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Conserved domains on  [gi|1907081491|ref|XP_036012521|]
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vascular endothelial zinc finger 1 isoform X4 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SFP1 super family cl25788
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 230-287 2.36e-06

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5189:

Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 49.33  E-value: 2.36e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907081491 230 DEKPFECPI--CNQRFKRKDRMTYH-VRSHEGGIT----------------KPYTCSVCGKGFSRPDHLSCHVKHVH 287
Cdd:COG5189   346 DGKPYKCPVegCNKKYKNQNGLKYHmLHGHQNQKLhenpspekmnifsakdKPYRCEVCDKRYKNLNGLKYHRKHSH 422
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 230-287 2.36e-06

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 49.33  E-value: 2.36e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907081491 230 DEKPFECPI--CNQRFKRKDRMTYH-VRSHEGGIT----------------KPYTCSVCGKGFSRPDHLSCHVKHVH 287
Cdd:COG5189   346 DGKPYKCPVegCNKKYKNQNGLKYHmLHGHQNQKLhenpspekmnifsakdKPYRCEVCDKRYKNLNGLKYHRKHSH 422
zf-H2C2_2 pfam13465
Zinc-finger double domain;
220-245 1.71e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 1.71e-03
                          10        20
                  ....*....|....*....|....*.
gi 1907081491 220 HLNRHKLSHSDEKPFECPICNQRFKR 245
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 230-287 2.36e-06

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 49.33  E-value: 2.36e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907081491 230 DEKPFECPI--CNQRFKRKDRMTYH-VRSHEGGIT----------------KPYTCSVCGKGFSRPDHLSCHVKHVH 287
Cdd:COG5189   346 DGKPYKCPVegCNKKYKNQNGLKYHmLHGHQNQKLhenpspekmnifsakdKPYRCEVCDKRYKNLNGLKYHRKHSH 422
zf-H2C2_2 pfam13465
Zinc-finger double domain;
220-245 1.71e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 1.71e-03
                          10        20
                  ....*....|....*....|....*.
gi 1907081491 220 HLNRHKLSHSDEKPFECPICNQRFKR 245
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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