NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958799037|ref|XP_038938365|]
View 

D-glucuronyl C5-epimerase isoform X1 [Rattus norvegicus]

Protein Classification

D-glucuronyl C5-epimerase family protein( domain architecture ID 10535253)

D-glucuronyl C5-epimerase family protein similar to D-glucuronyl C5-epimerase that converts D-glucuronic acid residues adjacent to N-sulfate sugar residues to L-iduronic acid residues, both in maturing heparan sulfate and heparin chains

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
C5-epim_C pfam06662
D-glucuronyl C5-epimerase C-terminus; This family represents the C-terminus of D-glucuronyl ...
 417-608 3.69e-90

D-glucuronyl C5-epimerase C-terminus; This family represents the C-terminus of D-glucuronyl C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases catalyze the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans.


:

Pssm-ID: 461978  Cd Length: 187  Bit Score: 276.93  E-value: 3.69e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799037 417 QDEKGGWPIMVTRKLGEGFKsLEPGWYSAMAQGQAISTLVRAYLLTKDYVFLNSALRATAPYKFLSEQHGVKAVFMNkHD 496
Cdd:pfam06662   1 QDKLGGWRYNFSYKHYEGNK-LSPGWYSAMAQGQAISVLLRAYQLTGDEKYLDAAKKALNSFLIPVEKGGVKDTFMD-GP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799037 497 WYEEYPTTPSSFVLNGFMYSLIGLYDLketAGEKLGKEARSLYERGMESLKAMLPLYDTGSGTIYDLRHFMLGIAPNLAR 576
Cdd:pfam06662  79 WYEEYPTSPPSYVLNGFIFSLIGLYDL---STYTYDDEALELFDKGLKSLKAMLPKFDTGSWSYYDLRHVTIGNPPNLAR 155

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1958799037 577 WDYHTTHINQLQLLSTIDESPIFKEFVKRWKS 608
Cdd:pfam06662 156 WDYHKLHILLLNALYYITGDSIFKDYAKRWNS 187
 
Name Accession Description Interval E-value
C5-epim_C pfam06662
D-glucuronyl C5-epimerase C-terminus; This family represents the C-terminus of D-glucuronyl ...
 417-608 3.69e-90

D-glucuronyl C5-epimerase C-terminus; This family represents the C-terminus of D-glucuronyl C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases catalyze the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans.


Pssm-ID: 461978  Cd Length: 187  Bit Score: 276.93  E-value: 3.69e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799037 417 QDEKGGWPIMVTRKLGEGFKsLEPGWYSAMAQGQAISTLVRAYLLTKDYVFLNSALRATAPYKFLSEQHGVKAVFMNkHD 496
Cdd:pfam06662   1 QDKLGGWRYNFSYKHYEGNK-LSPGWYSAMAQGQAISVLLRAYQLTGDEKYLDAAKKALNSFLIPVEKGGVKDTFMD-GP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799037 497 WYEEYPTTPSSFVLNGFMYSLIGLYDLketAGEKLGKEARSLYERGMESLKAMLPLYDTGSGTIYDLRHFMLGIAPNLAR 576
Cdd:pfam06662  79 WYEEYPTSPPSYVLNGFIFSLIGLYDL---STYTYDDEALELFDKGLKSLKAMLPKFDTGSWSYYDLRHVTIGNPPNLAR 155

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1958799037 577 WDYHTTHINQLQLLSTIDESPIFKEFVKRWKS 608
Cdd:pfam06662 156 WDYHKLHILLLNALYYITGDSIFKDYAKRWNS 187
 
Name Accession Description Interval E-value
C5-epim_C pfam06662
D-glucuronyl C5-epimerase C-terminus; This family represents the C-terminus of D-glucuronyl ...
 417-608 3.69e-90

D-glucuronyl C5-epimerase C-terminus; This family represents the C-terminus of D-glucuronyl C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases catalyze the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans.


Pssm-ID: 461978  Cd Length: 187  Bit Score: 276.93  E-value: 3.69e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799037 417 QDEKGGWPIMVTRKLGEGFKsLEPGWYSAMAQGQAISTLVRAYLLTKDYVFLNSALRATAPYKFLSEQHGVKAVFMNkHD 496
Cdd:pfam06662   1 QDKLGGWRYNFSYKHYEGNK-LSPGWYSAMAQGQAISVLLRAYQLTGDEKYLDAAKKALNSFLIPVEKGGVKDTFMD-GP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799037 497 WYEEYPTTPSSFVLNGFMYSLIGLYDLketAGEKLGKEARSLYERGMESLKAMLPLYDTGSGTIYDLRHFMLGIAPNLAR 576
Cdd:pfam06662  79 WYEEYPTSPPSYVLNGFIFSLIGLYDL---STYTYDDEALELFDKGLKSLKAMLPKFDTGSWSYYDLRHVTIGNPPNLAR 155

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1958799037 577 WDYHTTHINQLQLLSTIDESPIFKEFVKRWKS 608
Cdd:pfam06662 156 WDYHKLHILLLNALYYITGDSIFKDYAKRWNS 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH