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Conserved domains on  [gi|1604801095|ref|XP_028420573|]
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zinc finger protein 239-like [Perca flavescens]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11472214)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940
SCOP:  4003583

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
23-211 4.02e-07

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 49.69  E-value: 4.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604801095  23 KPFSCDQCEKSFKRSSHLKAHQLT--HSGE--KPFSCD--QCGKAFALACSLKLHYGIHTGEKRFTC--GECGATFLHKG 94
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPysLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604801095  95 HFQNHQNIHtgerahgcdqcgkaftsrgeltNHKRIHAGlKPHSC--GECGQAFGRRGTLIRHLRIHSGEKPYWCE--IC 170
Cdd:COG5048   368 NNEPPQSLQ----------------------QYKDLKND-KKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYNCKnpPC 424

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1604801095 171 KKMFSREYALEVHRRGHAgEKPYVCEECGKAFSSSGSLNGH 211
Cdd:COG5048   425 SKSFNRHYNLIPHKKIHT-NHAPLLCSILKSFRRDLDLSNH 464
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
23-211 4.02e-07

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 49.69  E-value: 4.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604801095  23 KPFSCDQCEKSFKRSSHLKAHQLT--HSGE--KPFSCD--QCGKAFALACSLKLHYGIHTGEKRFTC--GECGATFLHKG 94
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPysLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604801095  95 HFQNHQNIHtgerahgcdqcgkaftsrgeltNHKRIHAGlKPHSC--GECGQAFGRRGTLIRHLRIHSGEKPYWCE--IC 170
Cdd:COG5048   368 NNEPPQSLQ----------------------QYKDLKND-KKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYNCKnpPC 424

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1604801095 171 KKMFSREYALEVHRRGHAgEKPYVCEECGKAFSSSGSLNGH 211
Cdd:COG5048   425 SKSFNRHYNLIPHKKIHT-NHAPLLCSILKSFRRDLDLSNH 464
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 25-47 6.18e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 33.43  E-value: 6.18e-03
                          10        20
                  ....*....|....*....|...
gi 1604801095  25 FSCDQCEKSFKRSSHLKAHQLTH 47
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
23-211 4.02e-07

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 49.69  E-value: 4.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604801095  23 KPFSCDQCEKSFKRSSHLKAHQLT--HSGE--KPFSCD--QCGKAFALACSLKLHYGIHTGEKRFTC--GECGATFLHKG 94
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPysLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1604801095  95 HFQNHQNIHtgerahgcdqcgkaftsrgeltNHKRIHAGlKPHSC--GECGQAFGRRGTLIRHLRIHSGEKPYWCE--IC 170
Cdd:COG5048   368 NNEPPQSLQ----------------------QYKDLKND-KKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYNCKnpPC 424

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1604801095 171 KKMFSREYALEVHRRGHAgEKPYVCEECGKAFSSSGSLNGH 211
Cdd:COG5048   425 SKSFNRHYNLIPHKKIHT-NHAPLLCSILKSFRRDLDLSNH 464
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
1-61 2.29e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.38  E-value: 2.29e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1604801095   1 MSSPQKKPRDPKDNVKNVPPEEKPFSCDQCEKSFKRSSHLKAHQLTHSGEKPFSCDQCGKA 61
Cdd:COG5048    10 SSNNSVLSSTPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCD 70
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 161-211 1.84e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 41.63  E-value: 1.84e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1604801095 161 GEKPYWCEI--CKKMFSREYALEVHRR-GH------------------AGEKPYVCEECGKAFSSSGSLNGH 211
Cdd:COG5189   346 DGKPYKCPVegCNKKYKNQNGLKYHMLhGHqnqklhenpspekmnifsAKDKPYRCEVCDKRYKNLNGLKYH 417
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 25-47 6.18e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 33.43  E-value: 6.18e-03
                          10        20
                  ....*....|....*....|...
gi 1604801095  25 FSCDQCEKSFKRSSHLKAHQLTH 47
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
109-160 7.60e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 36.98  E-value: 7.60e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1604801095 109 HGCDQCGKAFTSRGELTNHKRIHAGLKPHSCGECGQA--FGRRGTLIRHLRIHS 160
Cdd:COG5048    34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDksFSRPLELSRHLRTHH 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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