NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1371546902|ref|XP_024329210|]
View 

apicoplast ribosomal protein S10, putative [Plasmodium falciparum 3D7]

Protein Classification

uS10/mL48 family ribosomal protein( domain architecture ID 10448432)

uS10/mL48 family ribosomal protein similar to fungal mitochondrial 37S ribosomal protein S10, human mitochondrial 39S ribosomal protein L48 and 28S ribosomal protein S10, and archaeal 30S ribosomal protein S10

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 76-174 4.56e-17

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


:

Pssm-ID: 459769  Cd Length: 98  Bit Score: 74.44  E-value: 4.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371546902  76 RIILSSYFSDHLQKAVFNVKEKLSQYpQFIVAGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKLDIFLNSSVPIK 155
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRL-GIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVD 79

                          90
                  ....*....|....*....
gi 1371546902 156 nsEFVNFLSVKLPRFVGFE 174
Cdd:pfam00338  80 --ALLRYLQLNLPEGVDVE 96
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 76-174 4.56e-17

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 74.44  E-value: 4.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371546902  76 RIILSSYFSDHLQKAVFNVKEKLSQYpQFIVAGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKLDIFLNSSVPIK 155
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRL-GIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVD 79

                          90
                  ....*....|....*....
gi 1371546902 156 nsEFVNFLSVKLPRFVGFE 174
Cdd:pfam00338  80 --ALLRYLQLNLPEGVDVE 96
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 75-146 2.00e-15

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 70.20  E-value: 2.00e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371546902  75 LRIILSSYfsDHL------QKAVFNVKEKLSQypqfiVAGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKLDI 146
Cdd:PRK00596    6 IRIRLKAF--DHRlldqsaKKIVETAKRTGAQ-----VRGPIPLPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDI 76
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 75-146 7.24e-15

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 68.62  E-value: 7.24e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371546902  75 LRIILSSYFSDHLQKAVFNVKEKLSQYpQFIVAGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKLDI 146
Cdd:COG0051     6 IRIRLKSYDHRLLDQSVKKIVETAKRT-GAKVKGPIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDI 76
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 75-146 3.43e-14

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 66.89  E-value: 3.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371546902  75 LRIILSSYfsDHlqkavfnvkEKLSQYPQFIV----------AGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKL 144
Cdd:TIGR01049   3 IRIKLKSY--DH---------RLLDQSTKKIVetakrtgaqvKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLI 71


                  ..
gi 1371546902 145 DI 146
Cdd:TIGR01049  72 DI 73
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 76-174 4.56e-17

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 74.44  E-value: 4.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371546902  76 RIILSSYFSDHLQKAVFNVKEKLSQYpQFIVAGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKLDIFLNSSVPIK 155
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRL-GIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVD 79

                          90
                  ....*....|....*....
gi 1371546902 156 nsEFVNFLSVKLPRFVGFE 174
Cdd:pfam00338  80 --ALLRYLQLNLPEGVDVE 96
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 75-146 2.00e-15

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 70.20  E-value: 2.00e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371546902  75 LRIILSSYfsDHL------QKAVFNVKEKLSQypqfiVAGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKLDI 146
Cdd:PRK00596    6 IRIRLKAF--DHRlldqsaKKIVETAKRTGAQ-----VRGPIPLPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDI 76
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 75-146 7.24e-15

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 68.62  E-value: 7.24e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371546902  75 LRIILSSYFSDHLQKAVFNVKEKLSQYpQFIVAGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKLDI 146
Cdd:COG0051     6 IRIRLKSYDHRLLDQSVKKIVETAKRT-GAKVKGPIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDI 76
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 75-146 3.43e-14

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 66.89  E-value: 3.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371546902  75 LRIILSSYfsDHlqkavfnvkEKLSQYPQFIV----------AGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKL 144
Cdd:TIGR01049   3 IRIKLKSY--DH---------RLLDQSTKKIVetakrtgaqvKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLI 71


                  ..
gi 1371546902 145 DI 146
Cdd:TIGR01049  72 DI 73
rps10 CHL00135
ribosomal protein S10; Validated
 75-151 5.10e-14

ribosomal protein S10; Validated


Pssm-ID: 177057  Cd Length: 101  Bit Score: 66.55  E-value: 5.10e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1371546902  75 LRIILSSYFSDHLQKAVFNVKEKLSQYPQFIVaGPIPQKTIRKRFTFLRSPHVDKDSREQFEIKQYSCKLDIFLNSS 151
Cdd:CHL00135    9 IRIKLKSFNHELLNSSCKKIIDTASRTNATAV-GPIPLPTKRRIYCVLRSPHVDKDSREHFEIRTHKRIIDIYYPSS 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH