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Conserved domains on  [gi|1832470174|ref|XP_033372135|]
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protein mono-ADP-ribosyltransferase PARP9 [Parus major]

Protein Classification

macro domain-containing protein( domain architecture ID 10121108)

macro domain-containing protein may bind compounds such as O-acetyl-ADP-ribose, mono- and poly-ADP-ribose, and catalyze reactions such as O-acetyl-ADP-ribose deacetylation and reversal of ADP-ribosylation of mono-ADP-ribosylated substrates

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Macro_Af1521_BAL-like cd02907
macrodomain, Af1521-like family; Macrodomains are found in a variety of proteins with diverse ...
 80-239 2.33e-82

macrodomain, Af1521-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. The macrodomains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macrodomain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward ADP-ribose-1"-monophosphate (Appr-1"-p). Also included in this family are the N-terminal (or first) macrodomains of BAL (B-aggressive lymphoma) proteins which contain multiple macrodomains, such as the first macrodomain of mono-ADP-ribosyltransferase PARP14 (PARP-14, also known as ADP-ribosyltransferase diphtheria toxin-like 8, ATRD8, B aggressive lymphoma protein 2, or BAL2). Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcriptional repressors.


:

Pssm-ID: 394877 [Multi-domain]  Cd Length: 158  Bit Score: 254.72  E-value: 2.33e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  80 GIDICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNLYIQRYGRVQVGSIAVTGAGMLPCKEVIHA 159
Cdd:cd02907     1 GIKVSVYKGDITKEKVDAIVNAANERLKHGGGVAGAISKAGGPEIQEECDKYIKKNGKLRVGEVVVTSAGKLPCKYVIHA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 160 VGPRWNPREKERCCYLLKEAILNVLHYVSAPGkaLQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEASSPSCLREIRL 239
Cdd:cd02907    81 VGPRWSGGSKEECEDLLYKAVLNSLEEAEELK--ATSIAIPAISSGIFGFPLDLCAEAIVEAIKDFSESNSSSSLKEIRL 158
Macro_SF super family cl00019
macrodomain superfamily; Macrodomains are found in a variety of proteins with diverse cellular ...
 279-449 9.62e-24

macrodomain superfamily; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Macrodomains include the yeast macrodomain Poa1 which is a phosphatase of ADP-ribose-1"-phosphate, a by-product of tRNA splicing. Some macrodomains have ADPr-unrelated binding partners such as the coronavirus SUD-N (N-terminal subdomain) and SUD-M (middle subdomain) of the SARS-unique domain (SUD) which bind G-quadruplexes (unusual nucleic-acid structures formed by consecutive guanosine nucleotides). Macrodomains regulate a wide variety of cellular and organismal processes, including DNA damage repair, signal transduction, and immune response.


The actual alignment was detected with superfamily member cd02903:

Pssm-ID: 469581  Cd Length: 175  Bit Score: 98.09  E-value: 9.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 279 LKHGNIRMRIIKQHPKNLKNTAIVNPLNARGEPFSQSSRQLLEKESPAFWKEL--QYHFRhptRSKEPRVTRRHELPSTF 356
Cdd:cd02903     3 MKIGGITVQLVKGDITKEKTDVIVNSVSSDLLLKGGVSKAILKAAGPELQDECanQGKQP---ASGDVIVTSGGNLPCKY 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 357 VLHMALQCQHPVlQCEELEDAVKRCLDHFQDISSPSISFPV--NWSPTLPVDIVAETMIEAVLNFSKAYPMK-KREVQIV 433
Cdd:cd02903    80 VYHVVLPHYNPG-NEKTLKDIVRKCLEKAENYKMSSISFPAigTGNLGFPKDVVAEIMIDEVLKFSSKNPSSsLKEVRFV 158

                         170
                  ....*....|....*.
gi 1832470174 434 ICPddPDAYEVVLRKF 449
Cdd:cd02903   159 IFP--PETLQAFSDEL 172
 
Name Accession Description Interval E-value
Macro_Af1521_BAL-like cd02907
macrodomain, Af1521-like family; Macrodomains are found in a variety of proteins with diverse ...
 80-239 2.33e-82

macrodomain, Af1521-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. The macrodomains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macrodomain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward ADP-ribose-1"-monophosphate (Appr-1"-p). Also included in this family are the N-terminal (or first) macrodomains of BAL (B-aggressive lymphoma) proteins which contain multiple macrodomains, such as the first macrodomain of mono-ADP-ribosyltransferase PARP14 (PARP-14, also known as ADP-ribosyltransferase diphtheria toxin-like 8, ATRD8, B aggressive lymphoma protein 2, or BAL2). Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcriptional repressors.


Pssm-ID: 394877 [Multi-domain]  Cd Length: 158  Bit Score: 254.72  E-value: 2.33e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  80 GIDICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNLYIQRYGRVQVGSIAVTGAGMLPCKEVIHA 159
Cdd:cd02907     1 GIKVSVYKGDITKEKVDAIVNAANERLKHGGGVAGAISKAGGPEIQEECDKYIKKNGKLRVGEVVVTSAGKLPCKYVIHA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 160 VGPRWNPREKERCCYLLKEAILNVLHYVSAPGkaLQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEASSPSCLREIRL 239
Cdd:cd02907    81 VGPRWSGGSKEECEDLLYKAVLNSLEEAEELK--ATSIAIPAISSGIFGFPLDLCAEAIVEAIKDFSESNSSSSLKEIRL 158
PRK00431 PRK00431
ADP-ribose-binding protein;
80-260 3.24e-49

ADP-ribose-binding protein;


Pssm-ID: 234759  Cd Length: 177  Bit Score: 168.48  E-value: 3.24e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  80 GIDICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNLYIQRYGRVQVGSIAVTGAGMLPCKEVIHA 159
Cdd:PRK00431    2 GMRIEVVQGDITELEVDAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPAKYVIHT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 160 VGPRWNpREKERCCYLLKEAILNVLHYVSAPGkaLQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEasSPSCLREIRL 239
Cdd:PRK00431   82 VGPVWR-GGEDNEAELLASAYRNSLRLAAELG--LRSIAFPAISTGVYGYPLEDAARIAVKTVREFLT--RHKSPEEVYF 156

                         170       180
                  ....*....|....*....|.
gi 1832470174 240 VNIDESTVAEIKKACEKFLGD 260
Cdd:PRK00431  157 VCYDEEAYRLYERLLTQQGDE 177
YmdB COG2110
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ...
 83-256 1.68e-43

O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441713  Cd Length: 168  Bit Score: 153.02  E-value: 1.68e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  83 ICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNLYIqRYGRVQVGSIAVTGAGMLPCKEVIHAVGP 162
Cdd:COG2110     1 IEIVQGDITELDVDAIVNAANSSLLGGGGVAGAIHRAAGPELLEECRRLC-KQGGCPTGEAVITPAGNLPAKYVIHTVGP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 163 RWNPREKERcCYLLKEAILNVLHYVSApgKALQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEASSPscLREIRLVNI 242
Cdd:COG2110    80 VWRGGGPSE-EELLASCYRNSLELAEE--LGIRSIAFPAIGTGVGGFPWEEAAPIAVETLRDFLEEHPS--LEEVRFVLF 154

                         170
                  ....*....|....
gi 1832470174 243 DESTVAEIKKACEK 256
Cdd:COG2110   155 DEEDYEAYRRALAR 168
Macro pfam01661
Macro domain; The Macro or A1pp domain is a module of about 180 amino acids which can bind ...
 99-218 4.67e-31

Macro domain; The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose (an NAD metabolite) or related ligands. Binding to ADP-ribose could be either covalent or non-covalent: in certain cases it is believed to bind non-covalently; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein. This domain is found in a number of otherwise unrelated proteins. It is found at the C-terminus of the macro-H2A histone protein 4 and also in the non-structural proteins of several types of ssRNA viruses such as NSP3 from alpha-viruses and coronaviruses. This domain is also found on its own in a family of proteins from bacteria, archaebacteria and eukaryotes. The 3D structure of the SARS-CoV Macro domain has a mixed alpha/beta fold consisting of a central seven-stranded twisted mixed beta sheet sandwiched between two alpha helices on one face, and three on the other. The final alpha-helix, located on the edge of the central beta-sheet, forms the C terminus of the protein. The crystal structure of AF1521 (a Macro domain-only protein from Archaeoglobus fulgidus) has also been reported and compared with other Macro domain containing proteins. Several Macro domain only proteins are shorter than AF1521, and appear to lack either the first strand of the beta-sheet or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site.


Pssm-ID: 460286  Cd Length: 116  Bit Score: 116.90  E-value: 4.67e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  99 VNAANEYLRHGGGLALSLVKTGGPEIQEqsnlYIQRY--GRVQVGSIAVTGAGMLPCKEVIHAVGPRWNPREKERCCYLL 176
Cdd:pfam01661   1 VNAANSRLLGGGGVAGAIHRAAGPELLE----ECRELkkGGCPTGEAVVTPGGNLPAKYVIHTVGPTWRHGGSHGEEELL 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1832470174 177 KEAILNVLHYVSApgKALQSVAIPAVSSGVYAFPVDLCSQVI 218
Cdd:pfam01661  77 ESCYRNALALAEE--LGIKSIAFPAISTGIYGFPWEEAARIA 116
A1pp smart00506
Appr-1"-p processing enzyme; Function determined by Martzen et al. Extended family detected by ...
 83-218 5.62e-30

Appr-1"-p processing enzyme; Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson _ Fuji).


Pssm-ID: 214701  Cd Length: 133  Bit Score: 114.32  E-value: 5.62e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174   83 ICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIqEQSNLYIQRYGRVQVGSIAVTGAGMLPCKEVIHAVGP 162
Cdd:smart00506   2 LKVVKGDITKPRADAIVNAANSDGAHGGGVAGAIARAAGKAL-SKEEVRKLAGGECPVGTAVVTEGGNLPAKYVIHAVGP 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1832470174  163 RWnPREKERCCYLLKEAILNVLHYVSAPGKAlqSVAIPAVSSGVYAFPVDLCSQVI 218
Cdd:smart00506  81 RA-SGHSKEGFELLENAYRNCLELAIELGIT--SVALPLIGTGIYGVPKDRSAQAL 133
Macro_BAL-like cd02903
macrodomain, B-aggressive lymphoma (BAL)-like family; Macrodomains are found in a variety of ...
 279-449 9.62e-24

macrodomain, B-aggressive lymphoma (BAL)-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macrodomains. Most BAL family macrodomains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. This family includes the second and third macrodomains of mono-ADP-ribosyltransferase PARP14 (PARP-14, also known as ADP-ribosyltransferase diphtheria toxin-like 8, ATRD8, B aggressive lymphoma protein 2, or BAL2). Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcriptional repressors.


Pssm-ID: 394874  Cd Length: 175  Bit Score: 98.09  E-value: 9.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 279 LKHGNIRMRIIKQHPKNLKNTAIVNPLNARGEPFSQSSRQLLEKESPAFWKEL--QYHFRhptRSKEPRVTRRHELPSTF 356
Cdd:cd02903     3 MKIGGITVQLVKGDITKEKTDVIVNSVSSDLLLKGGVSKAILKAAGPELQDECanQGKQP---ASGDVIVTSGGNLPCKY 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 357 VLHMALQCQHPVlQCEELEDAVKRCLDHFQDISSPSISFPV--NWSPTLPVDIVAETMIEAVLNFSKAYPMK-KREVQIV 433
Cdd:cd02903    80 VYHVVLPHYNPG-NEKTLKDIVRKCLEKAENYKMSSISFPAigTGNLGFPKDVVAEIMIDEVLKFSSKNPSSsLKEVRFV 158

                         170
                  ....*....|....*.
gi 1832470174 434 ICPddPDAYEVVLRKF 449
Cdd:cd02903   159 IFP--PETLQAFSDEL 172
YmdB COG2110
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ...
 343-448 4.52e-06

O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441713  Cd Length: 168  Bit Score: 47.09  E-value: 4.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 343 EPRVTRRHELPSTFVLHMALQCQHPVLQCEE--LEDAVKRCLDHFQ--DISS---PSISfpvnwspT----LPVDIVAET 411
Cdd:COG2110    59 EAVITPAGNLPAKYVIHTVGPVWRGGGPSEEelLASCYRNSLELAEelGIRSiafPAIG-------TgvggFPWEEAAPI 131

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1832470174 412 MIEAVLNFSKAYPmKKREVQIVIC-PDDPDAYEVVLRK 448
Cdd:COG2110   132 AVETLRDFLEEHP-SLEEVRFVLFdEEDYEAYRRALAR 168
 
Name Accession Description Interval E-value
Macro_Af1521_BAL-like cd02907
macrodomain, Af1521-like family; Macrodomains are found in a variety of proteins with diverse ...
 80-239 2.33e-82

macrodomain, Af1521-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. The macrodomains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macrodomain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward ADP-ribose-1"-monophosphate (Appr-1"-p). Also included in this family are the N-terminal (or first) macrodomains of BAL (B-aggressive lymphoma) proteins which contain multiple macrodomains, such as the first macrodomain of mono-ADP-ribosyltransferase PARP14 (PARP-14, also known as ADP-ribosyltransferase diphtheria toxin-like 8, ATRD8, B aggressive lymphoma protein 2, or BAL2). Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcriptional repressors.


Pssm-ID: 394877 [Multi-domain]  Cd Length: 158  Bit Score: 254.72  E-value: 2.33e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  80 GIDICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNLYIQRYGRVQVGSIAVTGAGMLPCKEVIHA 159
Cdd:cd02907     1 GIKVSVYKGDITKEKVDAIVNAANERLKHGGGVAGAISKAGGPEIQEECDKYIKKNGKLRVGEVVVTSAGKLPCKYVIHA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 160 VGPRWNPREKERCCYLLKEAILNVLHYVSAPGkaLQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEASSPSCLREIRL 239
Cdd:cd02907    81 VGPRWSGGSKEECEDLLYKAVLNSLEEAEELK--ATSIAIPAISSGIFGFPLDLCAEAIVEAIKDFSESNSSSSLKEIRL 158
PRK00431 PRK00431
ADP-ribose-binding protein;
80-260 3.24e-49

ADP-ribose-binding protein;


Pssm-ID: 234759  Cd Length: 177  Bit Score: 168.48  E-value: 3.24e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  80 GIDICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNLYIQRYGRVQVGSIAVTGAGMLPCKEVIHA 159
Cdd:PRK00431    2 GMRIEVVQGDITELEVDAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPAKYVIHT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 160 VGPRWNpREKERCCYLLKEAILNVLHYVSAPGkaLQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEasSPSCLREIRL 239
Cdd:PRK00431   82 VGPVWR-GGEDNEAELLASAYRNSLRLAAELG--LRSIAFPAISTGVYGYPLEDAARIAVKTVREFLT--RHKSPEEVYF 156

                         170       180
                  ....*....|....*....|.
gi 1832470174 240 VNIDESTVAEIKKACEKFLGD 260
Cdd:PRK00431  157 VCYDEEAYRLYERLLTQQGDE 177
YmdB COG2110
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ...
 83-256 1.68e-43

O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441713  Cd Length: 168  Bit Score: 153.02  E-value: 1.68e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  83 ICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNLYIqRYGRVQVGSIAVTGAGMLPCKEVIHAVGP 162
Cdd:COG2110     1 IEIVQGDITELDVDAIVNAANSSLLGGGGVAGAIHRAAGPELLEECRRLC-KQGGCPTGEAVITPAGNLPAKYVIHTVGP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 163 RWNPREKERcCYLLKEAILNVLHYVSApgKALQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEASSPscLREIRLVNI 242
Cdd:COG2110    80 VWRGGGPSE-EELLASCYRNSLELAEE--LGIRSIAFPAIGTGVGGFPWEEAAPIAVETLRDFLEEHPS--LEEVRFVLF 154

                         170
                  ....*....|....
gi 1832470174 243 DESTVAEIKKACEK 256
Cdd:COG2110   155 DEEDYEAYRRALAR 168
Macro pfam01661
Macro domain; The Macro or A1pp domain is a module of about 180 amino acids which can bind ...
 99-218 4.67e-31

Macro domain; The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose (an NAD metabolite) or related ligands. Binding to ADP-ribose could be either covalent or non-covalent: in certain cases it is believed to bind non-covalently; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein. This domain is found in a number of otherwise unrelated proteins. It is found at the C-terminus of the macro-H2A histone protein 4 and also in the non-structural proteins of several types of ssRNA viruses such as NSP3 from alpha-viruses and coronaviruses. This domain is also found on its own in a family of proteins from bacteria, archaebacteria and eukaryotes. The 3D structure of the SARS-CoV Macro domain has a mixed alpha/beta fold consisting of a central seven-stranded twisted mixed beta sheet sandwiched between two alpha helices on one face, and three on the other. The final alpha-helix, located on the edge of the central beta-sheet, forms the C terminus of the protein. The crystal structure of AF1521 (a Macro domain-only protein from Archaeoglobus fulgidus) has also been reported and compared with other Macro domain containing proteins. Several Macro domain only proteins are shorter than AF1521, and appear to lack either the first strand of the beta-sheet or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site.


Pssm-ID: 460286  Cd Length: 116  Bit Score: 116.90  E-value: 4.67e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  99 VNAANEYLRHGGGLALSLVKTGGPEIQEqsnlYIQRY--GRVQVGSIAVTGAGMLPCKEVIHAVGPRWNPREKERCCYLL 176
Cdd:pfam01661   1 VNAANSRLLGGGGVAGAIHRAAGPELLE----ECRELkkGGCPTGEAVVTPGGNLPAKYVIHTVGPTWRHGGSHGEEELL 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1832470174 177 KEAILNVLHYVSApgKALQSVAIPAVSSGVYAFPVDLCSQVI 218
Cdd:pfam01661  77 ESCYRNALALAEE--LGIKSIAFPAISTGIYGFPWEEAARIA 116
A1pp smart00506
Appr-1"-p processing enzyme; Function determined by Martzen et al. Extended family detected by ...
 83-218 5.62e-30

Appr-1"-p processing enzyme; Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson _ Fuji).


Pssm-ID: 214701  Cd Length: 133  Bit Score: 114.32  E-value: 5.62e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174   83 ICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIqEQSNLYIQRYGRVQVGSIAVTGAGMLPCKEVIHAVGP 162
Cdd:smart00506   2 LKVVKGDITKPRADAIVNAANSDGAHGGGVAGAIARAAGKAL-SKEEVRKLAGGECPVGTAVVTEGGNLPAKYVIHAVGP 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1832470174  163 RWnPREKERCCYLLKEAILNVLHYVSAPGKAlqSVAIPAVSSGVYAFPVDLCSQVI 218
Cdd:smart00506  81 RA-SGHSKEGFELLENAYRNCLELAIELGIT--SVALPLIGTGIYGVPKDRSAQAL 133
Macro_OAADPr_deacetylase cd02908
macrodomain, O-acetyl-ADP-ribose (OAADPr) family; Macrodomains are found in a variety of ...
 83-240 1.33e-28

macrodomain, O-acetyl-ADP-ribose (OAADPr) family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family includes eukaryotic macrodomain proteins such as human MacroD1 and MacroD2, and bacterial proteins such as Escherichia coli YmdB; these have been shown to be O-acetyl-ADP-ribose (OAADPr) deacetylases that efficiently catalyze the hydrolysis of OAADPr to produce ADP-ribose and free acetate. OAADPr is a sirtuin reaction product generated from the NAD+-dependent protein deacetylation reactions and has been implicated as a signaling molecule. By acting on mono-ADP-ribosylated substrates, OAADPr deacetylases may reverse cellular ADP-ribosylation.


Pssm-ID: 438955  Cd Length: 166  Bit Score: 111.84  E-value: 1.33e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  83 ICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEqsnlYIQRYGRV-QVGSIAVTGAGMLPCKEVIHAVG 161
Cdd:cd02908     2 ISLWRGDITKLEVDAIVNAANSSLLGGGGVDGAIHRAAGPELLE----ECRKLGGVcPTGEAKITPGYNLPAKYVIHTVG 77

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1832470174 162 PRWNpREKERCCYLLKEAILNVLHYVSAPGkaLQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEasSPSCLREIRLV 240
Cdd:cd02908    78 PIGE-GGVEEEPELLASCYRSSLELALENG--LKSIAFPCISTGIYGYPNEEAAEIALNTVREWLE--EHDKIDRIIFV 151
Macro_BAL-like cd02903
macrodomain, B-aggressive lymphoma (BAL)-like family; Macrodomains are found in a variety of ...
 80-253 3.13e-25

macrodomain, B-aggressive lymphoma (BAL)-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macrodomains. Most BAL family macrodomains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. This family includes the second and third macrodomains of mono-ADP-ribosyltransferase PARP14 (PARP-14, also known as ADP-ribosyltransferase diphtheria toxin-like 8, ATRD8, B aggressive lymphoma protein 2, or BAL2). Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcriptional repressors.


Pssm-ID: 394874  Cd Length: 175  Bit Score: 102.33  E-value: 3.13e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  80 GIDICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNlyiQRYGRVQVGSIAVTGAGMLPCKEVIHA 159
Cdd:cd02903     7 GITVQLVKGDITKEKTDVIVNSVSSDLLLKGGVSKAILKAAGPELQDECA---NQGKQPASGDVIVTSGGNLPCKYVYHV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 160 VGPRWNPREKERccylLKEAILNVLHyvSAPGKALQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEASSPSCLREIRL 239
Cdd:cd02903    84 VLPHYNPGNEKT----LKDIVRKCLE--KAENYKMSSISFPAIGTGNLGFPKDVVAEIMIDEVLKFSSKNPSSSLKEVRF 157

                         170
                  ....*....|....
gi 1832470174 240 VNIDESTVAEIKKA 253
Cdd:cd02903   158 VIFPPETLQAFSDE 171
Macro_SF cd02749
macrodomain superfamily; Macrodomains are found in a variety of proteins with diverse cellular ...
 96-218 3.39e-24

macrodomain superfamily; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Macrodomains include the yeast macrodomain Poa1 which is a phosphatase of ADP-ribose-1"-phosphate, a by-product of tRNA splicing. Some macrodomains have ADPr-unrelated binding partners such as the coronavirus SUD-N (N-terminal subdomain) and SUD-M (middle subdomain) of the SARS-unique domain (SUD) which bind G-quadruplexes (unusual nucleic-acid structures formed by consecutive guanosine nucleotides). Macrodomains regulate a wide variety of cellular and organismal processes, including DNA damage repair, signal transduction, and immune response.


Pssm-ID: 394871  Cd Length: 121  Bit Score: 97.85  E-value: 3.39e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  96 DAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSnLYIQRYGRVQVGSIAVTGAGMLPCKEVIHAVGPRWNPREKerCCYL 175
Cdd:cd02749     1 DAIVNPANNDLYLGGGVAKAISKKAGGDLQEEC-EERKKNGYLKVGEVAVTKGGNLPARYIIHVVGPVASSKKK--TYEP 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1832470174 176 LKEAILNVLHYvsAPGKALQSVAIPAVSSGVYAFPVDLCSQVI 218
Cdd:cd02749    78 LKKCVKNCLSL--ADEKGLKSVAFPAIGTGIAGFPPEEAARIM 118
Macro_Ttha0132-like cd03330
Macrodomain, uncharacterized family similar to Thermus thermophilus hypothetical protein ...
 89-240 5.70e-24

Macrodomain, uncharacterized family similar to Thermus thermophilus hypothetical protein Ttha0132; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Macrodomains include the yeast macrodomain Poa1 which is a phosphatase of ADP-ribose-1"-phosphate, a by-product of tRNA splicing. Some macrodomains have ADPr-unrelated binding partners such as the coronavirus SUD-N (N-terminal subdomain) and SUD-M (middle subdomain) of the SARS-unique domain (SUD) which bind G-quadruplexes (unusual nucleic-acid structures formed by consecutive guanosine nucleotides). Macrodomains regulate a wide variety of cellular and organismal processes, including DNA damage repair, signal transduction, and immune response. This family is composed of uncharacterized proteins containing a stand-alone macrodomain, similar to Thermus thermophilus hypothetical protein Ttha0132.


Pssm-ID: 394879  Cd Length: 147  Bit Score: 97.89  E-value: 5.70e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  89 DLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNlyiqRYGRVQVGSIAVTGAGMLPCKEVIHAVG-PRWNPR 167
Cdd:cd03330     8 DITEQDADAIVNAANRRLLMGSGVAGAIKRKGGEEIEREAM----RKGPIRVGEAVETGAGKLPAKYVIHAAVmGMPGRS 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1832470174 168 EKERccylLKEAILNVLHYVSAPGkaLQSVAIPAVSSGVYAFPVDLCSQVIVmavkEFVEASSPSCLREIRLV 240
Cdd:cd03330    84 SEES----IRDATRNALAKAEELG--LESVAFPAIGTGVGGFPVEEVARIML----EEIKKCDPPLLEEVRLY 146
Macro_BAL-like cd02903
macrodomain, B-aggressive lymphoma (BAL)-like family; Macrodomains are found in a variety of ...
 279-449 9.62e-24

macrodomain, B-aggressive lymphoma (BAL)-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macrodomains. Most BAL family macrodomains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. This family includes the second and third macrodomains of mono-ADP-ribosyltransferase PARP14 (PARP-14, also known as ADP-ribosyltransferase diphtheria toxin-like 8, ATRD8, B aggressive lymphoma protein 2, or BAL2). Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcriptional repressors.


Pssm-ID: 394874  Cd Length: 175  Bit Score: 98.09  E-value: 9.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 279 LKHGNIRMRIIKQHPKNLKNTAIVNPLNARGEPFSQSSRQLLEKESPAFWKEL--QYHFRhptRSKEPRVTRRHELPSTF 356
Cdd:cd02903     3 MKIGGITVQLVKGDITKEKTDVIVNSVSSDLLLKGGVSKAILKAAGPELQDECanQGKQP---ASGDVIVTSGGNLPCKY 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 357 VLHMALQCQHPVlQCEELEDAVKRCLDHFQDISSPSISFPV--NWSPTLPVDIVAETMIEAVLNFSKAYPMK-KREVQIV 433
Cdd:cd02903    80 VYHVVLPHYNPG-NEKTLKDIVRKCLEKAENYKMSSISFPAigTGNLGFPKDVVAEIMIDEVLKFSSKNPSSsLKEVRFV 158

                         170
                  ....*....|....*.
gi 1832470174 434 ICPddPDAYEVVLRKF 449
Cdd:cd02903   159 IFP--PETLQAFSDEL 172
Macro_H2A-like cd02904
macrodomain, macroH2A-like family; Macrodomains are found in a variety of proteins with ...
 75-245 1.13e-22

macrodomain, macroH2A-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macrodomain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-ribose, but does bind the monomeric SirT1 metabolite O-acetyl-ADP-ribose (OAADPR) with high affinity through its macrodomain. This family also includes the ADP-ribose binding macrodomain of the macroH2A variant, macroH2A1.1. The macroH2A1.1 isoform inhibits PARP1-dependent DNA-damage induced chromatin dynamics. The putative ADP-ribose binding pocket of the human macroH2A2 macrodomain exhibits marked structural differences compared with the macroH2A1.1 variant.


Pssm-ID: 394875  Cd Length: 188  Bit Score: 95.46  E-value: 1.13e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  75 KKVKSGIDICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNLYIQRYGRVQVGSIAVTGAGMLPCK 154
Cdd:cd02904    12 KKLFLGQKLTVVQGDIASIKADAIVHPTNATFYLGGEVGSALEKAGGKEFVEEVKELRKSNGPLEVAGAAISPGHNLPAK 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 155 EVIHAVGPRWNpreKERCCYLLKEAILNVLHYvsAPGKALQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVEASSPSCL 234
Cdd:cd02904    92 FVIHCNSPSWG---SDKCEELLEKTVKNCLAL--ADEKKLKSVAFPSIGSGRNGFPKQTAAQTILKAISNYFVSVMSSSL 166

                         170
                  ....*....|..
gi 1832470174 235 REIRLVNID-ES 245
Cdd:cd02904   167 KQIYFVLFDmES 178
Macro_X_Nsp3-like cd21557
X-domain (or Mac1 domain) of viral non-structural protein 3 and related macrodomains; The ...
 96-212 2.44e-18

X-domain (or Mac1 domain) of viral non-structural protein 3 and related macrodomains; The X-domain, also called Mac1, is the macrodomain found in riboviral non-structural protein 3 (Nsp3), including the Nsp3 of Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) as well as SARS-CoV-2, and other coronaviruses (alpha-, beta-, gamma-, and deltacoronavirus), among others. The SARS-CoV-2 Nsp3 Mac1 is highly conserved among all CoVs, and binds to and hydrolyzes mono-ADP-ribose (MAR) from target proteins. It appears to counter host-mediated antiviral ADP-ribosylation, a post-translational modification that is part of the host response to viral infections. Mac1 is essential for pathogenesis in multiple animal models of CoV infection, implicating it as a virulence factor and potential therapeutic target. Assays show that the de-MARylating activity leads to a rapid loss of substrate, and that Mac1 could not hydrolyze poly-ADP-ribose; thus, Mac1 is a MAR-hydrolase (mono-ADP ribosylhydrolase). Mac1 was originally named ADP-ribose-1"-phosphatase (ADRP) based on data demonstrating that it could remove the phosphate group from ADP-ribose-1"-phosphate; however, activity was modest and was unclear why this would impact a virus infection. This family also includes the X-domain of Avian infectious bronchitis virus (IBV) strain Beaudette coronavirus that does not bind ADP-ribose; the triple glycine sequence found in the X-domains of SARS-CoV and human coronavirus 229E (HCoV229E), which are involved in ADP-ribose binding, is not conserved in the IBV X-domain. SARS-CoVs have two other macrodomains referred to as the SUD-N (N-terminal subdomain, or Mac2) and SUD-M (middle SUD subdomain, or Mac3) of the SARS-unique domain (SUD), which also do not bind ADP-ribose; these bind G-quadruplexes (unusual nucleic-acid structures formed by consecutive guanosine nucleotides). SARS-CoV SUD-N and SUD-M are not included in this group.


Pssm-ID: 438957  Cd Length: 127  Bit Score: 81.06  E-value: 2.44e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  96 DAVVNAANEYLRHGGGLALSLVKTGGPEIQEQSNlYIQRYGRVQVGSIAVTGAGMLpCKEVIHAVGPRWNPREKERccyL 175
Cdd:cd21557     2 DVVVNAANENLKHGGGVAGAIYKATGGAFQKESD-YIKKNGPLKVGTAVLLPGHGL-AKNIIHVVGPRKRKGQDDQ---L 76

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1832470174 176 LKEAILNVLHYVSapgkalqSVAIPAVSSGVYAFPVD 212
Cdd:cd21557    77 LAAAYKAVNKEYG-------SVLTPLLSAGIFGVPPE 106
Macro_GDAP2-like cd02905
macrodomain, GDAP2-like family; Macrodomains are found in a variety of proteins with diverse ...
 83-227 5.93e-17

macrodomain, GDAP2-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macrodomain and a C-terminal Sec14p-like lipid binding domain. It is specifically expressed in brain and testis.


Pssm-ID: 394876  Cd Length: 169  Bit Score: 78.43  E-value: 5.93e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  83 ICVYKDDLTRHKVDAVVNAANEYLRHGGGLALSLVKTGGPEIQEQsnlyIQRYGRVQVGSIAVTGAGMLPCKEVIHAVGP 162
Cdd:cd02905     3 IVLWDGDLTLLNVDAIVNSTNESLTDKSPISDRLFLAAGPELREE----LAKLGGCRTGEAKLTKGYNLPARYVIHTVGP 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1832470174 163 RWNPRekerccYllKEAILNVLH--YVS----APGKALQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVE 227
Cdd:cd02905    79 RYNEK------Y--RTAAESALYscYRNvlqlAKEHKLRSVAFPVIHSERRGYPLEDGAHIALRTVRRFLE 141
PRK04143 PRK04143
protein-ADP-ribose hydrolase;
82-227 5.02e-15

protein-ADP-ribose hydrolase;


Pssm-ID: 235225  Cd Length: 264  Bit Score: 75.40  E-value: 5.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174  82 DICVYKDDLTRHKVDAVVNAANEYL------RHGggLALSLVKT-GGPEIQEQSNLYIQRYGRVQ-VGSIAVTGAGMLPC 153
Cdd:PRK04143   84 NIFLWQGDITRLKVDAIVNAANSRLlgcfqpNHD--CIDNAIHTfAGVQLRLDCAEIMTEQGRKEaTGQAKITRAYNLPA 161

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1832470174 154 KEVIHAVGPRW-----NPREKErccyLLKEAILNVLHYvsAPGKALQSVAIPAVSSGVYAFPVDLCSQVIVMAVKEFVE 227
Cdd:PRK04143  162 KYVIHTVGPIIrkqpvSPIRAD----LLASCYRSCLKL--AEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLK 234
YmdB COG2110
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ...
 343-448 4.52e-06

O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441713  Cd Length: 168  Bit Score: 47.09  E-value: 4.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832470174 343 EPRVTRRHELPSTFVLHMALQCQHPVLQCEE--LEDAVKRCLDHFQ--DISS---PSISfpvnwspT----LPVDIVAET 411
Cdd:COG2110    59 EAVITPAGNLPAKYVIHTVGPVWRGGGPSEEelLASCYRNSLELAEelGIRSiafPAIG-------TgvggFPWEEAAPI 131

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1832470174 412 MIEAVLNFSKAYPmKKREVQIVIC-PDDPDAYEVVLRK 448
Cdd:COG2110   132 AVETLRDFLEEHP-SLEEVRFVLFdEEDYEAYRRALAR 168
Macro_GDAP2-like cd02905
macrodomain, GDAP2-like family; Macrodomains are found in a variety of proteins with diverse ...
 285-359 7.06e-03

macrodomain, GDAP2-like family; Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macrodomain and a C-terminal Sec14p-like lipid binding domain. It is specifically expressed in brain and testis.


Pssm-ID: 394876  Cd Length: 169  Bit Score: 37.60  E-value: 7.06e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1832470174 285 RMRIIKQHPKNLKNTAIVNPLNARGEPFSQSSRQLLEKESPAFWKELQYHfrHPTRSKEPRVTRRHELPSTFVLH 359
Cdd:cd02905     2 KIVLWDGDLTLLNVDAIVNSTNESLTDKSPISDRLFLAAGPELREELAKL--GGCRTGEAKLTKGYNLPARYVIH 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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