NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907074722|ref|XP_036011651|]
View 

zinc finger C3H1 domain-containing protein isoform X4 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 422-753 3.22e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 3.22e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  422 WLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPdyQSFWTFLHL 501
Cdd:COG2956     11 WYFKGLNYLLNGQ------PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLEL 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  502 -ESTFEEKDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALKLANDAIVAEYLktddr 580
Cdd:COG2956     83 aQDYLKAGLL--DRAEELLEKLLELDPDDA------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE----- 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  581 clawLAYIHLiefnslpsklydpsnanpsrivntepfvmpwqaAQDvktNPDLLLAVFEDAVKACTDetltsgerievCL 660
Cdd:COG2956    150 ----LAELYL---------------------------------EQG---DYDEAIEALEKALKLDPD-----------CA 178

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  661 PLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYhLCKFFIL 740
Cdd:COG2956    179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLER 257

                          330
                   ....*....|...
gi 1907074722  741 QDGGDKLLPVLRQ 753
Cdd:COG2956    258 KEGLEAALALLER 270
zf-C3H1 pfam10650
Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger ...
 243-262 1.46e-05

Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.


:

Pssm-ID: 431418  Cd Length: 22  Bit Score: 42.57  E-value: 1.46e-05
                           10        20
                   ....*....|....*....|.
gi 1907074722  243 FCRFDLTG-TCNDDDCQWQHV 262
Cdd:pfam10650    1 LCPYELAGgVCNDPSCEFQHF 21
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 422-753 3.22e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 3.22e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  422 WLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPdyQSFWTFLHL 501
Cdd:COG2956     11 WYFKGLNYLLNGQ------PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLEL 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  502 -ESTFEEKDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALKLANDAIVAEYLktddr 580
Cdd:COG2956     83 aQDYLKAGLL--DRAEELLEKLLELDPDDA------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE----- 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  581 clawLAYIHLiefnslpsklydpsnanpsrivntepfvmpwqaAQDvktNPDLLLAVFEDAVKACTDetltsgerievCL 660
Cdd:COG2956    150 ----LAELYL---------------------------------EQG---DYDEAIEALEKALKLDPD-----------CA 178

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  661 PLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYhLCKFFIL 740
Cdd:COG2956    179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLER 257

                          330
                   ....*....|...
gi 1907074722  741 QDGGDKLLPVLRQ 753
Cdd:COG2956    258 KEGLEAALALLER 270
zf-C3H1 pfam10650
Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger ...
 243-262 1.46e-05

Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.


Pssm-ID: 431418  Cd Length: 22  Bit Score: 42.57  E-value: 1.46e-05
                           10        20
                   ....*....|....*....|.
gi 1907074722  243 FCRFDLTG-TCNDDDCQWQHV 262
Cdd:pfam10650    1 LCPYELAGgVCNDPSCEFQHF 21
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 408-736 1.68e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.93  E-value: 1.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  408 LEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVE 487
Cdd:TIGR02917  556 LEKAAELNPQEIEPALALAQYYLGKGQ------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  488 YAPD-----------YQSF------WTFLHLESTFEEKDYVCERMVEFLMGAAKREISDILSFQLLE------ALLFRV- 543
Cdd:TIGR02917  630 LQPDsalalllladaYAVMknyakaITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQkqhpkaALGFELe 709

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  544 -QLHIFTGRCQSALAVLQNALKLANDAIVAEYL-----------KTDDRCLAWLAyihliefnslpsklyDPSNANPSRI 611
Cdd:TIGR02917  710 gDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLhrallasgntaEAVKTLEAWLK---------------THPNDAVLRT 774

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  612 VNTEPFVMPWQAAQDVKtnpdlllaVFEDAVKACTDetltsgerievclplytNMIALHQL----LERYE-EAVELCTSL 686
Cdd:TIGR02917  775 ALAELYLAQKDYDKAIK--------HYQTVVKKAPD-----------------NAVVLNNLawlyLELKDpRALEYAERA 829

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 1907074722  687 LESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCK 736
Cdd:TIGR02917  830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 675-725 1.99e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.54  E-value: 1.99e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907074722  675 RYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNP 725
Cdd:cd24142     15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
TPR_19 pfam14559
Tetratricopeptide repeat;
674-730 2.78e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.78e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907074722  674 ERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEI 730
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 422-753 3.22e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 3.22e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  422 WLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPdyQSFWTFLHL 501
Cdd:COG2956     11 WYFKGLNYLLNGQ------PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLEL 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  502 -ESTFEEKDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALKLANDAIVAEYLktddr 580
Cdd:COG2956     83 aQDYLKAGLL--DRAEELLEKLLELDPDDA------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE----- 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  581 clawLAYIHLiefnslpsklydpsnanpsrivntepfvmpwqaAQDvktNPDLLLAVFEDAVKACTDetltsgerievCL 660
Cdd:COG2956    150 ----LAELYL---------------------------------EQG---DYDEAIEALEKALKLDPD-----------CA 178

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  661 PLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYhLCKFFIL 740
Cdd:COG2956    179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLER 257

                          330
                   ....*....|...
gi 1907074722  741 QDGGDKLLPVLRQ 753
Cdd:COG2956    258 KEGLEAALALLER 270
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 405-499 5.49e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 61.18  E-value: 5.49e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG4235      3 IARLRQALAANPNDAEGWLLLGRAYLRLGR------YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER 76

                           90
                   ....*....|....*
gi 1907074722  485 AVEYAPDYQSFWTFL 499
Cdd:COG4235     77 ALALDPDNPEALYLL 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 621-753 6.03e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.12  E-value: 6.03e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  621 WQAAQDVKTNPDLLLAVFEDAVKACTDETLTSGERIEVCLPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETL 700
Cdd:COG5010     15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1907074722  701 AALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFFILQDGGDKLLPVLRQ 753
Cdd:COG5010     95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 630-755 4.73e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.51  E-value: 4.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  630 NPDLLLAVFEDAVKACTDEtltsgerievcLPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDR 709
Cdd:COG2956     23 QPDKAIDLLEEALELDPET-----------VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907074722  710 YDKARRVWLTAFENNPQNAEIFYHLCKFFILQDGGDKLLPVLRQFV 755
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
663-753 2.23e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 2.23e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  663 YTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFFILQD 742
Cdd:COG0457     79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158

                           90
                   ....*....|.
gi 1907074722  743 GGDKLLPVLRQ 753
Cdd:COG0457    159 RYEEALELLEK 169
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 659-745 2.77e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.61  E-value: 2.77e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  659 CLPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCkfF 738
Cdd:COG3914    111 NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG--N 188


                   ....*..
gi 1907074722  739 ILQDGGD 745
Cdd:COG3914    189 ALQDLGR 195
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 660-745 3.02e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.61  E-value: 3.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  660 LPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCkfFI 739
Cdd:COG3914    146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL--FA 223


                   ....*.
gi 1907074722  740 LQDGGD 745
Cdd:COG3914    224 LRQACD 229
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 659-753 4.50e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 4.50e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  659 CLPLYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFF 738
Cdd:COG4783      3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                           90
                   ....*....|....*
gi 1907074722  739 ILQDGGDKLLPVLRQ 753
Cdd:COG4783     83 LKAGDYDEALALLEK 97
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 668-778 5.99e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 5.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  668 ALHQLL-ERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFFILQDGGDK 746
Cdd:COG2956     15 GLNYLLnGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907074722  747 LLPVLRQFVGsffkpgfEKYSNVDLFRYLLNI 778
Cdd:COG2956     95 AEELLEKLLE-------LDPDDAEALRLLAEI 119
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
663-734 6.07e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.93  E-value: 6.07e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907074722  663 YTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHL 734
Cdd:COG0457     45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 405-575 6.80e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 6.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG2956     96 EELLEKLLELDPDDAEALRLLAEIYEQEGD------WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  485 AVEYAPDYQSFWTFL-HLEstFEEKDYvcERMVEFLMGAAKREISDilsfqlLEALLFRVQLHIFTGRCQSALAVLQNAL 563
Cdd:COG2956    170 ALKLDPDCARALLLLaELY--LEQGDY--EEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKAL 239

                          170
                   ....*....|..
gi 1907074722  564 KLANDAIVAEYL 575
Cdd:COG2956    240 ELDPSDDLLLAL 251
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 664-734 7.50e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 7.50e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907074722  664 TNMIALHQL------LERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHL 734
Cdd:COG4783     36 DNPEAFALLgeillqLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRL 112
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
663-734 2.05e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 2.05e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907074722  663 YTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHL 734
Cdd:COG0457     11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
405-590 3.81e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.62  E-value: 3.81e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG0457     62 LADYEQALELDPDDAEALNNLGLALQALGR------YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  485 AVEYAPDYQSFWT----FLHLESTFEEKDYVCERMVEFLMGAAKREISDILSFQLLEALLFRVQLHIFTGRCQSALAVLQ 560
Cdd:COG0457    136 ALELDPDDADALYnlgiALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                          170       180       190
                   ....*....|....*....|....*....|
gi 1907074722  561 NALKLANDAIVAEYLKTDDRCLAWLAYIHL 590
Cdd:COG0457    216 LAALAELLLLALALLLALRLAALALYQYRA 245
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 405-492 4.75e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 4.75e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG4783     58 IVLLHEALELDPDEPEARLNLGLALLKAGD------YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131


                   ....*...
gi 1907074722  485 AVEYAPDY 492
Cdd:COG4783    132 ALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 405-499 9.76e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 9.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG4783     24 EALLEKALELDPDNPEAFALLGEILLQLGD------LDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97

                           90
                   ....*....|....*
gi 1907074722  485 AVEYAPDYQSFWTFL 499
Cdd:COG4783     98 ALKLDPEHPEAYLRL 112
zf-C3H1 pfam10650
Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger ...
 243-262 1.46e-05

Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.


Pssm-ID: 431418  Cd Length: 22  Bit Score: 42.57  E-value: 1.46e-05
                           10        20
                   ....*....|....*....|.
gi 1907074722  243 FCRFDLTG-TCNDDDCQWQHV 262
Cdd:pfam10650    1 LCPYELAGgVCNDPSCEFQHF 21
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 667-755 1.51e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 1.51e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  667 IALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCKFFILQDGGDK 746
Cdd:COG3914     85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164


                   ....*....
gi 1907074722  747 LLPVLRQFV 755
Cdd:COG3914    165 AIAALRRAL 173
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 408-736 1.68e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.93  E-value: 1.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  408 LEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVE 487
Cdd:TIGR02917  556 LEKAAELNPQEIEPALALAQYYLGKGQ------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  488 YAPD-----------YQSF------WTFLHLESTFEEKDYVCERMVEFLMGAAKREISDILSFQLLE------ALLFRV- 543
Cdd:TIGR02917  630 LQPDsalalllladaYAVMknyakaITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQkqhpkaALGFELe 709

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  544 -QLHIFTGRCQSALAVLQNALKLANDAIVAEYL-----------KTDDRCLAWLAyihliefnslpsklyDPSNANPSRI 611
Cdd:TIGR02917  710 gDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLhrallasgntaEAVKTLEAWLK---------------THPNDAVLRT 774

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  612 VNTEPFVMPWQAAQDVKtnpdlllaVFEDAVKACTDetltsgerievclplytNMIALHQL----LERYE-EAVELCTSL 686
Cdd:TIGR02917  775 ALAELYLAQKDYDKAIK--------HYQTVVKKAPD-----------------NAVVLNNLawlyLELKDpRALEYAERA 829

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 1907074722  687 LESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHLCK 736
Cdd:TIGR02917  830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 405-496 1.70e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 1.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG3914     98 LALYRRALALNPDNAEALFNLGNLLLALGR------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171

                           90
                   ....*....|..
gi 1907074722  485 AVEYAPDYQSFW 496
Cdd:COG3914    172 ALELDPDNAEAL 183
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 662-725 2.11e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 2.11e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907074722  662 LYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNP 725
Cdd:COG5010     90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
669-755 3.18e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 3.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  669 LHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRvWLTAFENNPQNAEIFYHLCKFFILQDGGDKLL 748
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*..
gi 1907074722  749 PVLRQFV 755
Cdd:COG3063     80 AYLERAL 86
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
405-592 3.33e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 3.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG0457     28 IEDYEKALELDPDDAEALYNLGLAYLRLGR------YEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  485 AVEYAPDYQSFWTFLHLeSTFEEKDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALK 564
Cdd:COG0457    102 ALELDPDDAEALYNLGL-ALLELGRY--DEAIEAYERALELDPDDA------DALYNLGIALEKLGRYEEALELLEKLEA 172

