRF-3 pfam10401
Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the ...
 56-180 3.67e-40

Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha,beta-stimulated gene). IRF-3 preexists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection.


Pssm-ID: 463076  Cd Length: 180  Bit Score: 138.54  E-value: 3.67e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370475067  56 WEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTL-----PGWPVTLPDPGMsLTDRGVMSYVRHVLSCLGGGLALWR 130
Cdd:pfam10401   2 TDLEITFFYRGRLVLELTVSSPEGCRLSYGPPDPQVAlygpvALQQVRFPDPDG-IPDERQREYTRRLLNVLERGLLLWV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1370475067 131 AGQWLWAQRLGHCHTYWAVSEELLPnsgHGPDgEVPKDKEGGVFDLGPFI 180
Cdd:pfam10401  81 AGQGLYAKRLCQSRVFWSGPEAPGG---DKPN-KLERDATVKLFDLAKFL 126
 
Name Accession Description Interval E-value
IRF-3 pfam10401
Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the ...
 56-180 3.67e-40

Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha,beta-stimulated gene). IRF-3 preexists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection.


Pssm-ID: 463076  Cd Length: 180  Bit Score: 138.54  E-value: 3.67e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370475067  56 WEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTL-----PGWPVTLPDPGMsLTDRGVMSYVRHVLSCLGGGLALWR 130
Cdd:pfam10401   2 TDLEITFFYRGRLVLELTVSSPEGCRLSYGPPDPQVAlygpvALQQVRFPDPDG-IPDERQREYTRRLLNVLERGLLLWV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1370475067 131 AGQWLWAQRLGHCHTYWAVSEELLPnsgHGPDgEVPKDKEGGVFDLGPFI 180
Cdd:pfam10401  81 AGQGLYAKRLCQSRVFWSGPEAPGG---DKPN-KLERDATVKLFDLAKFL 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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