                          170       180
                   ....*....|....*....|....*...
gi 1907074722  565 LANDAIVAEYLKTDDRCLAWLAYIHLIE 592
Cdd:COG0457    173 AALAALLAAALGEAALALAAAEVLLALL 200
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 405-490 3.85e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 3.85e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG5010     74 LALLEQALQLDPNNPELYYNLALLYSRSGD------KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                   ....*.
gi 1907074722  485 AVEYAP 490
Cdd:COG5010    148 ALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
663-725 6.31e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 6.31e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907074722  663 YTNMIALHQLLERYEEAVELcTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNP 725
Cdd:COG3063     29 LNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 419-568 6.77e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 6.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  419 VQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWTF 498
Cdd:COG4783      4 AEALYALAQALLLAGD------YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  499 LhLESTFEEKDYvcERMVEFLMGAAKREISDILSFQLLEALLFRvqlhifTGRCQSALAVLQNALKLAND 568
Cdd:COG4783     78 L-GLALLKAGDY--DEALALLEKALKLDPEHPEAYLRLARAYRA------LGRPDEAIAALEKALELDPD 138
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
405-491 1.12e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 1.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNvLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCET 484
Cdd:COG3063     12 EEYYEKALELDPDNADALNNLGLLLLEQGR------YDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                   ....*..
gi 1907074722  485 AVEYAPD 491
Cdd:COG3063     85 ALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 622-729 1.51e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 1.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  622 QAAQDVKTNPD-----LLLAV-------FEDAVKACTDETLTSGERIEVclplYTNMIALHQLLERYEEAVELCTSLLES 689
Cdd:COG4235      5 RLRQALAANPNdaegwLLLGRaylrlgrYDEALAAYEKALRLDPDNADA----LLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907074722  690 CPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAE 729
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 675-725 1.99e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.54  E-value: 1.99e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907074722  675 RYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNP 725
Cdd:cd24142     15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
415-574 6.17e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 6.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  415 NPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYqs 494
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGR------YEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-- 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  495 FWTFLHLESTFEE-KDYvcERMVEFLMGAAKREISDIlsfqllEALLFRVQLHIFTGRCQSALAVLQNALKLANDAIVAE 573
Cdd:COG0457     76 AEALNNLGLALQAlGRY--EEALEDYDKALELDPDDA------EALYNLGLALLELGRYDEAIEAYERALELDPDDADAL 147


                   .
gi 1907074722  574 Y 574
Cdd:COG0457    148 Y 148
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 669-734 1.12e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 1.12e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907074722  669 LHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEIFYHL 734
Cdd:COG4235     26 AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 662-727 1.91e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 1.91e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907074722  662 LYTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQN 727
Cdd:COG4783     74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_19 pfam14559
Tetratricopeptide repeat;
674-730 2.78e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.78e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907074722  674 ERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNAEI 730
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
TPR_19 pfam14559
Tetratricopeptide repeat;
405-462 2.89e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.89e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907074722  405 IANLEASVLENPSHVQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIW 462
Cdd:pfam14559    8 LELLEQALAEDPDNAEARLGLAEALLALGR------LDEAEALLAALPAADPDDPRYA 59
TPR_12 pfam13424
Tetratricopeptide repeat;
662-715 4.88e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 4.88e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907074722  662 LYTNMIALHQLLERYEEAVELCTSLLESC--------PTNCQLLETLAALYLKTDRYDKARR 715
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALE 66
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 406-592 6.07e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.36  E-value: 6.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  406 ANLEASVLENPSHVQLWLKLAYKYLNQNEglcseSLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETA 485
Cdd:COG3914     64 AGEAAAAAAALLLLAALLELAALLLQALG-----RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  486 VEYAPDYQSFWTFLhLESTFEEKDYvcERMVEFLMGAAKREISDILSFQLLEALLFRvqlhifTGRCQSALAVLQNALKL 565
Cdd:COG3914    139 LALNPDFAEAYLNL-GEALRRLGRL--EEAIAALRRALELDPDNAEALNNLGNALQD------LGRLEEAIAAYRRALEL 209

                          170       180
                   ....*....|....*....|....*....
gi 1907074722  566 A--NDAIVAEYLKTDDRCLAWLAYIHLIE 592
Cdd:COG3914    210 DpdNADAHSNLLFALRQACDWEVYDRFEE 238
TPR_14 pfam13428
Tetratricopeptide repeat;
419-468 8.71e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 35.09  E-value: 8.71e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1907074722  419 VQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDNPEIWCHYLRL 468
Cdd:pfam13428    1 PEALLALARALLALGD------PDEALALLERALALDPDDPEAWLALAQL 44
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 536-734 9.17e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.51  E-value: 9.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  536 LEALLFRVQLHIFTGRCQSALAVLQ----------NALKLANDAivaeYLKTDDrclaWLAYIHLI------------EF 593
Cdd:COG3071     85 LAVLLTRAELLLDQGQAEQALATLEalragaprhpQVLRLLLQA----YRQLGD----WEELLELLpalrkhkalsaeEA 156

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907074722  594 NSLPSKLYDpsnANPSRIVNTEPFVMPWQAAQD--VKTNPDLLLA----------------VFEDAVKACTDETLtsger 655
Cdd:COG3071    157 QALERRAYL---GLLRQAARDAEALKALWKALPraERRDPELAAAyaralialgdhdeaerLLREALKRQWDPRL----- 228

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907074722  656 ievcLPLYTNMialhqLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPqNAEIFYHL 734
Cdd:COG3071    229 ----VRLYGRL-----QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAEL 297
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
663-728 9.62e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.22  E-value: 9.62e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907074722  663 YTNMIALHQLLERYEEAVELCTSLLESCPTNCQLLETLAALYLKTDRYDKARRVWLTAFENNPQNA 728
Cdd:COG0457    113 LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAAL 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH